Title: Retrieve data sets from the HealthData.gov data API
Diff between rHealthDataGov versions 1.0.0 dated 2014-04-14 and 1.0.1 dated 2014-06-01
More information about rHealthDataGov at CRAN
Description: An R interface for the HealthData.gov data API. For each data resource, you can filter results (server-side) to select subsets of data.
Author: Erin LeDell
Maintainer: Erin LeDell
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 6 ++++++
R/fetch_heathdata.R | 3 +--
man/fetch_healthdata.Rd | 3 +++
man/rHealthDataGov-package.Rd | 6 +++---
6 files changed, 22 insertions(+), 14 deletions(-)
Permanent link
Title: NCBI2R-An R package to navigate and annotate genes and SNPs
Diff between NCBI2R versions 1.4.5 dated 2014-01-07 and 1.4.6 dated 2014-06-01
Description: NCBI2R is an R package that annotates lists of SNPs and/or
genes, with current information from NCBI, including LD
information. Functions are provided that with one command will
provide annotation of the results from genome wide association
studies to provide a broader context of their meaning. Other
functions enable comparisons between a user's GWA results, and
candidate snp/gene lists that are created from keywords, such
as specific diseases, phenotypes or gene ontology terms.
Commands are simple to follow and designed to work with R
objects to integrate into existing workflows. The output
produces text fields and weblinks to more information for items
such as: gene descriptions, nucleotide positions, OMIM,
pathways, phenotypes, and lists of interacting and neighboring
genes. Annotation can then be used in R for further analysis,
or the objects can be customized for use in spreadsheet
programs or web browsers. The NCBI2R package was designed to
allow those performing genome analysis to produce output that
could easily be understood by a person not familiar with R.
Please see the website at http://NCBI2R.wordpress.com for more
information. The internet is required for almost all of these
functions. Use the function PrintNCBI2RInfo() for information.
Author: Scott Melville
Maintainer: Scott Melville
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
man/GetUniSTSFromName.rd | 10 ++++++----
man/GetUniSTSInfo.rd | 9 +++++----
man/GetUniSTSSpecies.rd | 10 ++++++----
5 files changed, 25 insertions(+), 20 deletions(-)
Title: Mposterior: R package for Robust and Scalable Bayes via a Median
of Subset Posterior Measures
Diff between Mposterior versions 0.1.1 dated 2014-06-01 and 0.1.2 dated 2014-06-01
Description: Mposterior package provides a general framework for estimating a
median of subset posterior measures (M-posterior). Each subset posterior measure
is represented as a matrix of posterior samples; rows represent the atoms and
columns index the dimensions. All subset measures are represented as list of
matrices; length of the list equals the number of subsets (or machines). The
distance between subset posterior measures and M-posterior is measured using the RBF kernel.
M-posterior is represented as a weighted combination of empirical measures based on
subsets measures. These weights are estimated using Weiszfeld algorithm implemented
in this package.
Author: Sanvesh Srivastava
Maintainer: Sanvesh Srivastava
DESCRIPTION | 8 ++++----
MD5 | 7 ++++---
NEWS | 13 ++++++++++---
src/Makevars.win |only
src/weiszfeldIterations.cpp | 6 ++++--
5 files changed, 22 insertions(+), 12 deletions(-)
Title: Simulation and estimation of log-GARCH models
Diff between lgarch versions 0.2 dated 2014-04-29 and 0.3 dated 2014-06-01
Description: Simulation and estimation of univariate log-GARCH models, and of the multivariate CCC-log-GARCH(1,1) model. The main functions of the package are lgarchSim, mlgarchSim, lgarch and mlgarch. The first two simulates from a univariate and a multivariate log-GARCH model, respectively, whereas the latter two estimates a univariate and multivariate log-GARCH model, respectively. In addition, a collection of methods can be applied to objects of both the 'lgarch' and 'mlgarch' types: coef, fitted, logLik, print, residuals and vcov.
Author: Genaro Sucarrat
Maintainer: Genaro Sucarrat
lgarch-0.2/lgarch/R/rss.lgarch.R |only
lgarch-0.3/lgarch/DESCRIPTION | 10 ++---
lgarch-0.3/lgarch/MD5 | 56 ++++++++++++++++++------------
lgarch-0.3/lgarch/NAMESPACE | 8 +++-
lgarch-0.3/lgarch/R/coef.mlgarch.R |only
lgarch-0.3/lgarch/R/fitted.lgarch.R | 3 +
lgarch-0.3/lgarch/R/fitted.mlgarch.R |only
lgarch-0.3/lgarch/R/gdiff.R |only
lgarch-0.3/lgarch/R/glag.R | 21 ++++++-----
lgarch-0.3/lgarch/R/lgarch-internal.R | 21 ++++++++---
lgarch-0.3/lgarch/R/lgarch.R | 26 +++++++++----
lgarch-0.3/lgarch/R/lgarchRecursion1.R | 2 -
lgarch-0.3/lgarch/R/logLik.lgarch.R | 4 +-
lgarch-0.3/lgarch/R/logLik.mlgarch.R |only
lgarch-0.3/lgarch/R/mlgarch.R |only
lgarch-0.3/lgarch/R/mlgarchObjective.R |only
lgarch-0.3/lgarch/R/mlgarchRecursion1.R |only
lgarch-0.3/lgarch/R/mlgarchSim.R | 12 +++---
lgarch-0.3/lgarch/R/print.lgarch.R | 13 +++---
lgarch-0.3/lgarch/R/print.mlgarch.R |only
lgarch-0.3/lgarch/R/residuals.mlgarch.R |only
lgarch-0.3/lgarch/R/rss.R |only
lgarch-0.3/lgarch/R/vcov.lgarch.R | 6 +--
lgarch-0.3/lgarch/R/vcov.mlgarch.R |only
lgarch-0.3/lgarch/man/coef.lgarch.Rd | 29 ++++++++-------
lgarch-0.3/lgarch/man/coef.mlgarch.Rd |only
lgarch-0.3/lgarch/man/gdiff.Rd |only
lgarch-0.3/lgarch/man/glag.Rd | 27 +++++++++-----
lgarch-0.3/lgarch/man/lgarch-package.Rd | 43 ++++++++++++++++-------
lgarch-0.3/lgarch/man/lgarch.Rd | 31 ++++++++--------
lgarch-0.3/lgarch/man/lgarchObjective.Rd | 13 ++++--
lgarch-0.3/lgarch/man/lgarchSim.Rd | 17 +++++----
lgarch-0.3/lgarch/man/mlgarch.Rd |only
lgarch-0.3/lgarch/man/mlgarchObjective.Rd |only
lgarch-0.3/lgarch/man/mlgarchSim.Rd | 49 +++++++++++++++-----------
lgarch-0.3/lgarch/man/rmnorm.Rd | 50 +++++++++++++-------------
lgarch-0.3/lgarch/src/lgarch.cpp | 45 +++++++++++++++++++++++-
37 files changed, 310 insertions(+), 176 deletions(-)
Title: ELT - A package to build Experience Life Tables
Diff between ELT versions 1.1 dated 2014-03-16 and 1.2 dated 2014-06-01
Description: The package is meant to help actuaries to build experience life tables. It contains functions to calculate exposure and number of deaths, smoothing following four different methods, and validation following three criteria.
Author: Julien Tomas, Frederic Planchet, Wassim Youssef
Maintainer: Wassim Youssef
DESCRIPTION | 8 ++---
MD5 | 30 ++++++++++----------
R/S03.R | 9 ++----
R/S04.R | 10 +++---
R/S05.R | 8 ++---
R/S06.R | 9 ++----
R/S07.R | 2 -
R/S08.R | 40 +++++++++++----------------
R/S09.R | 8 ++---
R/S10.R | 8 ++---
R/S11.R | 12 ++++----
R/S12.R | 2 -
R/SGraphics.R | 77 ++++++++++++++++++++++++++---------------------------
man/ELT-package.Rd | 6 ++--
man/FctMethod1.Rd | 4 +-
man/FctMethod2.Rd | 4 +-
16 files changed, 112 insertions(+), 125 deletions(-)
Title: Group Lasso Penalized Learning Using A Unified BMD Algorithm
Diff between gglasso versions 1.1 dated 2013-02-24 and 1.2 dated 2014-06-01
Description: This package implements a unified algorithm, blockwise-majorization-decent (BMD), for efficiently computing the solution paths of the group-lasso penalized least squares, logistic regression, Huberized SVM and squared SVM.
Author: Yi Yang
Maintainer: Yi Yang
ChangeLog | 5 +
DESCRIPTION | 11 +--
MD5 | 18 ++---
R/cv.R | 16 +---
R/gglasso.R | 11 +--
R/model.R | 16 ++--
R/tools.R | 22 +++++-
R/utilities.R | 22 ------
man/gglasso.Rd | 4 -
src/gglasso.f90 | 192 +++++++++++++++++++++++++++++++-------------------------
10 files changed, 166 insertions(+), 151 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-29 2.6.0
2013-05-07 2.5.0
2013-03-27 2.4.0
2013-02-14 2.3.5
2012-11-28 2.2.0
2012-09-27 2.1.0
2012-03-27 2.0.1
2012-03-06 2.0
Title: Create "Table 1" to describe baseline characteristics
Diff between tableone versions 0.5.0 dated 2014-04-23 and 0.6.0 dated 2014-06-01
Description: This package creates "Table 1", i.e., description of baseline
patient characteristics, which is essential in every medical research. This
package provides functions to create such summaries for continuous and
categorical variables, optionally with subgroup comparisons. The package
was inspired by and based on descriptive statistics functions in Deducer,
a Java-based GUI package by Ian Fellows. This package does not require GUI
or Java, and intended for command-line users.
Author: Kazuki Yoshida, Justin Bohn.
Maintainer: Kazuki Yoshida
DESCRIPTION | 8 +-
MD5 | 34 ++++++------
NAMESPACE | 2
NEWS | 13 ++++
R/CreateTableOne.R | 7 ++
R/ShowRegTable.R | 11 ++-
R/tableone-package.R | 11 ++-
man/CreateCatTable.Rd | 77 ++++++++-------------------
man/CreateContTable.Rd | 98 +++++++++-------------------------
man/CreateTableOne.Rd | 133 +++++++++++++----------------------------------
man/ShowRegTable.Rd | 31 ++++------
man/print.CatTable.Rd | 74 +++++++-------------------
man/print.ContTable.Rd | 63 ++++++----------------
man/print.TableOne.Rd | 83 ++++++++---------------------
man/summary.CatTable.Rd | 25 ++------
man/summary.ContTable.Rd | 25 ++------
man/summary.TableOne.Rd | 27 +++------
man/tableone-package.Rd | 41 +++++---------
18 files changed, 262 insertions(+), 501 deletions(-)
Title: An individual-based population genetic simulation environment
Diff between rmetasim versions 2.0.3 dated 2014-05-27 and 2.0.4 dated 2014-06-01
Description: An interface between R and the metasim simulation engine.
Facilitates the use of the metasim engine to build and
run individual based population genetics simulations. The
simulation environment is documented in: Allan
Strand. Metasim 1.0: an individual-based environment for
simulating population genetics of complex population
dynamics. Mol. Ecol. Notes, 2:373-376, 2002. (Please
contact Allan Strand with comments, bug reports, etc).
This version represents a significant alteration of
function names that hopefully increases consistency and
reduces the chances of collisions with other packages
naming conventions. For a spatially-explicit, but slower, package
with a similar interface, see kernelPop
Author: Allan Strand
Maintainer: Allan Strand
CHANGELOG | 3 +++
DESCRIPTION | 6 +++---
MD5 | 16 ++++++++--------
src/Democlass.cc | 8 +++++++-
src/Democlass.h | 2 +-
src/Landscape.cc | 8 +++++++-
src/Makevars | 6 ++----
src/RandLib.cc | 5 ++++-
src/rmetasim.cc | 2 +-
9 files changed, 36 insertions(+), 20 deletions(-)
Title: Parallel nonparametric kernel smoothing methods for mixed data
types
Diff between npRmpi versions 0.50-1.1 dated 2014-01-01 and 0.60-0 dated 2014-06-01
Description: This package provides a variety of nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. This package is a parallel implementation of the np package based on the MPI specification that incorporates the Rmpi package (Hao Yu
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine
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npRmpi-0.60-0/npRmpi/DESCRIPTION | 30
npRmpi-0.60-0/npRmpi/MD5 | 503
npRmpi-0.60-0/npRmpi/NAMESPACE | 5
npRmpi-0.60-0/npRmpi/R/Rcoll.R | 80
npRmpi-0.60-0/npRmpi/R/Rmpi.R | 3
npRmpi-0.60-0/npRmpi/R/Rparutilities.R | 238
npRmpi-0.60-0/npRmpi/R/b.star.R | 2
npRmpi-0.60-0/npRmpi/R/bandwidth.R | 42
npRmpi-0.60-0/npRmpi/R/conbandwidth.R | 62
npRmpi-0.60-0/npRmpi/R/condbandwidth.R | 60
npRmpi-0.60-0/npRmpi/R/condensity.R | 105
npRmpi-0.60-0/npRmpi/R/condistribution.R | 97
npRmpi-0.60-0/npRmpi/R/dbandwidth.R | 41
npRmpi-0.60-0/npRmpi/R/density.R | 76
npRmpi-0.60-0/npRmpi/R/distribution.R | 71
npRmpi-0.60-0/npRmpi/R/kbandwidth.R | 29
npRmpi-0.60-0/npRmpi/R/kernelsum.R | 3
npRmpi-0.60-0/npRmpi/R/np.condensity.R | 142
npRmpi-0.60-0/npRmpi/R/np.condensity.bw.R | 72
npRmpi-0.60-0/npRmpi/R/np.condistribution.R | 145
npRmpi-0.60-0/npRmpi/R/np.condistribution.bw.R | 124
npRmpi-0.60-0/npRmpi/R/np.conmode.R | 57
npRmpi-0.60-0/npRmpi/R/np.copula.R | 13
npRmpi-0.60-0/npRmpi/R/np.density.R | 65
npRmpi-0.60-0/npRmpi/R/np.density.bw.R | 81
npRmpi-0.60-0/npRmpi/R/np.distribution.R | 70
npRmpi-0.60-0/npRmpi/R/np.distribution.bw.R | 80
npRmpi-0.60-0/npRmpi/R/np.kernel.R | 80
npRmpi-0.60-0/npRmpi/R/np.plot.R | 24
npRmpi-0.60-0/npRmpi/R/np.plregression.R | 61
npRmpi-0.60-0/npRmpi/R/np.qcmstest.R | 8
npRmpi-0.60-0/npRmpi/R/np.qregression.R | 91
npRmpi-0.60-0/npRmpi/R/np.quantile.R |only
npRmpi-0.60-0/npRmpi/R/np.regression.R | 95
npRmpi-0.60-0/npRmpi/R/np.regression.bw.R | 59
npRmpi-0.60-0/npRmpi/R/np.sigtest.R | 546 -
npRmpi-0.60-0/npRmpi/R/np.singleindex.R | 215
npRmpi-0.60-0/npRmpi/R/np.singleindex.bw.R | 58
npRmpi-0.60-0/npRmpi/R/np.smoothcoef.R | 190
npRmpi-0.60-0/npRmpi/R/np.smoothcoef.bw.R | 87
npRmpi-0.60-0/npRmpi/R/npregiv.R | 100
npRmpi-0.60-0/npRmpi/R/npregivderiv.R | 86
npRmpi-0.60-0/npRmpi/R/plbandwidth.R | 30
npRmpi-0.60-0/npRmpi/R/qregression.R | 75
npRmpi-0.60-0/npRmpi/R/rbandwidth.R | 39
npRmpi-0.60-0/npRmpi/R/regression.R | 94
npRmpi-0.60-0/npRmpi/R/sibandwidth.R | 8
npRmpi-0.60-0/npRmpi/R/sigtest.R | 22
npRmpi-0.60-0/npRmpi/R/smoothbandwidth.R | 31
npRmpi-0.60-0/npRmpi/R/util.R | 176
npRmpi-0.60-0/npRmpi/R/zzz.R | 2
npRmpi-0.60-0/npRmpi/README.md | 18
npRmpi-0.60-0/npRmpi/build |only
npRmpi-0.60-0/npRmpi/cleanup | 4
npRmpi-0.60-0/npRmpi/configure | 11
npRmpi-0.60-0/npRmpi/configure.ac | 11
npRmpi-0.60-0/npRmpi/data/cps71.rda |binary
npRmpi-0.60-0/npRmpi/demo/00Index | 1
npRmpi-0.60-0/npRmpi/demo/npcdensls_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npcdensls_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npcdensml_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npcdensml_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npcdistls_npRmpi.R | 4
npRmpi-0.60-0/npRmpi/demo/npcdistls_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npcmstest_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npcmstest_serial.R | 1
npRmpi-0.60-0/npRmpi/demo/npconmode_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npconmode_serial.R | 1
npRmpi-0.60-0/npRmpi/demo/npcopula_npRmpi.R | 4
npRmpi-0.60-0/npRmpi/demo/npcopula_serial.R | 4
npRmpi-0.60-0/npRmpi/demo/npdeneqtest_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npdeneqtest_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npdeptest_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npdeptest_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npglpreg_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npglpreg_serial.R | 3
npRmpi-0.60-0/npRmpi/demo/npindexich_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npindexich_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npindexks_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npindexks_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npqreg_npRmpi.R | 1
npRmpi-0.60-0/npRmpi/demo/npqreg_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npregiv_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npregiv_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npreglcaic_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npreglcaic_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npreglcls_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npreglcls_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npregllaic_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npregllaic_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npregllls_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npregllls_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npscoef_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npscoef_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npsdeptest_npRmpi.R | 8
npRmpi-0.60-0/npRmpi/demo/npsdeptest_serial.R | 8
npRmpi-0.60-0/npRmpi/demo/npsigtest_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npsigtest_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npsymtest_npRmpi.R | 8
npRmpi-0.60-0/npRmpi/demo/npsymtest_serial.R | 8
npRmpi-0.60-0/npRmpi/demo/npudensls_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npudensls_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npudensml_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npudensml_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npudistcdf_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npudistcdf_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/npunitest_npRmpi.R | 2
npRmpi-0.60-0/npRmpi/demo/npunitest_serial.R | 2
npRmpi-0.60-0/npRmpi/demo/serial/npcdensls_serial.Rout | 35
npRmpi-0.60-0/npRmpi/demo/serial/npcdensml_serial.Rout | 33
npRmpi-0.60-0/npRmpi/demo/serial/npcdistls_serial.Rout | 31
npRmpi-0.60-0/npRmpi/demo/serial/npcmstest_serial.Rout | 18
npRmpi-0.60-0/npRmpi/demo/serial/npconmode_serial.Rout | 48
npRmpi-0.60-0/npRmpi/demo/serial/npcopula_serial.Rout | 25
npRmpi-0.60-0/npRmpi/demo/serial/npdeneqtest_serial.Rout | 19
npRmpi-0.60-0/npRmpi/demo/serial/npdeptest_serial.Rout | 19
npRmpi-0.60-0/npRmpi/demo/serial/npglpreg_serial.Rout | 62
npRmpi-0.60-0/npRmpi/demo/serial/npindexich_serial.Rout | 35
npRmpi-0.60-0/npRmpi/demo/serial/npindexks_serial.Rout | 45
npRmpi-0.60-0/npRmpi/demo/serial/npplreg_serial.Rout | 71
npRmpi-0.60-0/npRmpi/demo/serial/npqreg_serial.Rout | 25
npRmpi-0.60-0/npRmpi/demo/serial/npregiv_serial.Rout | 19
npRmpi-0.60-0/npRmpi/demo/serial/npreglcaic_serial.Rout | 37
npRmpi-0.60-0/npRmpi/demo/serial/npreglcls_serial.Rout | 33
npRmpi-0.60-0/npRmpi/demo/serial/npregllaic_serial.Rout | 37
npRmpi-0.60-0/npRmpi/demo/serial/npregllls_serial.Rout | 63
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npRmpi-0.60-0/npRmpi/man/mpi.apply.Rd | 18
npRmpi-0.60-0/npRmpi/man/mpi.bcast.Rd | 14
npRmpi-0.60-0/npRmpi/man/mpi.bcast.Robj.Rd | 11
npRmpi-0.60-0/npRmpi/man/mpi.bcast.cmd.Rd | 7
npRmpi-0.60-0/npRmpi/man/mpi.cart.coords.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.cart.create.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.cart.get.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.cart.rank.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.cart.shift.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.cartdim.get.Rd | 2
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npRmpi-0.60-0/npRmpi/man/mpi.dims.create.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.gather.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.gather.Robj.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.iapply.Rd | 20
npRmpi-0.60-0/npRmpi/man/mpi.parapply.Rd | 26
npRmpi-0.60-0/npRmpi/man/mpi.remote.exec.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.scatter.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.scatter.Robj.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.send.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.sendrecv.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.setup.rng.Rd | 2
npRmpi-0.60-0/npRmpi/man/mpi.spawn.Rslaves.Rd | 15
npRmpi-0.60-0/npRmpi/man/np-package.Rd | 124
npRmpi-0.60-0/npRmpi/man/np.cmstest.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.condensity.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.condensity.bw.Rd | 157
npRmpi-0.60-0/npRmpi/man/np.condistribution.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.condistribution.bw.Rd | 223
npRmpi-0.60-0/npRmpi/man/np.conmode.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.copula.Rd | 125
npRmpi-0.60-0/npRmpi/man/np.deneqtest.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.density.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.density.bw.Rd | 138
npRmpi-0.60-0/npRmpi/man/np.deptest.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.distribution.Rd | 22
npRmpi-0.60-0/npRmpi/man/np.distribution.bw.Rd | 201
npRmpi-0.60-0/npRmpi/man/np.kernelsum.Rd | 100
npRmpi-0.60-0/npRmpi/man/np.plot.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.plregression.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.plregression.bw.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.qcmstest.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.qregression.Rd | 73
npRmpi-0.60-0/npRmpi/man/np.quantile.Rd |only
npRmpi-0.60-0/npRmpi/man/np.regression.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.regression.bw.Rd | 165
npRmpi-0.60-0/npRmpi/man/np.sdeptest.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.sigtest.Rd | 117
npRmpi-0.60-0/npRmpi/man/np.singleindex.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.singleindex.bw.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.smoothcoef.Rd | 9
npRmpi-0.60-0/npRmpi/man/np.smoothcoef.bw.Rd | 22
npRmpi-0.60-0/npRmpi/man/np.symtest.Rd | 2
npRmpi-0.60-0/npRmpi/man/np.unitest.Rd | 2
npRmpi-0.60-0/npRmpi/man/npseed.Rd | 2
npRmpi-0.60-0/npRmpi/man/nptgauss.Rd |only
npRmpi-0.60-0/npRmpi/man/se.Rd | 2
npRmpi-0.60-0/npRmpi/man/uocquantile.Rd | 2
npRmpi-0.60-0/npRmpi/src/Makevars.win | 22
npRmpi-0.60-0/npRmpi/src/Rmpi.c | 44
npRmpi-0.60-0/npRmpi/src/hash.c |only
npRmpi-0.60-0/npRmpi/src/hash.h |only
npRmpi-0.60-0/npRmpi/src/headers.h | 269
npRmpi-0.60-0/npRmpi/src/jksum.c | 7619 ++++++++++++--
npRmpi-0.60-0/npRmpi/src/kernel.c | 53
npRmpi-0.60-0/npRmpi/src/kernelb.c | 162
npRmpi-0.60-0/npRmpi/src/kernelcv.c | 511
npRmpi-0.60-0/npRmpi/src/kernele.c | 204
npRmpi-0.60-0/npRmpi/src/matrix.c | 65
npRmpi-0.60-0/npRmpi/src/matrix.h | 1
npRmpi-0.60-0/npRmpi/src/msmpi.def |only
npRmpi-0.60-0/npRmpi/src/np.c | 3378 ++++--
npRmpi-0.60-0/npRmpi/src/nr.c | 106
npRmpi-0.60-0/npRmpi/src/statmods.c | 1376 --
npRmpi-0.60-0/npRmpi/src/tree.c | 272
npRmpi-0.60-0/npRmpi/src/tree.h | 24
npRmpi-0.60-0/npRmpi/vignettes/np_faq.Rnw | 906 +
npRmpi-0.60-0/npRmpi/vignettes/np_faq.bib | 7
228 files changed, 15818 insertions(+), 6260 deletions(-)
Title: Nonparametric kernel smoothing methods for mixed data types
Diff between np versions 0.50-1 dated 2013-03-14 and 0.60-0 dated 2014-06-01
Description: This package provides a variety of nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC:www.nserc.ca), the Social Sciences and Humanities Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical Academic Research Computing Network (SHARCNET:www.sharcnet.ca).
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine
np-0.50-1/np/COPYRIGHTS |only
np-0.50-1/np/inst/doc/entropy_np.bib |only
np-0.50-1/np/inst/doc/np.bib |only
np-0.50-1/np/inst/doc/np_faq.bib |only
np-0.50-1/np/mknpkg.sh |only
np-0.50-1/np/npver |only
np-0.50-1/np/src/Makevars |only
np-0.60-0/np/CHANGELOG | 78
np-0.60-0/np/DESCRIPTION | 26
np-0.60-0/np/MD5 | 230
np-0.60-0/np/NAMESPACE | 4
np-0.60-0/np/R/b.star.R | 2
np-0.60-0/np/R/bandwidth.R | 42
np-0.60-0/np/R/conbandwidth.R | 62
np-0.60-0/np/R/condbandwidth.R | 60
np-0.60-0/np/R/condensity.R | 105
np-0.60-0/np/R/condistribution.R | 97
np-0.60-0/np/R/dbandwidth.R | 41
np-0.60-0/np/R/density.R | 76
np-0.60-0/np/R/distribution.R | 71
np-0.60-0/np/R/kbandwidth.R | 29
np-0.60-0/np/R/kernelsum.R | 3
np-0.60-0/np/R/np.condensity.R | 142
np-0.60-0/np/R/np.condensity.bw.R | 72
np-0.60-0/np/R/np.condistribution.R | 145
np-0.60-0/np/R/np.condistribution.bw.R | 124
np-0.60-0/np/R/np.conmode.R | 57
np-0.60-0/np/R/np.copula.R | 70
np-0.60-0/np/R/np.density.R | 65
np-0.60-0/np/R/np.density.bw.R | 81
np-0.60-0/np/R/np.distribution.R | 70
np-0.60-0/np/R/np.distribution.bw.R | 80
np-0.60-0/np/R/np.kernel.R | 80
np-0.60-0/np/R/np.plot.R | 24
np-0.60-0/np/R/np.plregression.R | 61
np-0.60-0/np/R/np.qcmstest.R | 8
np-0.60-0/np/R/np.qregression.R | 91
np-0.60-0/np/R/np.quantile.R |only
np-0.60-0/np/R/np.regression.R | 95
np-0.60-0/np/R/np.regression.bw.R | 59
np-0.60-0/np/R/np.sigtest.R | 546 +-
np-0.60-0/np/R/np.singleindex.R | 215
np-0.60-0/np/R/np.singleindex.bw.R | 58
np-0.60-0/np/R/np.smoothcoef.R | 190
np-0.60-0/np/R/np.smoothcoef.bw.R | 87
np-0.60-0/np/R/npregiv.R | 100
np-0.60-0/np/R/npregivderiv.R | 86
np-0.60-0/np/R/plbandwidth.R | 30
np-0.60-0/np/R/qregression.R | 75
np-0.60-0/np/R/rbandwidth.R | 39
np-0.60-0/np/R/regression.R | 94
np-0.60-0/np/R/sibandwidth.R | 8
np-0.60-0/np/R/sigtest.R | 22
np-0.60-0/np/R/smoothbandwidth.R | 31
np-0.60-0/np/R/util.R | 176
np-0.60-0/np/R/zzz.R | 2
np-0.60-0/np/README.md | 18
np-0.60-0/np/build |only
np-0.60-0/np/data/cps71.rda |binary
np-0.60-0/np/demo/00Index | 1
np-0.60-0/np/demo/constrained.R |only
np-0.60-0/np/demo/tree.R | 16
np-0.60-0/np/inst/COPYRIGHTS |only
np-0.60-0/np/inst/doc/entropy_np.R |only
np-0.60-0/np/inst/doc/entropy_np.pdf |binary
np-0.60-0/np/inst/doc/np.R |only
np-0.60-0/np/inst/doc/np.Rnw | 6
np-0.60-0/np/inst/doc/np.pdf |binary
np-0.60-0/np/inst/doc/np_faq.Rnw | 906 ++-
np-0.60-0/np/inst/doc/np_faq.pdf |binary
np-0.60-0/np/inst/kernels.max |only
np-0.60-0/np/man/b.star.Rd | 2
np-0.60-0/np/man/gradients.Rd | 2
np-0.60-0/np/man/np-package.Rd | 133
np-0.60-0/np/man/np.cmstest.Rd | 2
np-0.60-0/np/man/np.condensity.Rd | 21
np-0.60-0/np/man/np.condensity.bw.Rd | 176
np-0.60-0/np/man/np.condistribution.Rd | 10
np-0.60-0/np/man/np.condistribution.bw.Rd | 234
np-0.60-0/np/man/np.conmode.Rd | 2
np-0.60-0/np/man/np.copula.Rd | 165
np-0.60-0/np/man/np.deneqtest.Rd | 2
np-0.60-0/np/man/np.density.Rd | 2
np-0.60-0/np/man/np.density.bw.Rd | 138
np-0.60-0/np/man/np.deptest.Rd | 2
np-0.60-0/np/man/np.distribution.Rd | 22
np-0.60-0/np/man/np.distribution.bw.Rd | 191
np-0.60-0/np/man/np.kernelsum.Rd | 111
np-0.60-0/np/man/np.plot.Rd | 2
np-0.60-0/np/man/np.plregression.Rd | 2
np-0.60-0/np/man/np.plregression.bw.Rd | 2
np-0.60-0/np/man/np.qcmstest.Rd | 2
np-0.60-0/np/man/np.qregression.Rd | 73
np-0.60-0/np/man/np.quantile.Rd |only
np-0.60-0/np/man/np.regression.Rd | 14
np-0.60-0/np/man/np.regression.bw.Rd | 141
np-0.60-0/np/man/np.sdeptest.Rd | 2
np-0.60-0/np/man/np.sigtest.Rd | 117
np-0.60-0/np/man/np.singleindex.bw.Rd | 2
np-0.60-0/np/man/np.smoothcoef.Rd | 9
np-0.60-0/np/man/np.smoothcoef.bw.Rd | 22
np-0.60-0/np/man/np.symtest.Rd | 2
np-0.60-0/np/man/np.unitest.Rd | 2
np-0.60-0/np/man/npseed.Rd | 2
np-0.60-0/np/man/nptgauss.Rd |only
np-0.60-0/np/man/se.Rd | 2
np-0.60-0/np/man/uocquantile.Rd | 2
np-0.60-0/np/src/hash.c |only
np-0.60-0/np/src/hash.h |only
np-0.60-0/np/src/headers.h | 269 -
np-0.60-0/np/src/jksum.c | 7619 +++++++++++++++++++++++++++---
np-0.60-0/np/src/kernel.c | 53
np-0.60-0/np/src/kernelb.c | 162
np-0.60-0/np/src/kernelcv.c | 511 +-
np-0.60-0/np/src/kernele.c | 204
np-0.60-0/np/src/matrix.c | 65
np-0.60-0/np/src/matrix.h | 1
np-0.60-0/np/src/np.c | 3378 +++++++++----
np-0.60-0/np/src/nr.c | 106
np-0.60-0/np/src/statmods.c | 1376 +----
np-0.60-0/np/src/tree.c | 272 +
np-0.60-0/np/src/tree.h | 24
np-0.60-0/np/vignettes |only
123 files changed, 15102 insertions(+), 5507 deletions(-)
Title: Aster Models
Diff between aster versions 0.8-27 dated 2013-07-02 and 0.8-30 dated 2014-06-01
Description: functions and datasets for Aster modeling (forest graph
exponential family conditional or unconditional canonical statistic models
for life history analysis)
Author: Charles J. Geyer
Maintainer: Charles J. Geyer
reaster.R | 4 -
tmp/cranberry56564be717fa/aster-0.8-27/aster/inst/doc/re.R |only
tmp/cranberry56564be717fa/aster-0.8-30/aster/CHANGES | 13 +++
tmp/cranberry56564be717fa/aster-0.8-30/aster/DESCRIPTION | 12 +--
tmp/cranberry56564be717fa/aster-0.8-30/aster/LICENSE | 23 ------
tmp/cranberry56564be717fa/aster-0.8-30/aster/MD5 | 27 +++----
tmp/cranberry56564be717fa/aster-0.8-30/aster/R/predict.aster.R | 38 ++++++----
tmp/cranberry56564be717fa/aster-0.8-30/aster/R/reaster.R | 26 ++++++
tmp/cranberry56564be717fa/aster-0.8-30/aster/build |only
tmp/cranberry56564be717fa/aster-0.8-30/aster/inst/doc/design.pdf |binary
tmp/cranberry56564be717fa/aster-0.8-30/aster/inst/doc/ktp.pdf |binary
tmp/cranberry56564be717fa/aster-0.8-30/aster/inst/doc/trunc.pdf |binary
tmp/cranberry56564be717fa/aster-0.8-30/aster/inst/doc/tutor.pdf |binary
tmp/cranberry56564be717fa/aster-0.8-30/aster/man/predict.aster.Rd | 26 +++++-
tmp/cranberry56564be717fa/aster-0.8-30/aster/man/reaster.Rd | 26 ++++++
tmp/cranberry56564be717fa/aster-0.8-30/aster/tests/reaster-warn.R |only
16 files changed, 131 insertions(+), 64 deletions(-)
Title: Algorithmic Complexity for Short Strings
Diff between acss versions 0.1-1 dated 2014-04-06 and 0.2-4 dated 2014-06-01
Description: Main functionality is to provide the algorithmic complexity for
short strings, an approximation of the Kolmogorov Complexity of a short
string using the coding theorem method (see ?acss). The database containing
the complexity is provided in the data only package acss.data, this package
provides functions accessing the data such as prob_random returning the
posterior probability that a given string was produced by a random process.
In addition, two traditional (but problematic) measures of complexity are
also provided: entropy and change complexity.
Author: Nicolas Gauvrit [aut],
Henrik Singmann [aut, cre],
Fernando Soler Toscano [ctb],
Hector Zenil [ctb]
Maintainer: Henrik Singmann
DESCRIPTION | 31 +++++++--------
MD5 | 27 +++++++++----
NAMESPACE | 2
R/acss.R | 97 ++++++++++++++++++++++++++++++++++--------------
R/exp1-data.R |only
R/exp2-data.R |only
R/helper.R | 19 +++++----
R/matthews2013-data.R |only
R/standard_complexity.R | 16 +++++--
data |only
man/acss.Rd | 60 ++++++++++++++++++-----------
man/entropy.Rd | 7 ++-
man/exp1.Rd |only
man/exp2.Rd |only
man/matthews2013.Rd |only
man/normalize_string.Rd | 26 ++++++------
tests |only
17 files changed, 185 insertions(+), 100 deletions(-)