Title: A Data Analysis Tool for Pharmacokinetics
Diff between PKfit versions 1.2.0 dated 2013-05-07 and 1.2.1 dated 2014-04-20
Description: PKfit is a nonlinear regression (including a genetic
algorithm) program which was designed to perform model/curve
fitting and model simulations for pharmacokinetics.
Author: Chun-ying Lee, Yung-jin Lee
Maintainer: Yung-jin Lee
DESCRIPTION | 11
MD5 | 128 +++++------
NAMESPACE | 1
NEWS | 41 +++
R/PK.fit.R | 11
R/aicllsbc.R | 11
R/data.manipulate.R | 35 +--
R/entertitle.R | 8
R/fbolus1.R | 196 +++++++----------
R/fbolus2.R | 106 ++++-----
R/fbolus3.R |only
R/ffirst.lag.R | 165 +++++---------
R/ffirst.nolag.R | 158 +++++--------
R/ffirst2.R | 116 ++++------
R/finfu1.R | 166 +++++---------
R/finfu2.R | 86 ++-----
R/fmacro.one.R | 80 +++---
R/fmacro.three.R | 91 +++----
R/fmacro.two.R | 91 +++----
R/fzero.nolag.R | 156 +++++--------
R/iv.bolus.demo.R | 24 +-
R/iv.route.R | 8
R/mcsim.demo.R | 3
R/mmpk.demo.R | 65 +++--
R/montecarlo.R | 21 -
R/noniv.route.R | 12 -
R/nor.fit.R | 2
R/plotting.lin.R | 7
R/plotting.non.R | 2
R/plotting.sim.R | 12 -
R/run.R | 4
R/savefile.R | 4
R/sbolus.mm.out.R | 8
R/sbolus1.R | 426 +++++++++++++------------------------
R/sbolus1.out.R | 6
R/sbolus2.R | 273 +++++++----------------
R/sbolus2.out.R | 6
R/sfirst.mm.out.R | 16 -
R/sfirst.nolag.R | 584 ++++++++++++++++++++-------------------------------
R/sfirst1.out.R | 16 -
R/sfirst2.R | 344 ++++++++----------------------
R/sfirst2.out.R | 8
R/sinfu.mm.out.R | 8
R/sinfu1.R | 387 +++++++++++++--------------------
R/sinfu1.out.R | 6
R/sinfu2.R | 287 +++++++------------------
R/sinfu2.out.R | 6
R/smacro.R | 6
R/smacro.one.R | 252 +++++++++-------------
R/smacro.one.out.R | 14 -
R/smacro.three.R | 517 ++++++++++++++-------------------------------
R/smacro.three.out.R | 14 -
R/smacro.two.R | 391 ++++++++++++----------------------
R/smacro.two.out.R | 14 -
R/sone.iv.route.R | 8
R/sone.noniv.route.R | 12 -
R/szero.mm.out.R | 8
R/szero.nolag.R | 461 +++++++++++++++-------------------------
R/szero.out.R | 8
R/two.list.R | 6
R/zzz.R | 4
demo/00Index | 4
demo/mmpk.R | 3
man/fbolus2.Rd | 8
man/fbolus3.Rd |only
tests |only
66 files changed, 2343 insertions(+), 3589 deletions(-)
Title: Tools for simulating and plotting quantities of interest
estimated from Cox Proportional Hazards models
Diff between simPH versions 1.1 dated 2014-03-01 and 1.2 dated 2014-04-20
Description: The package simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
simPH-1.1/simPH/R/simGG.r |only
simPH-1.1/simPH/R/tvc.R |only
simPH-1.1/simPH/data/CarpenterFdaData.tab.gz |only
simPH-1.1/simPH/data/GolubEUPData.tab.gz |only
simPH-1.2/simPH/DESCRIPTION | 14
simPH-1.2/simPH/MD5 | 100 ++--
simPH-1.2/simPH/NAMESPACE | 21
simPH-1.2/simPH/NEWS | 179 +++++---
simPH-1.2/simPH/R/CarpenterFdaData.R | 7
simPH-1.2/simPH/R/GolubEUPData.R | 7
simPH-1.2/simPH/R/IntervalConstrict.R | 135 ++++--
simPH-1.2/simPH/R/MinMaxLines.R | 40 +
simPH-1.2/simPH/R/SPInBounds.R | 37 +
simPH-1.2/simPH/R/SmoothSim.R | 15
simPH-1.2/simPH/R/SurvExpand.R | 55 +-
simPH-1.2/simPH/R/coxsimInteract.R | 212 ++++++---
simPH-1.2/simPH/R/coxsimLinear.R | 88 ++--
simPH-1.2/simPH/R/coxsimPoly.R | 156 +++++--
simPH-1.2/simPH/R/coxsimSpline.R | 163 +++++--
simPH-1.2/simPH/R/coxsimtvc.R | 209 +++++----
simPH-1.2/simPH/R/ggfitStrata.R | 37 +
simPH-1.2/simPH/R/simGG.R |only
simPH-1.2/simPH/R/simGG.siminteract.R | 327 +++++++++-----
simPH-1.2/simPH/R/simGG.simlinear.R | 236 ++++++----
simPH-1.2/simPH/R/simGG.simpoly.R | 434 +++++++++++--------
simPH-1.2/simPH/R/simGG.simspline.R | 396 ++++++++++--------
simPH-1.2/simPH/R/simGG.simtvc.R | 593 ++++++++++++++-------------
simPH-1.2/simPH/R/simPH.R | 52 +-
simPH-1.2/simPH/R/smallUtils.R |only
simPH-1.2/simPH/README.md | 53 +-
simPH-1.2/simPH/build |only
simPH-1.2/simPH/data/CarpenterFdaData.tab |only
simPH-1.2/simPH/data/GolubEUPData.tab |only
simPH-1.2/simPH/demo |only
simPH-1.2/simPH/inst |only
simPH-1.2/simPH/man/CarpenterFdaData.Rd | 13
simPH-1.2/simPH/man/GolubEUPData.Rd | 12
simPH-1.2/simPH/man/SurvExpand.Rd | 48 +-
simPH-1.2/simPH/man/coxsimInteract.Rd | 159 +++----
simPH-1.2/simPH/man/coxsimLinear.Rd | 125 ++---
simPH-1.2/simPH/man/coxsimPoly.Rd | 147 +++---
simPH-1.2/simPH/man/coxsimSpline.Rd | 182 +++-----
simPH-1.2/simPH/man/coxsimtvc.Rd | 232 ++++------
simPH-1.2/simPH/man/ggfitStrata.Rd | 48 +-
simPH-1.2/simPH/man/setXl.Rd |only
simPH-1.2/simPH/man/simGG.Rd | 35 +
simPH-1.2/simPH/man/simGG.siminteract.Rd | 187 ++++----
simPH-1.2/simPH/man/simGG.simlinear.Rd | 173 +++----
simPH-1.2/simPH/man/simGG.simpoly.Rd | 138 ++----
simPH-1.2/simPH/man/simGG.simspline.Rd | 203 ++++-----
simPH-1.2/simPH/man/simGG.simtvc.Rd | 178 +++-----
simPH-1.2/simPH/man/simPH.Rd | 86 ++-
simPH-1.2/simPH/man/tvc.Rd | 56 +-
simPH-1.2/simPH/vignettes |only
54 files changed, 3186 insertions(+), 2402 deletions(-)
Title: A toolbox for the analysis of categorical data in social
sciences, and especially Geometric Data Analysis.
Diff between GDAtools versions 1.0 dated 2014-03-04 and 1.1 dated 2014-04-20
Description: This package contains functions for 'specific' MCA (Multiple Correspondence Analysis),
'class specific' MCA, computing and plotting structuring factors and concentration ellipses,
'standardized' MCA, inductive tests and others tools for Geometric Data Analysis. It also provides functions
for the translation of logit models coefficients into percentages (forthcoming), weighted contingency tables and an association
measure - i.e. Percentages of Maximum Deviation from Independence (PEM).
Author: Nicolas Robette
Maintainer: Nicolas Robette
DESCRIPTION | 8 ++++----
MD5 | 19 ++++++++++++-------
NAMESPACE | 2 +-
NEWS |only
R/multiMCA.R | 22 ++++++++++++----------
R/prop.wtable.R |only
R/textvarsup.R | 11 +++++------
R/wtable.R |only
man/multiMCA.Rd | 4 +++-
man/prop.wtable.Rd |only
man/stMCA.Rd | 2 +-
man/textvarsup.Rd | 6 +++---
man/wtable.Rd |only
13 files changed, 41 insertions(+), 33 deletions(-)
Title: Sure Independence Screening
Diff between SIS versions 0.7 dated 2014-04-15 and 0.7-1 dated 2014-04-20
Description: (Iterative) Sure Independence Screening for Generalized Linear Models and Cox's Proportional Hazards Models
Author: Jianqing Fan, Yang Feng, Diego Franco Saldana, Richard Samworth, Yichao Wu
Maintainer: Diego Franco Saldana
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/SIS.R | 3 ++-
3 files changed, 8 insertions(+), 7 deletions(-)
Title: Numeric routines for optically stimulated luminescence dating
Diff between numOSL versions 1.2 dated 2014-03-31 and 1.3 dated 2014-04-20
Description: Package for optimizing regular numeric problems in optically stimulated luminescence dating, such as: equivalent dose calculation; decay curve decomposition and fast-component equivalent dose estimation; statistical age models analysis and radial plot drawing.
Author: Peng Jun
Maintainer: Peng Jun
numOSL-1.2/numOSL/man/sgcED.Rd |only
numOSL-1.2/numOSL/src/calED2.f90 |only
numOSL-1.2/numOSL/src/fmin.f90 |only
numOSL-1.2/numOSL/src/fmin2.f90 |only
numOSL-1.2/numOSL/src/growfunc2.f90 |only
numOSL-1.2/numOSL/src/inipars2.f90 |only
numOSL-1.2/numOSL/src/interpolate2.f90 |only
numOSL-1.2/numOSL/src/lmfit1.f90 |only
numOSL-1.2/numOSL/src/lmfit2.f90 |only
numOSL-1.2/numOSL/src/sgcED.f90 |only
numOSL-1.2/numOSL/src/sgcED2.f90 |only
numOSL-1.3/numOSL/DESCRIPTION | 8
numOSL-1.3/numOSL/MD5 | 64
numOSL-1.3/numOSL/NEWS | 5
numOSL-1.3/numOSL/R/numOSL.R | 3125 ++++++++++++---------------
numOSL-1.3/numOSL/THANKS | 2
numOSL-1.3/numOSL/data/Signaldata.RData |binary
numOSL-1.3/numOSL/man/Curvedata.Rd | 4
numOSL-1.3/numOSL/man/EDdata.Rd | 2
numOSL-1.3/numOSL/man/RadialPlotter.Rd | 26
numOSL-1.3/numOSL/man/Signaldata.Rd | 7
numOSL-1.3/numOSL/man/calED.Rd | 64
numOSL-1.3/numOSL/man/dbED.Rd | 8
numOSL-1.3/numOSL/man/decomp.Rd | 18
numOSL-1.3/numOSL/man/decompc.Rd | 8
numOSL-1.3/numOSL/man/fastED.Rd | 19
numOSL-1.3/numOSL/man/mcFMM.Rd | 15
numOSL-1.3/numOSL/man/mcMAM.Rd | 24
numOSL-1.3/numOSL/man/numOSL-package.Rd | 11
numOSL-1.3/numOSL/man/print.RadialPlotter.Rd | 4
numOSL-1.3/numOSL/man/reportSAM.Rd | 16
numOSL-1.3/numOSL/src/calED.f90 | 437 +--
numOSL-1.3/numOSL/src/calED0.f90 |only
numOSL-1.3/numOSL/src/growFit.f90 |only
numOSL-1.3/numOSL/src/growfunc.f90 | 90
numOSL-1.3/numOSL/src/growfunc0.f90 |only
numOSL-1.3/numOSL/src/inipars.f90 | 59
numOSL-1.3/numOSL/src/inipars0.f90 |only
numOSL-1.3/numOSL/src/interpolate.f90 | 199 +
numOSL-1.3/numOSL/src/interpolate0.f90 |only
numOSL-1.3/numOSL/src/linearfit.f90 | 48
41 files changed, 2093 insertions(+), 2170 deletions(-)
Title: An improved evaluation of Kolmogorov's distribution
Diff between kolmim versions 0.1 dated 2013-01-15 and 0.2 dated 2014-04-20
Description: This package provides an alternative, more efficient
evaluation of extreme probabilities of Kolmogorov's goodness-of-fit measure,
Dn, when compared to the original implementation of Wang, Marsaglia, and
Tsang. These probabilities are used in Kolmogorov-Smirnov tests when
comparing two samples.
Author: Luis Carvalho
Maintainer: Luis Carvalho
DESCRIPTION | 19 ++++++++++---------
MD5 | 14 ++++++++------
NAMESPACE | 2 +-
R/kolmim.R | 9 ++++++++-
man/ks.test.imp.Rd | 4 ++--
man/pkolm.Rd |only
man/pkolmim.Rd | 4 ++--
src/kolmim.c | 33 +++++++++++++++++++++++++++++++++
src/ks.c |only
9 files changed, 64 insertions(+), 21 deletions(-)