Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-30 3.0.14
2011-06-07 3.0.13
2011-03-30 3.0.12
2009-12-06 3.0.11
2009-02-09 3.0.10
2007-10-09 3.0.9
2007-09-30 3.0.8
2007-03-26 3.0.7
Title: Provides R-language Code to Examine Quantitative Risk Management
Concepts
Diff between QRM versions 0.4-9 dated 2013-10-31 and 0.4-10 dated 2014-05-16
Description: This package is designed to accompany the book
Quantitative Risk Management: Concepts, Techniques and Tools by
Alexander J. McNeil, Rudiger Frey, and Paul Embrechts.
Author: Bernhard Pfaff [aut, cre],
Marius Hofert [ctb],
Alexander McNeil [aut] (S-Plus original (QRMlib)),
Scott Ulmann [trl] (First R port as package QRMlib)
Maintainer: Bernhard Pfaff
QRM-0.4-10/QRM/DESCRIPTION | 30 +--
QRM-0.4-10/QRM/MD5 | 88 +++++----
QRM-0.4-10/QRM/NAMESPACE | 5
QRM-0.4-10/QRM/R/CopulaAC.R | 10 -
QRM-0.4-10/QRM/R/POT.R | 10 -
QRM-0.4-10/QRM/R/PointProcess.R | 26 --
QRM-0.4-10/QRM/R/RcppExports.R |only
QRM-0.4-10/QRM/R/VaRbound.R |only
QRM-0.4-10/QRM/R/game.R | 293 ++++++++++++++++++--------------
QRM-0.4-10/QRM/data/DJ.RData |binary
QRM-0.4-10/QRM/data/DJ.df.RData |binary
QRM-0.4-10/QRM/data/FXGBP.RData |binary
QRM-0.4-10/QRM/data/FXGBP.df.RData |binary
QRM-0.4-10/QRM/data/cac40.RData |binary
QRM-0.4-10/QRM/data/cac40.df.RData |binary
QRM-0.4-10/QRM/data/danish.RData |binary
QRM-0.4-10/QRM/data/danish.df.RData |binary
QRM-0.4-10/QRM/data/dji.RData |binary
QRM-0.4-10/QRM/data/dji.df.RData |binary
QRM-0.4-10/QRM/data/ftse100.RData |binary
QRM-0.4-10/QRM/data/ftse100.df.RData |binary
QRM-0.4-10/QRM/data/hsi.RData |binary
QRM-0.4-10/QRM/data/hsi.df.RData |binary
QRM-0.4-10/QRM/data/nasdaq.RData |binary
QRM-0.4-10/QRM/data/nasdaq.df.RData |binary
QRM-0.4-10/QRM/data/nikkei.RData |binary
QRM-0.4-10/QRM/data/nikkei.df.RData |binary
QRM-0.4-10/QRM/data/smi.RData |binary
QRM-0.4-10/QRM/data/smi.df.RData |binary
QRM-0.4-10/QRM/data/sp500.RData |binary
QRM-0.4-10/QRM/data/sp500.df.RData |binary
QRM-0.4-10/QRM/data/spdata.RData |binary
QRM-0.4-10/QRM/data/spdata.df.RData |binary
QRM-0.4-10/QRM/data/spdata.raw.RData |binary
QRM-0.4-10/QRM/data/spdata.raw.df.RData |binary
QRM-0.4-10/QRM/data/xdax.RData |binary
QRM-0.4-10/QRM/data/xdax.df.RData |binary
QRM-0.4-10/QRM/demo/game.R | 16 -
QRM-0.4-10/QRM/man/CopulaAC.Rd | 1
QRM-0.4-10/QRM/man/GIG.Rd | 1
QRM-0.4-10/QRM/man/POT.Rd | 8
QRM-0.4-10/QRM/man/PointProcess.Rd | 2
QRM-0.4-10/QRM/man/VaRbound.Rd |only
QRM-0.4-10/QRM/man/game-aux.Rd | 19 +-
QRM-0.4-10/QRM/man/game.Rd | 96 +++++-----
QRM-0.4-10/QRM/src/QRM.cpp |only
QRM-0.4-10/QRM/src/RcppExports.cpp |only
QRM-0.4-9/QRM/src/QRM.c |only
48 files changed, 336 insertions(+), 269 deletions(-)
Title: Q-Q and manhattan plots for GWAS data
Diff between qqman versions 0.1.0 dated 2014-05-10 and 0.1.1 dated 2014-05-16
Description: Q-Q and manhattan plots for GWAS data
Author: Stephen Turner
Maintainer: Stephen Turner
DESCRIPTION | 6 +--
MD5 | 9 +++--
README.md |only
inst/doc/qqman.Rmd | 2 -
inst/doc/qqman.html | 83 ++++++++++++++++++++++++++--------------------------
vignettes/qqman.Rmd | 2 -
6 files changed, 52 insertions(+), 50 deletions(-)
Title: Tools for the qdap package.
Diff between qdapTools versions 0.1.0 dated 2014-05-08 and 0.2.0 dated 2014-05-16
Description: This package is a collection of tools associated with the qdap
package that may be useful outside of the context of text analysis.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Kirill Muller [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
qdapTools-0.1.0/qdapTools/R/sec2hms.R |only
qdapTools-0.1.0/qdapTools/man/hms2sec.Rd |only
qdapTools-0.1.0/qdapTools/man/sec2hms.Rd |only
qdapTools-0.2.0/qdapTools/DESCRIPTION | 6
qdapTools-0.2.0/qdapTools/MD5 | 34 ++---
qdapTools-0.2.0/qdapTools/NAMESPACE | 9 +
qdapTools-0.2.0/qdapTools/NEWS | 31 ++++-
qdapTools-0.2.0/qdapTools/R/hash.R | 22 ++-
qdapTools-0.2.0/qdapTools/R/hms2sec.R | 45 ++++++-
qdapTools-0.2.0/qdapTools/R/id.R | 2
qdapTools-0.2.0/qdapTools/R/list2df.R | 31 +++--
qdapTools-0.2.0/qdapTools/R/lookup.R | 175 ++++++++++++++++++++++-------
qdapTools-0.2.0/qdapTools/R/mtabulate.R |only
qdapTools-0.2.0/qdapTools/R/v_outer.R | 72 ++++++++++-
qdapTools-0.2.0/qdapTools/inst/CITATION | 4
qdapTools-0.2.0/qdapTools/man/id.Rd | 2
qdapTools-0.2.0/qdapTools/man/list2df.Rd | 10 +
qdapTools-0.2.0/qdapTools/man/lookup.Rd | 22 +++
qdapTools-0.2.0/qdapTools/man/mtabulate.Rd |only
qdapTools-0.2.0/qdapTools/man/timeconv.Rd |only
qdapTools-0.2.0/qdapTools/man/v_outer.Rd | 9 +
21 files changed, 377 insertions(+), 97 deletions(-)
Title: Adding Progress Bar to '*apply' Functions
Diff between pbapply versions 1.1-0 dated 2013-10-03 and 1.1-1 dated 2014-05-16
Description: A lightweight package that adds
progress bar to vectorized R functions
('*apply'). The implementation can easily be added
to functions, where showing the progress is
useful for the user (e.g. bootstrap).
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/pblapply.R | 2 +-
inst/ChangeLog | 4 ++++
4 files changed, 12 insertions(+), 8 deletions(-)
Title: Multivariate Data Handling with S4 Classes and Sparse Matrices
Diff between mefa4 versions 0.3-0 dated 2013-10-08 and 0.3-1 dated 2014-05-16
Description: An S4 update of the 'mefa' package
using sparse matrices for enhanced efficiency.
Sparse array-like objects are supported via
lists of sparse matrices.
Author: Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 8 ++++----
MD5 | 16 +++++++++-------
NAMESPACE | 3 ++-
R/mefa4methods.R | 2 +-
R/mefa4utilities.R | 39 +++++++++++++++++++++++++++++++++++++++
build/vignette.rds |binary
inst/ChangeLog | 7 +++++++
inst/doc/mefa4.pdf |binary
man/nameAlnum.Rd |only
tests/mefa4comparisons.R |only
10 files changed, 62 insertions(+), 13 deletions(-)
Title: Analyzing Wildlife Data with Detection Error
Diff between detect versions 0.3-1 dated 2013-10-25 and 0.3-2 dated 2014-05-16
Description: The package implements models to analyze
site occupancy and count data models with detection error.
The package development was supported by the
Alberta Biodiversity Monitoring Institute (ABMI)
and the Boreal Avian Modelling (BAM) Project.
Author: Peter Solymos, Monica Moreno, Subhash R Lele
Maintainer: Peter Solymos
DESCRIPTION | 10 +++++-----
MD5 | 24 ++++++++++++------------
R/cmulti2.fit.R | 1 +
R/hbootindex.R | 2 +-
inst/ChangeLog | 6 ++++++
man/cmulti.Rd | 2 +-
man/convertEDR.Rd | 4 ++--
man/databu.Rd | 9 +++++++--
man/datocc.Rd | 5 ++++-
man/detect-package.Rd | 8 ++++----
man/load_BAM_QPAD.Rd | 2 +-
man/svabu.Rd | 2 +-
man/svocc.Rd | 2 +-
13 files changed, 46 insertions(+), 31 deletions(-)
Title: Tools for simulating and plotting quantities of interest
estimated from Cox Proportional Hazards models
Diff between simPH versions 1.2 dated 2014-04-20 and 1.2.1 dated 2014-05-16
Description: The package simulates and plots quantities of interest (relative
hazards, first differences, and hazard ratios) for linear coefficients,
multiplicative interactions, polynomials, penalised splines, and
non-proportional hazards, as well as stratified survival curves from Cox
Proportional Hazard models. It also simulates and plots marginal effects
for multiplicative interactions.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
simPH-1.2.1/simPH/DESCRIPTION | 8 -
simPH-1.2.1/simPH/MD5 | 14 +-
simPH-1.2.1/simPH/NEWS | 4
simPH-1.2.1/simPH/R/simPH.R | 9 +
simPH-1.2.1/simPH/README.md | 118 +++++++++++++++++--------
simPH-1.2.1/simPH/data/CarpenterFdaData.tab.gz |only
simPH-1.2.1/simPH/data/GolubEUPData.tab.gz |only
simPH-1.2.1/simPH/man/simPH.Rd | 9 +
simPH-1.2/simPH/data/CarpenterFdaData.tab |only
simPH-1.2/simPH/data/GolubEUPData.tab |only
10 files changed, 109 insertions(+), 53 deletions(-)
Title: Tools for spatial data
Diff between fields versions 6.9.1 dated 2013-12-20 and 7.1 dated 2014-05-16
Description: Fields is for curve, surface and function
fitting with an emphasis on splines, spatial data and spatial
statistics. The major methods include cubic, and thin plate splines,
Kriging and compact covariances for large data sets. The splines and
Kriging methods are supporting by functions that can determine the
smoothing parameter (nugget and sill variance) by cross validation
and also by restricted maximum likelihood. A major feature is that
any covariance function implemented in R and following a simple fields
format can be used for spatial prediction. Some tailored optimization
functions are supplied for finding the MLEs for the Matern family of
covariances. There are also many useful functions for plotting and
working with spatial data as images. This package also contains an
implementation of sparse matrix methods for large spatial data sets and
currently requires the sparse matrix (spam) package.
But spam is not required for the standard
spatial functions. Use help(fields) to get started and for an
overview. The fields source code is heavily commented and
provides useful explanations of numerical details in addition to the
manual pages.
Author: Douglas Nychka [aut, cre], Reinhard Furrer [aut], Stephan Sain [aut]
Maintainer: Douglas Nychka
fields-6.9.1/fields/R/fastTps.R |only
fields-6.9.1/fields/R/predictSE.Krig.R |only
fields-6.9.1/fields/R/predictSE.mKrig.R |only
fields-6.9.1/fields/R/predictSurface.R |only
fields-6.9.1/fields/R/sim.mKrig.R |only
fields-7.1/fields/DESCRIPTION | 12
fields-7.1/fields/MD5 | 117 ++++----
fields-7.1/fields/R/Krig.R |only
fields-7.1/fields/R/Krig.family.R | 7
fields-7.1/fields/R/Tps.R | 10
fields-7.1/fields/R/as.image.R | 110 ++-----
fields-7.1/fields/R/discretize.image.R | 27 +
fields-7.1/fields/R/fastTps.family.R | 221 ++++++++++------
fields-7.1/fields/R/fields.x.to.grid.R | 6
fields-7.1/fields/R/mKrig.family.R | 5
fields-7.1/fields/R/predict.Krig.R | 6
fields-7.1/fields/R/predictSurface.family.R |only
fields-7.1/fields/R/predictSurfaceSE.R | 80 -----
fields-7.1/fields/R/predictSurfaceSE.family.R |only
fields-7.1/fields/R/quilt.plot.R | 10
fields-7.1/fields/R/setup.image.smooth.R | 2
fields-7.1/fields/R/sim.Krig.approx.R | 8
fields-7.1/fields/R/sim.mKrig.approx.R |only
fields-7.1/fields/R/smooth.2d.R | 2
fields-7.1/fields/R/surface.family.R | 4
fields-7.1/fields/man/Krig.Rd | 203 +++++++-------
fields-7.1/fields/man/Tps.Rd | 2
fields-7.1/fields/man/as.image.Rd | 18 -
fields-7.1/fields/man/fields-internal.Rd | 21 +
fields-7.1/fields/man/grid.list.Rd | 16 -
fields-7.1/fields/man/image.smooth.Rd | 2
fields-7.1/fields/man/mKrig.Rd | 12
fields-7.1/fields/man/predict.Krig.Rd | 98 ++++---
fields-7.1/fields/man/predictSurface.Rd | 97 +++----
fields-7.1/fields/man/quilt.plot.Rd | 11
fields-7.1/fields/man/sim.Krig.Rd | 183 ++++++++-----
fields-7.1/fields/man/sreg.Rd | 11
fields-7.1/fields/man/surface.Krig.Rd | 18 -
fields-7.1/fields/tests/Krig.Z.test.Rout.save | 8
fields-7.1/fields/tests/Krig.se.W.Rout.save | 8
fields-7.1/fields/tests/Krig.se.grid.test.R | 2
fields-7.1/fields/tests/Krig.se.grid.test.Rout.save | 14 -
fields-7.1/fields/tests/Krig.se.test.R | 4
fields-7.1/fields/tests/Krig.se.test.Rout.save | 14 -
fields-7.1/fields/tests/Krig.test.Rout.save | 8
fields-7.1/fields/tests/Krig.test.W.Rout.save | 8
fields-7.1/fields/tests/Likelihood.test.Rout.save | 8
fields-7.1/fields/tests/REMLest.test.Rout.save | 8
fields-7.1/fields/tests/Tps.test.Rout.save | 8
fields-7.1/fields/tests/Wend.test.Rout.save | 8
fields-7.1/fields/tests/cov.test.Rout.save | 8
fields-7.1/fields/tests/derivative.test.Rout.save | 8
fields-7.1/fields/tests/diag.multiply.test.Rout.save | 8
fields-7.1/fields/tests/diagonal2.test.Rout.save | 8
fields-7.1/fields/tests/evlpoly.test.Rout.save | 8
fields-7.1/fields/tests/fastTpsPredict.test.R | 11
fields-7.1/fields/tests/mKrig.Z.Rout.save | 8
fields-7.1/fields/tests/mKrig.parameters.test.Rout.save | 8
fields-7.1/fields/tests/mKrig.se.test.Rout.save | 8
fields-7.1/fields/tests/mKrig.test.Rout.save | 8
fields-7.1/fields/tests/misc.test.Rout.save | 8
fields-7.1/fields/tests/spam.test.Rout.save | 8
fields-7.1/fields/tests/sreg.test.Rout.save | 8
fields-7.1/fields/tests/vgram.test.Rout.save | 8
64 files changed, 800 insertions(+), 732 deletions(-)
Title: Approximate string matching and string distance functions.
Diff between stringdist versions 0.7.2 dated 2014-03-02 and 0.7.3 dated 2014-05-16
Description: Implements an approximate string matching version of R's native
'match' function. Can calculate various string distances based on edits
(damerau-levenshtein, hamming, levenshtein, optimal sting alignment),
qgrams (q-gram, cosine, jaccard distance) or heuristic metrics (jaro,
jaro-winkler).
Author: Mark van der Loo
Maintainer: Mark van der Loo
DESCRIPTION | 6
MD5 | 23 +-
NEWS | 6
R/amatch.R | 7
R/stringdist.R | 37 +++
inst/CITATION |only
inst/tests/testStringdist.R | 74 ++++---
man/amatch.Rd | 101 ++++------
man/qgrams.Rd | 54 ++---
man/stringdist-package.Rd | 1
man/stringdist.Rd | 408 +++++++++++++++++++-------------------------
src/dl.c | 12 -
src/jaro.c | 22 +-
13 files changed, 356 insertions(+), 395 deletions(-)
Title: Isotope pattern, profile and centroid calculation for mass
spectrometry.
Diff between enviPat versions 1.5 dated 2014-04-02 and 1.6 dated 2014-05-16
Description: Fast and very memory-efficient calculation of isotope patterns,
subsequent convolution to theoretical envelopes (profiles) plus valley
detection and centroidization or intensoid calculation. Batch processing,
resolution interpolation, wrapper, adduct calculations and molecular
formula parsing.
Author: Martin Loos, Christian Gerber
Maintainer: Martin Loos
DESCRIPTION | 8 +++----
MD5 | 12 +++++-----
NEWS | 4 +++
R/envelope.R | 61 +++++++++++++++++++++++++++----------------------------
R/enviPat.R | 2 -
R/vdetect.R | 44 +++++++++++++++++++--------------------
data/adducts.rda |binary
7 files changed, 68 insertions(+), 63 deletions(-)
Title: Adapt numerical records to fit (in)equality restrictions with
the Successive Projection Algorithm
Diff between rspa versions 0.1-4 dated 2013-10-21 and 0.1-5 dated 2014-05-16
Description: Based on (optionally sparse) quadratic optimization with the main
algorithms implemented in C. Includes features for easy processing of many
(smaller) records. The algorithm has been tested on fairly large
optimization problems with up to a few million variables and several
hundred thousand restrictions.
Author: Mark van der Loo
Maintainer: Mark van der Loo
DESCRIPTION | 12 +---
MD5 | 29 +++++-----
NAMESPACE | 9 ++-
R/rspa.R | 2
man/adjust.Rd | 128 ++++++++++++++++++++++-------------------------
man/adjustRecords.Rd | 36 ++++++-------
man/adjusted.Rd | 44 +++++++---------
man/adjustedRecords.Rd | 53 +++++++++----------
man/rspa-package.Rd | 25 ++++-----
man/sparseConstraints.Rd | 70 ++++++++++++-------------
src/R_dc_spa.c | 2
src/R_spa.c | 2
src/maxdist.c | 10 ---
src/maxdist.h | 2
src/sparseConstraints.c | 3 -
vignettes/figure |only
16 files changed, 202 insertions(+), 225 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-11 1.0.2
2013-11-27 1.0.0
2013-11-01 0.12.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-15 0.14.2
2013-06-22 0.14
2013-04-11 0.11
2013-04-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-27 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-14 0.7-2
2012-07-26 0.7-1
2012-07-23 0.7-0
2011-02-01 0.6-0
2010-08-07 0.5.0
2009-07-21 0.4.0
2008-10-12 0.3.2
2007-10-24 0.3.1
2007-07-31 0.3.0
2007-01-18 0.2.2
Title: Character string processing facilities
Diff between stringi versions 0.2-4 dated 2014-05-15 and 0.2-5 dated 2014-05-16
Description: stringi allows for fast, correct, consistent,
and convenient character string/text processing in each locale
and any native encoding. Thanks to the use of the ICU library,
the package provides R users with platform-independent functions
known to Java, Perl, Python, PHP and Ruby programmers.
Author: Marek Gagolewski and Bartek Tartanus (stringi source code);
IBM and other contributors (ICU4C 52.1 source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski
DESCRIPTION | 8 -
MD5 | 220 +++++++++++++++++++++---------------------
NEWS | 5
R/ICU_settings.R | 2
R/compare.R | 48 +++++++--
R/encoding_detection.R | 8 +
R/install.R | 9 +
R/join.R | 27 +++++
R/length.R | 20 +++
R/locale_management.R | 4
R/opts.R | 12 ++
R/pad.R | 6 +
R/random.R | 12 ++
R/reverse.R | 6 +
R/search_count_class.R | 5
R/search_count_fixed.R | 12 ++
R/search_count_other.R | 4
R/search_count_regex.R | 10 +
R/search_detect_class.R | 1
R/search_detect_fixed.R | 4
R/search_detect_regex.R | 9 +
R/search_extract_class.R | 8 +
R/search_extract_coll.R | 6 +
R/search_extract_other.R | 20 +++
R/search_extract_regex.R | 6 +
R/search_locate_class.R | 10 +
R/search_locate_coll.R | 16 ++-
R/search_locate_fixed.R | 15 ++
R/search_locate_other.R | 19 +++
R/search_locate_regex.R | 6 +
R/search_match_regex.R | 1
R/search_replace_class.R | 4
R/search_replace_coll.R | 4
R/search_replace_fixed.R | 4
R/search_replace_other.R | 5
R/search_replace_regex.R | 10 +
R/search_split_class.R | 4
R/search_split_fixed.R | 1
R/search_split_other.R | 1
R/search_split_regex.R | 1
R/stats.R | 5
R/sub.R | 16 +++
R/trans_casemap.R | 12 ++
R/trans_normalization.R | 4
R/trans_transliterate.R | 11 ++
R/trim.R | 8 +
R/wrap.R | 6 +
man/oper_comparison.Rd | 3
man/oper_plus.Rd | 3
man/stri_compare.Rd | 31 +++++
man/stri_count.Rd | 4
man/stri_count_charclass.Rd | 5
man/stri_count_fixed.Rd | 12 ++
man/stri_count_regex.Rd | 10 +
man/stri_detect_charclass.Rd | 1
man/stri_detect_fixed.Rd | 3
man/stri_detect_regex.Rd | 9 +
man/stri_dup.Rd | 5
man/stri_enc_isascii.Rd | 3
man/stri_enc_isutf8.Rd | 5
man/stri_extract_all.Rd | 5
man/stri_extract_charclass.Rd | 7 +
man/stri_extract_coll.Rd | 5
man/stri_extract_first.Rd | 6 +
man/stri_extract_last.Rd | 6 +
man/stri_extract_regex.Rd | 5
man/stri_extract_words.Rd | 1
man/stri_flatten.Rd | 7 +
man/stri_install.Rd | 3
man/stri_isempty.Rd | 5
man/stri_join.Rd | 11 ++
man/stri_length.Rd | 9 +
man/stri_locale_info.Rd | 3
man/stri_locate_all.Rd | 5
man/stri_locate_boundaries.Rd | 1
man/stri_locate_charclass.Rd | 9 +
man/stri_locate_coll.Rd | 15 ++
man/stri_locate_first.Rd | 6 +
man/stri_locate_fixed.Rd | 14 +-
man/stri_locate_last.Rd | 6 +
man/stri_locate_regex.Rd | 5
man/stri_locate_words.Rd | 1
man/stri_match_regex.Rd | 1
man/stri_numbytes.Rd | 3
man/stri_opts_collator.Rd | 5
man/stri_opts_regex.Rd | 5
man/stri_order.Rd | 3
man/stri_pad.Rd | 5
man/stri_rand_shuffle.Rd | 3
man/stri_rand_strings.Rd | 7 +
man/stri_replace_charclass.Rd | 3
man/stri_replace_coll.Rd | 4
man/stri_replace_fixed.Rd | 4
man/stri_replace_na.Rd | 5
man/stri_replace_regex.Rd | 10 +
man/stri_reverse.Rd | 5
man/stri_split_boundaries.Rd | 1
man/stri_split_charclass.Rd | 3
man/stri_split_fixed.Rd | 1
man/stri_split_regex.Rd | 1
man/stri_stats_general.Rd | 2
man/stri_stats_latex.Rd | 3
man/stri_sub.Rd | 16 +++
man/stri_trans_casemap.Rd | 11 ++
man/stri_trans_general.Rd | 11 ++
man/stri_trans_nf.Rd | 3
man/stri_trim.Rd | 7 +
man/stri_unique.Rd | 2
man/stri_wrap.Rd | 6 +
src/stri_exception.cpp | 6 -
src/stri_stringi.cpp | 41 ++++---
111 files changed, 876 insertions(+), 165 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-27 0.2.1
2013-07-25 0.2
2013-06-24 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-03 0.1.4
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Diff between stochvol versions 0.8-1 dated 2014-02-06 and 0.8-2 dated 2014-05-16
Description: This package provides efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner
DESCRIPTION | 10 -
MD5 | 30 ++---
NAMESPACE | 1
NEWS | 12 ++
R/wrapper.R | 2
build/vignette.rds |binary
data/exrates.RData |binary
inst/doc/article.pdf |binary
inst/include/update.h | 27 ++---
man/stochvol-package.Rd | 2
src/Makevars | 2
src/Makevars.win | 2
src/progutils.cpp | 10 -
src/progutils.h | 2
src/sampler.cpp | 255 ++++++++++++++++++++++++++++++++----------------
src/sampler.h | 11 +-
16 files changed, 235 insertions(+), 131 deletions(-)
Title: R Commander Plug-In for statistics at NMBU
Diff between RcmdrPlugin.NMBU versions 1.7.1 dated 2014-03-20 and 1.7.2 dated 2014-05-16
More information about RcmdrPlugin.NMBU at CRAN
Description: This package provides an Rcmdr "plug-in" extending some functions of linear models and providing an interface to PLS, LDA and QDA.
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
R/NMBU.GUI.Statistics.R | 1 +
R/NMBU.RcmdrPlugin.NMBU.R | 10 +++++++++-
4 files changed, 19 insertions(+), 10 deletions(-)
Permanent link
Title: Random Forests for Survival, Regression and Classification
(RF-SRC)
Diff between randomForestSRC versions 1.5.0 dated 2014-05-13 and 1.5.1 dated 2014-05-16
More information about randomForestSRC at CRAN
Description: A unified treatment of Breiman's random forests for survival, regression and classification problems based on Ishwaran and Kogalur's random survival forests (RSF) package. The package runs in both serial and parallel (OpenMP) modes.
Author: Hemant Ishwaran
Maintainer: Udaya B. Kogalur
DESCRIPTION | 8 +-
MD5 | 164 +++++++++++++++++++++++-----------------------
R/data.utilities.R | 2
R/factor.utilities.R | 2
R/find.interaction.R | 2
R/generic.predict.rfsrc.R | 2
R/impute.rfsrc.R | 2
R/max.subtree.R | 2
R/plot.competing.risk.R | 2
R/plot.rfsrc.R | 2
R/plot.survival.R | 2
R/plot.variable.R | 2
R/predict.rfsrc.R | 2
R/print.rfsrc.R | 2
R/rf2rfz.R | 2
R/rfsrc.R | 2
R/rfsrc.news.R | 2
R/utilities.R | 2
R/var.select.R | 2
R/vimp.R | 2
R/zzz.R | 2
configure.ac | 2
inst/NEWS | 8 +-
inst/doc/rsf-Rnews.pdf |binary
src/bootstrap.c | 2
src/bootstrap.h | 2
src/classification.c | 2
src/classification.h | 2
src/dataParser.c | 2
src/dataParser.h | 2
src/entry.c | 2
src/entry.h | 2
src/extern.h | 2
src/factor.h | 2
src/factorOps.c | 2
src/factorOps.h | 2
src/global.h | 2
src/importance.c | 2
src/importance.h | 2
src/impute.c | 2
src/impute.h | 2
src/node.h | 2
src/nodeOps.c | 2
src/nodeOps.h | 2
src/nrutil.c | 2
src/nrutil.h | 2
src/random.c | 2
src/random.h | 2
src/regression.c | 2
src/regression.h | 2
src/rfsrc.c | 26 +++++++
src/rfsrc.h | 2
src/rfsrcUtil.c | 2
src/rfsrcUtil.h | 2
src/split.c | 2
src/split.h | 2
src/splitClas.c | 2
src/splitClas.h | 2
src/splitRegr.c | 2
src/splitRegr.h | 2
src/splitSurv.c | 2
src/splitSurv.h | 2
src/splitUspv.c | 2
src/splitUspv.h | 2
src/splitUtil.c | 2
src/splitUtil.h | 2
src/stack.c | 2
src/stack.h | 2
src/stackOutput.c | 2
src/stackOutput.h | 2
src/stackPreDefined.c | 2
src/stackPreDefined.h | 2
src/survival.c | 2
src/survival.h | 2
src/survivalE.c | 2
src/survivalE.h | 2
src/terminal.h | 2
src/trace.c | 2
src/trace.h | 2
src/tree.c | 2
src/tree.h | 2
src/treeUtil.c | 2
src/treeUtil.h | 2
83 files changed, 193 insertions(+), 169 deletions(-)
Permanent link
Title: Solver for Delay Differential Equations
Diff between PBSddesolve versions 1.10.25 dated 2013-05-08 and 1.11.29 dated 2014-05-16
Description: This package solves systems of delay differential equations.
by interfacing numerical routines written by Simon N. Wood , with
contributions by Benjamin J. Cairns. These numerical routines first
appeared in Simon Wood's solv95 program.
This package includes a vignette and a complete user's guide.
'PBSddesolve' originally appeared on CRAN under the name 'ddesolve'.
That version is no longer supported. The current name emphasizes a close
association with other PBS packages, particularly 'PBSmodelling'.
Author: Alex Couture-Beil
Maintainer: Rowan Haigh
PBSddesolve-1.10.25/PBSddesolve/inst/doc/PBSddesolveIntro.R |only
PBSddesolve-1.10.25/PBSddesolve/inst/doc/PBSddesolveIntro.Rnw |only
PBSddesolve-1.11.29/PBSddesolve/DESCRIPTION | 37 +++++-----
PBSddesolve-1.11.29/PBSddesolve/MD5 | 22 ++---
PBSddesolve-1.11.29/PBSddesolve/R/zzz.r | 4 -
PBSddesolve-1.11.29/PBSddesolve/demo/blowflies.r | 9 +-
PBSddesolve-1.11.29/PBSddesolve/demo/icecream.r | 12 +--
PBSddesolve-1.11.29/PBSddesolve/inst/doc/ChangeLog.txt | 26 +++++--
PBSddesolve-1.11.29/PBSddesolve/inst/doc/PBSddesolve-UG.pdf |binary
PBSddesolve-1.11.29/PBSddesolve/inst/doc/PBSddesolveIntro.pdf |binary
PBSddesolve-1.11.29/PBSddesolve/inst/doc/solv95.pdf |binary
PBSddesolve-1.11.29/PBSddesolve/man/dde.Rd | 4 -
PBSddesolve-1.11.29/PBSddesolve/src/ddeq.c | 21 ++---
13 files changed, 76 insertions(+), 59 deletions(-)
Title: Analysis of evolutionary diversification
Diff between geiger versions 2.0.1 dated 2014-03-07 and 2.0.3 dated 2014-05-16
Description: macroevolutionary simulation and parameter estimation
related to diversification from comparative
phylogenetic data
Author: Luke Harmon
Maintainer: Matt Pennell
DESCRIPTION | 8 +-
MD5 | 35 +++++-----
R/congruify.R | 4 -
R/disparity.R | 81 +++++++++++++----------
R/edges.R | 4 -
R/gbresolve.R | 4 -
R/medusa.R | 169 +++++++++++++++++--------------------------------
R/traits.R | 19 ++++-
R/utilities-misc.R | 5 -
R/utilities-phylo.R | 20 ++---
README.md |only
man/congruify.phylo.Rd | 6 +
man/dtt.Rd | 9 +-
man/fitContinuous.Rd | 12 ++-
man/fitDiscrete.Rd | 6 +
man/medusa.Rd | 9 +-
man/nodelabel.phylo.Rd | 24 +++---
man/sim.char.Rd | 4 -
man/subset.phylo.Rd | 5 -
19 files changed, 203 insertions(+), 221 deletions(-)
Title: Fractional Gaussian Noise and power law decay time series model
fitting
Diff between FGN versions 2.0-11 dated 2013-04-13 and 2.0-12 dated 2014-05-16
Description: Exact MLE and Whittle MLE estimation for power law decay models.
Author: A.I. McLeod and Justin Veenstra
Maintainer: A.I. McLeod
FGN-2.0-11/FGN/man/WLoglikelihood.Rd |only
FGN-2.0-12/FGN/DESCRIPTION | 17 ++++++++---------
FGN-2.0-12/FGN/MD5 | 13 ++++++-------
FGN-2.0-12/FGN/NAMESPACE | 5 +++--
FGN-2.0-12/FGN/NEWS | 8 ++++++++
FGN-2.0-12/FGN/man/FGN-package.Rd | 4 ++--
FGN-2.0-12/FGN/man/sdfhd.Rd | 6 ++++--
FGN-2.0-12/FGN/src/tacf.c | 2 +-
8 files changed, 32 insertions(+), 23 deletions(-)
Title: Bayesian multinomial mixture
Diff between bmmix versions 0.1-0 dated 2014-05-09 and 0.1-1 dated 2014-05-16
Description: Bayesian multinomial mixture model
Author: Thibaut Jombart
Maintainer: Thibaut Jombart
ChangeLog | 14 ++++++++++++-
DESCRIPTION | 8 +++----
MD5 | 8 +++----
R/bmmix.R | 62 +++++++++++++++++++++++++++++++++++++++++++++++------------
man/bmmix.Rd | 21 ++++++++++++++++---
5 files changed, 88 insertions(+), 25 deletions(-)
Title: Big Random Forests: Classification and Regression Forests for
Large Data Sets
Diff between bigrf versions 0.1-6 dated 2013-06-29 and 0.1-11 dated 2014-05-16
Description: This is an implementation of Leo Breiman's and Adele Cutler's
Random Forest algorithms for classification and regression, with optimizations
for performance and for handling of data sets that are too large to be
processed in memory. Forests can be built in parallel at two levels. First,
trees can be grown in parallel on a single machine using foreach. Second,
multiple forests can be built in parallel on multiple machines, then merged
into one. For large data sets, disk-based big.matrix's may be used for storing
data and intermediate computations, to prevent excessive virtual memory
swapping by the operating system. Currently, only classification forests with
a subset of the functionality in Breiman and Cutler's original code are
implemented. More functionality and regression trees may be added in the
future.
Author: Aloysius Lim [aut, cre],
Leo Breiman [aut],
Adele Cutler [aut]
Maintainer: Aloysius Lim
bigrf-0.1-11/bigrf/DESCRIPTION | 52 +++++++++++------------
bigrf-0.1-11/bigrf/MD5 | 39 ++++++++---------
bigrf-0.1-11/bigrf/NAMESPACE | 2
bigrf-0.1-11/bigrf/NEWS | 39 +++++++++++++++++
bigrf-0.1-11/bigrf/R/grow.R | 6 +-
bigrf-0.1-11/bigrf/R/predict.R | 3 -
bigrf-0.1-11/bigrf/README.md | 10 ++--
bigrf-0.1-11/bigrf/man/bigrf-package.Rd | 9 +--
bigrf-0.1-11/bigrf/man/bigrfc.Rd | 4 -
bigrf-0.1-11/bigrf/man/fastimp-methods.Rd | 4 -
bigrf-0.1-11/bigrf/man/generateSyntheticClass.Rd | 4 -
bigrf-0.1-11/bigrf/man/grow-methods.Rd | 10 ++--
bigrf-0.1-11/bigrf/man/interactions-methods.Rd | 4 -
bigrf-0.1-11/bigrf/man/merge-methods.Rd | 6 +-
bigrf-0.1-11/bigrf/man/outliers-methods.Rd | 4 -
bigrf-0.1-11/bigrf/man/predict-methods.Rd | 6 +-
bigrf-0.1-11/bigrf/man/prototypes-methods.Rd | 4 -
bigrf-0.1-11/bigrf/man/proximities-methods.Rd | 4 -
bigrf-0.1-11/bigrf/man/scaling-methods.Rd | 4 -
bigrf-0.1-11/bigrf/man/varimp-methods.Rd | 4 -
bigrf-0.1-6/bigrf/INSTALL-WINDOWS |only
21 files changed, 128 insertions(+), 90 deletions(-)