Title: sjPlot - data visualization for statistics in social science
Diff between sjPlot versions 1.4.1 dated 2014-04-17 and 1.4.2 dated 2014-05-20
Description: Collection of several plotting / table output functions for
visualizing data and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Luedecke
DESCRIPTION | 8
MD5 | 142 +++----
NAMESPACE | 2
NEWS | 599 +++++++++++++++--------------
R/sjImportSPSS.R | 702 +++++++++++++++++-----------------
R/sjRecode.R | 2
R/sjTabItemAnalysis.R | 864 +++++++++++++++++++++----------------------
man/efc.Rd | 82 ++--
man/sjPlot-package.Rd | 4
man/sjc.cluster.Rd | 185 ++++-----
man/sjc.dend.Rd | 104 ++---
man/sjc.elbow.Rd | 75 +--
man/sjc.grpdisc.Rd | 112 ++---
man/sjc.kgap.Rd | 160 +++----
man/sjc.qclus.Rd | 589 ++++++++++++-----------------
man/sji.SPSS.Rd | 103 ++---
man/sji.convertToLabel.Rd | 73 +--
man/sji.convertToValue.Rd | 70 +--
man/sji.getValueLabels.Rd | 73 +--
man/sji.getVariableLabels.Rd | 74 +--
man/sji.setValueLabels.Rd | 92 ++--
man/sji.setVariableLabels.Rd | 120 ++---
man/sji.viewSPSS.Rd | 259 ++++++------
man/sjp.aov1.Rd | 538 +++++++++++---------------
man/sjp.chi2.Rd | 208 ++++------
man/sjp.corr.Rd | 427 +++++++++------------
man/sjp.frq.Rd | 805 +++++++++++++++++-----------------------
man/sjp.glm.Rd | 556 ++++++++++++---------------
man/sjp.glm.ma.Rd | 74 +--
man/sjp.glmm.Rd | 550 ++++++++++++---------------
man/sjp.grpfrq.Rd | 679 +++++++++++++--------------------
man/sjp.likert.Rd | 587 ++++++++++++-----------------
man/sjp.lm.Rd | 355 +++++++----------
man/sjp.lm.int.Rd | 506 ++++++++++---------------
man/sjp.lm.ma.Rd | 25 -
man/sjp.lm1.Rd | 356 +++++++----------
man/sjp.lmm.Rd | 527 +++++++++++---------------
man/sjp.pca.Rd | 459 ++++++++++------------
man/sjp.reglin.Rd | 112 ++---
man/sjp.scatter.Rd | 483 ++++++++++--------------
man/sjp.stackfrq.Rd | 574 ++++++++++++----------------
man/sjp.vif.Rd | 56 +-
man/sjp.xtab.Rd | 692 ++++++++++++++--------------------
man/sjt.corr.Rd | 230 ++++-------
man/sjt.df.Rd | 319 +++++++--------
man/sjt.frq.Rd | 432 +++++++++------------
man/sjt.glm.Rd | 550 ++++++++++++---------------
man/sjt.itemanalysis.Rd | 432 +++++++++------------
man/sjt.lm.Rd | 519 +++++++++++--------------
man/sjt.pca.Rd | 391 ++++++++-----------
man/sjt.stackfrq.Rd | 425 +++++++++------------
man/sjt.xtab.Rd | 493 +++++++++++-------------
man/sju.adjustPlotRange.y.Rd | 91 ++--
man/sju.aov1.levene.Rd | 57 +-
man/sju.betaCoef.Rd | 80 +--
man/sju.chi2.gof.Rd | 77 +--
man/sju.cramer.Rd | 52 +-
man/sju.cronbach.Rd | 54 +-
man/sju.dicho.Rd | 76 +--
man/sju.groupVar.Rd | 141 +++----
man/sju.groupVarLabels.Rd | 160 +++----
man/sju.mic.Rd | 93 ++--
man/sju.mwu.Rd | 90 ++--
man/sju.phi.Rd | 52 +-
man/sju.recode.Rd | 47 +-
man/sju.recodeTo.Rd | 97 ++--
man/sju.reliability.Rd | 170 ++++----
man/sju.setNA.Rd | 62 +--
man/sju.table.values.Rd | 79 +--
man/sju.weight.Rd | 78 +--
man/sju.weight2.Rd | 92 ++--
man/sju.wordwrap.Rd | 58 +-
72 files changed, 8485 insertions(+), 10075 deletions(-)
Title: Routines for fitting kinetic models with one or more state
variables to chemical degradation data
Diff between mkin versions 0.9-27 dated 2014-05-10 and 0.9-28 dated 2014-05-20
Description: Calculation routines based on the FOCUS Kinetics Report (2006).
Includes a function for conveniently defining differential equation models,
model solution based on eigenvalues if possible or using numerical solvers
and a choice of the optimisation methods made available by the FME package
(default is a Levenberg-Marquardt variant). Please note that no warranty is
implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph],
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke
DESCRIPTION | 12 ++--
MD5 | 26 ++++----
R/mkinfit.R | 18 +++++-
R/mkinparplot.R | 5 +
R/transform_odeparms.R | 4 -
README.md | 2
inst/doc/FOCUS_L.html | 141 +++++++++++++++++++++++------------------------
inst/doc/FOCUS_Z.pdf |binary
inst/doc/mkin.Rnw | 95 ++++++++++++++++++++++++++++++-
inst/doc/mkin.pdf |binary
man/ilr.Rd | 6 +-
vignettes/header.tex | 1
vignettes/mkin.Rnw | 95 ++++++++++++++++++++++++++++++-
vignettes/references.bib | 35 +++++++----
14 files changed, 317 insertions(+), 123 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2010-11-30 4.3.2
2010-10-23 4.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2010-11-30 4.3.2
2010-10-23 4.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2011-09-19 4.3.3
2010-11-30 4.3.2
2010-10-23 4.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2010-11-30 4.3.2
2010-10-23 4.3.0
Title: Xpose 4
Diff between xpose4 versions 4.4.1 dated 2013-08-13 and 4.5.0 dated 2014-05-20
Description: Xpose is collection of functions to be used as a model
building aid for non-linear mixed effects (population) analysis
using NONMEM. It facilitates data set checkout, exploration and
visualization, model diagnostics, candidate covariate identification
and model comparison.
Author: Andrew Hooker
Maintainer: Andrew Hooker
xpose4-4.4.1/xpose4/inst/NEWS |only
xpose4-4.4.1/xpose4/inst/changelog.txt |only
xpose4-4.4.1/xpose4/inst/readme.txt |only
xpose4-4.5.0/xpose4/DESCRIPTION | 25
xpose4-4.5.0/xpose4/MD5 | 401 ++++++++++++-
xpose4-4.5.0/xpose4/NAMESPACE | 4
xpose4-4.5.0/xpose4/NEWS |only
xpose4-4.5.0/xpose4/R |only
xpose4-4.5.0/xpose4/README.md |only
xpose4-4.5.0/xpose4/data |only
xpose4-4.5.0/xpose4/man/Data.Rd |only
xpose4-4.5.0/xpose4/man/absval.cwres.vs.cov.bw.Rd |only
xpose4-4.5.0/xpose4/man/absval.cwres.vs.pred.Rd |only
xpose4-4.5.0/xpose4/man/absval.cwres.vs.pred.by.cov.Rd |only
xpose4-4.5.0/xpose4/man/absval.delta.vs.cov.model.comp.Rd |only
xpose4-4.5.0/xpose4/man/absval.iwres.vs.ipred.Rd |only
xpose4-4.5.0/xpose4/man/absval.iwres.vs.ipred.by.cov.Rd |only
xpose4-4.5.0/xpose4/man/absval.iwres.vs.pred.Rd |only
xpose4-4.5.0/xpose4/man/absval.iwres.wres.vs.ipred.pred.Rd |only
xpose4-4.5.0/xpose4/man/absval.wres.vs.cov.bw.Rd |only
xpose4-4.5.0/xpose4/man/absval.wres.vs.idv.Rd |only
xpose4-4.5.0/xpose4/man/absval.wres.vs.pred.Rd |only
xpose4-4.5.0/xpose4/man/absval.wres.vs.pred.by.cov.Rd |only
xpose4-4.5.0/xpose4/man/add.functions.Rd |only
xpose4-4.5.0/xpose4/man/add.grid.table.Rd |only
xpose4-4.5.0/xpose4/man/add.model.comp.Rd |only
xpose4-4.5.0/xpose4/man/addit.gof.Rd |only
xpose4-4.5.0/xpose4/man/autocorr.cwres.Rd |only
xpose4-4.5.0/xpose4/man/autocorr.wres.Rd |only
xpose4-4.5.0/xpose4/man/basic.gof.Rd |only
xpose4-4.5.0/xpose4/man/basic.model.comp.Rd |only
xpose4-4.5.0/xpose4/man/boot.hist.Rd |only
xpose4-4.5.0/xpose4/man/bootgam.print.Rd |only
xpose4-4.5.0/xpose4/man/bootscm.import.Rd |only
xpose4-4.5.0/xpose4/man/cat.dv.vs.idv.sb.Rd |only
xpose4-4.5.0/xpose4/man/cat.pc.Rd |only
xpose4-4.5.0/xpose4/man/change.graphical.parameters.Rd |only
xpose4-4.5.0/xpose4/man/change.misc.parameters.Rd |only
xpose4-4.5.0/xpose4/man/change.parm.Rd |only
xpose4-4.5.0/xpose4/man/change.var.name.Rd |only
xpose4-4.5.0/xpose4/man/change.xlabel.Rd |only
xpose4-4.5.0/xpose4/man/change.xvardef.Rd |only
xpose4-4.5.0/xpose4/man/compute.cwres.Rd |only
xpose4-4.5.0/xpose4/man/create.mirror.Rd |only
xpose4-4.5.0/xpose4/man/create.xpose.plot.classes.Rd |only
xpose4-4.5.0/xpose4/man/createXposeClasses.Rd |only
xpose4-4.5.0/xpose4/man/cwres.dist.hist.Rd |only
xpose4-4.5.0/xpose4/man/cwres.dist.qq.Rd |only
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xpose4-4.5.0/xpose4/man/cwres.vs.idv.bw.Rd |only
xpose4-4.5.0/xpose4/man/cwres.vs.pred.Rd |only
xpose4-4.5.0/xpose4/man/cwres.vs.pred.bw.Rd |only
xpose4-4.5.0/xpose4/man/cwres.wres.vs.idv.Rd |only
xpose4-4.5.0/xpose4/man/dOFV.vs.cov.Rd |only
xpose4-4.5.0/xpose4/man/dOFV.vs.id.Rd |only
xpose4-4.5.0/xpose4/man/dOFV1.vs.dOFV2.Rd |only
xpose4-4.5.0/xpose4/man/data.checkout.Rd |only
xpose4-4.5.0/xpose4/man/db.names.Rd |only
xpose4-4.5.0/xpose4/man/dist.hist.Rd |only
xpose4-4.5.0/xpose4/man/dist.qq.Rd |only
xpose4-4.5.0/xpose4/man/dv.preds.vs.idv.rd |only
xpose4-4.5.0/xpose4/man/dv.vs.idv.Rd |only
xpose4-4.5.0/xpose4/man/dv.vs.ipred.Rd |only
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xpose4-4.5.0/xpose4/man/dv.vs.pred.ipred.Rd |only
xpose4-4.5.0/xpose4/man/export.graph.par.Rd |only
xpose4-4.5.0/xpose4/man/export.variable.definitions.Rd |only
xpose4-4.5.0/xpose4/man/functions-classic.Rd |only
xpose4-4.5.0/xpose4/man/functions-data.Rd |only
xpose4-4.5.0/xpose4/man/functions-generic.Rd |only
xpose4-4.5.0/xpose4/man/gof.Rd |only
xpose4-4.5.0/xpose4/man/import.graph.par.Rd |only
xpose4-4.5.0/xpose4/man/import.variable.definitions.Rd |only
xpose4-4.5.0/xpose4/man/ind.plots.Rd |only
xpose4-4.5.0/xpose4/man/ind.plots.wres.hist.Rd |only
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xpose4-4.5.0/xpose4/man/internal.functions.Rd |only
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xpose4-4.5.0/xpose4/man/make.sb.data.Rd |only
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xpose4-4.5.0/xpose4/man/nsim.Rd |only
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xpose4-4.5.0/xpose4/man/print.xpose.multiple.plot.Rd |only
xpose4-4.5.0/xpose4/man/randtest.hist.Rd |only
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xpose4-4.5.0/xpose4/man/read.TTE.sim.data.Rd |only
xpose4-4.5.0/xpose4/man/read.nm.output.Rd |only
xpose4-4.5.0/xpose4/man/read.nm.tables.Rd |only
xpose4-4.5.0/xpose4/man/read.npc.vpc.results.Rd |only
xpose4-4.5.0/xpose4/man/read.vpctab.Rd |only
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xpose4-4.5.0/xpose4/man/tables.Rd |only
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xpose4-4.5.0/xpose4/man/xp.dofv.plot.Rd |only
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xpose4-4.5.0/xpose4/man/xpose.VPC.categorical.Rd |only
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xpose4-4.5.0/xpose4/man/xpose.create.title.Rd |only
xpose4-4.5.0/xpose4/man/xpose.create.title.text.Rd |only
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xpose4-4.5.0/xpose4/man/xpose.dev.new.Rd |only
xpose4-4.5.0/xpose4/man/xpose.gam.Rd |only
xpose4-4.5.0/xpose4/man/xpose.license.citation.Rd |only
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xpose4-4.5.0/xpose4/man/xpose.multiple.plot.default.Rd |only
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xpose4-4.5.0/xpose4/man/xpose.panel.default.Rd |only
xpose4-4.5.0/xpose4/man/xpose.panel.histogram.Rd |only
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xpose4-4.5.0/xpose4/man/xpose.panel.splom.Rd |only
xpose4-4.5.0/xpose4/man/xpose.plot.bw.Rd |only
xpose4-4.5.0/xpose4/man/xpose.plot.default.Rd |only
xpose4-4.5.0/xpose4/man/xpose.plot.histogram.Rd |only
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xpose4-4.5.0/xpose4/man/xpose.plot.splom.Rd |only
xpose4-4.5.0/xpose4/man/xpose.prefs-class.Rd |only
xpose4-4.5.0/xpose4/man/xpose.string.print.Rd |only
xpose4-4.5.0/xpose4/man/xpose.yscale.components.log10.Rd |only
xpose4-4.5.0/xpose4/man/xpose4-package.Rd | 150 +++-
xpose4-4.5.0/xpose4/man/xpose4classic-internal.Rd |only
xpose4-4.5.0/xpose4/man/xpose4classic-package.Rd |only
xpose4-4.5.0/xpose4/man/xpose4data-internal.Rd |only
xpose4-4.5.0/xpose4/man/xpose4data-package.Rd |only
xpose4-4.5.0/xpose4/man/xpose4generic-package.Rd |only
xpose4-4.5.0/xpose4/man/xpose4psn-package.Rd |only
xpose4-4.5.0/xpose4/man/xpose4specific-internal.Rd |only
xpose4-4.5.0/xpose4/man/xpose4specific-package.Rd |only
xpose4-4.5.0/xpose4/man/xsubset.Rd |only
xpose4-4.5.0/xpose4/man/xvardef.Rd |only
165 files changed, 504 insertions(+), 76 deletions(-)
Title: Utilities to fit paired comparison models for preferences
Diff between prefmod versions 0.8-31 dated 2012-05-14 and 0.8-32 dated 2014-05-20
Description: Generates design matrix for analysing real paired comparisons and derived paired comparison data (Likert type items/ratings or rankings) using a loglinear approach. Fits loglinear Bradley-Terry model (LLBT) exploiting an eliminate feature. Computes pattern models for paired comparisons, rankings, and ratings. Some treatment of missing values (MCAR and MNAR). Fits latent class (mixture) models for paired comparison, rating and ranking patterns using a non-parametric ML approach.
Author: Reinhold Hatzinger [aut],
Marco Johannes Maier [cre]
Maintainer: Marco Johannes Maier
prefmod-0.8-31/prefmod/data/baseball.rda |only
prefmod-0.8-31/prefmod/data/cemspc.rda |only
prefmod-0.8-31/prefmod/data/dat4.rda |only
prefmod-0.8-31/prefmod/data/euro55.2.des.rda |only
prefmod-0.8-31/prefmod/data/issp2000.rda |only
prefmod-0.8-31/prefmod/data/salad.rda |only
prefmod-0.8-31/prefmod/data/tennis.rda |only
prefmod-0.8-31/prefmod/data/xmpl.rda |only
prefmod-0.8-32/prefmod/DESCRIPTION | 33 ++++----
prefmod-0.8-32/prefmod/MD5 | 97 ++++++++++++-------------
prefmod-0.8-32/prefmod/R/npml.parts.R | 2
prefmod-0.8-32/prefmod/R/pattRrep.fit.R | 8 +-
prefmod-0.8-32/prefmod/build |only
prefmod-0.8-32/prefmod/data/baseball.RData |only
prefmod-0.8-32/prefmod/data/carconf.RData |binary
prefmod-0.8-32/prefmod/data/cemspc.RData |only
prefmod-0.8-32/prefmod/data/dat4.RData |only
prefmod-0.8-32/prefmod/data/euro55.2.des.RData |only
prefmod-0.8-32/prefmod/data/immig.RData |binary
prefmod-0.8-32/prefmod/data/issp2000.RData |only
prefmod-0.8-32/prefmod/data/music.RData |binary
prefmod-0.8-32/prefmod/data/salad.RData |only
prefmod-0.8-32/prefmod/data/tennis.RData |only
prefmod-0.8-32/prefmod/data/trdel.RData |binary
prefmod-0.8-32/prefmod/data/xmpl.RData |only
prefmod-0.8-32/prefmod/inst/CITATION | 45 +++++++----
prefmod-0.8-32/prefmod/man/baseball.Rd | 31 ++++---
prefmod-0.8-32/prefmod/man/carconf.Rd | 8 --
prefmod-0.8-32/prefmod/man/cemspc.Rd | 15 ++-
prefmod-0.8-32/prefmod/man/checkMIS.Rd | 27 +++---
prefmod-0.8-32/prefmod/man/dat4.Rd | 11 +-
prefmod-0.8-32/prefmod/man/euro55.2.des.Rd | 22 ++---
prefmod-0.8-32/prefmod/man/expand.mat.Rd | 9 +-
prefmod-0.8-32/prefmod/man/immig.Rd | 15 +--
prefmod-0.8-32/prefmod/man/issp2000.Rd | 8 --
prefmod-0.8-32/prefmod/man/llbt.design.Rd | 38 ++++-----
prefmod-0.8-32/prefmod/man/llbt.fit.Rd | 50 ++++++------
prefmod-0.8-32/prefmod/man/llbt.worth.Rd | 58 +++++++-------
prefmod-0.8-32/prefmod/man/llbtPC.fit.Rd | 11 +-
prefmod-0.8-32/prefmod/man/music.Rd | 66 ++++++++---------
prefmod-0.8-32/prefmod/man/patt.design.Rd | 52 +++++--------
prefmod-0.8-32/prefmod/man/patt.worth.Rd | 12 +--
prefmod-0.8-32/prefmod/man/pattL.fit.Rd | 57 ++++++--------
prefmod-0.8-32/prefmod/man/pattLrep.fit.Rd | 11 +-
prefmod-0.8-32/prefmod/man/pattPC.fit.Rd | 67 ++++++++---------
prefmod-0.8-32/prefmod/man/pattR.fit.Rd | 16 +---
prefmod-0.8-32/prefmod/man/pattRrep.fit.Rd | 15 ++-
prefmod-0.8-32/prefmod/man/pattnpml.fit.Rd | 77 ++++++++-----------
prefmod-0.8-32/prefmod/man/plot.wmat.Rd | 18 ++--
prefmod-0.8-32/prefmod/man/plotworth.Rd | 18 ++--
prefmod-0.8-32/prefmod/man/prefmod-package.Rd | 55 +++++---------
prefmod-0.8-32/prefmod/man/print.pattMod.Rd | 6 -
prefmod-0.8-32/prefmod/man/salad.Rd | 14 ++-
prefmod-0.8-32/prefmod/man/simPC.Rd | 1
prefmod-0.8-32/prefmod/man/summary.pattNPML.Rd | 22 ++---
prefmod-0.8-32/prefmod/man/tennis.Rd | 11 +-
prefmod-0.8-32/prefmod/man/trdel.Rd | 14 ++-
prefmod-0.8-32/prefmod/man/xmpl.Rd | 7 -
58 files changed, 498 insertions(+), 529 deletions(-)
Title: Categorical Data Analysis and Visualization
Diff between extracat versions 1.6-4 dated 2013-12-12 and 1.7-0 dated 2014-05-20
Description: Categorical Data Analysis and Visualization
Author: Alexander Pilhoefer
Maintainer: Alexander Pilhoefer
extracat-1.6-4/extracat/man/f3dcol.Rd |only
extracat-1.6-4/extracat/man/fluctile3d.Rd |only
extracat-1.7-0/extracat/DESCRIPTION | 12
extracat-1.7-0/extracat/MD5 | 86 +-
extracat-1.7-0/extracat/NAMESPACE | 7
extracat-1.7-0/extracat/R/GSAC.R |only
extracat-1.7-0/extracat/R/JCBCI.R |only
extracat-1.7-0/extracat/R/auxiliar.R | 71 +-
extracat-1.7-0/extracat/R/circutile.R |only
extracat-1.7-0/extracat/R/facetshade.R |only
extracat-1.7-0/extracat/R/fastRcrit.R | 24
extracat-1.7-0/extracat/R/fluctuations.R | 544 ++++++++++-------
extracat-1.7-0/extracat/R/getcolors.R | 18
extracat-1.7-0/extracat/R/heattile.R | 25
extracat-1.7-0/extracat/R/imatdat.R |only
extracat-1.7-0/extracat/R/kendalls.R | 21
extracat-1.7-0/extracat/R/load.R |only
extracat-1.7-0/extracat/R/qBCI.R | 20
extracat-1.7-0/extracat/R/rmb.R | 33 -
extracat-1.7-0/extracat/R/scpcp.R | 801 ++++++++++++--------------
extracat-1.7-0/extracat/R/scpcpBETA.R |only
extracat-1.7-0/extracat/R/sortca.R |only
extracat-1.7-0/extracat/R/subtable.R | 80 ++
extracat-1.7-0/extracat/R/untableSet.R | 32 -
extracat-1.7-0/extracat/R/visid.R |only
extracat-1.7-0/extracat/R/wdcor.R | 113 +++
extracat-1.7-0/extracat/data/CPScluster.rda |binary
extracat-1.7-0/extracat/data/GeneEx.RData |binary
extracat-1.7-0/extracat/data/USR.rda |binary
extracat-1.7-0/extracat/data/carcustomers.rda |binary
extracat-1.7-0/extracat/data/dmc.rda |binary
extracat-1.7-0/extracat/data/olives.rda |binary
extracat-1.7-0/extracat/data/plants.rda |binary
extracat-1.7-0/extracat/man/CBCI.Rd |only
extracat-1.7-0/extracat/man/GSAC.Rd |only
extracat-1.7-0/extracat/man/JBCI.Rd |only
extracat-1.7-0/extracat/man/cfluctile.Rd | 9
extracat-1.7-0/extracat/man/cmat.Rd | 5
extracat-1.7-0/extracat/man/dcor.Rd | 5
extracat-1.7-0/extracat/man/facetshade.Rd |only
extracat-1.7-0/extracat/man/fluctile.Rd | 45 +
extracat-1.7-0/extracat/man/getcolors.Rd | 5
extracat-1.7-0/extracat/man/heattile.Rd | 9
extracat-1.7-0/extracat/man/idat.Rd | 9
extracat-1.7-0/extracat/man/imat.Rd | 9
extracat-1.7-0/extracat/man/itab.Rd |only
extracat-1.7-0/extracat/man/optile.Rd | 3
extracat-1.7-0/extracat/man/scpcp.Rd | 11
extracat-1.7-0/extracat/man/setcover.Rd |only
extracat-1.7-0/extracat/man/subtable.Rd | 6
extracat-1.7-0/extracat/man/untableSet.Rd | 6
extracat-1.7-0/extracat/man/visid.Rd |only
extracat-1.7-0/extracat/src/optile.c | 321 +++++++---
53 files changed, 1448 insertions(+), 882 deletions(-)
Title: Taxonomic information from around the web.
Diff between taxize versions 0.2.2 dated 2014-03-02 and 0.3.0 dated 2014-05-20
Description: Taxonomic information from around the web. This package
interacts with a suite of web APIs for taxonomic tasks, such
as verifying species names, getting taxonomic hierarchies,
and verifying name spelling.
Author: Scott Chamberlain [aut, cre],
Eduard Szoecs [aut],
Carl Boettiger [aut],
Karthik Ram [aut],
Ignasi Bartomeus [aut],
John Baumgartner [aut]
Maintainer: Scott Chamberlain
taxize-0.2.2/taxize/inst/doc/taxize_infotable.pdf |only
taxize-0.2.2/taxize/inst/doc/taxize_vignette.pdf |only
taxize-0.2.2/taxize/inst/vign/cache/taxname_ec1172b5285f1ec553a2cff9c1f9a194.RData |only
taxize-0.2.2/taxize/inst/vign/cache/taxname_ec1172b5285f1ec553a2cff9c1f9a194.rdb |only
taxize-0.2.2/taxize/inst/vign/cache/taxname_ec1172b5285f1ec553a2cff9c1f9a194.rdx |only
taxize-0.2.2/taxize/man/gbif_suggestfields.Rd |only
taxize-0.2.2/taxize/man/get_genes.Rd |only
taxize-0.2.2/taxize/man/get_genes_avail.Rd |only
taxize-0.2.2/taxize/man/get_seqs.Rd |only
taxize-0.2.2/taxize/man/getxmldata.Rd |only
taxize-0.2.2/taxize/man/itis_name.Rd |only
taxize-0.2.2/taxize/man/tp_acceptednames.Rd |only
taxize-0.2.2/taxize/man/tp_namedistributions.Rd |only
taxize-0.2.2/taxize/man/tp_namereferences.Rd |only
taxize-0.2.2/taxize/vignettes/taxize_infotable.html |only
taxize-0.2.2/taxize/vignettes/taxize_vignette.html |only
taxize-0.3.0/taxize/DESCRIPTION | 18
taxize-0.3.0/taxize/LICENSE |only
taxize-0.3.0/taxize/MD5 | 507 +++++-----
taxize-0.3.0/taxize/NAMESPACE | 12
taxize-0.3.0/taxize/NEWS | 60 -
taxize-0.3.0/taxize/R/apg_lookup.R | 1
taxize-0.3.0/taxize/R/class2tree.R | 13
taxize-0.3.0/taxize/R/classification.R | 74 +
taxize-0.3.0/taxize/R/col_downstream.R | 75 -
taxize-0.3.0/taxize/R/col_search.R | 2
taxize-0.3.0/taxize/R/comm2sci.R | 1
taxize-0.3.0/taxize/R/deprecated.R | 201 ++-
taxize-0.3.0/taxize/R/downstream.R | 6
taxize-0.3.0/taxize/R/eol_dataobjects.R | 3
taxize-0.3.0/taxize/R/eol_invasive.R | 63 -
taxize-0.3.0/taxize/R/eol_pages.R | 26
taxize-0.3.0/taxize/R/eol_search.R | 29
taxize-0.3.0/taxize/R/gbif_parse.R | 5
taxize-0.3.0/taxize/R/get_colid.R | 40
taxize-0.3.0/taxize/R/get_eolid.R | 80 +
taxize-0.3.0/taxize/R/get_gbifid.R | 67 -
taxize-0.3.0/taxize/R/get_ids.R | 12
taxize-0.3.0/taxize/R/get_tpsid.R | 27
taxize-0.3.0/taxize/R/get_tsn.R | 150 +-
taxize-0.3.0/taxize/R/get_uid.R | 10
taxize-0.3.0/taxize/R/gni_details.R | 2
taxize-0.3.0/taxize/R/gni_parse.R | 2
taxize-0.3.0/taxize/R/gni_search.R | 2
taxize-0.3.0/taxize/R/gnr_resolve.R | 122 +-
taxize-0.3.0/taxize/R/iplant_resolve.R |only
taxize-0.3.0/taxize/R/ipni_search.R |only
taxize-0.3.0/taxize/R/itis.R | 385 +++----
taxize-0.3.0/taxize/R/itis_downstream.R | 39
taxize-0.3.0/taxize/R/itis_name.R | 11
taxize-0.3.0/taxize/R/itis_native.R | 4
taxize-0.3.0/taxize/R/itis_taxrank.R | 3
taxize-0.3.0/taxize/R/itis_terms.R | 7
taxize-0.3.0/taxize/R/iucn_summary.R | 2
taxize-0.3.0/taxize/R/ncbi_getbyid.R | 29
taxize-0.3.0/taxize/R/ncbi_getbyname.R | 65 -
taxize-0.3.0/taxize/R/ncbi_search.R | 64 -
taxize-0.3.0/taxize/R/phylomatic_tree.R | 1
taxize-0.3.0/taxize/R/resolve.R |only
taxize-0.3.0/taxize/R/sci2comm.R | 9
taxize-0.3.0/taxize/R/scrapenames.r | 52 -
taxize-0.3.0/taxize/R/tax_agg.R | 5
taxize-0.3.0/taxize/R/tax_name.R | 14
taxize-0.3.0/taxize/R/tax_rank.R | 6
taxize-0.3.0/taxize/R/taxize-package.R | 59 -
taxize-0.3.0/taxize/R/taxize_capwords.r | 3
taxize-0.3.0/taxize/R/tnrs.R | 9
taxize-0.3.0/taxize/R/tp_accnames.R | 97 +
taxize-0.3.0/taxize/R/tp_dist.R | 20
taxize-0.3.0/taxize/R/tp_refs.R | 65 -
taxize-0.3.0/taxize/R/tp_search.R | 6
taxize-0.3.0/taxize/R/tp_summary.R | 45
taxize-0.3.0/taxize/R/tp_synonyms.R | 31
taxize-0.3.0/taxize/R/tpl_search.r | 25
taxize-0.3.0/taxize/R/ubio_classification.R | 6
taxize-0.3.0/taxize/R/ubio_classification_search.R | 52 -
taxize-0.3.0/taxize/R/ubio_id.R | 75 -
taxize-0.3.0/taxize/R/ubio_search.R | 53 -
taxize-0.3.0/taxize/R/ubio_synonyms.R | 34
taxize-0.3.0/taxize/R/vascan_search.r | 4
taxize-0.3.0/taxize/R/zzz.R | 120 ++
taxize-0.3.0/taxize/README.md | 59 -
taxize-0.3.0/taxize/build/vignette.rds |binary
taxize-0.3.0/taxize/inst/CITATION | 17
taxize-0.3.0/taxize/inst/doc/taxize_infotable.Rmd | 1
taxize-0.3.0/taxize/inst/doc/taxize_infotable.html |only
taxize-0.3.0/taxize/inst/doc/taxize_vignette.Rmd | 176 +--
taxize-0.3.0/taxize/inst/doc/taxize_vignette.html |only
taxize-0.3.0/taxize/inst/ignore/taxonclass.R |only
taxize-0.3.0/taxize/inst/ignore/taxonclass2.R |only
taxize-0.3.0/taxize/inst/ignore/try_with_timeout.R |only
taxize-0.3.0/taxize/inst/vign/cache/__packages | 10
taxize-0.3.0/taxize/inst/vign/cache/taxname_7297fd0eac6d20cb0c418a18b1be6438.RData |only
taxize-0.3.0/taxize/inst/vign/cache/taxname_7297fd0eac6d20cb0c418a18b1be6438.rdb |only
taxize-0.3.0/taxize/inst/vign/cache/taxname_7297fd0eac6d20cb0c418a18b1be6438.rdx |only
taxize-0.3.0/taxize/inst/vign/taxize_infotable.Rmd | 3
taxize-0.3.0/taxize/inst/vign/taxize_infotable.md | 1
taxize-0.3.0/taxize/inst/vign/taxize_vignette.Rmd | 50
taxize-0.3.0/taxize/inst/vign/taxize_vignette.md | 176 +--
taxize-0.3.0/taxize/man/apg_families.Rd | 1
taxize-0.3.0/taxize/man/apg_genera.Rd | 1
taxize-0.3.0/taxize/man/apg_lookup.Rd | 11
taxize-0.3.0/taxize/man/apg_orders.Rd | 1
taxize-0.3.0/taxize/man/class2tree.Rd | 68 -
taxize-0.3.0/taxize/man/classification.Rd | 87 -
taxize-0.3.0/taxize/man/col_children.Rd | 53 -
taxize-0.3.0/taxize/man/col_classification-deprecated.Rd | 59 -
taxize-0.3.0/taxize/man/col_downstream.Rd | 61 -
taxize-0.3.0/taxize/man/col_search.Rd | 40
taxize-0.3.0/taxize/man/comm2sci.Rd | 24
taxize-0.3.0/taxize/man/downstream.Rd | 38
taxize-0.3.0/taxize/man/eol_dataobjects.Rd | 21
taxize-0.3.0/taxize/man/eol_hierarchy-deprecated.Rd | 20
taxize-0.3.0/taxize/man/eol_invasive.Rd | 82 -
taxize-0.3.0/taxize/man/eol_pages.Rd | 80 -
taxize-0.3.0/taxize/man/eol_ping.Rd | 1
taxize-0.3.0/taxize/man/eol_search.Rd | 44
taxize-0.3.0/taxize/man/gbif_name_usage.Rd |only
taxize-0.3.0/taxize/man/gbif_parse.Rd | 8
taxize-0.3.0/taxize/man/get_colid.Rd | 23
taxize-0.3.0/taxize/man/get_eolid.Rd | 39
taxize-0.3.0/taxize/man/get_gbifid.Rd | 32
taxize-0.3.0/taxize/man/get_genes-deprecated.Rd |only
taxize-0.3.0/taxize/man/get_genes_avail-deprecated.Rd |only
taxize-0.3.0/taxize/man/get_ids.Rd | 46
taxize-0.3.0/taxize/man/get_seqs-deprecated.Rd |only
taxize-0.3.0/taxize/man/get_tpsid.Rd | 38
taxize-0.3.0/taxize/man/get_tsn.Rd | 52 -
taxize-0.3.0/taxize/man/get_uid.Rd | 33
taxize-0.3.0/taxize/man/getacceptednamesfromtsn.Rd | 17
taxize-0.3.0/taxize/man/getanymatchcount.Rd | 17
taxize-0.3.0/taxize/man/getcommentdetailfromtsn.Rd | 14
taxize-0.3.0/taxize/man/getcommonnamesfromtsn.Rd | 13
taxize-0.3.0/taxize/man/getcoremetadatafromtsn.Rd | 14
taxize-0.3.0/taxize/man/getcoveragefromtsn.Rd | 13
taxize-0.3.0/taxize/man/getcredibilityratingfromtsn.Rd | 14
taxize-0.3.0/taxize/man/getcredibilityratings.Rd | 1
taxize-0.3.0/taxize/man/getcurrencyfromtsn.Rd | 13
taxize-0.3.0/taxize/man/getdatedatafromtsn.Rd | 13
taxize-0.3.0/taxize/man/getdescription.Rd | 1
taxize-0.3.0/taxize/man/getexpertsfromtsn.Rd | 13
taxize-0.3.0/taxize/man/getfullhierarchyfromtsn.Rd | 16
taxize-0.3.0/taxize/man/getfullrecordfromlsid.Rd | 24
taxize-0.3.0/taxize/man/getfullrecordfromtsn.Rd | 15
taxize-0.3.0/taxize/man/getgeographicdivisionsfromtsn.Rd | 14
taxize-0.3.0/taxize/man/getgeographicvalues.Rd | 1
taxize-0.3.0/taxize/man/getglobalspeciescompletenessfromtsn.Rd | 14
taxize-0.3.0/taxize/man/gethierarchydownfromtsn.Rd | 17
taxize-0.3.0/taxize/man/gethierarchyupfromtsn.Rd | 15
taxize-0.3.0/taxize/man/getitisterms.Rd | 15
taxize-0.3.0/taxize/man/getitistermsfromcommonname.Rd | 15
taxize-0.3.0/taxize/man/getitistermsfromscientificname.Rd | 15
taxize-0.3.0/taxize/man/getjurisdictionaloriginfromtsn.Rd | 17
taxize-0.3.0/taxize/man/getjurisdictionoriginvalues.Rd | 3
taxize-0.3.0/taxize/man/getjurisdictionvalues.Rd | 3
taxize-0.3.0/taxize/man/getkey.Rd | 11
taxize-0.3.0/taxize/man/getkingdomnamefromtsn.Rd | 15
taxize-0.3.0/taxize/man/getkingdomnames.Rd | 1
taxize-0.3.0/taxize/man/getlastchangedate.Rd | 1
taxize-0.3.0/taxize/man/getlsidfromtsn.Rd | 16
taxize-0.3.0/taxize/man/getothersourcesfromtsn.Rd | 14
taxize-0.3.0/taxize/man/getparenttsnfromtsn.Rd | 13
taxize-0.3.0/taxize/man/getpublicationsfromtsn.Rd | 17
taxize-0.3.0/taxize/man/getranknames.Rd | 5
taxize-0.3.0/taxize/man/getrecordfromlsid.Rd | 22
taxize-0.3.0/taxize/man/getreviewyearfromtsn.Rd | 13
taxize-0.3.0/taxize/man/getscientificnamefromtsn.Rd | 19
taxize-0.3.0/taxize/man/getsynonymnamesfromtsn.Rd | 16
taxize-0.3.0/taxize/man/gettaxonauthorshipfromtsn.Rd | 14
taxize-0.3.0/taxize/man/gettaxonomicranknamefromtsn.Rd | 17
taxize-0.3.0/taxize/man/gettaxonomicusagefromtsn.Rd | 17
taxize-0.3.0/taxize/man/gettsnbyvernacularlanguage.Rd | 17
taxize-0.3.0/taxize/man/gettsnfromlsid.Rd | 19
taxize-0.3.0/taxize/man/getunacceptabilityreasonfromtsn.Rd | 14
taxize-0.3.0/taxize/man/getvernacularlanguages.Rd | 4
taxize-0.3.0/taxize/man/gisd_isinvasive.Rd | 43
taxize-0.3.0/taxize/man/gni_details.Rd | 16
taxize-0.3.0/taxize/man/gni_parse.Rd | 10
taxize-0.3.0/taxize/man/gni_search.Rd | 59 -
taxize-0.3.0/taxize/man/gnr_datasources.Rd | 5
taxize-0.3.0/taxize/man/gnr_resolve.Rd | 76 -
taxize-0.3.0/taxize/man/ifelsedata.Rd | 4
taxize-0.3.0/taxize/man/iplant_resolve.Rd |only
taxize-0.3.0/taxize/man/ipni_search.Rd |only
taxize-0.3.0/taxize/man/itis_acceptname.Rd | 10
taxize-0.3.0/taxize/man/itis_downstream.Rd | 22
taxize-0.3.0/taxize/man/itis_getrecord.Rd | 13
taxize-0.3.0/taxize/man/itis_hierarchy.Rd | 19
taxize-0.3.0/taxize/man/itis_kingdomnames.Rd | 6
taxize-0.3.0/taxize/man/itis_lsid.Rd | 12
taxize-0.3.0/taxize/man/itis_name-deprecated.Rd |only
taxize-0.3.0/taxize/man/itis_native.Rd | 11
taxize-0.3.0/taxize/man/itis_ping.Rd | 4
taxize-0.3.0/taxize/man/itis_refs.Rd | 7
taxize-0.3.0/taxize/man/itis_searchcommon.Rd | 16
taxize-0.3.0/taxize/man/itis_taxrank.Rd | 16
taxize-0.3.0/taxize/man/itis_terms.Rd | 18
taxize-0.3.0/taxize/man/iucn_getname.Rd | 8
taxize-0.3.0/taxize/man/iucn_status.Rd | 6
taxize-0.3.0/taxize/man/iucn_summary.Rd | 35
taxize-0.3.0/taxize/man/names_list.Rd | 11
taxize-0.3.0/taxize/man/ncbi_getbyid.Rd | 20
taxize-0.3.0/taxize/man/ncbi_getbyname.Rd | 32
taxize-0.3.0/taxize/man/ncbi_search.Rd | 44
taxize-0.3.0/taxize/man/phylomatic_format.Rd | 18
taxize-0.3.0/taxize/man/phylomatic_tree.Rd | 40
taxize-0.3.0/taxize/man/plantGenusNames.Rd | 1
taxize-0.3.0/taxize/man/plantNames.Rd | 1
taxize-0.3.0/taxize/man/plantminer.Rd | 20
taxize-0.3.0/taxize/man/rank_ref.Rd | 1
taxize-0.3.0/taxize/man/rankagg.Rd | 13
taxize-0.3.0/taxize/man/resolve.Rd |only
taxize-0.3.0/taxize/man/sci2comm.Rd | 40
taxize-0.3.0/taxize/man/scrapenames.Rd | 70 -
taxize-0.3.0/taxize/man/searchbycommonname.Rd | 15
taxize-0.3.0/taxize/man/searchbycommonnamebeginswith.Rd | 15
taxize-0.3.0/taxize/man/searchbycommonnameendswith.Rd | 15
taxize-0.3.0/taxize/man/searchbyscientificname.Rd | 15
taxize-0.3.0/taxize/man/searchforanymatch.Rd | 14
taxize-0.3.0/taxize/man/searchforanymatchpaged.Rd | 24
taxize-0.3.0/taxize/man/synonyms.Rd | 26
taxize-0.3.0/taxize/man/tax_agg.Rd | 32
taxize-0.3.0/taxize/man/tax_name.Rd | 34
taxize-0.3.0/taxize/man/tax_rank.Rd | 39
taxize-0.3.0/taxize/man/taxize-deprecated.Rd | 51 -
taxize-0.3.0/taxize/man/taxize-package.Rd | 52 -
taxize-0.3.0/taxize/man/taxize_capwords.Rd | 11
taxize-0.3.0/taxize/man/taxize_ldfast.Rd | 9
taxize-0.3.0/taxize/man/theplantlist.Rd | 4
taxize-0.3.0/taxize/man/tnrs.Rd | 56 -
taxize-0.3.0/taxize/man/tnrs_sources.Rd | 8
taxize-0.3.0/taxize/man/tp_acceptednames-deprecated.Rd |only
taxize-0.3.0/taxize/man/tp_accnames.Rd | 17
taxize-0.3.0/taxize/man/tp_classification-deprecated.Rd | 8
taxize-0.3.0/taxize/man/tp_dist.Rd | 15
taxize-0.3.0/taxize/man/tp_namedistributions-deprecated.Rd |only
taxize-0.3.0/taxize/man/tp_namereferences-deprecated.Rd |only
taxize-0.3.0/taxize/man/tp_refs.Rd | 21
taxize-0.3.0/taxize/man/tp_search.Rd | 30
taxize-0.3.0/taxize/man/tp_summary.Rd | 17
taxize-0.3.0/taxize/man/tp_synonyms.Rd | 9
taxize-0.3.0/taxize/man/tpl_families.Rd | 11
taxize-0.3.0/taxize/man/tpl_get.Rd | 23
taxize-0.3.0/taxize/man/tpl_search-deprecated.Rd | 33
taxize-0.3.0/taxize/man/ubio_classification.Rd | 33
taxize-0.3.0/taxize/man/ubio_classification_search.Rd | 29
taxize-0.3.0/taxize/man/ubio_id.Rd | 23
taxize-0.3.0/taxize/man/ubio_search.Rd | 36
taxize-0.3.0/taxize/man/ubio_synonyms.Rd | 21
taxize-0.3.0/taxize/man/vascan_search.Rd | 25
taxize-0.3.0/taxize/tests/testthat/test-class2tree.R | 4
taxize-0.3.0/taxize/tests/testthat/test-col_downstream.R | 4
taxize-0.3.0/taxize/tests/testthat/test-eol_dataobjects.R | 7
taxize-0.3.0/taxize/tests/testthat/test-get_ids.R | 20
taxize-0.3.0/taxize/tests/testthat/test-get_tsn.R | 2
taxize-0.3.0/taxize/tests/testthat/test-gnr_resolve.R | 7
taxize-0.3.0/taxize/tests/testthat/test-itis_getrecord.R | 6
taxize-0.3.0/taxize/tests/testthat/test-itis_hierarchy.R | 4
taxize-0.3.0/taxize/tests/testthat/test-itis_kingdomnames.R | 6
taxize-0.3.0/taxize/tests/testthat/test-itis_lsid.R | 8
taxize-0.3.0/taxize/tests/testthat/test-itis_native.R | 8
taxize-0.3.0/taxize/tests/testthat/test-itis_refs.R | 4
taxize-0.3.0/taxize/tests/testthat/test-itis_terms.R | 6
taxize-0.3.0/taxize/tests/testthat/test-sci2comm.R | 4
taxize-0.3.0/taxize/tests/testthat/test-tax_agg.R | 2
taxize-0.3.0/taxize/tests/testthat/test-tp_accnames.R | 10
taxize-0.3.0/taxize/tests/testthat/test-tp_refs.R | 2
taxize-0.3.0/taxize/tests/testthat/test-tp_summary.R | 4
taxize-0.3.0/taxize/tests/testthat/test-tp_synonyms.R | 2
taxize-0.3.0/taxize/tests/testthat/test-ubio_id.R | 6
taxize-0.3.0/taxize/tests/testthat/test-ubio_namebank.R | 7
taxize-0.3.0/taxize/tests/testthat/test-ubio_search.R | 8
taxize-0.3.0/taxize/vignettes/taxize_infotable.Rmd | 1
taxize-0.3.0/taxize/vignettes/taxize_vignette.Rmd | 176 +--
274 files changed, 3479 insertions(+), 3385 deletions(-)
Title: Resource Selection (Probability) Functions for Use-Availability
Data
Diff between ResourceSelection versions 0.2-3 dated 2013-07-11 and 0.2-4 dated 2014-05-20
More information about ResourceSelection at CRAN
Description: Resource Selection (Probability) Functions for
use-availability wildlife data as described in
Lele and Keim (2006, Ecology 87, 3021--3028),
and Lele (2009, J. Wildlife Management 73, 122--127).
Author: Subhash R. Lele, Jonah L. Keim, Peter Solymos
Maintainer: Peter Solymos
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/kdepairs.default.R | 2 +-
R/rsf.fit.R | 2 +-
R/simulateUseAvail.R | 3 ++-
inst/ChangeLog | 4 ++++
man/rsf.Rd | 5 +++--
7 files changed, 21 insertions(+), 15 deletions(-)
Permanent link
Title: Solves the generalized Fused Lasso
Diff between FusedLasso versions 1.0.5 dated 2014-05-17 and 1.0.6 dated 2014-05-20
Description: Solves the Fused Lasso for linear models. The methodology is implemented for regular linear models as well as for binomial endpoints.
Author: Holger Hoefling
Maintainer: Holger Hoefling
DESCRIPTION | 6 +++---
MD5 | 4 ++--
src/FusedLasso.cc | 2 +-
3 files changed, 6 insertions(+), 6 deletions(-)