Fri, 27 Jun 2014

Package tsoutliers updated to version 0.4 with previous version 0.3 dated 2014-06-16

Title: Automatic Detection of Outliers in Time Series
Description: This package implements a procedure based on the approach described in Chen and Liu (1993) for automatic detection of outliers in time series. Innovational outliers, additive outliers, level shifts, temporary changes and seasonal level shifts are considered.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle

Diff between tsoutliers versions 0.3 dated 2014-06-16 and 0.4 dated 2014-06-27

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New package threeboost with initial version 1.0
Package: threeboost
Type: Package
Title: Thresholded variable selection and prediction based on estimating equations
Version: 1.0
Date: 2014-06-18
Author: Julian Wolfson and Christopher Miller
Maintainer: Julian Wolfson
Description: This package implements a thresholded version of the EEBoost algorithm described in [Wolfson (2011, JASA)]. EEBoost is a general-purpose method for variable selection which can be applied whenever inference would be based on an estimating equation. The package currently implements variable selection based on the Generalized Estimating Equations, but can also accommodate user-provided estimating functions. Thresholded EEBoost is a generalization which allows multiple variables to enter the model at each boosting step.
License: GPL-3
Imports: Matrix
Suggests: mvtnorm
Packaged: 2014-06-26 22:46:58 UTC; Julian
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-28 01:55:23

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Package stosim updated to version 0.0.12 with previous version 0.0.11 dated 2014-05-02

Title: Stochastic Simulator for Reliability Modeling of Repairable Systems
Description: A toolkit for Reliability Availability and Maintainability (RAM) modeling of industrial process systems.
Author: Jacob T. Ormerod
Maintainer: Jacob T. Ormerod

Diff between stosim versions 0.0.11 dated 2014-05-02 and 0.0.12 dated 2014-06-27

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Package Rrdrand updated to version 0.1-9 with previous version 0.1-8 dated 2014-06-17

Title: Generate Physical Random Numbers on Intel CPUs with the RdRand instruction
Description: Make use of the physical random number accessed by the RdRand instruction in recent Intel CPUs (Ivy Bridge and later).
Author: Eiji NAKAMA , Junji NAKANO
Maintainer: Eiji NAKAMA

Diff between Rrdrand versions 0.1-8 dated 2014-06-17 and 0.1-9 dated 2014-06-27

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Package npRmpi updated to version 0.60-2 with previous version 0.60-0 dated 2014-06-01

Title: Parallel nonparametric kernel smoothing methods for mixed data types
Description: This package provides a variety of nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. This package is a parallel implementation of the np package based on the MPI specification that incorporates the Rmpi package (Hao Yu ) with minor modifications and we are extremely grateful to Hao Yu for his contributions to the R community. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC:www.nserc.ca), the Social Sciences and Humanities Research Council of Canada (SSHRC:www.sshrc.ca), and the Shared Hierarchical Academic Research Computing Network (SHARCNET:www.sharcnet.ca).
Author: Jeffrey S. Racine [aut, cre], Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine

Diff between npRmpi versions 0.60-0 dated 2014-06-01 and 0.60-2 dated 2014-06-27

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Package dynBiplotGUI updated to version 1.1.0 with previous version 1.0.1 dated 2014-01-08

Title: dynBiplotGUI: Full Interactive GUI for Dynamic Biplot in R
Description: A GUI to solve Dynamic Biplots, classic Biplot and HJ-biplot. Try matrices of 2-way and 3-way. Multilanguage.
Author: Jaime Egido
Maintainer: Jaime Egido

Diff between dynBiplotGUI versions 1.0.1 dated 2014-01-08 and 1.1.0 dated 2014-06-27

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Package miceadds updated to version 0.13-7 with previous version 0.12-9 dated 2014-05-08

Title: Some additional multiple imputation functions, especially for mice
Description: The package miceadds contains some auxiliary functions for multiple imputation which complements existing functionality in R. In addition to some utility functions, main features include plausible value imputation, multilevel imputation functions, imputation using partial least squares (PLS) for high dimensional predictors and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch

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Package ldr updated to version 1.3.2 with previous version 1.3 dated 2014-01-03

Title: Methods for likelihood-based dimension reduction in regression
Description: Functions, methods, and data sets for fitting likelihood-based dimension reduction in regression, using principal fitted components (pfc), likelihood acquired directions (lad), covariance reducing models (core).
Author: Kofi Placid Adragni, Andrew Raim
Maintainer: Kofi Placid Adragni

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New package GeoGenetix with initial version 0.0.1
Package: GeoGenetix
Title: Quantification of the effect of geographic versus environmental isolation on genetic differentiation
Author: Filippo Botta, Gilles Guillot
Description: Quantification of the effect of geographic versus environmental isolation on genetic differentiation
Maintainer: Filippo Botta
URL: http://www2.imm.dtu.dk/~gigu/Tangle
License: GPL
Version: 0.0.1
Date: Fri Jun 27 17:23:53 2014
Depends: RandomFields
Packaged: 2014-06-27 15:24:18 UTC; gilles
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-06-27 18:40:34

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Package Ecdat updated to version 0.2-6 with previous version 0.2-5 dated 2014-04-08

Title: Data sets for econometrics
Description: Data sets for econometrics
Author: Yves Croissant
Maintainer: Spencer Graves

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Package cond updated to version 1.2-3 with previous version 1.2-2 dated 2014-04-03

Title: Approximate conditional inference for logistic and loglinear models
Description: Higher order likelihood-based inference for logistic and loglinear models
Author: S original by Alessandra R. Brazzale . R port by Alessandra R. Brazzale , following earlier work by Douglas Bates.
Maintainer: Alessandra R. Brazzale

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New package BANOVA with initial version 0.1
Package: BANOVA
Type: Package
Title: BANOVA: Hierarchical Bayesian ANOVA Models
Version: 0.1
Date: 2014-06-20
Author: Chen Dong, Michel Wedel
SystemRequirements: jags (>= 3.3.0, see http://mcmc-jags.sourceforge.net)
Maintainer: Chen Dong
Depends: R (>= 3.0.1)
Imports: runjags (>= 1.2.1-0), coda (>= 0.16-1)
Description: BANOVA covers several Bayesian Analysis of Variance (BANOVA) models used in analysis of experimental designs in which both within- and between- subjects factors are manipulated. They can be applied to data that are common in the behavioral sciences and related fields. The package includes: Hierarchical Bayes ANOVA models with normal response, t response, Binomial(Bernoulli) response, Poisson response, ordered multinomial response and multinomial response variables. All models accommodate unobserved heterogeneity by including a normal distribution of the parameters across individuals. Outputs of the package include tables of sums of squares, effect sizes and p-values, and tables of means, which are easily interpretable for behavioral researchers. BANOVA uses JAGS as the computational platform.
License: GPL (>= 2)
Packaged: 2014-06-27 14:46:20 UTC; CDONG
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-27 18:40:24

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New package spdynmod with initial version 1.0
Package: spdynmod
Type: Package
Title: Spatio-dynamic wetland plant communities model
Description: A spatio-dynamic modelling package that focuses on three characteristic wetland plant communities in a semiarid Mediterranean wetland in response to hydrological pressures from the catchment. The package includes the data on watershed hydrological pressure and the initial raster maps of plant communities but also allows for random initial distribution of plant communities. Ongoing developments of the package focus on offering easy to use tools for creating other spatio-dynamic models.
Version: 1.0
Date: 2014/06/27
Author: Javier Martinez-Lopez , Babak Naimi , Julia Martinez-Fernandez
Maintainer: Javier Martinez-Lopez
License: GPL (>= 2)
URL: https://github.com/javimarlop/spdynmod
BugReports: http://github.com/javimarlop/spdynmod/issues
LazyLoad: yes
LazyData: yes
VignetteBuilder: knitr
Imports: deSolve, raster, animation
Suggests: knitr, roxygen2, testthat
Packaged: 2014-06-27 12:09:24 UTC; javier
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-27 16:09:03

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Package likelihood updated to version 1.6 with previous version 1.5 dated 2012-02-06

Title: Methods for maximum likelihood estimation
Description: Tools for maximum likelihood estimation of parameters of scientific models.
Author: Lora Murphy
Maintainer: Lora Murphy

Diff between likelihood versions 1.5 dated 2012-02-06 and 1.6 dated 2014-06-27

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Package TAM updated to version 1.0-3 with previous version 1.0-2.1 dated 2014-05-02

Title: Test Analysis Modules
Description: The package includes marginal and joint maximum likelihood estimation of uni- and multidimensional item response models (Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets, Structured Latent Class Analysis), fit statistics, standard error estimation, as well as plausible value imputation and weighted likelihood estimation of ability.
Author: Thomas Kiefer [aut, cre], Alexander Robitzsch [aut], Margaret Wu [aut]
Maintainer: Thomas Kiefer

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New package STEPCAM with initial version 1.0
Package: STEPCAM
Type: Package
Title: ABC-SMC inference of the STEPCAM model
Version: 1.0
Date: 18-02-2014
Author: Thijs Janzen & Fons van der Plas
Maintainer: Thijs Janzen
Depends: R (>= 3.0.2), vcd, FD
Imports: gtools, MASS
Description: This package is an implementation of the process of stepwise community assembly through the inverse process of stepwise species deletion with Stepwise Community Assembly Models (STEPCAM)
License: GPL-2
Packaged: 2014-06-27 10:12:43 UTC; p251362
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-27 13:56:18

More information about STEPCAM at CRAN
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Package sitar updated to version 1.0.1 with previous version 1.0 dated 2014-04-08

Title: SITAR growth curve analysis
Description: Functions for fitting and plotting SITAR (SuperImposition by Translation And Rotation) growth curve models
Author: Tim Cole
Maintainer: Tim Cole

Diff between sitar versions 1.0 dated 2014-04-08 and 1.0.1 dated 2014-06-27

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Package rforensicbatwing updated to version 1.3 with previous version 1.1 dated 2013-01-18

Title: BATWING for calculating forensic trace-suspect match probabilities
Description: A modified version (with great help from Ian J. Wilson) of Ian J. Wilson's program BATWING for calculating forensic trace-suspect match probabilities.
Author: Mikkel Meyer Andersen and Ian J. Wilson
Maintainer: Mikkel Meyer Andersen

Diff between rforensicbatwing versions 1.1 dated 2013-01-18 and 1.3 dated 2014-06-27

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Package mkin updated to version 0.9-29 with previous version 0.9-28 dated 2014-05-20

Title: Routines for fitting kinetic models with one or more state variables to chemical degradation data
Description: Calculation routines based on the FOCUS Kinetics Report (2006). Includes a function for conveniently defining differential equation models, model solution based on eigenvalues if possible or using numerical solvers and a choice of the optimisation methods made available by the FME package (default is a Levenberg-Marquardt variant). Please note that no warranty is implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph], Katrin Lindenberger [ctb], René Lehmann [ctb], Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke

Diff between mkin versions 0.9-28 dated 2014-05-20 and 0.9-29 dated 2014-06-27

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Package BrailleR updated to version 0.9 with previous version 0.8 dated 2013-08-26

Title: Improved access for blind useRs
Description: Blind useRs do not have access to the graphical output from R without printing the content of graph windows to an embosser of some kind. This is not as immediate as is required for efficient access to statistical output. The functions here are created so that blind people can make even better use of R.
Author: A. Jonathan R. Godfrey [aut, cre]
Maintainer: A. Jonathan R. Godfrey

Diff between BrailleR versions 0.8 dated 2013-08-26 and 0.9 dated 2014-06-27

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New package bsts with initial version 0.5.1
Package: bsts
Date: 2011-01-06
Title: Bayesian structural time series
Author: Steven L. Scott
Maintainer: Steven L. Scott
Description: Time series regression using dynamic linear models fit using MCMC.
Depends: BoomSpikeSlab, zoo, xts, Boom, R(>= 3.0.2)
LinkingTo: Boom, BH (>= 1.15.0-2)
Version: 0.5.1
License: LGPL-2.1 | file LICENSE
Packaged: 2014-06-26 22:02:33 UTC; stevescott
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-06-27 13:56:24

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Package mnormt updated to version 1.5-0 with previous version 1.4-7 dated 2013-12-04

Title: The multivariate normal and t distributions
Description: This package provides functions for computing the density and the distribution function of multivariate normal and multivariate "t" variates, and for generating random vectors sampled from these distributions. Probabilities are computed via a non-Monte Carlo method; different routines are used for the case d=1, d=2, d>2, if d denotes the number of dimensions.
Author: Fortran code by Alan Genz, R code by Adelchi Azzalini
Maintainer: Adelchi Azzalini

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Package GetNenshuJP (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-10-19 0.1

Permanent link
Package cimis (with last version 0.1-7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-11-30 0.1-7
2010-10-29 0.1-6
2010-10-26 0.1-5
2010-01-04 0.1-3
2009-07-30 0.1-2

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Package RSA updated to version 0.9.3 with previous version 0.9 dated 2014-02-14

Title: Response surface analysis
Description: Advanced response surface analysis. The main function RSA computes and compares several nested polynomial regression models (full polynomial, shifted and rotated squared differences, rising ridge surfaces, basic squared differences). The package provides plotting functions for 3d wireframe surfaces, interactive 3d plots, and contour plots. Calculates many surface parameters (a1 to a4, principal axes, stationary point, eigenvalues) and provides standard, robust, or bootstrapped standard errors and confidence intervals for them.
Author: Felix Schönbrodt
Maintainer: Felix Schönbrodt

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Package plsRglm updated to version 1.0.0 with previous version 0.8.3 dated 2014-03-10

Title: Partial least squares Regression for generalized linear models
Description: This package provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand , Nicolas Meyer , Myriam Maumy-Bertrand .
Maintainer: Frederic Bertrand

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 plsRglm-1.0.0/plsRglm/man/kfolds2CVinfos_lm.Rd                  |   36 
 plsRglm-1.0.0/plsRglm/man/kfolds2Chisq.Rd                       |   36 
 plsRglm-1.0.0/plsRglm/man/kfolds2Chisqind.Rd                    |   36 
 plsRglm-1.0.0/plsRglm/man/kfolds2Mclassed.Rd                    |   22 
 plsRglm-1.0.0/plsRglm/man/kfolds2Mclassedind.Rd                 |   22 
 plsRglm-1.0.0/plsRglm/man/kfolds2Press.Rd                       |   33 
 plsRglm-1.0.0/plsRglm/man/kfolds2Pressind.Rd                    |   32 
 plsRglm-1.0.0/plsRglm/man/kfolds2coeff.Rd                       |   34 
 plsRglm-1.0.0/plsRglm/man/loglikpls.Rd                          |  112 
 plsRglm-1.0.0/plsRglm/man/permcoefs.plsR.Rd                     |   77 
 plsRglm-1.0.0/plsRglm/man/permcoefs.plsRglm.Rd                  |   78 
 plsRglm-1.0.0/plsRglm/man/permcoefs.plsRglmnp.Rd                |   83 
 plsRglm-1.0.0/plsRglm/man/permcoefs.plsRnp.Rd                   |   80 
 plsRglm-1.0.0/plsRglm/man/pine.Rd                               |   93 
 plsRglm-1.0.0/plsRglm/man/pine_full.Rd                          |   94 
 plsRglm-1.0.0/plsRglm/man/pine_sup.Rd                           |   96 
 plsRglm-1.0.0/plsRglm/man/plot.table.summary.cv.plsRglmmodel.Rd |only
 plsRglm-1.0.0/plsRglm/man/plot.table.summary.cv.plsRmodel.Rd    |only
 plsRglm-1.0.0/plsRglm/man/plots.confints.bootpls.Rd             |  250 -
 plsRglm-1.0.0/plsRglm/man/plsR.Rd                               |  497 +-
 plsRglm-1.0.0/plsRglm/man/plsR.dof.Rd                           |   94 
 plsRglm-1.0.0/plsRglm/man/plsRglm.Rd                            |  578 +--
 plsRglm-1.0.0/plsRglm/man/predict.plsRglmmodel.Rd               |only
 plsRglm-1.0.0/plsRglm/man/predict.plsRmodel.Rd                  |only
 plsRglm-1.0.0/plsRglm/man/print.coef.plsRglmmodel.Rd            |only
 plsRglm-1.0.0/plsRglm/man/print.coef.plsRmodel.Rd               |only
 plsRglm-1.0.0/plsRglm/man/print.cv.plsRglmmodel.Rd              |only
 plsRglm-1.0.0/plsRglm/man/print.cv.plsRmodel.Rd                 |only
 plsRglm-1.0.0/plsRglm/man/signpred.Rd                           |   63 
 plsRglm-1.0.0/plsRglm/man/simul_data_UniYX.Rd                   |  133 
 plsRglm-1.0.0/plsRglm/man/simul_data_UniYX_binom.Rd             |  183 -
 plsRglm-1.0.0/plsRglm/man/simul_data_YX.Rd                      |  148 
 plsRglm-1.0.0/plsRglm/man/simul_data_complete.Rd                |  145 
 plsRglm-1.0.0/plsRglm/man/summary.cv.plsRglmmodel.Rd            |only
 plsRglm-1.0.0/plsRglm/man/summary.cv.plsRmodel.Rd               |only
 plsRglm-1.0.0/plsRglm/man/summary.plsRglmmodel.Rd               |    4 
 plsRglm-1.0.0/plsRglm/man/summary.plsRmodel.Rd                  |    8 
 plsRglm-1.0.0/plsRglm/man/tilt.bootpls.Rd                       |  112 
 plsRglm-1.0.0/plsRglm/man/tilt.bootplsglm.Rd                    |  150 
 plsRglm-1.0.0/plsRglm/vignettes                                 |only
 138 files changed, 6729 insertions(+), 6948 deletions(-)

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New package rlist with initial version 0.1
Package: rlist
Type: Package
Title: A toolset for working with lists
Version: 0.1
Author: Kun Ren
Maintainer: Kun Ren
Description: A toolset for working with lists as dataset, including filtering, mapping, grouping, sorting, updating, and many other functions, which allow functional programming style applied in list operations.
Depends: R (>= 2.15)
Date: 2014-06-27
Suggests: testthat, knitr
Imports: yaml,jsonlite,XML
License: MIT + file LICENSE
URL: http://renkun.me/rlist, https://github.com/renkun-ken/rlist
BugReports: https://github.com/renkun-ken/rlist/issues
ByteCompile: TRUE
VignetteBuilder: knitr
Packaged: 2014-06-27 01:35:40 UTC; Ken
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-06-27 06:55:15

More information about rlist at CRAN
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Package lpSolveAPI updated to version 5.5.2.0-11 with previous version 5.5.2.0-9 dated 2013-11-04

Title: R Interface for lp_solve version 5.5.2.0
Description: The lpSolveAPI package provides an R interface for lp_solve, a Mixed Integer Linear Programming (MILP) solver with support for pure linear, (mixed) integer/binary, semi-continuous and special ordered sets (SOS) models.
Author: lp_solve , Kjell Konis .
Maintainer: Kjell Konis

Diff between lpSolveAPI versions 5.5.2.0-9 dated 2013-11-04 and 5.5.2.0-11 dated 2014-06-27

 DESCRIPTION                 |   13 ++++++-------
 MD5                         |   16 ++++++++--------
 R/get.primal.solution.q     |    9 +++++++--
 inst/include/RlpSolveLink.h |    2 +-
 man/get.primal.solution.Rd  |    3 ++-
 man/set.constr.type.Rd      |    2 +-
 src/RlpSolve.c              |    1 +
 src/RlpSolveLink.c          |   20 ++++++++++++++++++++
 src/lp_solve/lp_pricePSE.c  |    3 +++
 9 files changed, 49 insertions(+), 20 deletions(-)

More information about lpSolveAPI at CRAN
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Package icensmis updated to version 1.2.1 with previous version 1.2 dated 2014-06-25

Title: Study Design and Data Analysis in the presence of error-prone diagnostic tests and self-reported outcomes
Description: We consider studies in which information from error-prone diagnostic tests or self-reports are gathered sequentially to determine the occurrence of a silent event. Using a likelihood-based approach incorporating the proportional hazards assumption, we provide functions to estimate the survival distribution and covariate effects. We also provide functions for power and sample size calculations for this setting.
Author: Xiangdong Gu and Raji Balasubramanian
Maintainer: Xiangdong Gu

Diff between icensmis versions 1.2 dated 2014-06-25 and 1.2.1 dated 2014-06-27

 icensmis-1.2.1/icensmis/DESCRIPTION         |    6 +-
 icensmis-1.2.1/icensmis/MD5                 |    9 +--
 icensmis-1.2.1/icensmis/R/RcppExports.R     |   16 -----
 icensmis-1.2.1/icensmis/R/icpower.R         |   83 ++++++++++++++++++++++------
 icensmis-1.2.1/icensmis/src/RcppExports.cpp |   74 ------------------------
 icensmis-1.2/icensmis/src/powerfuncs.cpp    |only
 6 files changed, 73 insertions(+), 115 deletions(-)

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Package hsphase updated to version 2.0.0 with previous version 1.2.6 dated 2014-03-28

Title: Phasing, sire imputation, recombination events identification and pedigree reconstruction of half-sib families using SNP data
Description: Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data
Author: Mohammad Ferdosi , Cedric Gondro
Maintainer: Mohammad Ferdosi

Diff between hsphase versions 1.2.6 dated 2014-03-28 and 2.0.0 dated 2014-06-27

 hsphase-1.2.6/hsphase/src/ohg.cpp               |only
 hsphase-1.2.6/hsphase/src/ohg.h                 |only
 hsphase-1.2.6/hsphase/src/ohp.cpp               |only
 hsphase-1.2.6/hsphase/src/ohp.h                 |only
 hsphase-2.0.0/hsphase/DESCRIPTION               |   19 ++--
 hsphase-2.0.0/hsphase/MD5                       |  112 +++++++++++-------------
 hsphase-2.0.0/hsphase/NAMESPACE                 |    2 
 hsphase-2.0.0/hsphase/R/aio.R                   |    2 
 hsphase-2.0.0/hsphase/R/bmh.R                   |    2 
 hsphase-2.0.0/hsphase/R/co.R                    |    2 
 hsphase-2.0.0/hsphase/R/cs.R                    |    2 
 hsphase-2.0.0/hsphase/R/fastDist.R              |    2 
 hsphase-2.0.0/hsphase/R/hh.R                    |    2 
 hsphase-2.0.0/hsphase/R/impute.R                |    2 
 hsphase-2.0.0/hsphase/R/maf.R                   |   15 +++
 hsphase-2.0.0/hsphase/R/namingInferedPedigree.R |    2 
 hsphase-2.0.0/hsphase/R/ohd.R                   |    2 
 hsphase-2.0.0/hsphase/R/ohg.R                   |   21 +---
 hsphase-2.0.0/hsphase/R/ohplot.R                |    2 
 hsphase-2.0.0/hsphase/R/para.R                  |    2 
 hsphase-2.0.0/hsphase/R/pogc.R                  |   15 +++
 hsphase-2.0.0/hsphase/R/prCalus.R               |   15 +++
 hsphase-2.0.0/hsphase/R/prManual.R              |   15 +++
 hsphase-2.0.0/hsphase/R/rplot.R                 |    2 
 hsphase-2.0.0/hsphase/R/rpoh.R                  |    2 
 hsphase-2.0.0/hsphase/R/rpohhsphase.R           |    2 
 hsphase-2.0.0/hsphase/R/simulateHalfsib.R       |    2 
 hsphase-2.0.0/hsphase/R/ssp.R                   |    2 
 hsphase-2.0.0/hsphase/build/vignette.rds        |binary
 hsphase-2.0.0/hsphase/inst/CITATION             |  111 +++++++++++++++++++++--
 hsphase-2.0.0/hsphase/man/hsphase-package.Rd    |   12 +-
 hsphase-2.0.0/hsphase/man/ohg.Rd                |   12 +-
 hsphase-2.0.0/hsphase/src/FastDist.cpp          |    2 
 hsphase-2.0.0/hsphase/src/FastDist.h            |    2 
 hsphase-2.0.0/hsphase/src/MAF.cpp               |   15 +++
 hsphase-2.0.0/hsphase/src/MAF.h                 |   16 +++
 hsphase-2.0.0/hsphase/src/Makevars              |    2 
 hsphase-2.0.0/hsphase/src/Makevars.win          |    3 
 hsphase-2.0.0/hsphase/src/Ohd.cpp               |    2 
 hsphase-2.0.0/hsphase/src/Ohd.h                 |    2 
 hsphase-2.0.0/hsphase/src/TypeConversion.h      |    1 
 hsphase-2.0.0/hsphase/src/block.cpp             |    2 
 hsphase-2.0.0/hsphase/src/block.h               |    4 
 hsphase-2.0.0/hsphase/src/block4Phase.cpp       |    8 -
 hsphase-2.0.0/hsphase/src/block4Phase.h         |    2 
 hsphase-2.0.0/hsphase/src/co.cpp                |    2 
 hsphase-2.0.0/hsphase/src/co.h                  |    2 
 hsphase-2.0.0/hsphase/src/diag.cpp              |    2 
 hsphase-2.0.0/hsphase/src/diag.h                |    2 
 hsphase-2.0.0/hsphase/src/hsp.cpp               |    2 
 hsphase-2.0.0/hsphase/src/hsp.h                 |    2 
 hsphase-2.0.0/hsphase/src/main.cpp              |    2 
 hsphase-2.0.0/hsphase/src/memory.cpp            |    2 
 hsphase-2.0.0/hsphase/src/memory.h              |    2 
 hsphase-2.0.0/hsphase/src/oh.cpp                |    2 
 hsphase-2.0.0/hsphase/src/oh.h                  |    2 
 hsphase-2.0.0/hsphase/src/swDetect.cpp          |    2 
 hsphase-2.0.0/hsphase/src/swDetect.h            |    2 
 hsphase-2.0.0/hsphase/vignettes/hsphase.Rnw     |    8 +
 59 files changed, 324 insertions(+), 152 deletions(-)

More information about hsphase at CRAN
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