Thu, 01 May 2014

Package robustbase updated to version 0.91-1 with previous version 0.91-0 dated 2014-04-24

Title: Basic Robust Statistics
Description: "Essential" Robust Statistics. The goal is to provide tools allowing to analyze data with robust methods. This includes regression methodology including model selections and multivariate statistics where we strive to cover the book "Robust Statistics, Theory and Methods" by Maronna, Martin and Yohai; Wiley 2006.
Author: Original code by many authors, notably Peter Rousseeuw and Christophe Croux, see file 'Copyrights'; Valentin Todorov , Andreas Ruckstuhl , Matias Salibian-Barrera , Tobias Verbeke , Manuel Koller , Martin Maechler
Maintainer: Martin Maechler

Diff between robustbase versions 0.91-0 dated 2014-04-24 and 0.91-1 dated 2014-05-01

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Package dynsurv updated to version 0.2-2 with previous version 0.1-8 dated 2012-05-24

Title: Dynamic models for survival data
Description: Functions to fit time-varying coefficient models for interval censored and right censored survival data. Three major approaches are implemented: 1) Bayesian Cox model with time-independent, time-varying or dynamic coefficients for right censored and interval censored data; 2) Spline based time-varying coefficient Cox model for right censored data; 3) Transformation model with time-varying coefficients for right censored data using estimating equations.
Author: Xiaojing Wang , Jun Yan , and Ming-Hui Chen
Maintainer: Jun Yan

Diff between dynsurv versions 0.1-8 dated 2012-05-24 and 0.2-2 dated 2014-05-01

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Package benford.analysis updated to version 0.1.1 with previous version 0.1 dated 2014-01-22

Title: Benford Analysis for data validation and forensic analytics
Description: The Benford Analysis package provides tools that make it easier to validate data using Benford's Law.
Author: Carlos Cinelli
Maintainer: Carlos Cinelli

Diff between benford.analysis versions 0.1 dated 2014-01-22 and 0.1.1 dated 2014-05-01

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Package lqmm updated to version 1.5 with previous version 1.04 dated 2014-01-09

Title: Linear Quantile Mixed Models
Description: Fit quantile regression models for independent and hierarchical data
Author: Marco Geraci
Maintainer: Marco Geraci

Diff between lqmm versions 1.04 dated 2014-01-09 and 1.5 dated 2014-05-01

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New package rClinicalCodes with initial version 1.0.0
Package: rClinicalCodes
Maintainer: David Springate
Author: David Springate
Version: 1.0.0
License: GPL-2
Title: R tools for integrating with the www.clinicalcodes.org repository
Description: R tools for integrating with the www.clinicalcodes.org web repository
LazyData: true
NeedsCompilation: no
Date: 2014-04-30
Depends: R (>= 2.15)
Imports: stringr, RCurl, XML, rjson, tm
Suggests: testthat, roxygen2
Packaged: 2014-05-01 11:32:02 UTC; mdehsds4
Repository: CRAN
Date/Publication: 2014-05-01 13:54:30

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New package paleobioDB with initial version 0.1
Package: paleobioDB
Description: paleobioDB version 0.1 has 19 functions to wrap each endpoint of the PaleobioDB API, plus 8 functions to visualize and process the fossil data. The API documentation for the Paleobiology Database can be found in .
Encoding: UTF-8
Type: Package
License: GPL-2
Title: paleobioDB: a package for downloading, visualizing and processing data from Paleobiology Database.
Version: 0.1
Date: 2014-04-02
Authors@R: c(person("Sara", "Varela", role = c("aut", "cre"), email = "svarela@paleobiogeography.org"), person("Javier", "González Hernández", role = "aut", email = "javigzz@yahoo.es"), person("Luciano", "Fabris Sgarbi", role = "aut", email = "luciano.f.sgarbi@gmail.com"))
Maintainer: Sara Varela
BugReports: https://github.com/ropensci/paleobioDB/issues
URL: https://github.com/ropensci/paleobioDB
LazyData: true
Imports: maps, raster, rjson, gtools, RCurl, plyr, scales,
Suggests: roxygen2, testthat
Collate: 'network.R' 'paleobioDB-package.R' 'pbdb_cache.R' 'pbdb_geographic_functions.R' 'pbdb_querys.R' 'rest_api_tools.R' 'pbdb_rest_api_setup.R' 'pbdb_taxonomic_functions.R' 'pbdb_temporal_functions.R'
Packaged: 2014-05-01 10:21:37 UTC; sara
Author: Sara Varela [aut, cre], Javier González Hernández [aut], Luciano Fabris Sgarbi [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-01 13:20:22

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Package lifecontingencies updated to version 1.1 with previous version 1.0.6 dated 2014-02-25

Title: A package to perform actuarial mathematics for life contingencies insurances
Description: Financial and actuarial functions to evaluate life contingencies.
Author: Giorgio Alfredo Spedicato with contributions from Reinhold Kainhofer and Kevin J. Owens
Maintainer: Giorgio Alfredo Spedicato

Diff between lifecontingencies versions 1.0.6 dated 2014-02-25 and 1.1 dated 2014-05-01

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 lifecontingencies-1.1/lifecontingencies/NEWS                                                                     |    7 -
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New package MultiCNVDetect with initial version 0.1-1
Package: MultiCNVDetect
Type: Package
Title: Multiple Copy Number Variation Detection
Version: 0.1-1
Date: 2012-10-07
Author: Hao Lin, Qiang Kou
Maintainer: Hao Lin
Description: This package provides a tool for analysis of multiple CNV.
License: GPL (>= 2)
Packaged: 2014-05-01 09:29:39 UTC; wubingpei
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-05-01 12:12:45

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Package nplplot updated to version 4.5 with previous version 4.4 dated 2009-09-23

Title: Plotting linkage and association results
Description: This package provides routines for plotting linkage and association results along a chromosome, with marker names displayed along the top border. There are also routines for generating BED and BedGraph custom tracks for viewing in the UCSC genome browser. The data reformatting program Mega2 uses this package to plot output from a variety of programs.
Author: Robert V Baron , Nandita Mukhopadhyay, Xinyu Tang, Daniel E. Weeks
Maintainer: Daniel E. Weeks

Diff between nplplot versions 4.4 dated 2009-09-23 and 4.5 dated 2014-05-01

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Package JMbayes updated to version 0.6-0 with previous version 0.5-3 dated 2014-03-10

Title: Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos

Diff between JMbayes versions 0.5-3 dated 2014-03-10 and 0.6-0 dated 2014-05-01

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Package JM updated to version 1.3-0 with previous version 1.2-0 dated 2013-06-06

Title: Joint Modeling of Longitudinal and Survival Data
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos

Diff between JM versions 1.2-0 dated 2013-06-06 and 1.3-0 dated 2014-05-01

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Package compositions (with last version 1.40-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-14 1.40-0

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Package ibs (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-21 1.1
2014-04-14 1.0

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Package LumiWCluster (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-14 1.0.2

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Package qdapTools updated to version 0.0.3 with previous version 0.0.2 dated 2014-04-24

Title: Tools for the qdap package.
Description: This package is a collection of tools associated with the qdap package that may be useful outside of the context of text analysis.
Author: Bryan Goodrich [ctb], Dason Kurkiewicz [ctb], Kirill Muller [ctb], Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker

Diff between qdapTools versions 0.0.2 dated 2014-04-24 and 0.0.3 dated 2014-05-01

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New package PTE with initial version 1.0
Package: PTE
Type: Package
Title: Personalized Treatment Evaluator
Version: 1.0
Date: 2014-4-30
Author: Adam Kapelner, Justin Bleich
Maintainer: Adam Kapelner
Description: A tool to draw inference in personalized medicine regimes
License: MIT + file LICENSE
Depends: R (>= 3.0), doParallel
Packaged: 2014-05-01 00:32:06 UTC; Kapelner
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-01 07:47:14

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Package prodlim updated to version 1.4.3 with previous version 1.4.2 dated 2014-01-14

Title: Product-limit estimation. Kaplan-Meier and Aalen-Johansson method for censored event history (survival) analysis
Description: Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds

Diff between prodlim versions 1.4.2 dated 2014-01-14 and 1.4.3 dated 2014-05-01

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Package ocean updated to version 0.2-4 with previous version 0.1-0 dated 2013-11-17

Title: Biophysical Oceanography Tools
Description: This package contains a set of functions for manipulating and visualizing output from numerical ocean models. Many of the routines are targeted towards Lagrangian particle-tracking models with the data stored in NetCDF files. This package may be useful to spatial marine ecologists and biological or physical oceanographers.
Author: Benjamin Jones [aut, cre]
Maintainer: Benjamin Jones

Diff between ocean versions 0.1-0 dated 2013-11-17 and 0.2-4 dated 2014-05-01

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 ocean-0.2-4/ocean/MD5                           |   49 +++++++++++++-----------
 ocean-0.2-4/ocean/NAMESPACE                     |   14 ++++--
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 ocean-0.2-4/ocean/R/filter2d.R                  |    9 +++-
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 ocean-0.2-4/ocean/man/filter2d.Rd               |   19 ++++-----
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 ocean-0.2-4/ocean/src/ocean.c                   |   19 +++++----
 45 files changed, 76 insertions(+), 52 deletions(-)

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Package GCD updated to version 3.0.3 with previous version 3.0.2 dated 2014-04-09

Title: Global Charcoal Database
Description: Global Charcoal database data and tools
Author: Global Paleofire Working Group
Maintainer: Olivier Blarquez

Diff between GCD versions 3.0.2 dated 2014-04-09 and 3.0.3 dated 2014-05-01

 DESCRIPTION             |    8 ++--
 MD5                     |   12 +++----
 NEWS                    |   10 +++++-
 R/potveg.R              |   77 +++++++++++++++++++++++++++++++++---------------
 data/paleofiresites.rda |binary
 man/GCD-package.Rd      |    2 -
 man/paleofiresites.Rd   |    3 +
 7 files changed, 75 insertions(+), 37 deletions(-)

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New package bujar with initial version 0.1-3
Package: bujar
Type: Package
Title: Buckley-James Regression for Survival Data with High-Dimensional Covariates
Version: 0.1-3
Date: 2014-4-30
Author: Zhu Wang and others (see COPYRIGHTS)
Maintainer: Zhu Wang
Imports: mda, ncvreg, mboost, gbm, earth, elasticnet, rms
Description: Buckley-James regression for right-censoring survival data with high-dimensional covariates. Including L_2 boosting with componentwise linear least squares, componentwise smoothing splines, P-splines, regression trees and boosted MARS. Other high-dimensional tools include elastic net and MARS.
License: GPL-2
Packaged: 2014-04-30 18:41:17.922 UTC; zhu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-01 08:50:44

More information about bujar at CRAN
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