Title: Text Mining Distributed Corpus Plug-In
Diff between tm.plugin.dc versions 0.2-6 dated 2014-02-21 and 0.2-7 dated 2014-06-15
Description: A plug-in for the text mining framework tm to support text mining
in a distributed way. The package provides a convenient interface for
handling distributed corpus objects based on distributed list objects.
Author: Ingo Feinerer [aut],
Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl
DESCRIPTION | 12 ++---
MD5 | 18 ++++----
NAMESPACE | 14 ++++--
R/corpus.R | 103 ++++++++++++++++++++---------------------------
R/mapper.R | 13 +----
R/reducer.R | 4 -
man/DistributedCorpus.Rd | 36 ++++++----------
man/matrix.Rd | 4 -
man/revisions.Rd | 4 -
man/tm_map.Rd | 19 ++++----
10 files changed, 103 insertions(+), 124 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-14 0.0.9
Title: Sparse and Dense Matrix Classes and Methods
Diff between Matrix versions 1.1-3 dated 2014-03-31 and 1.1-4 dated 2014-06-15
Description: Classes and methods for dense and sparse matrices and
operations on them using LAPACK and SuiteSparse.
Author: Douglas Bates
Maintainer: Martin Maechler
DESCRIPTION | 8 +--
MD5 | 115 ++++++++++++++++++++++-----------------------
NAMESPACE | 2
R/AllClass.R | 4 -
R/Auxiliaries.R | 80 +++++++++++++++++++++----------
R/CHMfactor.R | 22 ++++----
R/Csparse.R | 4 -
R/Matrix.R | 12 ++--
R/Ops.R | 7 +-
R/Tsparse.R | 15 +++--
R/dgCMatrix.R | 8 +--
R/dgTMatrix.R | 2
R/diagMatrix.R | 11 +---
R/dpoMatrix.R | 4 -
R/dppMatrix.R | 4 -
R/dsCMatrix.R | 38 ++++++++------
R/dtCMatrix.R | 26 ++++++++++
R/dtrMatrix.R | 12 ++--
R/indMatrix.R | 27 ++++++++--
R/products.R | 80 +++++++++++++++++++++++--------
R/sparseMatrix.R | 68 ++++++++++++++++++++++++--
TODO | 10 ++-
inst/doc/Comparisons.pdf |binary
inst/doc/Design-issues.pdf |binary
inst/doc/Intro2Matrix.pdf |binary
inst/doc/Introduction.pdf |binary
inst/doc/sparseModels.pdf |binary
inst/test-tools-Matrix.R | 10 ++-
man/CHMfactor-class.Rd | 27 +++++-----
man/Cholesky.Rd | 24 +++++++--
man/Diagonal.Rd | 4 -
man/KhatriRao.Rd | 1
man/USCounties.Rd | 12 ++--
man/chol.Rd | 51 ++++++++++++++-----
man/condest.Rd | 43 ++++++++++++----
man/dgeMatrix-class.Rd | 10 +--
man/dsyMatrix-class.Rd | 11 ++--
man/image-methods.Rd | 7 +-
man/lu.Rd | 3 -
man/matrix-products.Rd | 51 ++++++++-----------
man/norm.Rd | 4 +
man/pMatrix-class.Rd | 6 --
man/rcond.Rd | 21 ++++----
man/rsparsematrix.Rd |only
man/sparseMatrix.Rd | 9 +--
man/sparseVector.Rd | 2
src/Csparse.c | 67 ++++++++++++++++++++------
src/Csparse.h | 5 +
src/Mutils.c | 71 ++++++++++++++++-----------
src/Mutils.h | 6 +-
src/dgeMatrix.c | 12 ++--
src/dsCMatrix.c | 17 +++++-
src/dsCMatrix.h | 4 -
src/dsyMatrix.c | 12 +++-
src/init.c | 12 ++--
tests/Simple.R | 7 +-
tests/dpo-test.R | 6 +-
tests/factorizing.R | 17 ++++--
tests/matprod.R | 32 ++++++++++--
59 files changed, 731 insertions(+), 392 deletions(-)
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-35 dated 2014-03-14 and 0.9-36 dated 2014-06-15
Description: This package contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/lsm.basis.clmm.R | 3 +++
R/mod.R | 12 +++++++-----
R/zzz.R | 2 +-
man/RVAideMemoire-package.Rd | 4 ++--
man/pairwise.wilcox.rating.test.Rd | 2 +-
7 files changed, 24 insertions(+), 19 deletions(-)
Title: Kalman Filter, Smoother and Disturbance Smoother
Diff between KFKSDS versions 1.3 dated 2014-01-27 and 1.4 dated 2014-06-15
Description: Naive implementation of the Kalman filter, smoother and disturbance
smoother for state space models. An interface to other implementations of the
filter that are available in other packages is also provided.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
DESCRIPTION | 8 ++++----
MD5 | 9 ++++++---
NAMESPACE | 14 ++++++++------
R/predict-stsmSS.R |only
inst/CHANGES |only
man/KF.Rd | 6 ++++++
man/predict-stsmSS.Rd |only
7 files changed, 24 insertions(+), 13 deletions(-)
Title: A server-side file system viewer for shiny
Diff between shinyFiles versions 0.3.1 dated 2014-06-10 and 0.3.2 dated 2014-06-15
Description: Provides functionality for client-side navigation of
the server side file system in shiny apps. In case the app is running
locally this gives the user direct access to the file system without the
need to "download" files to a temporary location.
Author: Thomas Lin Pedersen
Maintainer: Thomas Lin Pedersen
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
inst/www/shinyFiles.js | 18 +++++++++---------
3 files changed, 15 insertions(+), 15 deletions(-)
Title: Bridging the gap between qualitative data and quantitative
analysis
Diff between qdap versions 2.0.0 dated 2014-05-31 and 2.1.0 dated 2014-06-15
Description: This package automates many of the tasks associated with
quantitative discourse analysis of transcripts containing discourse
including frequency counts of sentence types, words, sentences, turns of
talk, syllables and other assorted analysis tasks. The package
provides parsing tools for preparing transcript data. Many functions
enable the user to aggregate data by any number of grouping variables,
providing analysis and seamless integration with other R packages that
undertake higher level analysis and visualization of text. This affords
the user a more efficient and targeted analysis. qdap is designed for
transcript analysis, however, many functions are applicable to other areas
of Text Mining/Natural Language Processing.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker
qdap-2.0.0/qdap/R/tdm.R |only
qdap-2.0.0/qdap/man/tdm.Rd |only
qdap-2.0.0/qdap/vignettes/MASTER.bib |only
qdap-2.0.0/qdap/vignettes/css |only
qdap-2.0.0/qdap/vignettes/data |only
qdap-2.0.0/qdap/vignettes/imgs/tm_imgs |only
qdap-2.0.0/qdap/vignettes/tm_package_compatibility-concordance.tex |only
qdap-2.1.0/qdap/DESCRIPTION | 8
qdap-2.1.0/qdap/MD5 | 127
qdap-2.1.0/qdap/NAMESPACE | 33
qdap-2.1.0/qdap/NEWS | 83
qdap-2.1.0/qdap/R/all_words.R | 2
qdap-2.1.0/qdap/R/as.tdm.R |only
qdap-2.1.0/qdap/R/build_qdap_vignette.R |only
qdap-2.1.0/qdap/R/colsplit2df.R | 6
qdap-2.1.0/qdap/R/common.R | 2
qdap-2.1.0/qdap/R/deprecated.R |only
qdap-2.1.0/qdap/R/dissimilarity.R | 4
qdap-2.1.0/qdap/R/exclude.R | 8
qdap-2.1.0/qdap/R/multigsub.R | 40
qdap-2.1.0/qdap/R/new_project.R | 4
qdap-2.1.0/qdap/R/paste2.R | 7
qdap-2.1.0/qdap/R/polarity.R | 49
qdap-2.1.0/qdap/R/pos.R | 8
qdap-2.1.0/qdap/R/power.R | 2
qdap-2.1.0/qdap/R/qheat.R | 665
qdap-2.1.0/qdap/R/question_type.R | 2
qdap-2.1.0/qdap/R/replace_number.R | 6
qdap-2.1.0/qdap/R/unique_by.R |only
qdap-2.1.0/qdap/R/wfm.R | 172
qdap-2.1.0/qdap/R/word_cor.R | 4
qdap-2.1.0/qdap/inst/CITATION | 4
qdap-2.1.0/qdap/inst/Rmd_vignette |only
qdap-2.1.0/qdap/inst/doc/qdap_vignette.R | 1920 -
qdap-2.1.0/qdap/inst/doc/qdap_vignette.Rmd | 5496 -----
qdap-2.1.0/qdap/inst/doc/qdap_vignette.html |10227 ----------
qdap-2.1.0/qdap/inst/doc/tm_package_compatibility.R | 28
qdap-2.1.0/qdap/inst/doc/tm_package_compatibility.Rnw | 44
qdap-2.1.0/qdap/inst/doc/tm_package_compatibility.pdf |binary
qdap-2.1.0/qdap/inst/extdata/docs/Rprofile.txt |only
qdap-2.1.0/qdap/man/Dissimilarity.Rd | 4
qdap-2.1.0/qdap/man/Filter.Rd | 9
qdap-2.1.0/qdap/man/Word_Frequency_Matrix.Rd | 68
qdap-2.1.0/qdap/man/all_words.Rd | 2
qdap-2.1.0/qdap/man/as.tdm.Rd |only
qdap-2.1.0/qdap/man/build_qdap_vignette.Rd |only
qdap-2.1.0/qdap/man/common.Rd | 2
qdap-2.1.0/qdap/man/deprecated.Rd |only
qdap-2.1.0/qdap/man/exclude.Rd | 4
qdap-2.1.0/qdap/man/multigsub.Rd | 19
qdap-2.1.0/qdap/man/polarity.Rd | 21
qdap-2.1.0/qdap/man/qheat.Rd | 72
qdap-2.1.0/qdap/man/replace_number.Rd | 5
qdap-2.1.0/qdap/man/unique_by.Rd |only
qdap-2.1.0/qdap/man/word_cor.Rd | 4
qdap-2.1.0/qdap/tests |only
qdap-2.1.0/qdap/vignettes/imgs/data_convert.png |binary
qdap-2.1.0/qdap/vignettes/qdap_vignette.Rmd | 5496 -----
qdap-2.1.0/qdap/vignettes/tm_package_compatibility.Rnw | 44
59 files changed, 1449 insertions(+), 23252 deletions(-)
Title: XHMM R scripts
Diff between xhmmScripts versions 1.0 dated 2014-05-22 and 1.1 dated 2014-06-15
Description: R scripts for plotting and assessing XHMM whole-exome-sequencing-based CNV calls. XHMM (eXome Hidden Markov Model) is a C++ software package (http://atgu.mgh.harvard.edu/xhmm) written to call copy number variation (CNV) from next-generation sequencing projects, where exome capture was used (or targeted sequencing, more generally). This R package enables the user to visualize both the PCA normalization performed by XHMM and the CNVs it has called.
Author: Menachem Fromer
Maintainer: Menachem Fromer
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
R/XHMM_plots.R | 2 +-
R/readNamedMatrix.R | 12 ++++++++----
man/readNamedMatrix.Rd | 2 +-
5 files changed, 17 insertions(+), 13 deletions(-)
Title: Robust sparse K-means
Diff between RSKC versions 2.4 dated 2014-04-29 and 2.4.1 dated 2014-06-15
Description: This package contains a function RSKC which runs the robust sparse K-means clustering algorithm.
Author: Yumi Kondo
Maintainer: Yumi Kondo
DESCRIPTION | 6 +++---
MD5 | 4 ++--
src/RSKC_trimkmeans.c | 4 ++--
3 files changed, 7 insertions(+), 7 deletions(-)
Title: Programming with Big Data -- Interface to Parallel Unidata
NetCDF4 Format Data Files
Diff between pbdNCDF4 versions 0.1-2 dated 2014-02-17 and 0.1-3 dated 2014-06-15
Description: This package adds collective parallel read and write capability
to the R package ncdf4 version 1.8. Typical use is as a
parallel NetCDF4 file reader in SPMD style programming. Each R
process reads and writes its own data in a synchronized
collective mode, resulting in faster parallel performance.
Performance improvement is conditional on a parallel file system.
Author: Pragneshkumar Patel [aut, cre],
George Ostrouchov [aut],
Wei-Chen Chen [aut],
Drew Schmidt [aut],
David Pierce [aut]
Maintainer: Pragneshkumar Patel
pncdf4.R | 4
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/ChangeLog | 4
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/DESCRIPTION | 15 -
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/INSTALL | 55 ++++++
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/MD5 | 82 +++++-----
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/NAMESPACE | 4
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/R/get_winnetcdf4.r |only
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/R/ncdf4_priv_var.R | 6
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/R/ncdump.r | 11 +
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/R/windows |only
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/R/zzz.R.in | 16 -
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/README | 1
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/cleanup | 1
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/configure.win |only
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/demo/ncread_par.r | 1
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/demo/ncwrite_par.r | 1
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/inst/R.par/pncdf4.R | 20 +-
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/inst/doc/pbdNCDF4-guide.Rnw | 17 +-
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/inst/doc/pbdNCDF4-guide.pdf |binary
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/01_nc_create_par.Rd | 6
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/01_nc_open_par.Rd | 6
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/01_nc_var_par_access.Rd | 10 -
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/02_ncdump.Rd | 6
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ancdf4.Rd | 4
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ancvar_put.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/nc_create.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/nc_open.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/nc_sync.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncatt_get.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncatt_put.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncdim_def.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncvar_add.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncvar_change_missval.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncvar_def.Rd | 6
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncvar_get.Rd | 4
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/ncvar_rename.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/man/print.ncdf4.Rd | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/src/Makevars.in | 30 +--
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/src/Makevars.win |only
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/src/a.c |only
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/vignettes/pbdNCDF4-guide.Rnw | 17 +-
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/vignettes/pbdNCDF4-include/01-acknowledgement.tex | 6
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/vignettes/pbdNCDF4-include/01-copyright.tex | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/vignettes/pbdNCDF4-include/01-introduction.tex | 2
tmp/cranberry7db070483e8d/pbdNCDF4-0.1-3/pbdNCDF4/vignettes/pbdNCDF4-include/04-windows.tex |only
45 files changed, 241 insertions(+), 118 deletions(-)
Title: MWA package for causal inference in spatiotemporal event data
Diff between mwa versions 0.3 dated 2014-05-19 and 0.3.1 dated 2014-06-15
Description: MWA grants insights into causal relationships in spatiotemporal event data.
Author: Sebastian Schutte and Karsten Donnay
Maintainer: Sebastian Schutte
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/mwa.R | 42 +++++++++++++++++++++++++++---------------
inst/java/WakeCounter.jar |binary
inst/javasrc/WakeCounter.java | 12 ++++++++++++
man/matchedwake.Rd | 14 +++++---------
man/mwa-package.Rd | 9 ++++-----
man/slidingWake.Rd | 7 +++----
8 files changed, 62 insertions(+), 44 deletions(-)