Tue, 20 May 2014

New package zCompositions with initial version 1.0.0
Package: zCompositions
Type: Package
Title: Replacement of zeros and nondetects in compositional data sets
Version: 1.0.0
Date: 2014-05
Author: Javier Palarea-Albaladejo and Josep Antoni Martin-Fernandez
Maintainer: Javier Palarea-Albaladejo
Depends: R (>= 2.14.0), MASS, NADA, truncnorm
ByteCompile: yes
Description: zCompositions provides principled methods to deal with zeros and left-censoring in compositional data sets
License: GPL (>= 2)
Repository: CRAN
Packaged: 2014-05-20 15:01:04 UTC; Japal
NeedsCompilation: no
Date/Publication: 2014-05-20 18:30:47

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New package GLSME with initial version 1.0
Package: GLSME
Type: Package
Title: Generalized Least Squares with Measurement Error
Version: 1.0
Date: 2014-05-19
Author: Krzysztof Bartoszek
Maintainer: Krzysztof Bartoszek
Description: Performs linear regression with correlated predictors, responses and correlated measurement errors in predictors and responses, correcting for biased caused by these.
Depends: R(>= 2.9.1), mvtnorm, corpcor
Suggests: ape, mvSLOUCH, ouch
License: GPL (>= 2) | file LICENCE
LazyLoad: yes
Collate: GLSME.R
Packaged: 2014-05-20 15:46:41 UTC; kbart
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-20 18:30:43

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Package sjPlot updated to version 1.4.2 with previous version 1.4.1 dated 2014-04-17

Title: sjPlot - data visualization for statistics in social science
Description: Collection of several plotting / table output functions for visualizing data and utility functions.
Author: Daniel Lüdecke
Maintainer: Daniel Luedecke

Diff between sjPlot versions 1.4.1 dated 2014-04-17 and 1.4.2 dated 2014-05-20

 DESCRIPTION                  |    8 
 MD5                          |  142 +++----
 NAMESPACE                    |    2 
 NEWS                         |  599 +++++++++++++++--------------
 R/sjImportSPSS.R             |  702 +++++++++++++++++-----------------
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Package mkin updated to version 0.9-28 with previous version 0.9-27 dated 2014-05-10

Title: Routines for fitting kinetic models with one or more state variables to chemical degradation data
Description: Calculation routines based on the FOCUS Kinetics Report (2006). Includes a function for conveniently defining differential equation models, model solution based on eigenvalues if possible or using numerical solvers and a choice of the optimisation methods made available by the FME package (default is a Levenberg-Marquardt variant). Please note that no warranty is implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph], Katrin Lindenberger [ctb], René Lehmann [ctb], Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke

Diff between mkin versions 0.9-27 dated 2014-05-10 and 0.9-28 dated 2014-05-20

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 vignettes/references.bib |   35 +++++++----
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More information about mkin at CRAN
Permanent link

Package xpose4specific (with last version 4.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2010-11-30 4.3.2
2010-10-23 4.3.0

Permanent link
Package xpose4classic (with last version 4.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2010-11-30 4.3.2
2010-10-23 4.3.0

Permanent link
Package xpose4generic (with last version 4.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2011-09-19 4.3.3
2010-11-30 4.3.2
2010-10-23 4.3.0

Permanent link
Package xpose4data (with last version 4.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-08-13 4.4.1
2012-10-17 4.4.0
2012-04-19 4.3.5
2010-11-30 4.3.2
2010-10-23 4.3.0

Permanent link
Package xpose4 updated to version 4.5.0 with previous version 4.4.1 dated 2013-08-13

Title: Xpose 4
Description: Xpose is collection of functions to be used as a model building aid for non-linear mixed effects (population) analysis using NONMEM. It facilitates data set checkout, exploration and visualization, model diagnostics, candidate covariate identification and model comparison.
Author: Andrew Hooker , E. Niclas Jonsson , Mats Karlsson
Maintainer: Andrew Hooker

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Package prefmod updated to version 0.8-32 with previous version 0.8-31 dated 2012-05-14

Title: Utilities to fit paired comparison models for preferences
Description: Generates design matrix for analysing real paired comparisons and derived paired comparison data (Likert type items/ratings or rankings) using a loglinear approach. Fits loglinear Bradley-Terry model (LLBT) exploiting an eliminate feature. Computes pattern models for paired comparisons, rankings, and ratings. Some treatment of missing values (MCAR and MNAR). Fits latent class (mixture) models for paired comparison, rating and ranking patterns using a non-parametric ML approach.
Author: Reinhold Hatzinger [aut], Marco Johannes Maier [cre]
Maintainer: Marco Johannes Maier

Diff between prefmod versions 0.8-31 dated 2012-05-14 and 0.8-32 dated 2014-05-20

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Permanent link

Package extracat updated to version 1.7-0 with previous version 1.6-4 dated 2013-12-12

Title: Categorical Data Analysis and Visualization
Description: Categorical Data Analysis and Visualization
Author: Alexander Pilhoefer
Maintainer: Alexander Pilhoefer

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Package taxize updated to version 0.3.0 with previous version 0.2.2 dated 2014-03-02

Title: Taxonomic information from around the web.
Description: Taxonomic information from around the web. This package interacts with a suite of web APIs for taxonomic tasks, such as verifying species names, getting taxonomic hierarchies, and verifying name spelling.
Author: Scott Chamberlain [aut, cre], Eduard Szoecs [aut], Carl Boettiger [aut], Karthik Ram [aut], Ignasi Bartomeus [aut], John Baumgartner [aut]
Maintainer: Scott Chamberlain

Diff between taxize versions 0.2.2 dated 2014-03-02 and 0.3.0 dated 2014-05-20

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 taxize-0.3.0/taxize/MD5                                                            |  507 +++++-----
 taxize-0.3.0/taxize/NAMESPACE                                                      |   12 
 taxize-0.3.0/taxize/NEWS                                                           |   60 -
 taxize-0.3.0/taxize/R/apg_lookup.R                                                 |    1 
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 taxize-0.3.0/taxize/R/col_search.R                                                 |    2 
 taxize-0.3.0/taxize/R/comm2sci.R                                                   |    1 
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 taxize-0.3.0/taxize/R/downstream.R                                                 |    6 
 taxize-0.3.0/taxize/R/eol_dataobjects.R                                            |    3 
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 taxize-0.3.0/taxize/R/eol_pages.R                                                  |   26 
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 taxize-0.3.0/taxize/R/gbif_parse.R                                                 |    5 
 taxize-0.3.0/taxize/R/get_colid.R                                                  |   40 
 taxize-0.3.0/taxize/R/get_eolid.R                                                  |   80 +
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 taxize-0.3.0/taxize/R/get_ids.R                                                    |   12 
 taxize-0.3.0/taxize/R/get_tpsid.R                                                  |   27 
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 taxize-0.3.0/taxize/R/get_uid.R                                                    |   10 
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 taxize-0.3.0/taxize/R/gni_parse.R                                                  |    2 
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 taxize-0.3.0/taxize/R/tax_agg.R                                                    |    5 
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 taxize-0.3.0/taxize/R/taxize_capwords.r                                            |    3 
 taxize-0.3.0/taxize/R/tnrs.R                                                       |    9 
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 taxize-0.3.0/taxize/R/tp_dist.R                                                    |   20 
 taxize-0.3.0/taxize/R/tp_refs.R                                                    |   65 -
 taxize-0.3.0/taxize/R/tp_search.R                                                  |    6 
 taxize-0.3.0/taxize/R/tp_summary.R                                                 |   45 
 taxize-0.3.0/taxize/R/tp_synonyms.R                                                |   31 
 taxize-0.3.0/taxize/R/tpl_search.r                                                 |   25 
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 taxize-0.3.0/taxize/R/vascan_search.r                                              |    4 
 taxize-0.3.0/taxize/R/zzz.R                                                        |  120 ++
 taxize-0.3.0/taxize/README.md                                                      |   59 -
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 taxize-0.3.0/taxize/man/getrecordfromlsid.Rd                                       |   22 
 taxize-0.3.0/taxize/man/getreviewyearfromtsn.Rd                                    |   13 
 taxize-0.3.0/taxize/man/getscientificnamefromtsn.Rd                                |   19 
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 taxize-0.3.0/taxize/man/gettaxonauthorshipfromtsn.Rd                               |   14 
 taxize-0.3.0/taxize/man/gettaxonomicranknamefromtsn.Rd                             |   17 
 taxize-0.3.0/taxize/man/gettaxonomicusagefromtsn.Rd                                |   17 
 taxize-0.3.0/taxize/man/gettsnbyvernacularlanguage.Rd                              |   17 
 taxize-0.3.0/taxize/man/gettsnfromlsid.Rd                                          |   19 
 taxize-0.3.0/taxize/man/getunacceptabilityreasonfromtsn.Rd                         |   14 
 taxize-0.3.0/taxize/man/getvernacularlanguages.Rd                                  |    4 
 taxize-0.3.0/taxize/man/gisd_isinvasive.Rd                                         |   43 
 taxize-0.3.0/taxize/man/gni_details.Rd                                             |   16 
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 taxize-0.3.0/taxize/man/itis_acceptname.Rd                                         |   10 
 taxize-0.3.0/taxize/man/itis_downstream.Rd                                         |   22 
 taxize-0.3.0/taxize/man/itis_getrecord.Rd                                          |   13 
 taxize-0.3.0/taxize/man/itis_hierarchy.Rd                                          |   19 
 taxize-0.3.0/taxize/man/itis_kingdomnames.Rd                                       |    6 
 taxize-0.3.0/taxize/man/itis_lsid.Rd                                               |   12 
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 taxize-0.3.0/taxize/man/itis_native.Rd                                             |   11 
 taxize-0.3.0/taxize/man/itis_ping.Rd                                               |    4 
 taxize-0.3.0/taxize/man/itis_refs.Rd                                               |    7 
 taxize-0.3.0/taxize/man/itis_searchcommon.Rd                                       |   16 
 taxize-0.3.0/taxize/man/itis_taxrank.Rd                                            |   16 
 taxize-0.3.0/taxize/man/itis_terms.Rd                                              |   18 
 taxize-0.3.0/taxize/man/iucn_getname.Rd                                            |    8 
 taxize-0.3.0/taxize/man/iucn_status.Rd                                             |    6 
 taxize-0.3.0/taxize/man/iucn_summary.Rd                                            |   35 
 taxize-0.3.0/taxize/man/names_list.Rd                                              |   11 
 taxize-0.3.0/taxize/man/ncbi_getbyid.Rd                                            |   20 
 taxize-0.3.0/taxize/man/ncbi_getbyname.Rd                                          |   32 
 taxize-0.3.0/taxize/man/ncbi_search.Rd                                             |   44 
 taxize-0.3.0/taxize/man/phylomatic_format.Rd                                       |   18 
 taxize-0.3.0/taxize/man/phylomatic_tree.Rd                                         |   40 
 taxize-0.3.0/taxize/man/plantGenusNames.Rd                                         |    1 
 taxize-0.3.0/taxize/man/plantNames.Rd                                              |    1 
 taxize-0.3.0/taxize/man/plantminer.Rd                                              |   20 
 taxize-0.3.0/taxize/man/rank_ref.Rd                                                |    1 
 taxize-0.3.0/taxize/man/rankagg.Rd                                                 |   13 
 taxize-0.3.0/taxize/man/resolve.Rd                                                 |only
 taxize-0.3.0/taxize/man/sci2comm.Rd                                                |   40 
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 taxize-0.3.0/taxize/man/searchbycommonname.Rd                                      |   15 
 taxize-0.3.0/taxize/man/searchbycommonnamebeginswith.Rd                            |   15 
 taxize-0.3.0/taxize/man/searchbycommonnameendswith.Rd                              |   15 
 taxize-0.3.0/taxize/man/searchbyscientificname.Rd                                  |   15 
 taxize-0.3.0/taxize/man/searchforanymatch.Rd                                       |   14 
 taxize-0.3.0/taxize/man/searchforanymatchpaged.Rd                                  |   24 
 taxize-0.3.0/taxize/man/synonyms.Rd                                                |   26 
 taxize-0.3.0/taxize/man/tax_agg.Rd                                                 |   32 
 taxize-0.3.0/taxize/man/tax_name.Rd                                                |   34 
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 taxize-0.3.0/taxize/man/taxize_capwords.Rd                                         |   11 
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 taxize-0.3.0/taxize/man/tnrs_sources.Rd                                            |    8 
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 taxize-0.3.0/taxize/man/tp_refs.Rd                                                 |   21 
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 taxize-0.3.0/taxize/man/tp_summary.Rd                                              |   17 
 taxize-0.3.0/taxize/man/tp_synonyms.Rd                                             |    9 
 taxize-0.3.0/taxize/man/tpl_families.Rd                                            |   11 
 taxize-0.3.0/taxize/man/tpl_get.Rd                                                 |   23 
 taxize-0.3.0/taxize/man/tpl_search-deprecated.Rd                                   |   33 
 taxize-0.3.0/taxize/man/ubio_classification.Rd                                     |   33 
 taxize-0.3.0/taxize/man/ubio_classification_search.Rd                              |   29 
 taxize-0.3.0/taxize/man/ubio_id.Rd                                                 |   23 
 taxize-0.3.0/taxize/man/ubio_search.Rd                                             |   36 
 taxize-0.3.0/taxize/man/ubio_synonyms.Rd                                           |   21 
 taxize-0.3.0/taxize/man/vascan_search.Rd                                           |   25 
 taxize-0.3.0/taxize/tests/testthat/test-class2tree.R                               |    4 
 taxize-0.3.0/taxize/tests/testthat/test-col_downstream.R                           |    4 
 taxize-0.3.0/taxize/tests/testthat/test-eol_dataobjects.R                          |    7 
 taxize-0.3.0/taxize/tests/testthat/test-get_ids.R                                  |   20 
 taxize-0.3.0/taxize/tests/testthat/test-get_tsn.R                                  |    2 
 taxize-0.3.0/taxize/tests/testthat/test-gnr_resolve.R                              |    7 
 taxize-0.3.0/taxize/tests/testthat/test-itis_getrecord.R                           |    6 
 taxize-0.3.0/taxize/tests/testthat/test-itis_hierarchy.R                           |    4 
 taxize-0.3.0/taxize/tests/testthat/test-itis_kingdomnames.R                        |    6 
 taxize-0.3.0/taxize/tests/testthat/test-itis_lsid.R                                |    8 
 taxize-0.3.0/taxize/tests/testthat/test-itis_native.R                              |    8 
 taxize-0.3.0/taxize/tests/testthat/test-itis_refs.R                                |    4 
 taxize-0.3.0/taxize/tests/testthat/test-itis_terms.R                               |    6 
 taxize-0.3.0/taxize/tests/testthat/test-sci2comm.R                                 |    4 
 taxize-0.3.0/taxize/tests/testthat/test-tax_agg.R                                  |    2 
 taxize-0.3.0/taxize/tests/testthat/test-tp_accnames.R                              |   10 
 taxize-0.3.0/taxize/tests/testthat/test-tp_refs.R                                  |    2 
 taxize-0.3.0/taxize/tests/testthat/test-tp_summary.R                               |    4 
 taxize-0.3.0/taxize/tests/testthat/test-tp_synonyms.R                              |    2 
 taxize-0.3.0/taxize/tests/testthat/test-ubio_id.R                                  |    6 
 taxize-0.3.0/taxize/tests/testthat/test-ubio_namebank.R                            |    7 
 taxize-0.3.0/taxize/tests/testthat/test-ubio_search.R                              |    8 
 taxize-0.3.0/taxize/vignettes/taxize_infotable.Rmd                                 |    1 
 taxize-0.3.0/taxize/vignettes/taxize_vignette.Rmd                                  |  176 +--
 274 files changed, 3479 insertions(+), 3385 deletions(-)

More information about taxize at CRAN
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Package ResourceSelection updated to version 0.2-4 with previous version 0.2-3 dated 2013-07-11

Title: Resource Selection (Probability) Functions for Use-Availability Data
Description: Resource Selection (Probability) Functions for use-availability wildlife data as described in Lele and Keim (2006, Ecology 87, 3021--3028), and Lele (2009, J. Wildlife Management 73, 122--127).
Author: Subhash R. Lele, Jonah L. Keim, Peter Solymos
Maintainer: Peter Solymos

Diff between ResourceSelection versions 0.2-3 dated 2013-07-11 and 0.2-4 dated 2014-05-20

 DESCRIPTION          |    8 ++++----
 MD5                  |   12 ++++++------
 R/kdepairs.default.R |    2 +-
 R/rsf.fit.R          |    2 +-
 R/simulateUseAvail.R |    3 ++-
 inst/ChangeLog       |    4 ++++
 man/rsf.Rd           |    5 +++--
 7 files changed, 21 insertions(+), 15 deletions(-)

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Package FusedLasso updated to version 1.0.6 with previous version 1.0.5 dated 2014-05-17

Title: Solves the generalized Fused Lasso
Description: Solves the Fused Lasso for linear models. The methodology is implemented for regular linear models as well as for binomial endpoints.
Author: Holger Hoefling
Maintainer: Holger Hoefling

Diff between FusedLasso versions 1.0.5 dated 2014-05-17 and 1.0.6 dated 2014-05-20

 DESCRIPTION       |    6 +++---
 MD5               |    4 ++--
 src/FusedLasso.cc |    2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)

More information about FusedLasso at CRAN
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New package gramEvol with initial version 1.0-1
Package: gramEvol
Type: Package
Title: Grammatical Evolution For R
Version: 1.0-1
Date: 2014-05-20
Author: Farzad Noorian, Anthony Mihirana de Silva
Maintainer: Farzad Noorian
Description: Implementation of Context Free Grammar and Grammatical Evolution for R
License: GPL (>= 2)
Packaged: 2014-05-20 02:06:15 UTC; farzad
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-20 07:33:30

More information about gramEvol at CRAN
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New package DFIT with initial version 1.0
Package: DFIT
Title: Differential Functioning of Items and Tests (DFIT) framework analyses.
Version: 1.0
Date: 2014-05-18
Author: Victor H. Cervantes
Maintainer: Victor H. Cervantes
Imports: simex, mvtnorm, ggplot2
Description: A set of functions to perform Raju, van der Linden and Fleer's (1995) Differential Item and Item Functioning (DFIT) analyses. It includes functions to use the Monte Carlo Item Parameter Replication (IPR) approach (Oshima, Raju, & Nanda, 2006) for obtaining the associated statistical significance tests cut-off points. They may also be used for a priori and post-hoc power calculations.
License: GPL (>= 2)
Encoding: latin1
Packaged: 2014-05-20 01:45:06 UTC; herulor
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-05-20 07:33:23

More information about DFIT at CRAN
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