Title: Implement tour methods in pure R code
Diff between tourr versions 0.5.2 dated 2012-06-19 and 0.5.3 dated 2014-04-23
Description: Implements geodesic interpolation and basis
generation functions that allow you to create new tour
methods from R.
Author: Dianne Cook
Maintainer: Hadley Wickham
tourr-0.5.2/tourr/R/display-ggobi.r |only
tourr-0.5.2/tourr/man/data-flea.Rd |only
tourr-0.5.2/tourr/man/data-laser.Rd |only
tourr-0.5.2/tourr/man/data-olive.Rd |only
tourr-0.5.2/tourr/man/data-ozone.Rd |only
tourr-0.5.2/tourr/man/data-places.Rd |only
tourr-0.5.2/tourr/man/data-ratcns.Rd |only
tourr-0.5.2/tourr/man/data-tao.Rd |only
tourr-0.5.2/tourr/man/display_ggobi.Rd |only
tourr-0.5.2/tourr/observe-bases.r |only
tourr-0.5.2/tourr/path-ggobi.r |only
tourr-0.5.2/tourr/util |only
tourr-0.5.3/tourr/DESCRIPTION | 32 +--
tourr-0.5.3/tourr/LICENSE |only
tourr-0.5.3/tourr/MD5 | 190 ++++++++++-----------
tourr-0.5.3/tourr/NAMESPACE | 30 +--
tourr-0.5.3/tourr/NEWS | 12 +
tourr-0.5.3/tourr/R/animate.r | 40 ++--
tourr-0.5.3/tourr/R/data.r |only
tourr-0.5.3/tourr/R/display-pcp.r | 28 +--
tourr-0.5.3/tourr/R/display-trails.r | 24 +-
tourr-0.5.3/tourr/R/display-xy.r | 53 ++++-
tourr-0.5.3/tourr/R/geodesic-path.r | 22 +-
tourr-0.5.3/tourr/R/history.r | 36 +--
tourr-0.5.3/tourr/R/path-andrews.r | 35 +--
tourr-0.5.3/tourr/R/path-dist.r | 22 --
tourr-0.5.3/tourr/R/path-index.r | 31 +--
tourr-0.5.3/tourr/R/range.r | 16 -
tourr-0.5.3/tourr/R/render.r | 10 -
tourr-0.5.3/tourr/R/util.r | 28 +--
tourr-0.5.3/tourr/README.md |only
tourr-0.5.3/tourr/man/Flea-measurements.Rd |only
tourr-0.5.3/tourr/man/Laser-measurements.Rd |only
tourr-0.5.3/tourr/man/Olive-oil-measurements.Rd |only
tourr-0.5.3/tourr/man/Ozone-measurements.Rd |only
tourr-0.5.3/tourr/man/Places-Ratings.Rd |only
tourr-0.5.3/tourr/man/Rat-CNS.Rd |only
tourr-0.5.3/tourr/man/Tropical-Atmosphere-Ocean.Rd |only
tourr-0.5.3/tourr/man/anaglyph.Rd | 11 -
tourr-0.5.3/tourr/man/andrews.Rd | 14 -
tourr-0.5.3/tourr/man/animate.Rd | 61 +++---
tourr-0.5.3/tourr/man/bases_little.Rd | 9
tourr-0.5.3/tourr/man/basis_init.Rd | 9
tourr-0.5.3/tourr/man/basis_nearby.Rd | 5
tourr-0.5.3/tourr/man/basis_random.Rd | 9
tourr-0.5.3/tourr/man/blank_plot.Rd | 5
tourr-0.5.3/tourr/man/center.Rd | 7
tourr-0.5.3/tourr/man/check_freezer_safe.Rd | 7
tourr-0.5.3/tourr/man/cmass.Rd | 10 -
tourr-0.5.3/tourr/man/dependence_tour.Rd | 26 +-
tourr-0.5.3/tourr/man/display_andrews.Rd | 21 --
tourr-0.5.3/tourr/man/display_depth.Rd | 33 +--
tourr-0.5.3/tourr/man/display_dist.Rd | 38 +---
tourr-0.5.3/tourr/man/display_faces.Rd | 26 +-
tourr-0.5.3/tourr/man/display_image.Rd | 32 +--
tourr-0.5.3/tourr/man/display_pcp.Rd | 23 +-
tourr-0.5.3/tourr/man/display_scatmat.Rd | 23 +-
tourr-0.5.3/tourr/man/display_stars.Rd | 24 +-
tourr-0.5.3/tourr/man/display_stereo.Rd | 26 +-
tourr-0.5.3/tourr/man/display_trails.Rd | 43 ++--
tourr-0.5.3/tourr/man/display_xy.Rd | 57 +++---
tourr-0.5.3/tourr/man/draw_tour_axes.Rd | 5
tourr-0.5.3/tourr/man/find_best_dir.Rd | 18 -
tourr-0.5.3/tourr/man/find_best_frozen_dir.Rd | 6
tourr-0.5.3/tourr/man/find_frozen_path_peak.Rd | 6
tourr-0.5.3/tourr/man/find_path_peak.Rd | 21 +-
tourr-0.5.3/tourr/man/find_platform.Rd | 7
tourr-0.5.3/tourr/man/freeze.Rd | 16 -
tourr-0.5.3/tourr/man/frozen_guided_tour.Rd | 25 +-
tourr-0.5.3/tourr/man/frozen_tour.Rd | 26 +-
tourr-0.5.3/tourr/man/geodesic_info.Rd | 38 ++--
tourr-0.5.3/tourr/man/geodesic_path.Rd | 40 ++--
tourr-0.5.3/tourr/man/grand_tour.Rd | 16 -
tourr-0.5.3/tourr/man/guided_tour.Rd | 54 ++---
tourr-0.5.3/tourr/man/holes.Rd | 10 -
tourr-0.5.3/tourr/man/interpolate.Rd | 11 -
tourr-0.5.3/tourr/man/is_orthonormal.Rd | 10 -
tourr-0.5.3/tourr/man/lda_pp.Rd | 10 -
tourr-0.5.3/tourr/man/little_tour.Rd | 17 -
tourr-0.5.3/tourr/man/local_tour.Rd | 18 -
tourr-0.5.3/tourr/man/new_geodesic_path.Rd | 35 +--
tourr-0.5.3/tourr/man/new_tour.Rd | 39 +---
tourr-0.5.3/tourr/man/normalise.Rd | 7
tourr-0.5.3/tourr/man/orthonormalise.Rd | 7
tourr-0.5.3/tourr/man/orthonormalise_by.Rd | 11 -
tourr-0.5.3/tourr/man/path_curves.Rd | 14 -
tourr-0.5.3/tourr/man/path_dist.Rd | 15 -
tourr-0.5.3/tourr/man/path_index.Rd | 16 -
tourr-0.5.3/tourr/man/paths_index.Rd | 13 -
tourr-0.5.3/tourr/man/pda_pp.Rd | 13 -
tourr-0.5.3/tourr/man/planned_tour.Rd | 29 +--
tourr-0.5.3/tourr/man/plot.path_curve.Rd | 16 -
tourr-0.5.3/tourr/man/plot.path_index.Rd | 5
tourr-0.5.3/tourr/man/proj_dist.Rd | 13 -
tourr-0.5.3/tourr/man/project3d.Rd | 14 -
tourr-0.5.3/tourr/man/render.Rd | 44 ++--
tourr-0.5.3/tourr/man/rescale.Rd | 7
tourr-0.5.3/tourr/man/save_history.Rd | 40 +---
tourr-0.5.3/tourr/man/search_better.Rd | 8
tourr-0.5.3/tourr/man/search_better_random.Rd | 7
tourr-0.5.3/tourr/man/search_frozen_geodesic.Rd | 17 -
tourr-0.5.3/tourr/man/search_geodesic.Rd | 36 +--
tourr-0.5.3/tourr/man/sphere.Rd | 10 -
tourr-0.5.3/tourr/man/step_angle.Rd | 9
tourr-0.5.3/tourr/man/step_fraction.Rd | 11 -
tourr-0.5.3/tourr/man/to_stop.Rd | 6
tourr-0.5.3/tourr/man/xnul.Rd | 9
107 files changed, 936 insertions(+), 997 deletions(-)
Title: River Visualisation Tool
Diff between rivervis versions 0.38.2 dated 2014-04-03 and 0.38.3 dated 2014-04-23
Description: Visualisation for quantitative and qualitative riverine data
Author: Feng Mao
Maintainer: Feng Mao
DESCRIPTION | 6 +++---
MD5 | 6 +++---
R/rivervis.R | 20 ++++++++++++--------
man/rivervis-package.Rd | 8 ++++----
4 files changed, 22 insertions(+), 18 deletions(-)
Title: Multidimensional Item Response Theory
Diff between mirt versions 1.2.1 dated 2014-02-21 and 1.3 dated 2014-04-23
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item functioning and modelling item and person
covariates.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Mateusz Zoltak [ctb]
Maintainer: Phil Chalmers
mirt-1.2.1/mirt/inst/tests |only
mirt-1.3/mirt/DESCRIPTION | 39 --
mirt-1.3/mirt/MD5 | 221 ++++++-------
mirt-1.3/mirt/NAMESPACE | 3
mirt-1.3/mirt/NEWS | 71 ++++
mirt-1.3/mirt/R/00-classes.R | 16
mirt-1.3/mirt/R/02-item_methods.R | 6
mirt-1.3/mirt/R/03-estimation.R | 136 +++++---
mirt-1.3/mirt/R/04-derivatives.R | 24 -
mirt-1.3/mirt/R/Confirmatory-methods.R | 63 +++
mirt-1.3/mirt/R/DIF.R | 9
mirt-1.3/mirt/R/DTF.R |only
mirt-1.3/mirt/R/EMstep.group.R | 168 +++++++--
mirt-1.3/mirt/R/Exploratory-methods.R | 76 ++--
mirt-1.3/mirt/R/M2.R | 2
mirt-1.3/mirt/R/MHRM.group.R | 53 +--
mirt-1.3/mirt/R/MultipleGroup-methods.R | 4
mirt-1.3/mirt/R/PLCI.mirt.R | 2
mirt-1.3/mirt/R/PrepData.R | 2
mirt-1.3/mirt/R/SE.methods.R | 30 +
mirt-1.3/mirt/R/bfactor.R | 4
mirt-1.3/mirt/R/calcLogLik.R | 11
mirt-1.3/mirt/R/createItem.R | 20 -
mirt-1.3/mirt/R/expand.table.R | 4
mirt-1.3/mirt/R/expected.item.R | 8
mirt-1.3/mirt/R/expected.test.R |only
mirt-1.3/mirt/R/extract.item.R | 6
mirt-1.3/mirt/R/fscores.R | 69 ++--
mirt-1.3/mirt/R/fscores.internal.R | 263 +++++++++++----
mirt-1.3/mirt/R/imputeMissing.R | 10
mirt-1.3/mirt/R/itemfit.R | 2
mirt-1.3/mirt/R/iteminfo.R | 4
mirt-1.3/mirt/R/itemplot.R | 7
mirt-1.3/mirt/R/itemplot.internal.R | 10
mirt-1.3/mirt/R/key2binary.R | 66 +--
mirt-1.3/mirt/R/mirt-package.R | 4
mirt-1.3/mirt/R/mirt.R | 81 ++--
mirt-1.3/mirt/R/mirt.model.R | 48 +-
mirt-1.3/mirt/R/mirtCluster.R | 5
mirt-1.3/mirt/R/mixedmirt.R | 2
mirt-1.3/mirt/R/model.elements.R | 19 -
mirt-1.3/mirt/R/multipleGroup.R | 18 -
mirt-1.3/mirt/R/personfit.R | 40 ++
mirt-1.3/mirt/R/shinyItemplot.R |only
mirt-1.3/mirt/R/simdata.R | 52 +--
mirt-1.3/mirt/R/testinfo.R | 4
mirt-1.3/mirt/R/utils.R | 437 +++++++++-----------------
mirt-1.3/mirt/R/wald.R | 72 +---
mirt-1.3/mirt/data/LSAT6.RData |binary
mirt-1.3/mirt/man/Bock1997.Rd | 13
mirt-1.3/mirt/man/ConfirmatoryClass-class.Rd | 15
mirt-1.3/mirt/man/DIF.Rd | 28 -
mirt-1.3/mirt/man/ExploratoryClass-class.Rd | 13
mirt-1.3/mirt/man/LSAT6.Rd | 15
mirt-1.3/mirt/man/LSAT7.Rd | 15
mirt-1.3/mirt/man/M2.Rd | 16
mirt-1.3/mirt/man/MixedClass-class.Rd | 11
mirt-1.3/mirt/man/MultipleGroupClass-class.Rd | 13
mirt-1.3/mirt/man/PLCI.mirt.Rd | 20 -
mirt-1.3/mirt/man/SAT12.Rd | 32 -
mirt-1.3/mirt/man/Science.Rd | 9
mirt-1.3/mirt/man/anova-method.Rd | 6
mirt-1.3/mirt/man/bfactor.Rd | 122 +++----
mirt-1.3/mirt/man/boot.mirt.Rd | 12
mirt-1.3/mirt/man/calcLogLik-method.Rd | 32 +
mirt-1.3/mirt/man/coef-method.Rd | 12
mirt-1.3/mirt/man/createItem.Rd | 33 -
mirt-1.3/mirt/man/deAyala.Rd | 11
mirt-1.3/mirt/man/expand.table.Rd | 14
mirt-1.3/mirt/man/expected.item.Rd | 13
mirt-1.3/mirt/man/expected.test.Rd |only
mirt-1.3/mirt/man/extract.item.Rd | 5
mirt-1.3/mirt/man/fscores.Rd | 96 +++--
mirt-1.3/mirt/man/imputeMissing.Rd | 12
mirt-1.3/mirt/man/itemfit.Rd | 59 +--
mirt-1.3/mirt/man/iteminfo.Rd | 10
mirt-1.3/mirt/man/itemplot.Rd | 21 -
mirt-1.3/mirt/man/key2binary.Rd | 13
mirt-1.3/mirt/man/mirt-package.Rd | 38 +-
mirt-1.3/mirt/man/mirt.Rd | 318 +++++++++---------
mirt-1.3/mirt/man/mirt.model.Rd | 120 +++----
mirt-1.3/mirt/man/mirtCluster.Rd | 21 -
mirt-1.3/mirt/man/mixedmirt.Rd | 88 ++---
mirt-1.3/mirt/man/mod2values.Rd | 14
mirt-1.3/mirt/man/multipleGroup.Rd | 98 ++---
mirt-1.3/mirt/man/personfit.Rd | 59 ++-
mirt-1.3/mirt/man/plot-method.Rd | 19 -
mirt-1.3/mirt/man/print-method.Rd | 8
mirt-1.3/mirt/man/probtrace.Rd | 10
mirt-1.3/mirt/man/randef.Rd | 11
mirt-1.3/mirt/man/read.mirt.Rd | 8
mirt-1.3/mirt/man/residuals-method.Rd | 27 -
mirt-1.3/mirt/man/show-method.Rd | 8
mirt-1.3/mirt/man/simdata.Rd | 24 -
mirt-1.3/mirt/man/summary-method.Rd | 24 -
mirt-1.3/mirt/man/testinfo.Rd | 6
mirt-1.3/mirt/man/wald.Rd | 35 --
mirt-1.3/mirt/src/Estep.cpp | 32 +
mirt-1.3/mirt/src/Estep.h | 6
mirt-1.3/mirt/src/Misc.cpp | 2
mirt-1.3/mirt/src/dpars.cpp | 4
mirt-1.3/mirt/src/traceLinePts.cpp | 60 ++-
mirt-1.3/mirt/tests |only
103 files changed, 2179 insertions(+), 1723 deletions(-)
Title: Explore classification models in high dimensions
Diff between classifly versions 0.3 dated 2011-01-29 and 0.4 dated 2014-04-23
Description: Given $p$-dimensional training data containing
$d$ groups (the design space), a classification
algorithm (classifier) predicts which group new data
belongs to. Generally the input to these algorithms is
high dimensional, and the boundaries between groups
will be high dimensional and perhaps curvilinear or
multi-faceted. This package implements methods for
understanding the division of space between the groups.
Author: Hadley Wickham
Maintainer: Hadley Wickham
classifly-0.3/classifly/load.r |only
classifly-0.3/classifly/man/olives.rd |only
classifly-0.4/classifly/DESCRIPTION | 31 +--
classifly-0.4/classifly/LICENSE |only
classifly-0.4/classifly/MD5 |only
classifly-0.4/classifly/NAMESPACE | 41 ++--
classifly-0.4/classifly/NEWS |only
classifly-0.4/classifly/R/classification.r | 95 +++++----
classifly-0.4/classifly/R/data.r | 28 +-
classifly-0.4/classifly/R/explore.r | 87 ++++-----
classifly-0.4/classifly/R/knn.r | 9
classifly-0.4/classifly/R/olives.R |only
classifly-0.4/classifly/R/rescaler.R |only
classifly-0.4/classifly/man/advantage.Rd | 26 +-
classifly-0.4/classifly/man/classifly.Rd | 115 ++++++------
classifly-0.4/classifly/man/classify.Rd | 32 +--
classifly-0.4/classifly/man/explore.Rd | 67 ++++--
classifly-0.4/classifly/man/generate_classification_data.Rd | 57 +++--
classifly-0.4/classifly/man/generate_data.Rd | 25 +-
classifly-0.4/classifly/man/knnf.Rd | 24 +-
classifly-0.4/classifly/man/olives.Rd |only
classifly-0.4/classifly/man/posterior.Rd | 25 +-
classifly-0.4/classifly/man/simvar.Rd | 39 ++--
classifly-0.4/classifly/man/variables.Rd | 30 +--
24 files changed, 394 insertions(+), 337 deletions(-)
Title: Logistic Regression
Diff between BayesLogit versions 0.2-4 dated 2013-05-22 and 0.3 dated 2014-04-23
Description: The BayesLogit package does posterior simulation for binomial and
multinomial logistic regression using the Polya-Gamma latent variable
technique. This method is fully automatic, exact, and fast. A routine to
efficiently sample from the Polya-Gamma class of distributions is included.
Author: Nicholas G. Polson, James G. Scott, and Jesse Windle
Maintainer: Jesse Windle
DESCRIPTION | 17 -
MD5 | 51 +--
R/AR1.R | 5
R/ComputeMixture.R | 683 ++++++++++++++++++++++++-------------------------
R/DynExpFamMHWrapper.R |only
R/FFBS.R | 5
R/Indicators.R | 19 -
R/KS.R | 18 -
R/Logit-Indicators.R | 5
R/LogitPG.R | 19 -
R/LogitWrapper.R | 22 -
R/MultLogitPG.R | 18 -
R/PG.R | 18 -
R/logit-EM.R | 18 -
R/logit-combine.R | 5
inst/Dynamic/NAMESPACE | 3
inst/Dynamic/R/CUBS.R | 5
src/CUBS.cpp | 8
src/CUBS.h | 5
src/DynExpFamMH.cpp |only
src/DynExpFamMH.h |only
src/LogitWrapper.cpp | 609 +++++++++++++++++++++----------------------
src/LogitWrapper.h | 52 +--
src/Makevars | 3
src/PolyaGamma.cpp | 6
src/RNG.cpp | 468 ++++++++++++++++++---------------
src/RNG.h | 49 ++-
src/RRNG.h | 2
28 files changed, 1091 insertions(+), 1022 deletions(-)
Title: Bridge Regression
Diff between BayesBridge versions 0.2-1 dated 2013-05-08 and 0.4 dated 2014-04-23
Description: This package implements Bayesian bridge regression.
Author: Nicholas G. Polson, James G. Scott, and Jesse Windle
Maintainer: Jesse Windle
BayesBridge-0.2-1/BayesBridge/MYNOTES |only
BayesBridge-0.2-1/BayesBridge/inst/include |only
BayesBridge-0.4/BayesBridge/DESCRIPTION | 8
BayesBridge-0.4/BayesBridge/MD5 | 64 --
BayesBridge-0.4/BayesBridge/R/BridgeNMix.R | 2
BayesBridge-0.4/BayesBridge/R/BridgeWrapper.R | 433 ++++++++++-------
BayesBridge-0.4/BayesBridge/inst/CITATION | 14
BayesBridge-0.4/BayesBridge/man/bridge.reg.Rd | 3
BayesBridge-0.4/BayesBridge/man/rtnorm.Rd | 3
BayesBridge-0.4/BayesBridge/src/BridgeRegression.cpp | 3
BayesBridge-0.4/BayesBridge/src/BridgeWrapper.cpp | 181 +++++++
BayesBridge-0.4/BayesBridge/src/BridgeWrapper.h | 10
BayesBridge-0.4/BayesBridge/src/Matrix.h | 4
BayesBridge-0.4/BayesBridge/src/MatrixFrame.cpp | 4
BayesBridge-0.4/BayesBridge/src/MatrixFrame.h | 77 ++-
BayesBridge-0.4/BayesBridge/src/RNG.cpp | 468 ++++++++++---------
BayesBridge-0.4/BayesBridge/src/RNG.h | 49 +
BayesBridge-0.4/BayesBridge/src/RRNG.h | 2
18 files changed, 862 insertions(+), 463 deletions(-)
Title: Density surface modelling of distance sampling data
Diff between dsm versions 2.1.3 dated 2013-08-20 and 2.2.3 dated 2014-04-23
Description: This library implements density surface modelling of line
transect data, based on the methods of Hedley et al. (2004). Some
recent developments in the literature have also be incorporated.
Outputs are point and interval estimates of population abundance
and density.
Please note that this version of dsm WILL NOT work with the Windows
package DISTANCE earlier than version 6.2. For a version that works with
DISTANCE 6.1, please go to:
https://github.com/DistanceDevelopment/dsm-distance-6.1
For the latest version of dsm, please use the github version at the URL
listed below.
Miller, D. L., M. L. Burt, E. Rexstad and L. Thomas. 2013. Spatial
models for distance sampling data: recent developments and future
directions. Methods in Ecology and Evolution
Hedley, S.L., S.T. Buckland and D.L. Borchers. 2004. "Spatial
distance sampling methods" pp 48-70 in Advanced Distance Sampling,
Buckland, S.T. et al. (eds). Oxford University Press.
Author: David L. Miller, Eric Rexstad, Louise Burt, Mark V. Bravington,
Sharon Hedley.
Maintainer: David Lawrence Miller
dsm-2.1.3/dsm/README |only
dsm-2.1.3/dsm/inst |only
dsm-2.1.3/dsm/tests/run-all.R |only
dsm-2.2.3/dsm/DESCRIPTION | 29 ++---
dsm-2.2.3/dsm/MD5 | 90 ++++++++--------
dsm-2.2.3/dsm/NAMESPACE | 24 ++--
dsm-2.2.3/dsm/NEWS | 18 ++-
dsm-2.2.3/dsm/R/block.info.per.su.R | 8 -
dsm-2.2.3/dsm/R/check.cols.R | 11 +-
dsm-2.2.3/dsm/R/dsm-package.R | 11 +-
dsm-2.2.3/dsm/R/dsm.R | 110 +++++++++++++-------
dsm-2.2.3/dsm/R/dsm.var.gam.R | 5
dsm-2.2.3/dsm/R/dsm.var.movblk.R | 122 ++++++++++++----------
dsm-2.2.3/dsm/R/generate.mb.sample.R | 25 ++--
dsm-2.2.3/dsm/R/latlong2km.R | 4
dsm-2.2.3/dsm/R/make.data.R | 34 ++++--
dsm-2.2.3/dsm/R/plot.dsm.var.R | 1
dsm-2.2.3/dsm/R/predict.dsm.R | 22 +---
dsm-2.2.3/dsm/R/rqgam.check.R |only
dsm-2.2.3/dsm/R/zzz.R | 24 ----
dsm-2.2.3/dsm/README.md |only
dsm-2.2.3/dsm/man/block.info.per.su.Rd | 20 +--
dsm-2.2.3/dsm/man/check.cols.Rd | 12 +-
dsm-2.2.3/dsm/man/dsm-data.Rd | 35 +++---
dsm-2.2.3/dsm/man/dsm-package.Rd | 2
dsm-2.2.3/dsm/man/dsm.Rd | 146 +++++++++++++++++----------
dsm-2.2.3/dsm/man/dsm.cor.Rd | 16 +-
dsm-2.2.3/dsm/man/dsm.var.gam.Rd | 34 ++----
dsm-2.2.3/dsm/man/dsm.var.movblk.Rd | 16 +-
dsm-2.2.3/dsm/man/dsm.var.prop.Rd | 69 ++++++------
dsm-2.2.3/dsm/man/generate.ds.uncertainty.Rd | 20 +--
dsm-2.2.3/dsm/man/generate.mb.sample.Rd | 14 +-
dsm-2.2.3/dsm/man/latlong2km.Rd | 21 ++-
dsm-2.2.3/dsm/man/make.soapgrid.Rd | 14 +-
dsm-2.2.3/dsm/man/matrixnotposdef.handler.Rd | 22 ++--
dsm-2.2.3/dsm/man/mexdolphins.Rd | 30 +++--
dsm-2.2.3/dsm/man/offsets.Rd | 2
dsm-2.2.3/dsm/man/plot.dsm.Rd | 10 -
dsm-2.2.3/dsm/man/plot.dsm.var.Rd | 20 +--
dsm-2.2.3/dsm/man/predict.dsm.Rd | 31 ++---
dsm-2.2.3/dsm/man/print.dsm.Rd | 15 +-
dsm-2.2.3/dsm/man/print.dsm.var.Rd | 13 --
dsm-2.2.3/dsm/man/print.summary.dsm.var.Rd | 11 --
dsm-2.2.3/dsm/man/rqgam.check.Rd |only
dsm-2.2.3/dsm/man/summary.dsm.Rd | 10 -
dsm-2.2.3/dsm/man/summary.dsm.var.Rd | 14 +-
dsm-2.2.3/dsm/man/trim.var.Rd | 16 +-
dsm-2.2.3/dsm/tests/testthat |only
dsm-2.2.3/dsm/tests/testthat.R |only
49 files changed, 630 insertions(+), 521 deletions(-)
Title: Miscellaneous helper functions for B. Bischl.
Diff between BBmisc versions 1.5 dated 2014-01-24 and 1.6 dated 2014-04-23
Description: Miscellaneous helper functions for and from B. Bischl and
some other guys at TU Dortmund, mainly for package development.
Author: Bernd Bischl
Maintainer: Bernd Bischl
BBmisc-1.5/BBmisc/R/deprecated.R |only
BBmisc-1.5/BBmisc/R/first_last.R |only
BBmisc-1.5/BBmisc/inst |only
BBmisc-1.5/BBmisc/man/convertDfCols.Rd |only
BBmisc-1.5/BBmisc/man/do.call2.Rd |only
BBmisc-1.5/BBmisc/man/first.Rd |only
BBmisc-1.5/BBmisc/man/listToShortString.Rd |only
BBmisc-1.5/BBmisc/man/stringsAsFactors.Rd |only
BBmisc-1.5/BBmisc/src/first_last.c |only
BBmisc-1.5/BBmisc/src/first_last.h |only
BBmisc-1.6/BBmisc/DESCRIPTION | 7
BBmisc-1.6/BBmisc/MD5 | 254 +++++++++---------
BBmisc-1.6/BBmisc/NAMESPACE | 31 +-
BBmisc-1.6/BBmisc/NEWS | 25 +
BBmisc-1.6/BBmisc/R/asMatrix.R |only
BBmisc-1.6/BBmisc/R/binPack.R | 8
BBmisc-1.6/BBmisc/R/btwn.R |only
BBmisc-1.6/BBmisc/R/catf.R | 2
BBmisc-1.6/BBmisc/R/checkArg.R | 12
BBmisc-1.6/BBmisc/R/checkListElementClass.R | 2
BBmisc-1.6/BBmisc/R/chunk.R | 76 +++--
BBmisc-1.6/BBmisc/R/convertDataFrameCols.R | 2
BBmisc-1.6/BBmisc/R/convertInteger.R | 6
BBmisc-1.6/BBmisc/R/convertListOfRowsToDataFrame.R |only
BBmisc-1.6/BBmisc/R/convertMatrixType.R |only
BBmisc-1.6/BBmisc/R/convertRowsToList.R | 56 ++-
BBmisc-1.6/BBmisc/R/dapply.R |only
BBmisc-1.6/BBmisc/R/do.call2.R | 42 +-
BBmisc-1.6/BBmisc/R/dropNamed.R | 2
BBmisc-1.6/BBmisc/R/extractSubList.R | 35 +-
BBmisc-1.6/BBmisc/R/factor.R | 4
BBmisc-1.6/BBmisc/R/getFirstLast.R |only
BBmisc-1.6/BBmisc/R/getMaxColIndex.R | 2
BBmisc-1.6/BBmisc/R/insert.R | 4
BBmisc-1.6/BBmisc/R/isScalarValue.R | 57 +++-
BBmisc-1.6/BBmisc/R/is_error.R | 4
BBmisc-1.6/BBmisc/R/load2.R | 2
BBmisc-1.6/BBmisc/R/makeDataFrame.R | 13
BBmisc-1.6/BBmisc/R/makeProgressBar.R | 82 +++--
BBmisc-1.6/BBmisc/R/messagef.R | 2
BBmisc-1.6/BBmisc/R/names2.R | 2
BBmisc-1.6/BBmisc/R/printToChar.R | 2
BBmisc-1.6/BBmisc/R/rangeVal.R |only
BBmisc-1.6/BBmisc/R/rowLapply.R | 34 +-
BBmisc-1.6/BBmisc/R/save2.R | 2
BBmisc-1.6/BBmisc/R/sortByCol.R |only
BBmisc-1.6/BBmisc/R/stopf.R | 2
BBmisc-1.6/BBmisc/R/symdiff.R |only
BBmisc-1.6/BBmisc/R/toRangeStr.R | 2
BBmisc-1.6/BBmisc/R/vapply.R |only
BBmisc-1.6/BBmisc/R/warningf.R | 2
BBmisc-1.6/BBmisc/R/which.first.R |only
BBmisc-1.6/BBmisc/R/zzz.R | 3
BBmisc-1.6/BBmisc/R/zzz_deprecated.R |only
BBmisc-1.6/BBmisc/man/asMatrixCols.Rd |only
BBmisc-1.6/BBmisc/man/btwn.Rd |only
BBmisc-1.6/BBmisc/man/cFactor.Rd | 4
BBmisc-1.6/BBmisc/man/catf.Rd | 2
BBmisc-1.6/BBmisc/man/checkArg.Rd | 12
BBmisc-1.6/BBmisc/man/checkListElementClass.Rd | 2
BBmisc-1.6/BBmisc/man/chunk.Rd | 30 +-
BBmisc-1.6/BBmisc/man/convertDataFrameCols.Rd | 3
BBmisc-1.6/BBmisc/man/convertListOfRowsToDataFrame.Rd |only
BBmisc-1.6/BBmisc/man/convertMatrixType.Rd |only
BBmisc-1.6/BBmisc/man/convertRowsToList.Rd | 27 +
BBmisc-1.6/BBmisc/man/dapply.Rd |only
BBmisc-1.6/BBmisc/man/deprecated.Rd |only
BBmisc-1.6/BBmisc/man/extractSubList.Rd | 13
BBmisc-1.6/BBmisc/man/getFirst.Rd |only
BBmisc-1.6/BBmisc/man/getMaxIndexOfRows.Rd | 2
BBmisc-1.6/BBmisc/man/insert.Rd | 4
BBmisc-1.6/BBmisc/man/is.error.Rd | 4
BBmisc-1.6/BBmisc/man/isScalarValue.Rd | 29 +-
BBmisc-1.6/BBmisc/man/load2.Rd | 2
BBmisc-1.6/BBmisc/man/makeDataFrame.Rd | 7
BBmisc-1.6/BBmisc/man/makeProgressBar.Rd | 46 +--
BBmisc-1.6/BBmisc/man/messagef.Rd | 2
BBmisc-1.6/BBmisc/man/names2.Rd | 2
BBmisc-1.6/BBmisc/man/printToChar.Rd | 2
BBmisc-1.6/BBmisc/man/rangeVal.Rd |only
BBmisc-1.6/BBmisc/man/rowLapply.Rd | 10
BBmisc-1.6/BBmisc/man/save2.Rd | 2
BBmisc-1.6/BBmisc/man/sortByCol.Rd |only
BBmisc-1.6/BBmisc/man/stopf.Rd | 2
BBmisc-1.6/BBmisc/man/symdiff.Rd |only
BBmisc-1.6/BBmisc/man/toRangeStr.Rd | 2
BBmisc-1.6/BBmisc/man/vlapply.Rd |only
BBmisc-1.6/BBmisc/man/warningf.Rd | 2
BBmisc-1.6/BBmisc/man/which.first.Rd |only
BBmisc-1.6/BBmisc/tests/run-all.R | 4
BBmisc-1.6/BBmisc/tests/testthat |only
91 files changed, 639 insertions(+), 355 deletions(-)
Title: Create "Table 1" to describe baseline characteristics
Diff between tableone versions 0.4.0 dated 2014-03-30 and 0.5.0 dated 2014-04-23
Description: This package creates "Table 1", i.e., description of baseline
patient characteristics, which is essential in every medical research. This
package provides functions to create such summaries for continuous and
categorical variables, optionally with subgroup comparisons. The package
was inspired by and based on descriptive statistics functions in Deducer,
a Java-based GUI package by Ian Fellows. This package does not require GUI
or Java, and intended for command-line users.
Author: Kazuki Yoshida, Justin Bohn.
Maintainer: Kazuki Yoshida
DESCRIPTION | 8 ++++----
MD5 | 34 +++++++++++++++++-----------------
NEWS | 10 ++++++++++
R/CreateCatTable.R | 3 +++
R/CreateContTable.R | 3 +++
R/CreateTableOne.R | 4 ++++
R/modules.R | 14 ++++++++++++++
R/print.CatTable.R | 8 ++++++++
R/print.ContTable.R | 8 ++++++++
R/print.TableOne.R | 15 +++++++++++++++
R/tableone-package.R | 4 ++++
man/CreateCatTable.Rd | 3 +++
man/CreateContTable.Rd | 3 +++
man/CreateTableOne.Rd | 4 ++++
man/print.CatTable.Rd | 13 ++++++++++---
man/print.ContTable.Rd | 12 ++++++++++--
man/print.TableOne.Rd | 19 +++++++++++++++++--
man/tableone-package.Rd | 4 ++++
18 files changed, 141 insertions(+), 28 deletions(-)
Title: Flexibly reshape data: a reboot of the reshape package.
Diff between reshape2 versions 1.2.2 dated 2012-12-04 and 1.4 dated 2014-04-23
Description: Reshape lets you flexibly restructure and
aggregate data using just two functions: melt and cast.
Author: Hadley Wickham
Maintainer: Hadley Wickham
reshape2-1.2.2/reshape2/NEWS |only
reshape2-1.2.2/reshape2/inst/tests |only
reshape2-1.2.2/reshape2/tests/test-all.R |only
reshape2-1.4/reshape2/DESCRIPTION | 29 +++---
reshape2-1.4/reshape2/LICENSE |only
reshape2-1.4/reshape2/MD5 | 62 ++++++++------
reshape2-1.4/reshape2/NAMESPACE | 4
reshape2-1.4/reshape2/R/RcppExports.R |only
reshape2-1.4/reshape2/R/cast.r | 42 ++++++----
reshape2-1.4/reshape2/R/melt.r | 113 ++++++++++++++++++---------
reshape2-1.4/reshape2/R/recast.r | 8 -
reshape2-1.4/reshape2/R/reshape.r |only
reshape2-1.4/reshape2/R/utils.r | 53 ++++++++++++
reshape2-1.4/reshape2/README.md | 17 +++-
reshape2-1.4/reshape2/man/add_margins.Rd | 18 ++--
reshape2-1.4/reshape2/man/cast.Rd | 99 +++++++++++------------
reshape2-1.4/reshape2/man/colsplit.Rd | 16 +--
reshape2-1.4/reshape2/man/french_fries.Rd | 29 ++++--
reshape2-1.4/reshape2/man/guess_value.Rd | 13 +--
reshape2-1.4/reshape2/man/margins.Rd | 25 ++---
reshape2-1.4/reshape2/man/melt.Rd | 32 ++++---
reshape2-1.4/reshape2/man/melt.array.Rd | 42 ++++++----
reshape2-1.4/reshape2/man/melt.data.frame.Rd | 56 +++++++------
reshape2-1.4/reshape2/man/melt.default.Rd | 27 +++---
reshape2-1.4/reshape2/man/melt.list.Rd | 19 +++-
reshape2-1.4/reshape2/man/melt_check.Rd | 28 +++---
reshape2-1.4/reshape2/man/parse_formula.Rd | 24 ++---
reshape2-1.4/reshape2/man/recast.Rd | 24 ++---
reshape2-1.4/reshape2/man/smiths.Rd | 8 +
reshape2-1.4/reshape2/man/tips.Rd | 34 +++++---
reshape2-1.4/reshape2/po |only
reshape2-1.4/reshape2/src |only
reshape2-1.4/reshape2/tests/testthat |only
reshape2-1.4/reshape2/tests/testthat.R |only
34 files changed, 509 insertions(+), 313 deletions(-)
Title: Panel Data Analysis with Heterogeneous Time Trends
Diff between phtt versions 3.1 dated 2013-10-09 and 3.1.1 dated 2014-04-23
Description: The R-package 'phtt' provides estimation procedures for panel data with large dimensions n, T, and general forms of unobservable heterogeneous effects. Particularly, the estimation procedures are those of Bai (2009) and Kneip, Sickles, and Song (2012), which complement one another very well: both models assume the unobservable heterogeneous effects to have a factor structure. The method of Bai (2009) assumes that the factors are stationary, whereas the method of Kneip et al. (2012) allows the factors to be non-stationary. Additionally, the 'phtt' package provides a wide range of dimensionality criteria in order to estimate the number of the unobserved factors simultaneously with the remaining model parameters.
Author: Oualid Bada, Dominik Liebl
Maintainer: Dominik Liebl
phtt-3.1.1/phtt/DESCRIPTION | 8 ++++----
phtt-3.1.1/phtt/MD5 | 14 ++++++++++----
phtt-3.1.1/phtt/build |only
phtt-3.1.1/phtt/inst/CITATION |only
phtt-3.1.1/phtt/inst/doc/phtt_Guide.R |only
phtt-3.1.1/phtt/inst/doc/phtt_Guide.Snw |only
phtt-3.1.1/phtt/inst/doc/phtt_Guide.pdf |only
phtt-3.1.1/phtt/man/Eup.Rd | 3 +--
phtt-3.1.1/phtt/man/OptDim.Rd | 2 +-
phtt-3.1.1/phtt/vignettes |only
phtt-3.1/phtt/inst/doc/phtt.pdf |only
11 files changed, 16 insertions(+), 11 deletions(-)
Title: Microsoft Word, Microsoft Powerpoint and HTML documents
generation from R
Diff between ReporteRs versions 0.3 dated 2014-03-03 and 0.5.2 dated 2014-04-23
Description: An R package for creating Microsoft Word document (>=2007),
Microsoft Powerpoint document (>=2007) and HTML documents from R. There are
several features to let you format and present R outputs ; e.g. Editable
Vector Graphics, functions for complex tables reporting, reuse of corporate
template document (*.docx and *.pptx). You can use the package as a tool
for fast reporting and as a tool for reporting automation. The package does
not require any installation of Microsoft product to be able to write
Microsoft files (docx and pptx).
Author: David Gohel
Maintainer: David Gohel
ReporteRs-0.3/ReporteRs/inst/java/ReporteRs-0.3.jar |only
ReporteRs-0.3/ReporteRs/src/javasrc/org/lysis/reporters/html4r/elements/SetOfPlots.java |only
ReporteRs-0.5.2/ReporteRs/DESCRIPTION | 10
ReporteRs-0.5.2/ReporteRs/MD5 | 189
ReporteRs-0.5.2/ReporteRs/NAMESPACE | 2
ReporteRs-0.5.2/ReporteRs/NEWS | 57
ReporteRs-0.5.2/ReporteRs/R/01_tools.R | 39
ReporteRs-0.5.2/ReporteRs/R/FlexCell.R | 5
ReporteRs-0.5.2/ReporteRs/R/FlexRow.R | 4
ReporteRs-0.5.2/ReporteRs/R/FlexTable.R | 127
ReporteRs-0.5.2/ReporteRs/R/ReporteRs.R | 4
ReporteRs-0.5.2/ReporteRs/R/addDate.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addFlexTable.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addFlexTable.html.R | 4
ReporteRs-0.5.2/ReporteRs/R/addFlexTable.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addFooter.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addImage.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addImage.html.R | 12
ReporteRs-0.5.2/ReporteRs/R/addImage.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addPage.html.R | 109
ReporteRs-0.5.2/ReporteRs/R/addPageBreak.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addPageNumber.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addParagraph.docx.R | 16
ReporteRs-0.5.2/ReporteRs/R/addParagraph.html.R | 4
ReporteRs-0.5.2/ReporteRs/R/addParagraph.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addPlot.docx.R | 26
ReporteRs-0.5.2/ReporteRs/R/addPlot.html.R | 230
ReporteRs-0.5.2/ReporteRs/R/addPlot.pptx.R | 14
ReporteRs-0.5.2/ReporteRs/R/addRScript.html.R | 2
ReporteRs-0.5.2/ReporteRs/R/addSlide.pptx.R | 8
ReporteRs-0.5.2/ReporteRs/R/addSubtitle.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addTOC.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addTable.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addTable.html.R | 4
ReporteRs-0.5.2/ReporteRs/R/addTable.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addTitle.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/addTitle.html.R | 4
ReporteRs-0.5.2/ReporteRs/R/addTitle.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/deleteBookmark.R | 4
ReporteRs-0.5.2/ReporteRs/R/docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/drawingML.R | 233
ReporteRs-0.5.2/ReporteRs/R/html.R | 4
ReporteRs-0.5.2/ReporteRs/R/java_description.R | 2
ReporteRs-0.5.2/ReporteRs/R/pot.R | 10
ReporteRs-0.5.2/ReporteRs/R/pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/print.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/print.html.R | 4
ReporteRs-0.5.2/ReporteRs/R/print.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/set_of_pot.R | 16
ReporteRs-0.5.2/ReporteRs/R/slide.layouts.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/R/styles.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/textProperties.R | 4
ReporteRs-0.5.2/ReporteRs/R/themes.tableProperties.R | 22
ReporteRs-0.5.2/ReporteRs/R/writeDoc.docx.R | 4
ReporteRs-0.5.2/ReporteRs/R/writeDoc.html.R | 4
ReporteRs-0.5.2/ReporteRs/R/writeDoc.pptx.R | 4
ReporteRs-0.5.2/ReporteRs/demo/bookmark.R | 102
ReporteRs-0.5.2/ReporteRs/inst/COPYRIGHTS | 5
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/css/bootstrap-theme.css | 792
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/css/bootstrap-theme.min.css | 12
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/css/bootstrap.min.css |12954 +++++-----
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/css/highlight.css | 118
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/fonts/glyphicons-halflings-regular.svg | 456
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/js/bootstrap.min.js | 12
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/js/g.raphael-min.js |only
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/js/jquery.min.js | 10
ReporteRs-0.5.2/ReporteRs/inst/bootstrap/js/raphael-min.js | 20
ReporteRs-0.5.2/ReporteRs/inst/java/ReporteRs-0.5.jar |only
ReporteRs-0.5.2/ReporteRs/man/FlexTable.Rd | 13
ReporteRs-0.5.2/ReporteRs/man/ReporteRs-package.Rd | 2
ReporteRs-0.5.2/ReporteRs/man/add.plot.interactivity.Rd |only
ReporteRs-0.5.2/ReporteRs/man/addFlexCellContent.Rd |only
ReporteRs-0.5.2/ReporteRs/man/addImage.html.Rd | 8
ReporteRs-0.5.2/ReporteRs/man/addParagraph.docx.Rd | 9
ReporteRs-0.5.2/ReporteRs/man/addPlot.html.Rd | 17
ReporteRs-0.5.2/ReporteRs/man/pot.Rd | 2
ReporteRs-0.5.2/ReporteRs/src/DOCX.cpp | 286
ReporteRs-0.5.2/ReporteRs/src/DOCX.h | 12
ReporteRs-0.5.2/ReporteRs/src/PPTX.cpp | 264
ReporteRs-0.5.2/ReporteRs/src/PPTX.h | 10
ReporteRs-0.5.2/ReporteRs/src/RAPHAEL.cpp | 245
ReporteRs-0.5.2/ReporteRs/src/RAPHAEL.h | 10
ReporteRs-0.5.2/ReporteRs/src/colors.cpp |only
ReporteRs-0.5.2/ReporteRs/src/colors.h |only
ReporteRs-0.5.2/ReporteRs/src/common.cpp | 103
ReporteRs-0.5.2/ReporteRs/src/common.h | 9
ReporteRs-0.5.2/ReporteRs/src/datastruct.h | 9
ReporteRs-0.5.2/ReporteRs/src/dml_utils.cpp |only
ReporteRs-0.5.2/ReporteRs/src/dml_utils.h |only
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/docs/HTMLPageContent.java | 4
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/docs/docx4R.java | 2
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/html4r/elements/ImagesList.java |only
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/pptx4r/elements/Date.java | 3
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/pptx4r/elements/Footer.java | 9
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/pptx4r/elements/SlideNumber.java | 4
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/pptx4r/elements/SubTitle.java | 4
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/tables/FlexTable.java | 13
ReporteRs-0.5.2/ReporteRs/src/javasrc/org/lysis/reporters/texts/ParagraphsSection.java | 4
ReporteRs-0.5.2/ReporteRs/src/raphael_utils.cpp |only
ReporteRs-0.5.2/ReporteRs/src/raphael_utils.h |only
ReporteRs-0.5.2/ReporteRs/src/utils.cpp | 378
ReporteRs-0.5.2/ReporteRs/src/utils.h | 32
102 files changed, 8771 insertions(+), 8427 deletions(-)
Title: Generation of regular factorial designs
Diff between planor versions 0.1-10 dated 2013-09-20 and 0.1-12 dated 2014-04-23
Description: planor is a package dedicated to the automatic generation of regular factorial designs, including fractional designs, orthogonal block designs,
row-column designs and split-plots.
Author: Hervé Monod, Annie Bouvier, André Kobilinsky
Maintainer: Annie Bouvier
planor-0.1-10/planor/tests/BU_mai2011_2.R.save |only
planor-0.1-10/planor/tests/Kobi2.OR |only
planor-0.1-10/planor/tests/README |only
planor-0.1-10/planor/tests/Touzeau4.R.agarder |only
planor-0.1-10/planor/tests/Touzeau4.Rout.save |only
planor-0.1-10/planor/tests/foodweb.png |only
planor-0.1-12/planor/ChangeLog | 8
planor-0.1-12/planor/DESCRIPTION | 10
planor-0.1-12/planor/MD5 | 83 --
planor-0.1-12/planor/NAMESPACE | 1
planor-0.1-12/planor/R/basep.R | 141 +--
planor-0.1-12/planor/R/bigm.R | 101 +-
planor-0.1-12/planor/R/debug.R | 8
planor-0.1-12/planor/R/designfactors.R | 13
planor-0.1-12/planor/R/designkey.R | 228 +----
planor-0.1-12/planor/R/generic.R | 68 -
planor-0.1-12/planor/R/keymatrix.R | 189 +---
planor-0.1-12/planor/R/keyring.R | 124 +--
planor-0.1-12/planor/R/listofdesignkeys.R | 264 ++----
planor-0.1-12/planor/R/listofkeyrings.R | 317 ++-----
planor-0.1-12/planor/R/makedesignkey.R | 8
planor-0.1-12/planor/R/planor.R | 868 ++++++++++-----------
planor-0.1-12/planor/R/planordesign.R | 20
planor-0.1-12/planor/R/randomize.R | 66 -
planor-0.1-12/planor/inst/doc/planor-manual.pdf |binary
planor-0.1-12/planor/inst/doc/planorVignette.pdf |binary
planor-0.1-12/planor/man/alias-methods.Rd | 2
planor-0.1-12/planor/man/planordesign-class.Rd | 1
planor-0.1-12/planor/src/bigm.cpp | 93 +-
planor-0.1-12/planor/src/planor.cpp | 163 +--
planor-0.1-12/planor/tests/AB.Rout.save | 4
planor-0.1-12/planor/tests/BU_mai2011_2.Rout.save | 4
planor-0.1-12/planor/tests/Kobi0.Rout.save | 4
planor-0.1-12/planor/tests/Kobi1.Rout.save | 4
planor-0.1-12/planor/tests/Kobi2.Rout.save | 4
planor-0.1-12/planor/tests/Kobi3.Rout.save | 4
planor-0.1-12/planor/tests/KobiRecursive.Rout.save | 4
planor-0.1-12/planor/tests/NewKobi1.Rout.save | 4
planor-0.1-12/planor/tests/Touzeau2.Rout.save | 4
planor-0.1-12/planor/tests/exsimple.Rout.save | 4
planor-0.1-12/planor/tests/generate.Rout.save | 12
planor-0.1-12/planor/tests/haies.Rout.save | 4
planor-0.1-12/planor/tests/mixkey.Rout.save | 4
planor-0.1-12/planor/tests/noineligible.Rout.save | 4
planor-0.1-12/planor/tests/testSummary.Rout.save | 4
planor-0.1-12/planor/vignettes/planorVignette.tex |only
46 files changed, 1236 insertions(+), 1608 deletions(-)
Title: Analysis with the Constant Elasticity of Substitution (CES)
function
Diff between micEconCES versions 0.9-6 dated 2012-01-03 and 0.9-8 dated 2014-04-23
Description: Tools for economic analysis and economic modelling
with a Constant Elasticity of Substitution (CES) function
Author: Arne Henningsen and Geraldine Henningsen
Maintainer: Arne Henningsen
micEconCES-0.9-6/micEconCES/tests/GermanIndustry.R |only
micEconCES-0.9-6/micEconCES/tests/GermanIndustry.Rout.save |only
micEconCES-0.9-6/micEconCES/tests/rhoZero.R |only
micEconCES-0.9-6/micEconCES/tests/rhoZero.Rout.save |only
micEconCES-0.9-6/micEconCES/tests/rhoZeroMult.R |only
micEconCES-0.9-6/micEconCES/tests/rhoZeroMult.Rout.save |only
micEconCES-0.9-6/micEconCES/tests/simData.R |only
micEconCES-0.9-6/micEconCES/tests/simData.Rout.save |only
micEconCES-0.9-8/micEconCES/DESCRIPTION | 24 +-
micEconCES-0.9-8/micEconCES/MD5 | 41 +---
micEconCES-0.9-8/micEconCES/NAMESPACE | 13 +
micEconCES-0.9-8/micEconCES/NEWS | 5
micEconCES-0.9-8/micEconCES/R/zzz.R |only
micEconCES-0.9-8/micEconCES/build |only
micEconCES-0.9-8/micEconCES/inst/doc/CES.R |only
micEconCES-0.9-8/micEconCES/inst/doc/CES.Rnw | 1
micEconCES-0.9-8/micEconCES/inst/doc/CES.pdf |binary
micEconCES-0.9-8/micEconCES/man/cesCalc.Rd | 4
micEconCES-0.9-8/micEconCES/man/cesEst-methods.Rd | 2
micEconCES-0.9-8/micEconCES/man/cesEst.Rd | 10
micEconCES-0.9-8/micEconCES/man/plot.cesEst.Rd | 2
micEconCES-0.9-8/micEconCES/man/summary.cesEst.Rd | 2
micEconCES-0.9-8/micEconCES/tests/SunHenKum.R | 1
micEconCES-0.9-8/micEconCES/tests/SunHenKum.Rout.save | 104 ++++------
micEconCES-0.9-8/micEconCES/tests/xMult.R | 3
micEconCES-0.9-8/micEconCES/tests/xMult.Rout.save | 132 ++++---------
micEconCES-0.9-8/micEconCES/vignettes/CES.Rnw | 1
27 files changed, 153 insertions(+), 192 deletions(-)
Title: Fitting Ising models using the eLasso method
Diff between IsingFit versions 0.1.2 dated 2014-02-17 and 0.2.0 dated 2014-04-23
Description: This network estimation procedure eLasso, which is based on the Ising model, combines l1-regularized logistic regression with model selection based on the Extended Bayesian Information Criterion (EBIC). EBIC is a fit measure that identifies relevant relationships between variables. The resulting network consists of variables as nodes and relevant relationships as edges. Can deal with binary data.
Author: Claudia van Borkulo, Sacha Epskamp, with contributions from Alexander Robitzsch
Maintainer: Claudia van Borkulo
DESCRIPTION | 12 ++++----
MD5 | 10 +++---
R/IsingFit.R | 62 ++++++++++++++++++++++++++++---------------
R/exporttoNetLogo.IsingFit.R | 36 +++++++-----------------
man/isingfit-package.rd | 16 +++++------
man/isingfit.rd | 18 +++++++++---
6 files changed, 84 insertions(+), 70 deletions(-)
Title: Extended and enhanced Hierarchical Logistic Regression models
(so called Huisman-Olff-Fresco models).
Diff between eHOF versions 1.3 dated 2013-12-14 and 1.4 dated 2014-04-23
Description: Hierarchical logistic species response curves along one-dimensional gradients including no response, monotone, plateau, unimodal and bimodal models.
Author: Florian Jansen, Jari Oksanen
Maintainer: Florian Jansen
eHOF-1.3/eHOF/.Rinstignore |only
eHOF-1.4/eHOF/DESCRIPTION | 8 ++++----
eHOF-1.4/eHOF/MD5 | 24 ++++++++++++------------
eHOF-1.4/eHOF/NAMESPACE | 5 ++++-
eHOF-1.4/eHOF/R/HOF.default.r | 23 ++++++++++++-----------
eHOF-1.4/eHOF/R/pick.model.r | 8 ++++----
eHOF-1.4/eHOF/R/plot.HOF.r | 4 ++--
eHOF-1.4/eHOF/R/print.HOF.list.r | 4 ++--
eHOF-1.4/eHOF/R/print.HOF.r | 22 ++++++++++++++--------
eHOF-1.4/eHOF/build/vignette.rds |binary
eHOF-1.4/eHOF/inst/CITATION | 2 +-
eHOF-1.4/eHOF/inst/ChangeLog | 5 ++++-
eHOF-1.4/eHOF/inst/doc/eHOF.pdf |binary
eHOF-1.4/eHOF/man/HOF.Rd | 4 ++--
14 files changed, 61 insertions(+), 48 deletions(-)
Title: Bivariate Copula Based Regression Models
Diff between CopulaRegression versions 0.1-3 dated 2013-03-13 and 0.1-4 dated 2014-04-23
More information about CopulaRegression at CRAN
Description: This R-packages presents a bivariate, copula-based model
for the joint distribution of a pair of continuous and discrete
random variables. The two marginal random variables are modeled
via generalized linear models, and their joint distribution
(represented by a parametric copula family) is estimated using
maximum-likelihood techniques.
Author: Nicole Kraemer, Daniel Silvestrini
Maintainer: Nicole Kraemer
DESCRIPTION | 12 +-
MD5 | 38 +++---
NAMESPACE | 11 +-
inst/CITATION | 14 +-
inst/ChangeLog | 5
man/CopulaRegression-package.Rd | 58 +++++-----
man/copreg.Rd | 220 ++++++++++++++++++++--------------------
man/density_conditional.Rd | 2
man/density_joint.Rd | 2
man/dpolicy_loss.Rd | 125 +++++++++++-----------
man/epolicy_loss.Rd | 123 +++++++++++-----------
man/loglik_joint.Rd | 5
man/mle_joint.Rd | 4
man/mle_marginal.Rd | 134 ++++++++++++------------
man/ppolicy_loss.Rd | 119 ++++++++++-----------
man/predict.copreg.Rd | 130 +++++++++++------------
man/qpolicy_loss.Rd | 117 ++++++++++-----------
man/simulate_joint.Rd | 121 +++++++++++-----------
man/simulate_regression_data.Rd | 2
man/vuongtest.Rd | 138 ++++++++++++-------------
20 files changed, 700 insertions(+), 680 deletions(-)
Permanent link
Title: SNPs-based whole genome association studies
Diff between SNPassoc versions 1.9-1 dated 2013-11-08 and 1.9-2 dated 2014-04-23
Description: This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.
Author: Juan R Gonzlez, Llus Armengol, Elisabet Guin, Xavier Sol, and Vctor Moreno
Maintainer: Juan R Gonzlez
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/tableHWE.R | 5 +++--
inst/docs/changelog.txt | 4 ++++
4 files changed, 14 insertions(+), 9 deletions(-)
Title: A few useful functions for statisticians
Diff between packHV versions 1.7 dated 2013-07-03 and 1.8 dated 2014-04-23
Description: Various useful functions for statisticians: describe data, plot Kaplan-Meier curves with numbers of subjects at risk, compare data sets, display spaghetti-plot, build multi-contingency tables...
Author: Hugo Varet
Maintainer: Hugo Varet
DESCRIPTION | 16 +++++++---------
MD5 | 37 +++++++++++++++++++------------------
NAMESPACE | 4 +++-
R/NAMESPACE.R |only
R/cut_quanti.r | 2 +-
R/desc.r | 12 +++---------
man/IC_OR_glm.Rd | 13 ++++++-------
man/IC_RR_coxph.Rd | 12 ++++++------
man/compare.Rd | 14 +++++++-------
man/convert_factor.Rd | 8 ++++----
man/convert_zero_NA.Rd | 8 ++++----
man/cut_quanti.Rd | 8 ++++----
man/desc.Rd | 17 ++++++++---------
man/hist_boxplot.Rd | 10 +++++-----
man/multi.table.Rd | 12 ++++++------
man/packHV-package.Rd | 10 +++++-----
man/plot_km.Rd | 16 +++++++---------
man/plot_mm.Rd | 13 ++++++-------
man/plot_multi.table.Rd | 10 +++++-----
man/plot_reg.Rd | 9 ++++-----
20 files changed, 110 insertions(+), 121 deletions(-)
Title: Performing continuous-time microsimulation
Diff between MicSim versions 1.0.2 dated 2014-03-12 and 1.0.3 dated 2014-04-23
Description: The package performs continuous-time microsimulation for population projections.
Author: Sabine Zinn
Maintainer: Sabine Zinn
DESCRIPTION | 8 +-
MD5 | 18 ++---
R/auxFctMicSim.r | 2
R/convertToLong.r | 1
R/micSim.r | 92 ++++++++++++++++----------
inst/NEWS.Rd | 7 ++
man/MicSim-package.Rd | 4 -
man/convertToLongFormat.Rd | 2
man/micSim.Rd | 154 ++++++++++++++++++++++-----------------------
man/micSimParallel.Rd | 147 +++++++++++++++++++++---------------------
10 files changed, 231 insertions(+), 204 deletions(-)
Title: Cognitive Diagnosis Modeling
Diff between CDM versions 3.1-14 dated 2014-03-21 and 3.2-6 dated 2014-04-23
Description: Functions for cognitive diagnosis modeling
and multidimensional item response modeling for dichotomous
and polytomous data. This package enables the estimation of the
DINA and DINO model, the multiple group (polytomous) GDINA model,
the multiple choice DINA model and the general diagnostic model (GDM)
which contains the multidimensional linear compensatory item response
model as a special case.
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
R/gdina.R | 52 +++++++++++++++++-----------------------------------
R/gdina.dif.R | 18 +++++++++++++++---
R/gdina.dif_aux.R | 18 +++++++++++++-----
R/itemfit.sx2.R | 4 +++-
R/itemfit.sx2_aux.R | 11 ++++++++---
inst/NEWS | 22 +++++++++++++++++++---
man/CDM-package.Rd | 20 ++++++++++----------
man/gdina.Rd | 9 +++++++--
man/gdina.dif.Rd | 41 ++++++++++++++++++++++++++++++-----------
man/itemfit.sx2.Rd | 45 +++++++++++++++++++++++++--------------------
12 files changed, 162 insertions(+), 108 deletions(-)