Title: Basic Robust Statistics
Diff between robustbase versions 0.91-0 dated 2014-04-24 and 0.91-1 dated 2014-05-01
Description: "Essential" Robust Statistics. The goal is to provide
tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by Maronna, Martin and Yohai; Wiley 2006.
Author: Original code by many authors, notably
Peter Rousseeuw and Christophe Croux, see file 'Copyrights';
Valentin Todorov
Maintainer: Martin Maechler
DESCRIPTION | 10 -
MD5 | 30 ++--
NAMESPACE | 3
R/covMcd.R | 279 ++++++++++++++++++++++--------------------
TODO | 4
inst/doc/lmrob_simulation.pdf |binary
inst/doc/psi_functions.pdf |binary
man/covMcd.Rd | 11 +
tests/nlregrob-tst.R | 6
vignettes/psi-GGW.pdf |binary
vignettes/psi-Hampel.pdf |binary
vignettes/psi-Huber.pdf |binary
vignettes/psi-LQQ.pdf |binary
vignettes/psi-Welsh.pdf |binary
vignettes/psi-bisquare.pdf |binary
vignettes/psi-optimal.pdf |binary
16 files changed, 185 insertions(+), 158 deletions(-)
Title: Dynamic models for survival data
Diff between dynsurv versions 0.1-8 dated 2012-05-24 and 0.2-2 dated 2014-05-01
Description: Functions to fit time-varying coefficient models for interval
censored and right censored survival data. Three major
approaches are implemented: 1) Bayesian Cox model with
time-independent, time-varying or dynamic coefficients for
right censored and interval censored data; 2) Spline based
time-varying coefficient Cox model for right censored data;
3) Transformation model with time-varying coefficients for
right censored data using estimating equations.
Author: Xiaojing Wang
Maintainer: Jun Yan
dynsurv-0.1-8/dynsurv/cleanup |only
dynsurv-0.1-8/dynsurv/configure |only
dynsurv-0.1-8/dynsurv/configure.ac |only
dynsurv-0.1-8/dynsurv/src/Makevars.in |only
dynsurv-0.1-8/dynsurv/src/Makevars.win |only
dynsurv-0.2-2/dynsurv/ChangeLog | 27 +++++++++
dynsurv-0.2-2/dynsurv/DESCRIPTION | 36 ++++++------
dynsurv-0.2-2/dynsurv/MD5 | 30 ++++------
dynsurv-0.2-2/dynsurv/NAMESPACE | 33 +++++++++++
dynsurv-0.2-2/dynsurv/R/plot.R | 41 ++++++++------
dynsurv-0.2-2/dynsurv/R/splineCox.R | 10 +--
dynsurv-0.2-2/dynsurv/man/bayesCox.Rd | 26 +++++----
dynsurv-0.2-2/dynsurv/man/splineCox.Rd | 8 +-
dynsurv-0.2-2/dynsurv/man/tvTran.Rd | 8 +-
dynsurv-0.2-2/dynsurv/src/DynamicModel.h | 12 ++--
dynsurv-0.2-2/dynsurv/src/Makevars |only
dynsurv-0.2-2/dynsurv/src/TimeIndepModel.h | 6 +-
dynsurv-0.2-2/dynsurv/src/TimeVaryingModel.h | 12 ++--
dynsurv-0.2-2/dynsurv/src/arms.c | 75 ++++++++++++++++-----------
19 files changed, 209 insertions(+), 115 deletions(-)
Title: Benford Analysis for data validation and forensic analytics
Diff between benford.analysis versions 0.1 dated 2014-01-22 and 0.1.1 dated 2014-05-01
More information about benford.analysis at CRAN
Description: The Benford Analysis package provides tools that make it easier to
validate data using Benford's Law.
Author: Carlos Cinelli
Maintainer: Carlos Cinelli
DESCRIPTION | 13 +-
MD5 | 53 ++++++---
NAMESPACE | 27 +++-
R/functions-new.R | 32 ++++-
R/get.functions.R | 170 ++++++++++++++++++++++++++++--
R/internal.functions-new-code-2.R | 64 +++++++++++
man/MAD.Rd |only
man/benford.Rd | 212 +++++++++++++++++++-------------------
man/benford.analysis.Rd | 124 ++++++++++++----------
man/census.2000_2010.Rd | 33 ++---
man/census.2009.Rd | 33 ++---
man/chisq.Rd |only
man/corporate.payment.Rd | 33 ++---
man/dfactor.Rd |only
man/duplicatesTable.Rd | 46 ++++----
man/extract.digits.Rd |only
man/getBfd.Rd |only
man/getData.Rd |only
man/getDigits.Rd |only
man/getDuplicates.Rd | 54 ++++-----
man/getSuspects.Rd | 66 +++++------
man/lakes.perimeter.Rd | 33 ++---
man/mantissa.Rd |only
man/marc.Rd |only
man/p.these.digits.Rd |only
man/p.this.digit.at.n.Rd |only
man/plot.Benford.Rd | 59 +++++-----
man/print.Benford.Rd | 44 +++----
man/sino.forest.Rd | 33 ++---
man/suspectsTable.Rd | 58 +++++-----
man/taxable.incomes.1978.Rd | 33 ++---
tests |only
32 files changed, 741 insertions(+), 479 deletions(-)
Permanent link
Title: Linear Quantile Mixed Models
Diff between lqmm versions 1.04 dated 2014-01-09 and 1.5 dated 2014-05-01
Description: Fit quantile regression models for independent and hierarchical data
Author: Marco Geraci
Maintainer: Marco Geraci
lqmm-1.04/lqmm/man/AIC.lqm.Rd |only
lqmm-1.04/lqmm/man/AIC.lqmm.Rd |only
lqmm-1.04/lqmm/man/boot.lqm.Rd |only
lqmm-1.04/lqmm/man/boot.lqmm.Rd |only
lqmm-1.04/lqmm/man/cov.lqmm.Rd |only
lqmm-1.04/lqmm/man/extractBoot.lqmm.Rd |only
lqmm-1.04/lqmm/man/raneff.lqmm.Rd |only
lqmm-1.5/lqmm/DESCRIPTION | 10 ++---
lqmm-1.5/lqmm/MD5 | 49 +++++++++++++---------------
lqmm-1.5/lqmm/NAMESPACE | 34 ++++++++++++++++++--
lqmm-1.5/lqmm/R/lqmm.R | 56 +++++++++++----------------------
lqmm-1.5/lqmm/inst/CITATION | 42 ++++++++++++------------
lqmm-1.5/lqmm/inst/ChangeLog | 11 ++++++
lqmm-1.5/lqmm/inst/doc/lqmm.pdf |binary
lqmm-1.5/lqmm/man/VarCorr.Rd |only
lqmm-1.5/lqmm/man/boot.Rd |only
lqmm-1.5/lqmm/man/covHandling.Rd | 2 -
lqmm-1.5/lqmm/man/extractBoot.Rd |only
lqmm-1.5/lqmm/man/logLik.lqm.Rd | 4 +-
lqmm-1.5/lqmm/man/logLik.lqmm.Rd | 4 +-
lqmm-1.5/lqmm/man/lqm.Rd | 2 -
lqmm-1.5/lqmm/man/lqm.fit.gs.Rd | 3 +
lqmm-1.5/lqmm/man/lqmm-package.Rd | 8 ++--
lqmm-1.5/lqmm/man/lqmm.Rd | 15 ++++----
lqmm-1.5/lqmm/man/lqmm.fit.df.Rd | 2 -
lqmm-1.5/lqmm/man/lqmm.fit.gs.Rd | 8 ++--
lqmm-1.5/lqmm/man/predict.lqmm.Rd | 4 +-
lqmm-1.5/lqmm/man/ranef.Rd |only
lqmm-1.5/lqmm/man/residuals.lqmm.Rd | 4 +-
lqmm-1.5/lqmm/man/summary.boot.lqmm.Rd | 2 -
lqmm-1.5/lqmm/src/lqmm.c | 4 +-
31 files changed, 145 insertions(+), 119 deletions(-)
More information about rClinicalCodes at CRAN
Permanent link
Title: A package to perform actuarial mathematics for life
contingencies insurances
Diff between lifecontingencies versions 1.0.6 dated 2014-02-25 and 1.1 dated 2014-05-01
More information about lifecontingencies at CRAN
Description: Financial and actuarial functions to evaluate life contingencies.
Author: Giorgio Alfredo Spedicato with contributions from Reinhold Kainhofer and Kevin J. Owens
Maintainer: Giorgio Alfredo Spedicato
lifecontingencies-1.0.6/lifecontingencies/R/s4classes.R |only
lifecontingencies-1.0.6/lifecontingencies/R/s4methods.R |only
lifecontingencies-1.1/lifecontingencies/ChangeLog | 3
lifecontingencies-1.1/lifecontingencies/DESCRIPTION | 8 -
lifecontingencies-1.1/lifecontingencies/MD5 | 42 +++---
lifecontingencies-1.1/lifecontingencies/NEWS | 7 -
lifecontingencies-1.1/lifecontingencies/R/commonMethods.R |only
lifecontingencies-1.1/lifecontingencies/R/demographicFunctions.R | 63 +++++----
lifecontingencies-1.1/lifecontingencies/R/lifetableAndActuarialtableClassesAndMethods.R |only
lifecontingencies-1.1/lifecontingencies/R/mdtClassesAndMethods.R | 64 +++++++---
lifecontingencies-1.1/lifecontingencies/R/mdtFunctions.R |only
lifecontingencies-1.1/lifecontingencies/R/randomGenerationFunctions.R | 21 ++-
lifecontingencies-1.1/lifecontingencies/R/tomarkovchain.R | 37 +++++
lifecontingencies-1.1/lifecontingencies/R/zzz.R | 2
lifecontingencies-1.1/lifecontingencies/build/vignette.rds |binary
lifecontingencies-1.1/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.pdf |binary
lifecontingencies-1.1/lifecontingencies/inst/doc/multiple_decrements_with_lifecontingencies_package.R |only
lifecontingencies-1.1/lifecontingencies/inst/doc/multiple_decrements_with_lifecontingencies_package.Rnw |only
lifecontingencies-1.1/lifecontingencies/inst/doc/multiple_decrements_with_lifecontingencies_package.pdf |only
lifecontingencies-1.1/lifecontingencies/man/demoIta.Rd | 6
lifecontingencies-1.1/lifecontingencies/man/getOmega-methods.Rd | 9 -
lifecontingencies-1.1/lifecontingencies/man/lifecontingencies-package.Rd | 4
lifecontingencies-1.1/lifecontingencies/man/mdt-class.Rd | 10 +
lifecontingencies-1.1/lifecontingencies/man/pxt.Rd | 11 +
lifecontingencies-1.1/lifecontingencies/vignettes/an_introduction_to_lifecontingencies_package-figBalanceDue.pdf |only
lifecontingencies-1.1/lifecontingencies/vignettes/lifecontingenciesBiblio.bib | 21 +++
lifecontingencies-1.1/lifecontingencies/vignettes/multiple_decrements_with_lifecontingencies_package.Rnw |only
27 files changed, 223 insertions(+), 85 deletions(-)
Permanent link
More information about MultiCNVDetect at CRAN
Permanent link
Title: Plotting linkage and association results
Diff between nplplot versions 4.4 dated 2009-09-23 and 4.5 dated 2014-05-01
Description: This package provides routines for plotting
linkage and association results along a chromosome,
with marker names displayed along the top border.
There are also routines for generating BED and BedGraph
custom tracks for viewing in the UCSC genome browser.
The data reformatting program Mega2 uses this
package to plot output from a variety of
programs.
Author: Robert V Baron
Maintainer: Daniel E. Weeks
nplplot-4.4/nplplot/data/lods1.txt |only
nplplot-4.4/nplplot/data/lods1header.R |only
nplplot-4.4/nplplot/data/lods2.txt |only
nplplot-4.4/nplplot/data/lods2header.R |only
nplplot-4.5/nplplot/DESCRIPTION | 35 +--
nplplot-4.5/nplplot/MD5 |only
nplplot-4.5/nplplot/NAMESPACE |only
nplplot-4.5/nplplot/R/bedplot.R | 10 -
nplplot-4.5/nplplot/R/genomeplot.R | 10 -
nplplot-4.5/nplplot/R/nplplot.R | 296 -------------------------------
nplplot-4.5/nplplot/R/nplplot.multi.R | 75 +++++--
nplplot-4.5/nplplot/R/nplplot.old.R | 17 -
nplplot-4.5/nplplot/R/prepareplot.R | 158 +++++++++-------
nplplot-4.5/nplplot/data/lods1.txt.gz |only
nplplot-4.5/nplplot/data/lods1header.rda |only
nplplot-4.5/nplplot/data/lods2.txt.gz |only
nplplot-4.5/nplplot/data/lods2header.rda |only
nplplot-4.5/nplplot/inst |only
nplplot-4.5/nplplot/man/bedplot.Rd | 8
nplplot-4.5/nplplot/man/lods1.Rd | 10 -
nplplot-4.5/nplplot/man/lods2.Rd | 12 -
nplplot-4.5/nplplot/man/nplplot.Rd | 22 +-
nplplot-4.5/nplplot/man/nplplot.multi.Rd | 40 ++--
nplplot-4.5/nplplot/man/nplplot.old.Rd | 2
nplplot-4.5/nplplot/man/prepareplot.Rd | 16 +
25 files changed, 246 insertions(+), 465 deletions(-)
Title: Joint Modeling of Longitudinal and Time-to-Event Data under a
Bayesian Approach
Diff between JMbayes versions 0.5-3 dated 2014-03-10 and 0.6-0 dated 2014-05-01
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos
DESCRIPTION | 8 +-
MD5 | 37 ++++++-------
R/bma.combine.R | 4 -
R/draw.stick.R |only
R/marglogLik.R | 4 -
R/plot.JMbayes.R | 2
R/predict.JMbayes.R | 13 +++-
R/survfitJM.JMbayes.R | 6 +-
data/aids.id.rda |binary
data/aids.rda |binary
data/pbc2.id.rda |binary
data/pbc2.rda |binary
data/prothro.rda |binary
data/prothros.rda |binary
demo/server.R | 142 +++++++++++++++++++++++++++++++++++++++-----------
demo/ui.R | 11 ++-
inst/NEWS | 8 ++
man/JMbayes.Rd | 4 -
man/bma.combine.Rd | 3 -
man/predict.Rd | 9 ++-
20 files changed, 181 insertions(+), 70 deletions(-)
Title: Joint Modeling of Longitudinal and Survival Data
Diff between JM versions 1.2-0 dated 2013-06-06 and 1.3-0 dated 2014-05-01
Description: Shared parameter models for the joint modeling of longitudinal and time-to-event data.
Author: Dimitris Rizopoulos
Maintainer: Dimitris Rizopoulos
DESCRIPTION | 13 ++++++-------
MD5 | 31 ++++++++++++++++---------------
NAMESPACE | 5 +++++
R/aucJM.jointModel.R | 14 ++++++++++++--
R/confint.jointModel.R | 2 +-
R/format.perc2.R |only
R/print.aucJM.R | 2 +-
R/xtable.jointModel.R | 2 +-
data/aids.id.rda |binary
data/aids.rda |binary
data/pbc2.id.rda |binary
data/pbc2.rda |binary
data/prothro.rda |binary
data/prothros.rda |binary
inst/NEWS | 8 ++++++++
man/JM.Rd | 4 ++--
man/aucJM.Rd | 2 +-
17 files changed, 53 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-14 1.40-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-21 1.1
2014-04-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-14 1.0.2
Title: Tools for the qdap package.
Diff between qdapTools versions 0.0.2 dated 2014-04-24 and 0.0.3 dated 2014-05-01
Description: This package is a collection of tools associated with the qdap
package that may be useful outside of the context of text analysis.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Kirill Muller [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 10 +++++-----
MD5 | 32 ++++++++++++++++++--------------
NAMESPACE | 2 ++
NEWS | 25 ++++++++++++++++++-------
R/hash.R | 2 +-
R/hms2sec.R | 2 +-
R/id.R |only
R/pad.R |only
R/repo2github.R | 4 ++--
R/sec2hms.R | 2 +-
R/text2color.R | 4 ++--
inst/CITATION | 4 ++--
man/hash.Rd | 3 ++-
man/hms2sec.Rd | 3 ++-
man/id.Rd |only
man/pad.Rd |only
man/repo2github.Rd | 14 +++++++-------
man/sec2hms.Rd | 3 ++-
man/text2color.Rd | 4 ++--
19 files changed, 67 insertions(+), 47 deletions(-)
Title: Product-limit estimation. Kaplan-Meier and Aalen-Johansson
method for censored event history (survival) analysis
Diff between prodlim versions 1.4.2 dated 2014-01-14 and 1.4.3 dated 2014-05-01
Description: Fast and user friendly implementation of nonparametric estimators
for censored event history (survival) analysis.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds
DESCRIPTION | 6 +++---
MD5 | 32 ++++++++++++++++----------------
NAMESPACE | 45 ++++++++++++++++++++++-----------------------
R/Hist.R | 6 ++++--
R/SimSurv.R | 1 +
R/leaveOneOut.R | 2 --
R/lifeTab.survival.R | 12 +++++++++---
R/model.specials.R | 26 ++++++++++++--------------
R/plot.Hist.R | 4 ++--
R/plot.prodlim.R | 38 ++++++++++++++++++++++++++------------
R/prodlim.R | 14 ++++++++------
R/sindex.R | 2 +-
R/survModel.R | 8 ++++----
man/plot.prodlim.Rd | 14 ++++++++++++++
man/predict.prodlim.Rd | 2 +-
src/icens_prodlim.c | 2 +-
src/life_table.c | 4 ++--
17 files changed, 126 insertions(+), 92 deletions(-)
Title: Biophysical Oceanography Tools
Diff between ocean versions 0.1-0 dated 2013-11-17 and 0.2-4 dated 2014-05-01
Description: This package contains a set of functions for manipulating and
visualizing output from numerical ocean models. Many of the routines are
targeted towards Lagrangian particle-tracking models with the data stored
in NetCDF files. This package may be useful to spatial marine ecologists
and biological or physical oceanographers.
Author: Benjamin Jones [aut, cre]
Maintainer: Benjamin Jones
ocean-0.1-0/ocean/R/att_plot.R |only
ocean-0.1-0/ocean/R/bathy_colors.R |only
ocean-0.1-0/ocean/R/calculate_element_size.R |only
ocean-0.1-0/ocean/R/find_element.R |only
ocean-0.1-0/ocean/R/is_in_grid.R |only
ocean-0.1-0/ocean/R/jet_colors.R |only
ocean-0.1-0/ocean/R/lagrangian_pdd.R |only
ocean-0.1-0/ocean/R/spaghetti.R |only
ocean-0.1-0/ocean/man/att_plot.Rd |only
ocean-0.1-0/ocean/man/bathy_colors.Rd |only
ocean-0.1-0/ocean/man/calculate_element_size.Rd |only
ocean-0.1-0/ocean/man/find_elem.Rd |only
ocean-0.1-0/ocean/man/is_in_grid.Rd |only
ocean-0.1-0/ocean/man/jet_colors.Rd |only
ocean-0.1-0/ocean/man/lagrangian_pdd.Rd |only
ocean-0.1-0/ocean/man/spaghetti.Rd |only
ocean-0.2-4/ocean/DESCRIPTION | 18 ++++----
ocean-0.2-4/ocean/MD5 | 49 +++++++++++++-----------
ocean-0.2-4/ocean/NAMESPACE | 14 ++++--
ocean-0.2-4/ocean/NEWS |only
ocean-0.2-4/ocean/R/color_ramps.R |only
ocean-0.2-4/ocean/R/filter2d.R | 9 +++-
ocean-0.2-4/ocean/R/fvcom_grid.R |only
ocean-0.2-4/ocean/data |only
ocean-0.2-4/ocean/man/bathy.colors.Rd |only
ocean-0.2-4/ocean/man/filter2d.Rd | 19 ++++-----
ocean-0.2-4/ocean/man/find.elem-methods.Rd |only
ocean-0.2-4/ocean/man/fvcom.grid-class.Rd |only
ocean-0.2-4/ocean/man/fvcom.grid.Rd |only
ocean-0.2-4/ocean/man/get.depth-methods.Rd |only
ocean-0.2-4/ocean/man/get.elems-methods.Rd |only
ocean-0.2-4/ocean/man/get.nelems-methods.Rd |only
ocean-0.2-4/ocean/man/get.nnodes-methods.Rd |only
ocean-0.2-4/ocean/man/get.nodes-methods.Rd |only
ocean-0.2-4/ocean/man/get.proj-methods.Rd |only
ocean-0.2-4/ocean/man/image-methods.Rd |only
ocean-0.2-4/ocean/man/interp-methods.Rd |only
ocean-0.2-4/ocean/man/is.in.grid-methods.Rd |only
ocean-0.2-4/ocean/man/jet.colors.Rd |only
ocean-0.2-4/ocean/man/lines-methods.Rd |only
ocean-0.2-4/ocean/man/loadFVCOMGrid27.Rd |only
ocean-0.2-4/ocean/man/ocean.demo.grid.Rd |only
ocean-0.2-4/ocean/man/pdd-methods.Rd |only
ocean-0.2-4/ocean/man/validFVCOMGrid.Rd |only
ocean-0.2-4/ocean/src/ocean.c | 19 +++++----
45 files changed, 76 insertions(+), 52 deletions(-)
Title: Global Charcoal Database
Diff between GCD versions 3.0.2 dated 2014-04-09 and 3.0.3 dated 2014-05-01
Description: Global Charcoal database data and tools
Author: Global Paleofire Working Group
Maintainer: Olivier Blarquez
DESCRIPTION | 8 ++--
MD5 | 12 +++----
NEWS | 10 +++++-
R/potveg.R | 77 +++++++++++++++++++++++++++++++++---------------
data/paleofiresites.rda |binary
man/GCD-package.Rd | 2 -
man/paleofiresites.Rd | 3 +
7 files changed, 75 insertions(+), 37 deletions(-)