Title: Automatic Detection of Outliers in Time Series
Diff between tsoutliers versions 0.3 dated 2014-06-16 and 0.4 dated 2014-06-27
Description: This package implements a procedure based on the approach described
in Chen and Liu (1993) for automatic detection of outliers in time series.
Innovational outliers, additive outliers, level shifts, temporary changes
and seasonal level shifts are considered.
Author: Javier López-de-Lacalle
Maintainer: Javier López-de-Lacalle
tsoutliers-0.3/tsoutliers/inst/CHANGES |only
tsoutliers-0.4/tsoutliers/DESCRIPTION | 8 +--
tsoutliers-0.4/tsoutliers/MD5 | 38 ++++++++---------
tsoutliers-0.4/tsoutliers/NAMESPACE | 10 ++--
tsoutliers-0.4/tsoutliers/R/jarque-bera-test.R | 8 +--
tsoutliers-0.4/tsoutliers/R/locate-outliers.R | 6 +-
tsoutliers-0.4/tsoutliers/R/plot-tsoutliers.R | 5 +-
tsoutliers-0.4/tsoutliers/R/remove-outliers.R | 6 +-
tsoutliers-0.4/tsoutliers/R/tsoutliers.R | 14 +++---
tsoutliers-0.4/tsoutliers/inst/doc/CHANGES.txt |only
tsoutliers-0.4/tsoutliers/inst/doc/index.html | 5 ++
tsoutliers-0.4/tsoutliers/inst/doc/tsoutliers.pdf |binary
tsoutliers-0.4/tsoutliers/man/jarque-bera-test.Rd | 18 ++++----
tsoutliers-0.4/tsoutliers/man/locate-outliers-loops.Rd | 4 -
tsoutliers-0.4/tsoutliers/man/locate-outliers.Rd | 4 -
tsoutliers-0.4/tsoutliers/man/outliers-effects.Rd | 2
tsoutliers-0.4/tsoutliers/man/outliers-regressors.Rd | 2
tsoutliers-0.4/tsoutliers/man/plot-tsoutliers.Rd | 6 +-
tsoutliers-0.4/tsoutliers/man/remove-outliers.Rd | 2
tsoutliers-0.4/tsoutliers/man/tsoutliers-package.Rd | 10 ++--
tsoutliers-0.4/tsoutliers/man/tsoutliers.Rd | 30 ++++++-------
21 files changed, 92 insertions(+), 86 deletions(-)
Title: Stochastic Simulator for Reliability Modeling of Repairable
Systems
Diff between stosim versions 0.0.11 dated 2014-05-02 and 0.0.12 dated 2014-06-27
Description: A toolkit for Reliability Availability and Maintainability (RAM) modeling of industrial process systems.
Author: Jacob T. Ormerod
Maintainer: Jacob T. Ormerod
DESCRIPTION | 12 ++++++------
MD5 | 4 ++--
src/MultiTrainWithInventory.cpp | 2 +-
3 files changed, 9 insertions(+), 9 deletions(-)
Title: Generate Physical Random Numbers on Intel CPUs with the RdRand
instruction
Diff between Rrdrand versions 0.1-8 dated 2014-06-17 and 0.1-9 dated 2014-06-27
Description: Make use of the physical random number accessed by the RdRand
instruction in recent Intel CPUs (Ivy Bridge and later).
Author: Eiji NAKAMA
Maintainer: Eiji NAKAMA
Changelog | 1 +
DESCRIPTION | 12 ++++++------
MD5 | 8 ++++----
man/Rrdrand-package.Rd | 4 ++--
src/Rrdrand.c | 33 +++++++++++++++++++++++++++------
5 files changed, 40 insertions(+), 18 deletions(-)
Title: Parallel nonparametric kernel smoothing methods for mixed data
types
Diff between npRmpi versions 0.60-0 dated 2014-06-01 and 0.60-2 dated 2014-06-27
Description: This package provides a variety of nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. This package is a parallel implementation of the np package based on the MPI specification that incorporates the Rmpi package (Hao Yu
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine
CHANGELOG | 25 ++
DESCRIPTION | 8
MD5 | 156 ++++++-------
R/bandwidth.R | 8
R/conbandwidth.R | 11
R/condbandwidth.R | 11
R/dbandwidth.R | 11
R/np.condensity.bw.R | 30 ++
R/np.condistribution.bw.R | 29 ++
R/np.density.bw.R | 46 +++-
R/np.distribution.bw.R | 36 ++-
R/np.plregression.R | 78 +++---
R/np.plregression.bw.R | 70 +++---
R/np.qregression.R | 7
R/np.regression.R | 29 ++
R/np.regression.bw.R | 36 ++-
R/np.singleindex.R | 40 ++-
R/np.singleindex.bw.R | 403 +++++++++++++++++++----------------
R/np.smoothcoef.R | 31 ++
R/np.smoothcoef.bw.R | 484 ++++++++++++++++++++++---------------------
R/plbandwidth.R | 7
R/rbandwidth.R | 10
R/sibandwidth.R | 5
R/smoothbandwidth.R | 9
R/util.R | 5
R/zzz.R | 2
README.md | 12 -
cleanup | 2
inst/doc/np_faq.Rnw | 360 ++++++++++++++++++-------------
inst/doc/np_faq.pdf |binary
man/data-oecd.Rd | 2
man/data-wage1.Rd | 14 -
man/mpi.bcast.Rd | 2
man/mpi.bcast.Robj.Rd | 2
man/mpi.bcast.cmd.Rd | 9
man/mpi.cart.coords.Rd | 2
man/mpi.const.Rd | 2
man/mpi.exit.Rd | 2
man/mpi.get.sourcetag.Rd | 2
man/mpi.parSim.Rd | 4
man/mpi.parapply.Rd | 2
man/mpi.realloc.Rd | 12 -
man/mpi.remote.exec.Rd | 2
man/mpi.spawn.Rslaves.Rd | 6
man/np-package.Rd | 8
man/np.condensity.bw.Rd | 14 -
man/np.condistribution.Rd | 6
man/np.condistribution.bw.Rd | 18 -
man/np.copula.Rd | 16 -
man/np.density.Rd | 2
man/np.density.bw.Rd | 8
man/np.deptest.Rd | 2
man/np.distribution.Rd | 8
man/np.distribution.bw.Rd | 16 -
man/np.kernelsum.Rd | 22 -
man/np.plregression.Rd | 17 +
man/np.plregression.bw.Rd | 17 -
man/np.qcmstest.Rd | 15 -
man/np.qregression.Rd | 4
man/np.quantile.Rd | 4
man/np.regression.Rd | 17 +
man/np.regression.bw.Rd | 6
man/np.regressioniv.Rd | 24 +-
man/np.regressionivderiv.Rd | 22 -
man/np.sdeptest.Rd | 2
man/np.sigtest.Rd | 6
man/np.singleindex.Rd | 13 -
man/np.singleindex.bw.Rd | 2
man/np.smoothcoef.Rd | 20 +
man/np.smoothcoef.bw.Rd | 2
man/np.unitest.Rd | 2
man/uocquantile.Rd | 4
src/headers.h | 2
src/jksum.c | 202 +++++++++++------
src/kernelcv.c | 122 +++++++---
src/kernele.c | 139 ++++++------
src/np.c | 190 ++++++++++++----
src/statmods.c | 74 ++++--
vignettes/np_faq.Rnw | 360 ++++++++++++++++++-------------
79 files changed, 2062 insertions(+), 1348 deletions(-)
Title: dynBiplotGUI: Full Interactive GUI for Dynamic Biplot in R
Diff between dynBiplotGUI versions 1.0.1 dated 2014-01-08 and 1.1.0 dated 2014-06-27
Description: A GUI to solve Dynamic Biplots, classic Biplot and HJ-biplot. Try matrices of 2-way and 3-way. Multilanguage.
Author: Jaime Egido
Maintainer: Jaime Egido
ChangeLog | 16 +++++
DESCRIPTION | 13 ++--
MD5 | 18 +++---
NAMESPACE | 3 +
R/dynBiplot.R | 129 ++++++++++++++++++++++++++++----------------
inst/lang/Language.csv | 12 ++--
man/dynBiplot.Rd | 16 ++++-
man/dynBiplotGUI-package.Rd | 6 +-
man/panelAnalysis_en.Rd | 3 -
man/panelAnalysis_es.Rd | 3 -
10 files changed, 146 insertions(+), 73 deletions(-)
Title: Some additional multiple imputation functions, especially for
mice
Diff between miceadds versions 0.12-9 dated 2014-05-08 and 0.13-7 dated 2014-06-27
Description: The package miceadds contains some auxiliary functions for
multiple imputation which complements existing functionality in R.
In addition to some utility functions, main features include
plausible value imputation, multilevel imputation functions,
imputation using partial least squares (PLS) for high dimensional
predictors and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch
DESCRIPTION | 10 +++++-----
MD5 | 37 +++++++++++++++++++++++++++++++------
NAMESPACE | 25 ++++++++++++++++++++++++-
R/ARb_utils.R |only
R/Rsessinfo.R |only
R/Rutils.R |only
R/cppfunction.R |only
R/ma.wtd.statNA.R |only
R/round2.R |only
R/str_C.expand.grid.R |only
R/sumpreserving.rounding.R |only
R/systime.R |only
inst/NEWS | 21 ++++++++++++++-------
man/Reval.Rd |only
man/Rsessinfo.Rd |only
man/crlrem.Rd |only
man/cxxfunction.copy.Rd |only
man/data.ma.Rd | 1 +
man/grep.vec.Rd |only
man/index.dataframe.Rd |only
man/load.Rdata.Rd |only
man/ma.wtd.statNA.Rd |only
man/miceadds-package.Rd | 2 +-
man/output.format1.Rd |only
man/round2.Rd |only
man/save.Rdata.Rd |only
man/scan.vector.Rd |only
man/source.all.Rd |only
man/str_C.expand.grid.Rd |only
man/sumpreserving.rounding.Rd |only
man/systime.Rd |only
src/kernelpls_algorithm.h | 1 +
32 files changed, 77 insertions(+), 20 deletions(-)
Title: Methods for likelihood-based dimension reduction in regression
Diff between ldr versions 1.3 dated 2014-01-03 and 1.3.2 dated 2014-06-27
Description: Functions, methods, and data sets for fitting likelihood-based dimension reduction in regression, using principal fitted components (pfc), likelihood acquired directions (lad), covariance reducing models (core).
Author: Kofi Placid Adragni, Andrew Raim
Maintainer: Kofi Placid Adragni
DESCRIPTION | 12 -
MD5 | 43 +++--
NAMESPACE | 27 +--
R/core.R | 94 ++++++++----
R/lad.R | 42 +----
R/ldr.R | 3
R/orthonorm.R |only
R/pfc.R | 380 +++++++++++++++++++++++---------------------------
R/plot.lad.R | 2
R/plot.pfc.R | 39 ++---
R/print.pfc.R | 6
R/print.structure.R | 17 +-
R/print.summarycore.R | 7
R/print.summarypfc.R | 50 ++----
R/screen.pfc.R | 35 ++--
R/structure.test.R | 107 ++++----------
R/summary.core.R | 11 +
R/summary.pfc.R | 58 ++++---
data/OH.rda |binary
data/bigmac.rda |binary
data/flea.rda |binary
data/snakes.rda |binary
inst |only
man/orthonorm.Rd |only
24 files changed, 446 insertions(+), 487 deletions(-)
Title: Data sets for econometrics
Diff between Ecdat versions 0.2-5 dated 2014-04-08 and 0.2-6 dated 2014-06-27
Description: Data sets for econometrics
Author: Yves Croissant
Maintainer: Spencer Graves
DESCRIPTION | 10
MD5 | 254 ++++++++---------
data/Accident.rda |binary
data/Airline.rda |binary
data/Airq.rda |binary
data/Benefits.rda |binary
data/Bids.rda |binary
data/BudgetFood.rda |binary
data/BudgetItaly.rda |binary
data/BudgetUK.rda |binary
data/Bwages.rda |binary
data/CPSch3.rda |binary
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data/CRSPday.rda |binary
data/CRSPmon.rda |binary
data/Capm.rda |binary
data/Car.rda |binary
data/Caschool.rda |binary
data/Catsup.rda |binary
data/Cigar.rda |binary
data/Cigarette.rda |binary
data/Clothing.rda |binary
data/Computers.rda |binary
data/Consumption.rda |binary
data/Cracker.rda |binary
data/Crime.rda |binary
data/DM.rda |binary
data/Diamond.rda |binary
data/Doctor.rda |binary
data/DoctorAUS.rda |binary
data/DoctorContacts.rda |binary
data/Earnings.rda |binary
data/Electricity.rda |binary
data/Fair.rda |binary
data/Fatality.rda |binary
data/FinancialCrisisFiles.rda |binary
data/Fishing.rda |binary
data/Forward.rda |binary
data/FriendFoe.rda |binary
data/Garch.rda |binary
data/Gasoline.rda |binary
data/Griliches.rda |binary
data/Grunfeld.rda |binary
data/HC.rda |binary
data/HI.rda |binary
data/Hdma.rda |binary
data/Heating.rda |binary
data/Hedonic.rda |binary
data/Housing.rda |binary
data/Hstarts.rda |binary
data/Icecream.rda |binary
data/IncomeUK.rda |binary
data/Irates.rda |binary
data/Journals.rda |binary
data/Kakadu.rda |binary
data/Ketchup.rda |binary
data/Klein.rda |binary
data/LT.rda |binary
data/LaborSupply.rda |binary
data/Labour.rda |binary
data/Longley.rda |binary
data/MCAS.rda |binary
data/MW.rda |binary
data/Macrodat.rda |binary
data/Males.rda |binary
data/ManufCost.rda |binary
data/Mathlevel.rda |binary
data/MedExp.rda |binary
data/Metal.rda |binary
data/Mishkin.rda |binary
data/Mode.rda |binary
data/ModeChoice.rda |binary
data/Mofa.rda |binary
data/Money.rda |binary
data/MoneyUS.rda |binary
data/Mpyr.rda |binary
data/Mroz.rda |binary
data/MunExp.rda |binary
data/NaturalPark.rda |binary
data/Nerlove.rda |binary
data/OFP.rda |binary
data/Oil.rda |binary
data/Orange.rda |binary
data/PE.rda |binary
data/PPP.rda |binary
data/PSID.rda |binary
data/Participation.rda |binary
data/PatentsHGH.rda |binary
data/PatentsRD.rda |binary
data/Pound.rda |binary
data/Pricing.rda |binary
data/Produc.rda |binary
data/RetSchool.rda |binary
data/SP500.rda |binary
data/Schooling.rda |binary
data/Solow.rda |binary
data/Somerville.rda |binary
data/Star.rda |binary
data/Strike.rda |binary
data/StrikeDur.rda |binary
data/StrikeNb.rda |binary
data/SumHes.rda |binary
data/Tbrate.rda |binary
data/Tobacco.rda |binary
data/Train.rda |binary
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data/Tuna.rda |binary
data/USFinanceIndustry.rda |binary
data/USclassifiedDocuments.rda |only
data/USstateAbbreviations.rda |binary
data/UStaxWords.rda |binary
data/UnempDur.rda |binary
data/Unemployment.rda |binary
data/University.rda |binary
data/VietNamH.rda |binary
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data/Wages.rda |binary
data/Wages1.rda |binary
data/Workinghours.rda |binary
data/Yen.rda |binary
data/Yogurt.rda |binary
data/bankingCrises.rda |binary
data/datalist | 2
data/incomeInequality.rda |binary
data/nonEnglishNames.rda |binary
man/CRANpackages.Rd |only
man/FinancialCrisisFiles.Rd | 1
man/USclassifiedDocuments.Rd |only
man/incomeInequality.Rd | 602 ++++++++++++++++++++---------------------
130 files changed, 438 insertions(+), 431 deletions(-)
Title: Approximate conditional inference for logistic and loglinear
models
Diff between cond versions 1.2-2 dated 2014-04-03 and 1.2-3 dated 2014-06-27
Description: Higher order likelihood-based inference for logistic and
loglinear models
Author: S original by Alessandra R. Brazzale
Maintainer: Alessandra R. Brazzale
cond-1.2-2/cond/inst/vignettes |only
cond-1.2-3/cond/CHANGES | 4 ++++
cond-1.2-3/cond/DESCRIPTION | 8 ++++----
cond-1.2-3/cond/LICENCE | 2 +-
cond-1.2-3/cond/MD5 | 35 +++++++++++++++++++----------------
cond-1.2-3/cond/R/cond.R | 2 +-
cond-1.2-3/cond/R/zzz.R | 2 +-
cond-1.2-3/cond/build |only
cond-1.2-3/cond/data/aids.rda |binary
cond-1.2-3/cond/data/airway.rda |binary
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cond-1.2-3/cond/data/dormicum.rda |binary
cond-1.2-3/cond/data/fraudulent.rda |binary
cond-1.2-3/cond/data/fungal.rda |binary
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cond-1.2-3/cond/man/fraudulent.Rd | 6 +++---
cond-1.2-3/cond/vignettes |only
19 files changed, 33 insertions(+), 26 deletions(-)
Title: Methods for maximum likelihood estimation
Diff between likelihood versions 1.5 dated 2012-02-06 and 1.6 dated 2014-06-27
Description: Tools for maximum likelihood estimation of parameters
of scientific models.
Author: Lora Murphy
Maintainer: Lora Murphy
likelihood-1.5/likelihood/COPYRIGHT |only
likelihood-1.6/likelihood/DESCRIPTION | 13 +--
likelihood-1.6/likelihood/MD5 | 15 +--
likelihood-1.6/likelihood/NAMESPACE | 1
likelihood-1.6/likelihood/R/anneal.R | 29 +++++--
likelihood-1.6/likelihood/R/write_results.R | 31 ++++----
likelihood-1.6/likelihood/demo/annealing1.R | 38 +++++-----
likelihood-1.6/likelihood/man/anneal.Rd | 8 +-
likelihood-1.6/likelihood/man/simulated_annealing_algorithm.Rd | 2
9 files changed, 78 insertions(+), 59 deletions(-)
Title: Test Analysis Modules
Diff between TAM versions 1.0-2.1 dated 2014-05-02 and 1.0-3 dated 2014-06-27
Description:
The package includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets,
Structured Latent Class Analysis),
fit statistics, standard error estimation, as
well as plausible value imputation and weighted likelihood
estimation of ability.
Author: Thomas Kiefer [aut, cre], Alexander Robitzsch [aut], Margaret Wu [aut]
Maintainer: Thomas Kiefer
DESCRIPTION | 11
MD5 | 72 -
NAMESPACE | 7
R/TAM-internal_postproc.R | 2
R/designMatrices.mfr.R | 25
R/designMatrices.mfr2.R |only
R/designMatrices.mfr_aux2.R |only
R/designMatrices_aux2.R |only
R/plot.tam.R | 103 +-
R/summary.tam.R | 5
R/summary.tam.mml.3pl.R |only
R/tam.fit.R | 276 +++--
R/tam.jml.R | 38
R/tam.jml2.R | 39
R/tam.mml.2pl.R | 16
R/tam.mml.3pl.R |only
R/tam.mml.3pl.algorithm.R |only
R/tam.mml.3pl.est.guessing.R |only
R/tam.mml.3pl.est.intercepts.R |only
R/tam.mml.3pl.est.slopes.R |only
R/tam.mml.3pl.postproc.R |only
R/tam.mml.3pl.preproc.R |only
R/tam.mml.R | 1695 +++++++++++++++++------------------
R/tam.mml.mfr.R | 103 +-
R/tam.modelfit.R |only
R/tam.pv.R | 12
R/tam.q3.aux.R |only
R/tam.se.R | 385 +++++--
R/tam.wle.R | 3
R/tam_thurstonian_threshold.R | 6
R/zzz.R | 2
inst/NEWS | 63 +
man/TAM-package.Rd | 2
man/data.timssAusTwn.Rd | 7
man/designMatrices.Rd | 12
man/plot.tam.Rd | 58 -
man/tam.fit.Rd | 4
man/tam.jml.Rd | 23
man/tam.mml.3pl.Rd |only
man/tam.mml.Rd | 161 +++
man/tam.modelfit.Rd |only
man/tam.se.Rd | 19
man/tam.threshold.Rd | 6
src/tam_mml_3pl_helper_functions.cpp |only
src/tam_mml_mfr_helper.cpp |only
src/tam_modelfit_aux.cpp |only
46 files changed, 1850 insertions(+), 1305 deletions(-)
Title: SITAR growth curve analysis
Diff between sitar versions 1.0 dated 2014-04-08 and 1.0.1 dated 2014-06-27
Description: Functions for fitting and plotting SITAR (SuperImposition by
Translation And Rotation) growth curve models
Author: Tim Cole
Maintainer: Tim Cole
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++-----
NEWS |only
R/plot.sitar.R | 2 +-
R/sitar.R | 2 +-
R/sitarlib.R | 19 ++++++++++++++-----
man/xaxsd.rd | 4 +++-
7 files changed, 29 insertions(+), 17 deletions(-)
Title: BATWING for calculating forensic trace-suspect match
probabilities
Diff between rforensicbatwing versions 1.1 dated 2013-01-18 and 1.3 dated 2014-06-27
More information about rforensicbatwing at CRAN
Description: A modified version (with great help from Ian J. Wilson) of Ian J. Wilson's program BATWING for calculating forensic trace-suspect match probabilities.
Author: Mikkel Meyer Andersen and Ian J. Wilson
Maintainer: Mikkel Meyer Andersen
DESCRIPTION | 15 +++++++--------
MD5 | 14 +++++++-------
NAMESPACE | 1 +
R/batwing.R | 4 ++++
R/coalmatchprob.R | 11 ++++++++++-
R/internalbatwing.R | 4 ++--
src/forensic.c | 2 +-
src/pars.c | 2 +-
8 files changed, 33 insertions(+), 20 deletions(-)
Permanent link
Title: Routines for fitting kinetic models with one or more state
variables to chemical degradation data
Diff between mkin versions 0.9-28 dated 2014-05-20 and 0.9-29 dated 2014-06-27
Description: Calculation routines based on the FOCUS Kinetics Report (2006).
Includes a function for conveniently defining differential equation models,
model solution based on eigenvalues if possible or using numerical solvers
and a choice of the optimisation methods made available by the FME package
(default is a Levenberg-Marquardt variant). Please note that no warranty is
implied for correctness of results or fitness for a particular purpose.
Author: Johannes Ranke [aut, cre, cph],
Katrin Lindenberger [ctb],
René Lehmann [ctb],
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke
DESCRIPTION | 13 --
MD5 | 46 +++----
R/endpoints.R | 30 +++-
R/geometric_mean.R |only
R/ilr.R | 2
R/mkin_long_to_wide.R | 2
R/mkin_wide_to_long.R | 2
R/mkinerrmin.R | 4
R/mkinresplot.R | 5
R/transform_odeparms.R | 3
README.md | 2
TODO | 4
data/FOCUS_2006_DFOP_ref_A_to_B.rda |binary
data/FOCUS_2006_FOMC_ref_A_to_F.rda |binary
data/FOCUS_2006_HS_ref_A_to_F.rda |binary
data/FOCUS_2006_SFO_ref_A_to_F.rda |binary
data/FOCUS_2006_datasets.RData |binary
data/schaefer07_complex_case.RData |binary
inst/doc/FOCUS_L.html | 226 +++++++++++++++++-------------------
inst/doc/FOCUS_Z.pdf |binary
inst/doc/mkin.pdf |binary
inst/unitTests/runit.mkinfit.R | 24 +--
man/endpoints.Rd | 8 -
man/geometric_mean.Rd |only
man/mkinresplot.Rd | 4
25 files changed, 192 insertions(+), 183 deletions(-)
Title: Improved access for blind useRs
Diff between BrailleR versions 0.8 dated 2013-08-26 and 0.9 dated 2014-06-27
Description: Blind useRs do not have access to the graphical output from R without printing the content of graph windows to an embosser of some kind. This is not as immediate as is required for efficient access to statistical output. The functions here are created so that blind people can make even better use of R.
Author: A. Jonathan R. Godfrey [aut, cre]
Maintainer: A. Jonathan R. Godfrey
BrailleR-0.8/BrailleR/R/OneWayANOVA.r |only
BrailleR-0.8/BrailleR/R/UniDesc.r |only
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BrailleR-0.8/BrailleR/man/UniDesc.Rd |only
BrailleR-0.9/BrailleR/DESCRIPTION | 17 +++++++++--------
BrailleR-0.9/BrailleR/MD5 | 14 ++++++--------
BrailleR-0.9/BrailleR/R/R2txtExtraJG.r | 13 +++++++------
BrailleR-0.9/BrailleR/R/VIMethod.r | 4 ++--
BrailleR-0.9/BrailleR/inst/NAMESPACE |only
BrailleR-0.9/BrailleR/man/BrailleR-package.Rd | 6 +++---
BrailleR-0.9/BrailleR/po |only
11 files changed, 27 insertions(+), 27 deletions(-)
Title: The multivariate normal and t distributions
Diff between mnormt versions 1.4-7 dated 2013-12-04 and 1.5-0 dated 2014-06-27
Description: This package provides functions for computing the density and the
distribution function of multivariate normal and multivariate "t" variates,
and for generating random vectors sampled from these distributions.
Probabilities are computed via a non-Monte Carlo method; different routines
are used for the case d=1, d=2, d>2, if d denotes the number of dimensions.
Author: Fortran code by Alan Genz, R code by Adelchi Azzalini
Maintainer: Adelchi Azzalini
mnormt-1.4-7/mnormt/src/a.out |only
mnormt-1.5-0/mnormt/COPYING |only
mnormt-1.5-0/mnormt/ChangeLog | 4 +
mnormt-1.5-0/mnormt/DESCRIPTION | 8 +--
mnormt-1.5-0/mnormt/MD5 | 18 ++++----
mnormt-1.5-0/mnormt/R/mnormt.R | 65 +++++++++++++++++++-----------
mnormt-1.5-0/mnormt/inst |only
mnormt-1.5-0/mnormt/man/dmnorm.Rd | 51 +++++++++++------------
mnormt-1.5-0/mnormt/man/dmt.Rd | 64 +++++++++++++----------------
mnormt-1.5-0/mnormt/man/mnormt-package.Rd |only
mnormt-1.5-0/mnormt/man/pd.solve.Rd | 2
mnormt-1.5-0/mnormt/src/sadmvnt.f | 16 +++++++
12 files changed, 130 insertions(+), 98 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-11-30 0.1-7
2010-10-29 0.1-6
2010-10-26 0.1-5
2010-01-04 0.1-3
2009-07-30 0.1-2
Title: Response surface analysis
Diff between RSA versions 0.9 dated 2014-02-14 and 0.9.3 dated 2014-06-27
Description: Advanced response surface analysis. The main function RSA computes
and compares several nested polynomial regression models (full polynomial,
shifted and rotated squared differences, rising ridge surfaces, basic
squared differences). The package provides plotting functions for 3d
wireframe surfaces, interactive 3d plots, and contour plots. Calculates
many surface parameters (a1 to a4, principal axes, stationary point,
eigenvalues) and provides standard, robust, or bootstrapped standard errors
and confidence intervals for them.
Author: Felix Schönbrodt
Maintainer: Felix Schönbrodt
RSA-0.9.3/RSA/DESCRIPTION | 10
RSA-0.9.3/RSA/MD5 | 54 ++--
RSA-0.9.3/RSA/NAMESPACE | 7
RSA-0.9.3/RSA/R/RSA.R | 337 ++++++++++++++----------------
RSA-0.9.3/RSA/R/RSA.ST.R | 83 ++++---
RSA-0.9.3/RSA/R/aictab.R |only
RSA-0.9.3/RSA/R/compare.R | 100 ++++----
RSA-0.9.3/RSA/R/confint.R | 20 -
RSA-0.9.3/RSA/R/demoRSA.R | 10
RSA-0.9.3/RSA/R/generics.R |only
RSA-0.9.3/RSA/R/getPar.R | 16 -
RSA-0.9.3/RSA/R/helpers.R | 40 +++
RSA-0.9.3/RSA/R/modeltree.R | 66 +++--
RSA-0.9.3/RSA/R/movieRSA.R | 2
RSA-0.9.3/RSA/R/plot.RSA.R | 413 ++++++++++++++++++++-----------------
RSA-0.9.3/RSA/R/print.RSA.R | 119 ++++++----
RSA-0.9.3/RSA/inst/NEWS.Rd |only
RSA-0.9.3/RSA/man/RSA.Rd | 110 +++------
RSA-0.9.3/RSA/man/RSA.ST.Rd | 86 ++-----
RSA-0.9.3/RSA/man/aictab.Rd |only
RSA-0.9.3/RSA/man/compare.Rd | 17 -
RSA-0.9.3/RSA/man/compare2.Rd |only
RSA-0.9.3/RSA/man/confint.RSA.Rd | 40 +--
RSA-0.9.3/RSA/man/demoRSA.Rd | 68 ++----
RSA-0.9.3/RSA/man/fitted.RSA.Rd |only
RSA-0.9.3/RSA/man/getPar.Rd | 22 -
RSA-0.9.3/RSA/man/modeltree.Rd | 23 +-
RSA-0.9.3/RSA/man/motcon.Rd | 34 ---
RSA-0.9.3/RSA/man/movieRSA.Rd | 40 +--
RSA-0.9.3/RSA/man/plotRSA.Rd | 254 +++++++---------------
RSA-0.9.3/RSA/man/residuals.RSA.Rd |only
RSA-0.9/RSA/inst/News.Rd |only
32 files changed, 950 insertions(+), 1021 deletions(-)
Title: Partial least squares Regression for generalized linear models
Diff between plsRglm versions 0.8.3 dated 2014-03-10 and 1.0.0 dated 2014-06-27
Description: This package provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand
Maintainer: Frederic Bertrand
plsRglm-0.8.3/plsRglm/man/PLS_glm.Rd |only
plsRglm-0.8.3/plsRglm/man/PLS_glm_formula.Rd |only
plsRglm-0.8.3/plsRglm/man/PLS_glm_kfoldcv.Rd |only
plsRglm-0.8.3/plsRglm/man/PLS_glm_kfoldcv_formula.Rd |only
plsRglm-0.8.3/plsRglm/man/PLS_lm.Rd |only
plsRglm-0.8.3/plsRglm/man/PLS_lm_formula.Rd |only
plsRglm-0.8.3/plsRglm/man/PLS_lm_kfoldcv.Rd |only
plsRglm-0.8.3/plsRglm/man/PLS_lm_kfoldcv_formula.Rd |only
plsRglm-0.8.3/plsRglm/man/plsRglm-package.Rd |only
plsRglm-1.0.0/plsRglm/DESCRIPTION | 13
plsRglm-1.0.0/plsRglm/MD5 | 229 -
plsRglm-1.0.0/plsRglm/NAMESPACE | 183 -
plsRglm-1.0.0/plsRglm/NEWS | 59
plsRglm-1.0.0/plsRglm/R/PLS_glm.R | 99
plsRglm-1.0.0/plsRglm/R/PLS_glm_formula.R | 107
plsRglm-1.0.0/plsRglm/R/PLS_glm_kfoldcv.R | 323 -
plsRglm-1.0.0/plsRglm/R/PLS_glm_kfoldcv_formula.R | 451 +-
plsRglm-1.0.0/plsRglm/R/PLS_lm.R | 1678 ++++-----
plsRglm-1.0.0/plsRglm/R/PLS_lm_formula.R | 1728 +++++-----
plsRglm-1.0.0/plsRglm/R/PLS_lm_kfoldcv.R | 306 -
plsRglm-1.0.0/plsRglm/R/PLS_lm_kfoldcv_formula.R | 351 +-
plsRglm-1.0.0/plsRglm/R/boxplots.bootpls.R | 79
plsRglm-1.0.0/plsRglm/R/coef.plsRglmmodel.R |only
plsRglm-1.0.0/plsRglm/R/coef.plsRmodel.R |only
plsRglm-1.0.0/plsRglm/R/cv.plsR.R |only
plsRglm-1.0.0/plsRglm/R/cv.plsRglm.R |only
plsRglm-1.0.0/plsRglm/R/cv.plsRglmmodel.default.R |only
plsRglm-1.0.0/plsRglm/R/cv.plsRglmmodel.formula.R |only
plsRglm-1.0.0/plsRglm/R/cv.plsRmodel.default.R |only
plsRglm-1.0.0/plsRglm/R/cv.plsRmodel.formula.R |only
plsRglm-1.0.0/plsRglm/R/cvtable.R |only
plsRglm-1.0.0/plsRglm/R/cvtable.plsR.R |only
plsRglm-1.0.0/plsRglm/R/cvtable.plsRglm.R |only
plsRglm-1.0.0/plsRglm/R/dicho.R | 2
plsRglm-1.0.0/plsRglm/R/kfolds2CVinfos_glm.R | 462 +-
plsRglm-1.0.0/plsRglm/R/kfolds2CVinfos_lm.R | 184 -
plsRglm-1.0.0/plsRglm/R/kfolds2Chisq.R | 16
plsRglm-1.0.0/plsRglm/R/kfolds2Chisqind.R | 14
plsRglm-1.0.0/plsRglm/R/kfolds2Mclassed.R | 252 -
plsRglm-1.0.0/plsRglm/R/kfolds2Mclassedind.R | 15
plsRglm-1.0.0/plsRglm/R/permcoefs.plsR.R | 22
plsRglm-1.0.0/plsRglm/R/permcoefs.plsRglm.R | 24
plsRglm-1.0.0/plsRglm/R/permcoefs.plsRglmnp.R | 30
plsRglm-1.0.0/plsRglm/R/permcoefs.plsRnp.R | 28
plsRglm-1.0.0/plsRglm/R/plot.coef.plsRmodel.R |only
plsRglm-1.0.0/plsRglm/R/plot.table.summary.cv.plsRglmmodel.R |only
plsRglm-1.0.0/plsRglm/R/plot.table.summary.cv.plsRmodel.R |only
plsRglm-1.0.0/plsRglm/R/plots.confints.bootpls.R | 174 -
plsRglm-1.0.0/plsRglm/R/plsRglmmodel.default.R | 28
plsRglm-1.0.0/plsRglm/R/plsRglmmodel.formula.R | 28
plsRglm-1.0.0/plsRglm/R/plsRmodel.default.R | 28
plsRglm-1.0.0/plsRglm/R/plsRmodel.formula.R | 28
plsRglm-1.0.0/plsRglm/R/predict.plsRglmmodel.R |only
plsRglm-1.0.0/plsRglm/R/predict.plsRmodel.R |only
plsRglm-1.0.0/plsRglm/R/print.coef.plsRglmmodel.R |only
plsRglm-1.0.0/plsRglm/R/print.coef.plsRmodel.R |only
plsRglm-1.0.0/plsRglm/R/print.cv.plsRglmmodel.R |only
plsRglm-1.0.0/plsRglm/R/print.cv.plsRmodel.R |only
plsRglm-1.0.0/plsRglm/R/print.plsRmodel.R | 38
plsRglm-1.0.0/plsRglm/R/summary.cv.plsRglmmodel.R |only
plsRglm-1.0.0/plsRglm/R/summary.cv.plsRmodel.R |only
plsRglm-1.0.0/plsRglm/R/tilt.bootpls.R | 52
plsRglm-1.0.0/plsRglm/R/tilt.bootplsglm.R | 59
plsRglm-1.0.0/plsRglm/build |only
plsRglm-1.0.0/plsRglm/demo/pls.R | 48
plsRglm-1.0.0/plsRglm/demo/pls_formula.R | 8
plsRglm-1.0.0/plsRglm/demo/pls_glm_family.R | 23
plsRglm-1.0.0/plsRglm/demo/pls_glm_logistic.R | 636 +--
plsRglm-1.0.0/plsRglm/demo/pls_glm_polr.R | 281 -
plsRglm-1.0.0/plsRglm/inst/CITATION | 72
plsRglm-1.0.0/plsRglm/inst/doc |only
plsRglm-1.0.0/plsRglm/man/AICpls.Rd | 114
plsRglm-1.0.0/plsRglm/man/CorMat.Rd | 14
plsRglm-1.0.0/plsRglm/man/Cornell.Rd | 67
plsRglm-1.0.0/plsRglm/man/PLS_glm_wvc.Rd | 28
plsRglm-1.0.0/plsRglm/man/PLS_lm_wvc.Rd | 24
plsRglm-1.0.0/plsRglm/man/XbordeauxNA.Rd | 59
plsRglm-1.0.0/plsRglm/man/XpineNAX21.Rd | 92
plsRglm-1.0.0/plsRglm/man/aic.dof.Rd | 118
plsRglm-1.0.0/plsRglm/man/aze.Rd | 119
plsRglm-1.0.0/plsRglm/man/aze_compl.Rd | 79
plsRglm-1.0.0/plsRglm/man/bootpls.Rd | 261 -
plsRglm-1.0.0/plsRglm/man/bootplsglm.Rd | 417 --
plsRglm-1.0.0/plsRglm/man/bordeaux.Rd | 60
plsRglm-1.0.0/plsRglm/man/boxplots.bootpls.Rd | 121
plsRglm-1.0.0/plsRglm/man/coef.plsRglmmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/coef.plsRmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/coefs.plsR.Rd | 77
plsRglm-1.0.0/plsRglm/man/coefs.plsRglm.Rd | 77
plsRglm-1.0.0/plsRglm/man/coefs.plsRglmnp.Rd | 81
plsRglm-1.0.0/plsRglm/man/coefs.plsRnp.rd | 79
plsRglm-1.0.0/plsRglm/man/confints.bootpls.Rd | 97
plsRglm-1.0.0/plsRglm/man/cv.plsR.Rd |only
plsRglm-1.0.0/plsRglm/man/cv.plsRglm.Rd |only
plsRglm-1.0.0/plsRglm/man/cvtable.Rd |only
plsRglm-1.0.0/plsRglm/man/fowlkes.Rd | 73
plsRglm-1.0.0/plsRglm/man/infcrit.dof.Rd | 82
plsRglm-1.0.0/plsRglm/man/kfolds2CVinfos_glm.Rd | 51
plsRglm-1.0.0/plsRglm/man/kfolds2CVinfos_lm.Rd | 36
plsRglm-1.0.0/plsRglm/man/kfolds2Chisq.Rd | 36
plsRglm-1.0.0/plsRglm/man/kfolds2Chisqind.Rd | 36
plsRglm-1.0.0/plsRglm/man/kfolds2Mclassed.Rd | 22
plsRglm-1.0.0/plsRglm/man/kfolds2Mclassedind.Rd | 22
plsRglm-1.0.0/plsRglm/man/kfolds2Press.Rd | 33
plsRglm-1.0.0/plsRglm/man/kfolds2Pressind.Rd | 32
plsRglm-1.0.0/plsRglm/man/kfolds2coeff.Rd | 34
plsRglm-1.0.0/plsRglm/man/loglikpls.Rd | 112
plsRglm-1.0.0/plsRglm/man/permcoefs.plsR.Rd | 77
plsRglm-1.0.0/plsRglm/man/permcoefs.plsRglm.Rd | 78
plsRglm-1.0.0/plsRglm/man/permcoefs.plsRglmnp.Rd | 83
plsRglm-1.0.0/plsRglm/man/permcoefs.plsRnp.Rd | 80
plsRglm-1.0.0/plsRglm/man/pine.Rd | 93
plsRglm-1.0.0/plsRglm/man/pine_full.Rd | 94
plsRglm-1.0.0/plsRglm/man/pine_sup.Rd | 96
plsRglm-1.0.0/plsRglm/man/plot.table.summary.cv.plsRglmmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/plot.table.summary.cv.plsRmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/plots.confints.bootpls.Rd | 250 -
plsRglm-1.0.0/plsRglm/man/plsR.Rd | 497 +-
plsRglm-1.0.0/plsRglm/man/plsR.dof.Rd | 94
plsRglm-1.0.0/plsRglm/man/plsRglm.Rd | 578 +--
plsRglm-1.0.0/plsRglm/man/predict.plsRglmmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/predict.plsRmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/print.coef.plsRglmmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/print.coef.plsRmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/print.cv.plsRglmmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/print.cv.plsRmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/signpred.Rd | 63
plsRglm-1.0.0/plsRglm/man/simul_data_UniYX.Rd | 133
plsRglm-1.0.0/plsRglm/man/simul_data_UniYX_binom.Rd | 183 -
plsRglm-1.0.0/plsRglm/man/simul_data_YX.Rd | 148
plsRglm-1.0.0/plsRglm/man/simul_data_complete.Rd | 145
plsRglm-1.0.0/plsRglm/man/summary.cv.plsRglmmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/summary.cv.plsRmodel.Rd |only
plsRglm-1.0.0/plsRglm/man/summary.plsRglmmodel.Rd | 4
plsRglm-1.0.0/plsRglm/man/summary.plsRmodel.Rd | 8
plsRglm-1.0.0/plsRglm/man/tilt.bootpls.Rd | 112
plsRglm-1.0.0/plsRglm/man/tilt.bootplsglm.Rd | 150
plsRglm-1.0.0/plsRglm/vignettes |only
138 files changed, 6729 insertions(+), 6948 deletions(-)
Title: R Interface for lp_solve version 5.5.2.0
Diff between lpSolveAPI versions 5.5.2.0-9 dated 2013-11-04 and 5.5.2.0-11 dated 2014-06-27
Description: The lpSolveAPI package provides an R interface for lp_solve,
a Mixed Integer Linear Programming (MILP) solver with support for pure
linear, (mixed) integer/binary, semi-continuous and special ordered sets
(SOS) models.
Author: lp_solve
Maintainer: Kjell Konis
DESCRIPTION | 13 ++++++-------
MD5 | 16 ++++++++--------
R/get.primal.solution.q | 9 +++++++--
inst/include/RlpSolveLink.h | 2 +-
man/get.primal.solution.Rd | 3 ++-
man/set.constr.type.Rd | 2 +-
src/RlpSolve.c | 1 +
src/RlpSolveLink.c | 20 ++++++++++++++++++++
src/lp_solve/lp_pricePSE.c | 3 +++
9 files changed, 49 insertions(+), 20 deletions(-)
Title: Study Design and Data Analysis in the presence of error-prone
diagnostic tests and self-reported outcomes
Diff between icensmis versions 1.2 dated 2014-06-25 and 1.2.1 dated 2014-06-27
Description: We consider studies in which information from error-prone
diagnostic tests or self-reports are gathered sequentially to determine the
occurrence of a silent event. Using a likelihood-based approach
incorporating the proportional hazards assumption, we provide functions to
estimate the survival distribution and covariate effects. We also provide
functions for power and sample size calculations for this setting.
Author: Xiangdong Gu and Raji Balasubramanian
Maintainer: Xiangdong Gu
icensmis-1.2.1/icensmis/DESCRIPTION | 6 +-
icensmis-1.2.1/icensmis/MD5 | 9 +--
icensmis-1.2.1/icensmis/R/RcppExports.R | 16 -----
icensmis-1.2.1/icensmis/R/icpower.R | 83 ++++++++++++++++++++++------
icensmis-1.2.1/icensmis/src/RcppExports.cpp | 74 ------------------------
icensmis-1.2/icensmis/src/powerfuncs.cpp |only
6 files changed, 73 insertions(+), 115 deletions(-)
Title: Phasing, sire imputation, recombination events identification
and pedigree reconstruction of half-sib families using SNP data
Diff between hsphase versions 1.2.6 dated 2014-03-28 and 2.0.0 dated 2014-06-27
Description: Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data
Author: Mohammad Ferdosi
Maintainer: Mohammad Ferdosi
hsphase-1.2.6/hsphase/src/ohg.cpp |only
hsphase-1.2.6/hsphase/src/ohg.h |only
hsphase-1.2.6/hsphase/src/ohp.cpp |only
hsphase-1.2.6/hsphase/src/ohp.h |only
hsphase-2.0.0/hsphase/DESCRIPTION | 19 ++--
hsphase-2.0.0/hsphase/MD5 | 112 +++++++++++-------------
hsphase-2.0.0/hsphase/NAMESPACE | 2
hsphase-2.0.0/hsphase/R/aio.R | 2
hsphase-2.0.0/hsphase/R/bmh.R | 2
hsphase-2.0.0/hsphase/R/co.R | 2
hsphase-2.0.0/hsphase/R/cs.R | 2
hsphase-2.0.0/hsphase/R/fastDist.R | 2
hsphase-2.0.0/hsphase/R/hh.R | 2
hsphase-2.0.0/hsphase/R/impute.R | 2
hsphase-2.0.0/hsphase/R/maf.R | 15 +++
hsphase-2.0.0/hsphase/R/namingInferedPedigree.R | 2
hsphase-2.0.0/hsphase/R/ohd.R | 2
hsphase-2.0.0/hsphase/R/ohg.R | 21 +---
hsphase-2.0.0/hsphase/R/ohplot.R | 2
hsphase-2.0.0/hsphase/R/para.R | 2
hsphase-2.0.0/hsphase/R/pogc.R | 15 +++
hsphase-2.0.0/hsphase/R/prCalus.R | 15 +++
hsphase-2.0.0/hsphase/R/prManual.R | 15 +++
hsphase-2.0.0/hsphase/R/rplot.R | 2
hsphase-2.0.0/hsphase/R/rpoh.R | 2
hsphase-2.0.0/hsphase/R/rpohhsphase.R | 2
hsphase-2.0.0/hsphase/R/simulateHalfsib.R | 2
hsphase-2.0.0/hsphase/R/ssp.R | 2
hsphase-2.0.0/hsphase/build/vignette.rds |binary
hsphase-2.0.0/hsphase/inst/CITATION | 111 +++++++++++++++++++++--
hsphase-2.0.0/hsphase/man/hsphase-package.Rd | 12 +-
hsphase-2.0.0/hsphase/man/ohg.Rd | 12 +-
hsphase-2.0.0/hsphase/src/FastDist.cpp | 2
hsphase-2.0.0/hsphase/src/FastDist.h | 2
hsphase-2.0.0/hsphase/src/MAF.cpp | 15 +++
hsphase-2.0.0/hsphase/src/MAF.h | 16 +++
hsphase-2.0.0/hsphase/src/Makevars | 2
hsphase-2.0.0/hsphase/src/Makevars.win | 3
hsphase-2.0.0/hsphase/src/Ohd.cpp | 2
hsphase-2.0.0/hsphase/src/Ohd.h | 2
hsphase-2.0.0/hsphase/src/TypeConversion.h | 1
hsphase-2.0.0/hsphase/src/block.cpp | 2
hsphase-2.0.0/hsphase/src/block.h | 4
hsphase-2.0.0/hsphase/src/block4Phase.cpp | 8 -
hsphase-2.0.0/hsphase/src/block4Phase.h | 2
hsphase-2.0.0/hsphase/src/co.cpp | 2
hsphase-2.0.0/hsphase/src/co.h | 2
hsphase-2.0.0/hsphase/src/diag.cpp | 2
hsphase-2.0.0/hsphase/src/diag.h | 2
hsphase-2.0.0/hsphase/src/hsp.cpp | 2
hsphase-2.0.0/hsphase/src/hsp.h | 2
hsphase-2.0.0/hsphase/src/main.cpp | 2
hsphase-2.0.0/hsphase/src/memory.cpp | 2
hsphase-2.0.0/hsphase/src/memory.h | 2
hsphase-2.0.0/hsphase/src/oh.cpp | 2
hsphase-2.0.0/hsphase/src/oh.h | 2
hsphase-2.0.0/hsphase/src/swDetect.cpp | 2
hsphase-2.0.0/hsphase/src/swDetect.h | 2
hsphase-2.0.0/hsphase/vignettes/hsphase.Rnw | 8 +
59 files changed, 324 insertions(+), 152 deletions(-)