Title: Tools for the qdap package.
Diff between qdapTools versions 0.2.0 dated 2014-05-16 and 1.0.0 dated 2014-05-23
Description: This package is a collection of tools associated with the qdap
package that may be useful outside of the context of text analysis.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Kirill Muller [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
DESCRIPTION | 9 +
MD5 | 58 +++++++-----
NAMESPACE | 18 +++
NEWS | 40 ++++++++
R/hash.R | 155 +++++++++++++++++++++++---------
R/hash2.R |only
R/id.R | 13 +-
R/list2df.R | 49 ++++++++--
R/lookup.R | 256 ++++++++++++++++++++++++++++++-----------------------
R/lookup_e.R |only
R/mtabulate.R | 4
R/pad.R | 1
R/repo2github.R | 13 +-
R/url_dl.R | 2
R/v_outer.R | 86 +++++++++--------
inst/CITATION | 4
man/Deprecated.Rd |only
man/hash.Rd | 69 +++++++++-----
man/id.Rd | 5 -
man/list2df.Rd | 33 +++++-
man/lookup.Rd | 46 +++++----
man/lookup_e.Rd |only
man/mtabulate.Rd | 4
man/pad.Rd | 1
man/repo2github.Rd | 13 +-
man/url_dl.Rd | 2
man/v_outer.Rd | 38 +++++--
tests |only
28 files changed, 618 insertions(+), 301 deletions(-)
Title: VAR modelling: estimation, testing, and prediction
Diff between VAR.etp versions 0.2 dated 2014-04-16 and 0.3 dated 2014-05-23
Description: Estimation, Hypothesis Testing, Prediction for Stationary Vector Autoregressive Models
Author: Jae. H. Kim
Maintainer: Jae H. Kim
VAR.etp-0.2/VAR.etp/man/VAR.LRtest.Rd |only
VAR.etp-0.2/VAR.etp/man/VAR.Waldtest.Rd |only
VAR.etp-0.3/VAR.etp/DESCRIPTION | 8 ++--
VAR.etp-0.3/VAR.etp/MD5 | 54 ++++++++++++++++++++++-------
VAR.etp-0.3/VAR.etp/NAMESPACE | 2 -
VAR.etp-0.3/VAR.etp/R/ARM.R |only
VAR.etp-0.3/VAR.etp/R/ARM.order.R |only
VAR.etp-0.3/VAR.etp/R/ARM2.Fore.R |only
VAR.etp-0.3/VAR.etp/R/ARM2.R |only
VAR.etp-0.3/VAR.etp/R/ARM2.order.R |only
VAR.etp-0.3/VAR.etp/R/ARM3.Fore.R |only
VAR.etp-0.3/VAR.etp/R/LSM.R |only
VAR.etp-0.3/VAR.etp/R/Mammen.R |only
VAR.etp-0.3/VAR.etp/R/OLS.AR.R |only
VAR.etp-0.3/VAR.etp/R/PR.Fore.R |only
VAR.etp-0.3/VAR.etp/R/PR.IARM.R |only
VAR.etp-0.3/VAR.etp/R/PR.order.R |only
VAR.etp-0.3/VAR.etp/R/PR2.R |only
VAR.etp-0.3/VAR.etp/R/PR3.R |only
VAR.etp-0.3/VAR.etp/R/RESID.R |only
VAR.etp-0.3/VAR.etp/R/Rmatrix.R |only
VAR.etp-0.3/VAR.etp/R/Shaman.Stine.R |only
VAR.etp-0.3/VAR.etp/R/Stine.R |only
VAR.etp-0.3/VAR.etp/R/VAR.LR.R |only
VAR.etp-0.3/VAR.etp/R/VAR.Pope.R | 4 +-
VAR.etp-0.3/VAR.etp/R/VAR.Wald.R |only
VAR.etp-0.3/VAR.etp/R/VAR.mseh.R | 2 -
VAR.etp-0.3/VAR.etp/R/VARB.Pope.R | 2 -
VAR.etp-0.3/VAR.etp/R/adjust.R |only
VAR.etp-0.3/VAR.etp/data/data1.rda |only
VAR.etp-0.3/VAR.etp/man/PR.Fore.Rd |only
VAR.etp-0.3/VAR.etp/man/PR.IARM.Rd |only
VAR.etp-0.3/VAR.etp/man/PR.order.Rd |only
VAR.etp-0.3/VAR.etp/man/Rmatrix.Rd |only
VAR.etp-0.3/VAR.etp/man/VAR.Boot.Rd | 2 -
VAR.etp-0.3/VAR.etp/man/VAR.FOR.Rd | 2 -
VAR.etp-0.3/VAR.etp/man/VAR.LR.Rd |only
VAR.etp-0.3/VAR.etp/man/VAR.Pope.Rd |only
VAR.etp-0.3/VAR.etp/man/VAR.Rest.Rd | 4 +-
VAR.etp-0.3/VAR.etp/man/VAR.Wald.Rd |only
VAR.etp-0.3/VAR.etp/man/VAR.est.Rd | 2 -
VAR.etp-0.3/VAR.etp/man/VAR.etp-package.Rd | 6 +--
VAR.etp-0.3/VAR.etp/man/VAR.select.Rd | 2 -
VAR.etp-0.3/VAR.etp/man/data1.Rd |only
44 files changed, 59 insertions(+), 31 deletions(-)
Title: Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Diff between nanop versions 2.0-2 dated 2013-10-25 and 2.0-3 dated 2014-05-23
Description: This software package implements functions to simulate spherical, ellipsoid and cubic polyatomic nanoparticles with arbitrary crystal structures and to calculate the associated pair-distribution function and X-ray/neutron total-scattering signals. It also provides a target function that can be used for simultaneous fitting of small- and wide-angle total scattering data in real and reciprocal spaces. The target function can be generated either as a sum of weighted residuals for individual datasets or as a vector of residuals suitable for optimization using multi-criteria algorithms (e.g. Pareto methods).
Author: Anton Gagin, Katharine Mullen
Maintainer: Anton Gagin
DESCRIPTION | 11
MD5 | 17
NEWS | 5
R/calcQDepPDF.R | 6
R/calcTotalScatt.R | 22
R/simPart.R | 1453 ++++++++++++++++++++++++++---------------------------
R/termRip.R |only
man/calcPDF.Rd | 8
man/rss.Rd | 2
src/pdf_debye.c | 22
10 files changed, 781 insertions(+), 765 deletions(-)
Title: LaTeX Wrappers for R Users
Diff between lazyWeave versions 2.2.0 dated 2012-09-11 and 2.2.5 dated 2014-05-23
Description: Provides the functionality to write LaTeX code from within R without having to learn LaTeX.
Author: Benjamin Nutter
Maintainer: Benjamin Nutter
DESCRIPTION | 12
MD5 | 147 ++++-----
NAMESPACE | 14
NEWS | 42 +-
R/catconttable.R | 76 +++--
R/cattable.R | 423 ++++++++++++++--------------
R/conttable.R | 358 ++++++++++++-----------
R/is.significant.R | 18 -
R/lazy.build.R | 222 +++++++-------
R/lazy.citation.R | 62 ++--
R/lazy.counter.R | 146 ++++-----
R/lazy.figure.R | 4
R/lazy.file.end.R | 20 -
R/lazy.file.start.R | 13
R/lazy.footnote.R | 56 +--
R/lazy.insert.code.R | 20 -
R/lazy.label.R | 32 +-
R/lazy.landscape.R | 16 -
R/lazy.link.R | 56 +--
R/lazy.list.R | 216 +++++++-------
R/lazy.page.break.R | 16 -
R/lazy.page.number.R | 22 -
R/lazy.ref.R | 46 +--
R/lazy.table.R | 9
R/lazy.text.R | 152 +++++-----
R/lazy.text.format.R | 44 +-
R/lazy.toc.R | 76 ++---
R/lazy.verbatim.end.R | 18 -
R/lazy.verbatim.start.R | 28 -
R/lazy.write.R | 90 ++---
R/mantel.test.R | 182 ++++++------
R/map.size.R | 50 +--
R/print.ctable.R | 100 +++---
R/pvalue.QHS.R | 24 -
R/setHtmlOptions.R | 22 -
R/split_ctable.R |only
R/univ.R | 168 +++++------
R/write.ctable.r | 706 ++++++++++++++++++++---------------------------
R/write.univ.R | 36 +-
R/zzz.R | 30 +
README | 12
man/ComparisonTable.Rd | 393 +++++++++++++-------------
man/Delivery.rd | 68 ++--
man/Scout.rd | 48 +--
man/WritePrintCtable.Rd | 155 +++++-----
man/is.significant.Rd | 86 ++---
man/lazy.build.Rd | 150 ++++-----
man/lazy.citation.Rd | 68 ++--
man/lazy.counter.Rd | 140 ++++-----
man/lazy.figure.Rd | 148 ++++-----
man/lazy.file.end.Rd | 36 +-
man/lazy.file.start.Rd | 114 +++----
man/lazy.footnote.Rd | 78 ++---
man/lazy.insert.code.Rd | 58 +--
man/lazy.landscape.Rd | 54 +--
man/lazy.link.Rd | 56 +--
man/lazy.list.Rd | 122 ++++----
man/lazy.matrix.Rd | 138 ++++-----
man/lazy.page.break.Rd | 62 ++--
man/lazy.page.number.Rd | 58 +--
man/lazy.ref.Rd | 58 +--
man/lazy.section.Rd | 120 +++----
man/lazy.table.Rd | 308 ++++++++++----------
man/lazy.text.Rd | 148 ++++-----
man/lazy.text.format.Rd | 84 ++---
man/lazy.toc.Rd | 79 ++---
man/lazy.verbatim.Rd | 62 ++--
man/lazy.write.Rd | 50 +--
man/lazyWeave-package.Rd | 434 ++++++++++++++--------------
man/mantel.test.Rd | 124 ++++----
man/map.size.Rd | 92 +++---
man/pvalue.QHS.Rd | 78 ++---
man/setHtmlOptions.Rd | 84 ++---
man/univ.Rd | 182 ++++++------
man/write.univ.rd | 178 +++++------
75 files changed, 3948 insertions(+), 3949 deletions(-)
Title: Clustering and alignment of a functional dataset
Diff between fdakma versions 1.0 dated 2013-07-31 and 1.1 dated 2014-05-23
Description: The package fdakma jointly performs clustering and alignment of a multidimensional or unidimensional functional dataset.
Author: Mirco Patriarca, Laura Sangalli, Piercesare Secchi, Simone Vantini, Valeria Vitelli, Alice Parodi.
Maintainer: Alice Parodi
DESCRIPTION | 12
MD5 | 23 -
R/fdakma-internal.R |only
R/kma.R | 764 ++++++++++++++++++++++++++----------------------
R/kma.compare.R | 70 ++--
R/kma.show.results.R | 746 +++++++++++++++++++++++++---------------------
R/kma.similarity.R | 126 +++----
data/kma.data.rda |binary
man/fdakma-package.Rd | 6
man/kma.Rd | 17 -
man/kma.compare.Rd | 16 -
man/kma.show.results.Rd | 21 -
man/kma.similarity.Rd | 14
13 files changed, 980 insertions(+), 835 deletions(-)
Title: Performing continuous-time microsimulation
Diff between MicSim versions 1.0.3 dated 2014-04-23 and 1.0.4 dated 2014-05-23
Description: The package performs continuous-time microsimulation for population projections.
Author: Sabine Zinn
Maintainer: Sabine Zinn
DESCRIPTION | 8 ++---
MD5 | 16 ++++++-----
NAMESPACE | 2 -
R/convertToWide.r |only
R/micSim.r | 10 ++-----
inst/NEWS.Rd | 7 +++++
man/MicSim-package.Rd | 4 +-
man/convertToWideFormat.Rd |only
man/micSim.Rd | 62 ++++++++++++++++++++++-----------------------
man/micSimParallel.Rd | 53 +++++++++++++++++++-------------------
10 files changed, 85 insertions(+), 77 deletions(-)
Title: Functional Data Analysis
Diff between fda versions 2.4.0 dated 2013-10-18 and 2.4.3 dated 2014-05-23
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer. They were
ported from earlier versions in Matlab and S-PLUS. An
introduction appears in Ramsay, J. O., Hooker, Giles, and
Graves, Spencer (2009) Functional Data Analysis with R and
Matlab (Springer). The package includes data sets and script
files working many examples including all but one of the 76
figures in this latter book. Matlab versions of the code and
sample analyses are no longer distributed through CRAN, as they
were when the book was published. For those, ftp from
http://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/
There you find a set of .zip files containing the functions and
sample analyses, as well as two .txt files giving instructions for
installation and some additional information.
The changes from Version 2.4.1 are fixes of bugs in density.fd and
removal of functions create.polynomial.basis, polynompen, and
polynomial. These were deleted because the monomial basis
does the same thing and because there were errors in the code.
Author: J. O. Ramsay
Maintainer: J. O. Ramsay
fda-2.4.0/fda/R/create.polynomial.basis.R |only
fda-2.4.0/fda/R/polynom.R |only
fda-2.4.0/fda/R/polynompen.R |only
fda-2.4.0/fda/man/create.polynomial.basis.Rd |only
fda-2.4.3/fda/DESCRIPTION | 16
fda-2.4.3/fda/MD5 | 107 +--
fda-2.4.3/fda/NAMESPACE | 1
fda-2.4.3/fda/R/basisfd.R | 12
fda-2.4.3/fda/R/density.fd.R | 556 +++++++++----------
fda-2.4.3/fda/R/fdPar.R | 3
fda-2.4.3/fda/R/getbasismatrix.R | 9
fda-2.4.3/fda/R/getbasispenalty.R | 5
fda-2.4.3/fda/R/linmod.R | 4
fda-2.4.3/fda/R/pda.fd.R | 740 +++++++++++++-------------
fda-2.4.3/fda/R/smooth.pos.R | 49 +
fda-2.4.3/fda/R/stepit.R | 168 +++--
fda-2.4.3/fda/R/symsolve.R | 1
fda-2.4.3/fda/R/zerobasis.R |only
fda-2.4.3/fda/data/CanadianWeather.rda |binary
fda-2.4.3/fda/data/MontrealTemp.rda |binary
fda-2.4.3/fda/data/ReginaPrecip.rda |binary
fda-2.4.3/fda/data/StatSciChinese.rda |binary
fda-2.4.3/fda/data/daily.rda |binary
fda-2.4.3/fda/data/dateAccessories.rda |binary
fda-2.4.3/fda/data/gait.rda |binary
fda-2.4.3/fda/data/growth.rda |binary
fda-2.4.3/fda/data/handwrit.rda |binary
fda-2.4.3/fda/data/infantGrowth.rda |binary
fda-2.4.3/fda/data/landmark.reg.expData.rda |binary
fda-2.4.3/fda/data/lip.rda |binary
fda-2.4.3/fda/data/melanoma.rda |binary
fda-2.4.3/fda/data/nondurables.rda |binary
fda-2.4.3/fda/data/onechild.rda |binary
fda-2.4.3/fda/data/pinch.rda |binary
fda-2.4.3/fda/data/pinchraw.rda |binary
fda-2.4.3/fda/data/refinery.rda |binary
fda-2.4.3/fda/data/seabird.rda |binary
fda-2.4.3/fda/inst/scripts/afda-ch03.R | 16
fda-2.4.3/fda/man/as.POSIXct1970.Rd | 111 +--
fda-2.4.3/fda/man/basisfd.Rd | 392 ++++++-------
fda-2.4.3/fda/man/create.basis.Rd | 14
fda-2.4.3/fda/man/create.bspline.basis.Rd | 1
fda-2.4.3/fda/man/create.constant.basis.Rd | 107 +--
fda-2.4.3/fda/man/create.exponential.basis.Rd | 249 ++++----
fda-2.4.3/fda/man/create.fourier.basis.Rd | 1
fda-2.4.3/fda/man/create.monomial.basis.Rd | 289 +++++-----
fda-2.4.3/fda/man/create.polygonal.basis.Rd | 257 ++++-----
fda-2.4.3/fda/man/create.power.basis.Rd | 269 ++++-----
fda-2.4.3/fda/man/density.fd.Rd | 2
fda-2.4.3/fda/man/eigen.pda.rd | 185 +++---
fda-2.4.3/fda/man/intensity.fd.Rd | 3
fda-2.4.3/fda/man/landmarkreg.Rd | 5
fda-2.4.3/fda/man/monfn.Rd | 5
fda-2.4.3/fda/man/pda.fd.Rd | 6
fda-2.4.3/fda/man/pda.overlay.Rd | 8
fda-2.4.3/fda/man/plot.pda.fd.rd | 211 +++----
fda-2.4.3/fda/man/seabird.Rd | 26
57 files changed, 1942 insertions(+), 1886 deletions(-)
Title: Calculate normalising constants for Bayesian time series models.
Diff between tsbridge versions 1.0 dated 2013-10-15 and 1.1 dated 2014-05-23
Description: The tsbridge package contains a collection of R functions that can be used to estimate normalising constants using the bridge sampler of Meng and Wong (1996). The functions can be applied to calculate posterior model probabilities for a variety of time series Bayesian models, where parameters are estimated using BUGS, and models themselves are created using the tsbugs package.
Author: Guy J. Abel and Jackie S. T. Wong
Maintainer: Guy J. Abel
DESCRIPTION | 12 +-
MD5 | 18 +--
NAMESPACE | 1
R/h.fit.R | 3
R/tsbridge-internal.R | 251 +++++++++++++++++++++++-------------------------
demo/cv_bma.R | 2
man/bridge.Rd | 2
man/q1q2l.Rd | 2
man/tsbridge-package.Rd | 4
man/y.fit.Rd | 3
10 files changed, 149 insertions(+), 149 deletions(-)
Title: Sparklines and graphical tables for tex and html
Diff between sparkTable versions 0.9.6 dated 2012-09-27 and 0.10.0 dated 2014-05-23
Description: Create Sparklines and graphical tables for documents and websites
Author: Alexander Kowarik, Bernhard Meindl, Matthias Templ
Maintainer: Alexander Kowarik
DESCRIPTION | 18 ++++----
MD5 | 37 ++++++++++------
NAMESPACE | 17 ++++---
R/auxFunctions.r | 1
R/exports.r | 42 +++++++++++-------
R/methods.r | 90 ++++++++++++++++++++++++----------------
R/runShinyApp.R |only
R/shiny_sparkTable.R |only
README |only
inst/shinystuff |only
man/checkerplot.Rd | 24 ++++++----
man/getParameter.Rd | 3 -
man/newGeoTable.Rd | 6 +-
man/newSparkBar.Rd | 3 -
man/plotGeoTable.Rd | 24 +++++++---
man/plotSparkTable.Rd | 12 ++++-
man/runShinyApp-methods.Rd |only
man/setParameter.Rd | 3 -
man/shiny_sparkTable-methods.Rd |only
man/summaryST.Rd | 12 ++++-
20 files changed, 182 insertions(+), 110 deletions(-)
Title: Implementation of the 3D alpha-shape for the reconstruction of
3D sets from a point cloud
Diff between alphashape3d versions 1.0-4 dated 2014-01-11 and 1.1 dated 2014-05-23
Description: The package alphashape3d presents the implementation in R of the alpha-shape of a finite set of points in the three-dimensional space. This geometric structure generalizes the convex hull and allows to recover the shape of non-convex and even non-connected sets in 3D, given a random sample of points taken into it. Besides the computation of the alpha-shape, the package alphashape3d provides users with functions to compute the volume of the alpha-shape, identify the connected components and facilitate the three-dimensional graphical visualization of the estimated set.
Author: Thomas Lafarge, Beatriz Pateiro-Lopez
Maintainer: Beatriz Pateiro-Lopez
alphashape3d-1.0-4/alphashape3d/inst/CITATION |only
alphashape3d-1.0-4/alphashape3d/src/alphashape3d.f |only
alphashape3d-1.1/alphashape3d/DESCRIPTION | 9
alphashape3d-1.1/alphashape3d/MD5 | 31
alphashape3d-1.1/alphashape3d/NAMESPACE | 4
alphashape3d-1.1/alphashape3d/R/ashape3d.R | 833 +++++++-------
alphashape3d-1.1/alphashape3d/R/components_ashape3d.R | 172 +-
alphashape3d-1.1/alphashape3d/R/inashape3d.R | 74 -
alphashape3d-1.1/alphashape3d/R/intersectiontriangle.R | 18
alphashape3d-1.1/alphashape3d/R/plot.ashape3d.R | 186 +--
alphashape3d-1.1/alphashape3d/R/surfaceNormals.R | 114 +
alphashape3d-1.1/alphashape3d/R/volume_ashape3d.R | 143 +-
alphashape3d-1.1/alphashape3d/build |only
alphashape3d-1.1/alphashape3d/inst/doc |only
alphashape3d-1.1/alphashape3d/man/alphashape3d-package.Rd | 4
alphashape3d-1.1/alphashape3d/man/surfaceNormals.Rd | 7
alphashape3d-1.1/alphashape3d/src/alphashape3d.c |only
alphashape3d-1.1/alphashape3d/vignettes |only
18 files changed, 854 insertions(+), 741 deletions(-)
Title: Extreme Bounds Analysis (EBA)
Diff between ExtremeBounds versions 0.1.3 dated 2014-03-21 and 0.1.4.1 dated 2014-05-23
Description: An implementation of Extreme Bounds Analysis (EBA), a global sensitivity analysis that examines the robustness of determinants in regression models. The package supports both Leamer's and Sala-i-Martin's versions of EBA, and allows users to customize all aspects of the analysis.
Author: Marek Hlavac
Maintainer: Marek Hlavac
DESCRIPTION | 9 +-
MD5 | 32 ++++----
NAMESPACE | 1
R/ExtremeBounds-internal.R | 161 +++++++++++++++++++++++++++++++++----------
R/ExtremeBounds.R | 8 +-
inst/CITATION | 4 -
inst/ChangeLog | 5 +
inst/doc/ExtremeBounds.Rtex | 139 ++++++++++++++++++++-----------------
inst/doc/ExtremeBounds.pdf |binary
man/ExtremeBounds.Rd | 2
man/eba.Rd | 27 ++++---
man/hist.eba.Rd | 19 +++--
man/print.eba.Rd | 15 ++--
vignettes/ExtremeBounds.Rtex | 139 ++++++++++++++++++++-----------------
vignettes/ExtremeBounds.bib | 41 +++++++---
vignettes/naive.pdf |binary
vignettes/sophisticated.pdf |binary
17 files changed, 384 insertions(+), 218 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-20 0.98-20140220
2012-09-23 0.98-20120923
2012-07-14 0.98-20120713
2012-02-24 0.98-20120224
2011-09-28 0.98-20110927
2009-10-28 0.95
Title: Neural Networks in R using the Stuttgart Neural Network
Simulator (SNNS)
Diff between RSNNS versions 0.4-4 dated 2013-12-16 and 0.4-5 dated 2014-05-23
Description: The Stuttgart Neural Network Simulator (SNNS) is a library
containing many standard implementations of neural networks. This
package wraps the SNNS functionality to make it available from
within R. Using the RSNNS low-level interface, all of the
algorithmic functionality and flexibility of SNNS can be accessed.
Furthermore, the package contains a convenient high-level
interface, so that the most common neural network topologies and
learning algorithms integrate seamlessly into R.
Author: Christoph Bergmeir and José M. Benítez
Maintainer: Christoph Bergmeir
RSNNS-0.4-4/RSNNS/man/SnnsRObject$createNet.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$createPatSet.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$extractNetInfo.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$extractPatterns.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$genericPredictCurrPatSet.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getAllHiddenUnits.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getAllInputUnits.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getAllOutputUnits.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getAllUnits.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getAllUnitsTType.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getCompleteWeightMatrix.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getInfoHeader.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getSiteDefinitions.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getTypeDefinitions.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getUnitDefinitions.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getUnitsByName.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$getWeightMatrix.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$initializeNet.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$predictCurrPatSet.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$resetRSNNS.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$setTTypeUnitsActFunc.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$setUnitDefaults.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$somPredictComponentMaps.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$somPredictCurrPatSetWinners.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$somPredictCurrPatSetWinnersSpanTree.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$train.Rd |only
RSNNS-0.4-4/RSNNS/man/SnnsRObject$whereAreResults.Rd |only
RSNNS-0.4-5/RSNNS/ChangeLog | 17
RSNNS-0.4-5/RSNNS/DESCRIPTION | 22
RSNNS-0.4-5/RSNNS/MD5 | 248 +++++-----
RSNNS-0.4-5/RSNNS/NAMESPACE | 107 +---
RSNNS-0.4-5/RSNNS/R/RSNNS-package.R | 91 ++-
RSNNS-0.4-5/RSNNS/R/SnnsRObjectFactory.R | 41 -
RSNNS-0.4-5/RSNNS/R/SnnsR_createNets.R | 30 -
RSNNS-0.4-5/RSNNS/R/SnnsR_extractNetInfo.R | 76 +--
RSNNS-0.4-5/RSNNS/R/SnnsR_masked.R | 10
RSNNS-0.4-5/RSNNS/R/SnnsR_parser.R | 5
RSNNS-0.4-5/RSNNS/R/SnnsR_patterns.R | 44 +
RSNNS-0.4-5/RSNNS/R/SnnsR_train.R | 97 +++
RSNNS-0.4-5/RSNNS/R/SnnsR_util.R | 5
RSNNS-0.4-5/RSNNS/R/art1.R | 2
RSNNS-0.4-5/RSNNS/R/art2.R | 3
RSNNS-0.4-5/RSNNS/R/artmap.R | 3
RSNNS-0.4-5/RSNNS/R/assoz.R | 3
RSNNS-0.4-5/RSNNS/R/dlvq.R | 3
RSNNS-0.4-5/RSNNS/R/elman.R | 37 -
RSNNS-0.4-5/RSNNS/R/jordan.R | 69 +-
RSNNS-0.4-5/RSNNS/R/mlp.R | 89 +--
RSNNS-0.4-5/RSNNS/R/normalizeData.R | 15
RSNNS-0.4-5/RSNNS/R/rbf.R | 3
RSNNS-0.4-5/RSNNS/R/rbfDDA.R | 3
RSNNS-0.4-5/RSNNS/R/reg_class.R | 29 -
RSNNS-0.4-5/RSNNS/R/rsnns.R | 32 -
RSNNS-0.4-5/RSNNS/R/som.R | 3
RSNNS-0.4-5/RSNNS/demo/00Index | 3
RSNNS-0.4-5/RSNNS/demo/eight_elmanSnnsR.R | 2
RSNNS-0.4-5/RSNNS/demo/iris.R | 48 -
RSNNS-0.4-5/RSNNS/demo/mlp_irisSnnsR.R | 111 ++--
RSNNS-0.4-5/RSNNS/demo/mlp_iris_tuning.R | 2
RSNNS-0.4-5/RSNNS/demo/pruning_iris.R |only
RSNNS-0.4-5/RSNNS/demo/pruning_irisSnnsR.R |only
RSNNS-0.4-5/RSNNS/demo/rbf_irisSnnsR.R | 131 ++---
RSNNS-0.4-5/RSNNS/man/RSNNS-package.Rd | 216 +++++---
RSNNS-0.4-5/RSNNS/man/SnnsR-class.Rd | 86 ++-
RSNNS-0.4-5/RSNNS/man/SnnsRObject-createNet.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-createPatSet.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-extractNetInfo.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-extractPatterns.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-genericPredictCurrPatSet.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getAllHiddenUnits.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getAllInputUnits.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getAllOutputUnits.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getAllUnits.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getAllUnitsTType.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getCompleteWeightMatrix.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getInfoHeader.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getSiteDefinitions.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getTypeDefinitions.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getUnitDefinitions.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getUnitsByName.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-getWeightMatrix.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-initializeNet.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-predictCurrPatSet.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-resetRSNNS.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-setTTypeUnitsActFunc.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-setUnitDefaults.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-somPredictComponentMaps.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-somPredictCurrPatSetWinners.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-somPredictCurrPatSetWinnersSpanTree.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-train.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObject-whereAreResults.Rd |only
RSNNS-0.4-5/RSNNS/man/SnnsRObjectFactory.Rd | 27 -
RSNNS-0.4-5/RSNNS/man/SnnsRObjectMethodCaller.Rd | 77 +--
RSNNS-0.4-5/RSNNS/man/analyzeClassification.Rd | 107 ++--
RSNNS-0.4-5/RSNNS/man/art1.Rd | 210 +++++---
RSNNS-0.4-5/RSNNS/man/art2.Rd | 132 +++--
RSNNS-0.4-5/RSNNS/man/artmap.Rd | 195 +++++--
RSNNS-0.4-5/RSNNS/man/assoz.Rd | 113 +++-
RSNNS-0.4-5/RSNNS/man/confusionMatrix.Rd | 31 -
RSNNS-0.4-5/RSNNS/man/decodeClassLabels.Rd | 54 +-
RSNNS-0.4-5/RSNNS/man/denormalizeData.Rd | 40 +
RSNNS-0.4-5/RSNNS/man/dlvq.Rd | 139 +++--
RSNNS-0.4-5/RSNNS/man/elman.Rd | 140 +++--
RSNNS-0.4-5/RSNNS/man/encodeClassLabels.Rd | 37 +
RSNNS-0.4-5/RSNNS/man/exportToSnnsNetFile.Rd | 20
RSNNS-0.4-5/RSNNS/man/extractNetInfo.Rd | 34 -
RSNNS-0.4-5/RSNNS/man/getNormParameters.Rd | 28 -
RSNNS-0.4-5/RSNNS/man/getSnnsRDefine.Rd | 31 -
RSNNS-0.4-5/RSNNS/man/getSnnsRFunctionTable.Rd | 19
RSNNS-0.4-5/RSNNS/man/inputColumns.Rd | 14
RSNNS-0.4-5/RSNNS/man/jordan.Rd | 172 ++++--
RSNNS-0.4-5/RSNNS/man/matrixToActMapList.Rd | 39 +
RSNNS-0.4-5/RSNNS/man/mlp.Rd | 161 ++++--
RSNNS-0.4-5/RSNNS/man/normTrainingAndTestSet.Rd | 58 +-
RSNNS-0.4-5/RSNNS/man/normalizeData.Rd | 53 +-
RSNNS-0.4-5/RSNNS/man/outputColumns.Rd | 14
RSNNS-0.4-5/RSNNS/man/plotActMap.Rd | 17
RSNNS-0.4-5/RSNNS/man/plotIterativeError.Rd | 27 -
RSNNS-0.4-5/RSNNS/man/plotROC.Rd | 25 -
RSNNS-0.4-5/RSNNS/man/plotRegressionError.Rd | 23
RSNNS-0.4-5/RSNNS/man/predict.rsnns.Rd | 22
RSNNS-0.4-5/RSNNS/man/print.rsnns.Rd | 15
RSNNS-0.4-5/RSNNS/man/rbf.Rd | 166 ++++--
RSNNS-0.4-5/RSNNS/man/rbfDDA.Rd | 109 ++--
RSNNS-0.4-5/RSNNS/man/readPatFile.Rd | 19
RSNNS-0.4-5/RSNNS/man/readResFile.Rd | 18
RSNNS-0.4-5/RSNNS/man/resolveSnnsRDefine.Rd | 29 -
RSNNS-0.4-5/RSNNS/man/rsnnsObjectFactory.Rd | 98 ++-
RSNNS-0.4-5/RSNNS/man/savePatFile.Rd | 20
RSNNS-0.4-5/RSNNS/man/setSnnsRSeedValue.Rd | 15
RSNNS-0.4-5/RSNNS/man/snnsData.Rd | 22
RSNNS-0.4-5/RSNNS/man/som.Rd | 194 ++++---
RSNNS-0.4-5/RSNNS/man/splitForTrainingAndTest.Rd | 40 +
RSNNS-0.4-5/RSNNS/man/summary.rsnns.Rd | 38 +
RSNNS-0.4-5/RSNNS/man/toNumericClassLabels.Rd | 21
RSNNS-0.4-5/RSNNS/man/train.Rd | 51 +-
RSNNS-0.4-5/RSNNS/man/vectorToActMap.Rd | 36 +
RSNNS-0.4-5/RSNNS/man/weightMatrix.Rd | 26 -
RSNNS-0.4-5/RSNNS/src/SnnsCLib.cpp | 23
RSNNS-0.4-5/RSNNS/src/SnnsCLib.h | 3
RSNNS-0.4-5/RSNNS/src/SnnsCLibWrapper.cpp | 100 +++-
RSNNS-0.4-5/RSNNS/src/bn_JordElm.cpp | 1
RSNNS-0.4-5/RSNNS/src/bn_art1.cpp | 2
RSNNS-0.4-5/RSNNS/src/bn_art2.cpp | 1
RSNNS-0.4-5/RSNNS/src/bn_artmap.cpp | 1
RSNNS-0.4-5/RSNNS/src/bn_assoz.cpp | 2
RSNNS-0.4-5/RSNNS/src/bn_kohonen.cpp | 1
RSNNS-0.4-5/RSNNS/src/cc_mac.h | 1
RSNNS-0.4-5/RSNNS/src/init_f.cpp | 3
RSNNS-0.4-5/RSNNS/src/kr_io.cpp | 186 ++++---
RSNNS-0.4-5/RSNNS/src/kr_pat_parse.cpp | 8
RSNNS-0.4-5/RSNNS/src/tacoma_learn.cpp | 4
RSNNS-0.4-5/RSNNS/tests/testAllDemos.R | 2
153 files changed, 3242 insertions(+), 1758 deletions(-)
Title: Organic Mass Spectrometry
Diff between OrgMassSpecR versions 0.4-3 dated 2014-03-30 and 0.4-4 dated 2014-05-23
Description: Organic/biological mass spectrometry data analysis.
Author: Nathan G. Dodder, with code contributions from Katharine M. Mullen.
Maintainer: Nathan Dodder
DESCRIPTION | 12 ++++++------
MD5 | 10 +++++-----
R/ConvertPeptide.R | 2 ++
build/vignette.rds |binary
data/example.sequence.rda |binary
inst/NEWS.Rd | 10 ++++++++++
6 files changed, 23 insertions(+), 11 deletions(-)