Title: Tools for spatial data analysis
Diff between SpatialTools versions 0.5.7 dated 2014-03-10 and 0.5.8 dated 2014-07-02
Description: Tools for spatial data analysis. Emphasis on kriging. Provides functions for prediction and simulation. Intended to be relatively straightforward, fast, and flexible.
Author: Joshua French
Maintainer: Joshua French
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
NEWS | 2 ++
R/bayesian.R | 4 +++-
R/preamble.R | 2 +-
man/spLMPredictJoint.Rd | 2 +-
6 files changed, 16 insertions(+), 12 deletions(-)
Title: 3D visualization device system (OpenGL)
Diff between rgl versions 0.93.996 dated 2014-01-04 and 0.93.1098 dated 2014-07-02
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler
Maintainer: Duncan Murdoch
rgl-0.93.1098/rgl/DESCRIPTION | 11 +++--
rgl-0.93.1098/rgl/MD5 | 65 ++++++++++++++++----------------
rgl-0.93.1098/rgl/NAMESPACE | 7 ---
rgl-0.93.1098/rgl/R/device.R | 6 +-
rgl-0.93.1098/rgl/R/material.R | 4 +
rgl-0.93.1098/rgl/R/triangulate.R | 5 ++
rgl-0.93.1098/rgl/R/webGL.R | 1
rgl-0.93.1098/rgl/R/zzz.R | 14 +++++-
rgl-0.93.1098/rgl/configure | 8 +++
rgl-0.93.1098/rgl/configure.ac | 10 ++++
rgl-0.93.1098/rgl/demo/regression.r | 4 -
rgl-0.93.1098/rgl/demo/stereo.R | 2
rgl-0.93.1098/rgl/inst/NEWS | 11 +++++
rgl-0.93.1098/rgl/man/grid3d.Rd | 3 -
rgl-0.93.1098/rgl/man/primitive.Rd | 22 ++++++----
rgl-0.93.1098/rgl/man/selectpoints3d.Rd | 28 ++++++++++---
rgl-0.93.1098/rgl/src/Disposable.cpp | 4 -
rgl-0.93.1098/rgl/src/Material.cpp | 5 ++
rgl-0.93.1098/rgl/src/Material.hpp | 5 ++
rgl-0.93.1098/rgl/src/SphereMesh.hpp | 3 -
rgl-0.93.1098/rgl/src/Texture.cpp | 14 +++++-
rgl-0.93.1098/rgl/src/api.cpp | 25 ++++++------
rgl-0.93.1098/rgl/src/glErrors.cpp | 1
rgl-0.93.1098/rgl/src/glgui.cpp | 3 -
rgl-0.93.1098/rgl/src/init.cpp | 5 ++
rgl-0.93.1098/rgl/src/par3d.cpp | 2
rgl-0.93.1098/rgl/src/pixmap.cpp | 4 -
rgl-0.93.1098/rgl/src/platform.cpp |only
rgl-0.93.1098/rgl/src/platform.h |only
rgl-0.93.1098/rgl/src/pngpixmap.h | 8 ---
rgl-0.93.1098/rgl/src/rglmath.h | 7 +--
rgl-0.93.1098/rgl/src/rglview.h | 3 -
rgl-0.93.1098/rgl/src/scene.cpp | 8 ++-
rgl-0.93.1098/rgl/src/x11gui.cpp | 3 -
rgl-0.93.996/rgl/src/Surface.cpp.save |only
35 files changed, 192 insertions(+), 109 deletions(-)
Title: Bootstrapping for Propensity Score Analysis
Diff between PSAboot versions 1.0 dated 2013-11-26 and 1.1 dated 2014-07-02
Description: Bootstrapping functions for propensity score analysis and matching.
Author: Jason Bryer
Maintainer: Jason Bryer
DESCRIPTION | 16 ---
MD5 | 92 +++++++++--------
NAMESPACE | 5
NEWS | 7 +
R/PSAboot.R | 47 +++++---
R/balance.R | 11 +-
R/balance.boxplot.R | 4
R/balance.plot.R | 12 +-
R/balance.print.R | 7 -
R/boxplot.PSAboot.R | 61 +++++++++--
R/hist.PSAboot.R | 1
R/plot.PSAboot.R | 1
R/print.PSAboot.R | 1
R/quantiles.R |only
R/summary.PSAboot.R | 10 +
build/vignette.rds |binary
demo/PSAbootTutoring.R | 22 ++--
inst/doc/PSAboot.R | 31 -----
inst/doc/PSAboot.Rmd | 10 -
inst/doc/PSAboot.html | 192 +++++++++++++++++++++---------------
man/PSAboot-package.Rd | 3
man/PSAboot.Rd | 121 +++++++++-------------
man/as.data.frame.PSAbootSummary.Rd | 15 +-
man/balance.Rd | 37 +++---
man/balance.matching.Rd | 15 +-
man/balance.matchit.Rd | 15 +-
man/boot.ctree.Rd | 29 ++---
man/boot.matching.Rd | 30 ++---
man/boot.matchit.Rd | 24 ++--
man/boot.rpart.Rd | 29 ++---
man/boot.strata.Rd | 46 ++++----
man/boxplot.PSAboot.Rd | 29 ++++-
man/boxplot.PSAboot.balance.Rd | 27 ++---
man/getPSAbootMethods.Rd |only
man/hist.PSAboot.Rd | 10 -
man/matrixplot.Rd | 7 -
man/pisa.psa.cols.Rd | 5
man/pisalux.Rd | 26 ++--
man/pisausa.Rd | 26 ++--
man/plot.PSAboot.Rd | 31 ++---
man/plot.PSAboot.balance.Rd | 27 ++---
man/print.PSAboot.Rd | 9 -
man/print.PSAboot.balance.Rd | 19 +--
man/print.PSAbootSummary.Rd | 12 +-
man/psa.strata.Rd | 19 +--
man/q25.Rd |only
man/q75.Rd |only
man/summary.PSAboot.Rd | 11 +-
vignettes/PSAboot.Rmd | 10 -
49 files changed, 612 insertions(+), 550 deletions(-)
Title: Digital PCR Analysis
Diff between dpcR versions 0.1.2 dated 2014-06-30 and 0.1.2-1 dated 2014-07-02
Description: Analysis, visualisation and simulation of digital PCR experiments.
Author: Michal Burdukiewicz, Stefan Roediger
Maintainer: Michal Burdukiewicz
DESCRIPTION | 6 -
MD5 | 4
man/test_ratio.Rd | 228 +++++++++++++++++++++++++++---------------------------
3 files changed, 119 insertions(+), 119 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-01 0.9-93
2013-11-30 0.9-92
2013-11-01 0.9-91
2013-09-23 0.9-9
2013-04-10 0.9-8
2013-01-31 0.9-7
2012-12-02 0.9-5
2012-11-28 0.9-4
Title: R functions for working with spatial data.
Diff between spatial.tools versions 1.3.8 dated 2014-03-20 and 1.4.8 dated 2014-07-02
Description: Spatial functions meant to enhance the core functionality of the
package "raster", including a parallel processing engine for use with
rasters.
Author: Jonathan Asher Greenberg
Maintainer: Jonathan Asher Greenberg
DESCRIPTION | 10
MD5 | 80 +++----
NAMESPACE | 2
R/build_raster_header.R | 18 +
R/create_blank_raster.R | 14 -
R/dataType_converter.R | 32 +-
R/focal_hpc.R | 72 +++---
R/getValuesBlock_enhanced.R | 60 ++++-
R/predict_rasterEngine.R | 121 +++++++++-
R/rasterEngine.R | 12 -
man/add_leading_zeroes.Rd | 12 -
man/bbox_to_SpatialPolygons.Rd | 17 -
man/binary_image_write.Rd | 26 --
man/brickstack_to_raster_list.Rd | 6
man/build_raster_header.Rd | 41 +--
man/create_blank_raster.Rd | 81 +++----
man/fix_extent.Rd | 10
man/focal_hpc.Rd | 204 ++++++------------
man/getValuesBlock_enhanced.Rd | 33 +-
man/getValuesBlock_stackfix.Rd | 30 +-
man/is.Raster.Rd | 6
man/list.raster.files.Rd | 39 +--
man/modify_raster_margins.Rd | 17 -
man/predict_rasterEngine.Rd | 29 +-
man/projectRaster_rigorous.Rd | 49 +---
man/rasterEngine.Rd | 425 ++++++++++++++++----------------------
man/raster_to_GLT.Rd | 11
man/raster_to_IGM.Rd | 14 -
man/raster_to_filenames.Rd | 12 -
man/remove_file_extension.Rd | 6
man/sfQuickInit.Rd | 17 -
man/sfQuickStop.Rd | 14 -
man/spatial_sync_raster.Rd | 39 +--
man/spatial_sync_vector.Rd | 11
man/subset_raster_by_names.Rd | 9
man/tahoe_highrez.tif.Rd | 4
man/tahoe_highrez_training.Rd | 1
man/tahoe_lidar_bareearth.tif.Rd | 4
man/tahoe_lidar_highesthit.tif.Rd | 4
man/which.max.simple.Rd | 20 -
man/which.min.simple.Rd | 20 -
41 files changed, 810 insertions(+), 822 deletions(-)
Title: tools for working with ICD-9 codes, and finding comorbidities
Diff between icd9 versions 0.1.1 dated 2014-06-23 and 0.2.1 dated 2014-07-02
Description: This package allows accurate manipulation, validation and
comparison of ICD-9-CM (clinical modification) codes. Although ICD-9 codes
appear numeric, this is not the case, since trailing zeroes, and a mixture
of decimal and non-decimal "short" format codes exist. Tools to map ICD-9
codes to co-morbidities are also provided, with mappings from Quan (Deyo
and Elixhauser versions), Elixhauser and AHRQ included.
Author: Jack O. Wasey [aut, cre]
Maintainer: Jack O. Wasey
icd9-0.1.1/icd9/README |only
icd9-0.1.1/icd9/man/icd9ExpandBaseCodeDecimal.Rd |only
icd9-0.1.1/icd9/man/icd9ExpandBaseCodeShort.Rd |only
icd9-0.1.1/icd9/man/icd9ExtractPartsDecimal.Rd |only
icd9-0.1.1/icd9/man/icd9ExtractPartsShort.Rd |only
icd9-0.1.1/icd9/man/icd9ValidMappingShort.Rd |only
icd9-0.2.1/icd9/DESCRIPTION | 12
icd9-0.2.1/icd9/MD5 | 133 +-
icd9-0.2.1/icd9/NAMESPACE | 17
icd9-0.2.1/icd9/NEWS | 10
icd9-0.2.1/icd9/R/benchmark.R | 30
icd9-0.2.1/icd9/R/comorbid.R | 258 +----
icd9-0.2.1/icd9/R/datadocs.R | 66 +
icd9-0.2.1/icd9/R/icd9-package.R | 74 +
icd9-0.2.1/icd9/R/icd9.R | 685 +++++++++------
icd9-0.2.1/icd9/R/parse.R |only
icd9-0.2.1/icd9/R/sas.R | 77 +
icd9-0.2.1/icd9/R/util.R | 13
icd9-0.2.1/icd9/R/valid.R | 183 +++-
icd9-0.2.1/icd9/README.md |only
icd9-0.2.1/icd9/data/ahrqComorbid.RData |binary
icd9-0.2.1/icd9/data/ahrqComorbidAll.RData |binary
icd9-0.2.1/icd9/data/elixhauserComorbid.RData |only
icd9-0.2.1/icd9/data/icd9CmDesc.RData |binary
icd9-0.2.1/icd9/data/quanDeyoComorbid.RData |only
icd9-0.2.1/icd9/data/quanElixhauserComorbid.RData |only
icd9-0.2.1/icd9/inst/doc/icd9.R | 53 +
icd9-0.2.1/icd9/inst/doc/icd9.Rnw | 93 +-
icd9-0.2.1/icd9/inst/doc/icd9.pdf |binary
icd9-0.2.1/icd9/inst/extdata/ICD9_E_Charlson.sas.txt |only
icd9-0.2.1/icd9/man/ahrqComorbid.Rd | 2
icd9-0.2.1/icd9/man/ahrqComorbidAll.Rd | 6
icd9-0.2.1/icd9/man/elixhauserComorbid.Rd |only
icd9-0.2.1/icd9/man/getInvalidDecimalIcd9.Rd | 3
icd9-0.2.1/icd9/man/grapes-i9mj-grapes.Rd | 25
icd9-0.2.1/icd9/man/icd9-package.Rd | 52 +
icd9-0.2.1/icd9/man/icd9AddLeadingZeroesDecimal.Rd | 3
icd9-0.2.1/icd9/man/icd9AddLeadingZeroesMajor.Rd | 13
icd9-0.2.1/icd9/man/icd9AddLeadingZeroesShort.Rd | 13
icd9-0.2.1/icd9/man/icd9ChildrenDecimal.Rd |only
icd9-0.2.1/icd9/man/icd9ChildrenShort.Rd |only
icd9-0.2.1/icd9/man/icd9CondenseShort.Rd |only
icd9-0.2.1/icd9/man/icd9CondenseToExplainShort.Rd |only
icd9-0.2.1/icd9/man/icd9DecimalToParts.Rd |only
icd9-0.2.1/icd9/man/icd9DecimalToShort.Rd | 33
icd9-0.2.1/icd9/man/icd9DropZeroFromDecimal.Rd | 33
icd9-0.2.1/icd9/man/icd9ExpandMinor.Rd | 16
icd9-0.2.1/icd9/man/icd9ExpandRangeDecimal.Rd | 40
icd9-0.2.1/icd9/man/icd9ExpandRangeShort.Rd | 42
icd9-0.2.1/icd9/man/icd9Explain.Rd | 30
icd9-0.2.1/icd9/man/icd9PartsRecompose.Rd | 6
icd9-0.2.1/icd9/man/icd9ShortToDecimal.Rd | 27
icd9-0.2.1/icd9/man/icd9ShortToParts.Rd |only
icd9-0.2.1/icd9/man/icd9SortShort.Rd | 24
icd9-0.2.1/icd9/man/icd9SubsequentMinors.Rd | 19
icd9-0.2.1/icd9/man/icd9Valid.Rd |only
icd9-0.2.1/icd9/man/icd9ValidDecimal.Rd | 13
icd9-0.2.1/icd9/man/icd9ValidMajor.Rd |only
icd9-0.2.1/icd9/man/icd9ValidMapping.Rd |only
icd9-0.2.1/icd9/man/icd9ValidNaWarnStop.Rd |only
icd9-0.2.1/icd9/man/icd9ValidShort.Rd | 13
icd9-0.2.1/icd9/man/icd9WarnStopMessage.Rd |only
icd9-0.2.1/icd9/man/parseAhrqSas.Rd | 34
icd9-0.2.1/icd9/man/parseElixhauser.Rd |only
icd9-0.2.1/icd9/man/parseIcd9Cm.Rd | 2
icd9-0.2.1/icd9/man/parseQuanDeyoSas.Rd |only
icd9-0.2.1/icd9/man/parseQuanElixhauser.Rd |only
icd9-0.2.1/icd9/man/quanDeyoComorbid.Rd |only
icd9-0.2.1/icd9/man/quanElixhauserComorbid.Rd |only
icd9-0.2.1/icd9/man/sasDropOtherAssignment.Rd | 1
icd9-0.2.1/icd9/man/sasExtractLetStrings.Rd |only
icd9-0.2.1/icd9/man/sasFormatExtract.Rd | 2
icd9-0.2.1/icd9/man/sasParseAssignments.Rd | 3
icd9-0.2.1/icd9/man/stopIfInvalidIcd9.Rd | 19
icd9-0.2.1/icd9/man/strMultiMatch.Rd | 4
icd9-0.2.1/icd9/man/strip.Rd | 2
icd9-0.2.1/icd9/tests/testthat/test-comorbid.R |only
icd9-0.2.1/icd9/tests/testthat/test-convert.R |only
icd9-0.2.1/icd9/tests/testthat/test-icd9.R | 848 +++++--------------
icd9-0.2.1/icd9/tests/testthat/test-ranges.R |only
icd9-0.2.1/icd9/tests/testthat/test-sas.R | 70 -
icd9-0.2.1/icd9/tests/testthat/test-util.R |only
icd9-0.2.1/icd9/tests/testthat/test-validation.R |only
icd9-0.2.1/icd9/vignettes/icd9-concordance.tex | 7
icd9-0.2.1/icd9/vignettes/icd9.Rnw | 93 +-
85 files changed, 1820 insertions(+), 1382 deletions(-)
Title: Growth charts via regression quantiles
Diff between quantregGrowth versions 0.1-2 dated 2013-10-29 and 0.1-3 dated 2014-07-02
More information about quantregGrowth at CRAN
Description: Fits non-crossing regression quantiles as a function of linear covariates and a smooth term via B-spline with quadratic penalty.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo
DESCRIPTION | 8 ++++----
MD5 | 28 ++++++++++++++--------------
NEWS | 15 +++++++++++++--
R/gcrq.R | 7 ++++---
R/gcrq.rq.cv.R | 4 ++--
R/ncross.rq.fitB.R | 29 +++++++++++++++++++++++++----
R/ncross.rq.fitX.R | 31 +++++++++++++++++++++++++------
R/ncross.rq.fitXB.R | 30 +++++++++++++++++++++++++-----
R/plot.gcrq.R | 42 ++++++++++++++++++++++++++++--------------
R/summary.gcrq.R | 22 +++++++++++++++-------
inst/CITATION | 6 +++---
man/gcrq.Rd | 14 ++++++++++----
man/plot.gcrq.Rd | 9 +++++++--
man/ps.Rd | 7 ++++---
man/quantregGrowth-package.Rd | 10 +++++-----
15 files changed, 184 insertions(+), 78 deletions(-)
Permanent link
Title: plotting custom sequence logos
Diff between RWebLogo versions 1.0.1 dated 2014-04-18 and 1.0.2 dated 2014-07-02
Description: RWebLogo is a wrapper for the WebLogo python package
that allows generating of customised sequence logos. Sequence logos are
graphical representations of the sequence conservation of nucleotides (in a
strand of DNA/RNA) or amino acids (in protein sequences). Each logo
consists of stacks of symbols, one stack for each position in the sequence.
The overall height of the stack indicates the sequence conservation at that
position, while the height of symbols within the stack indicates the
relative frequency of each amino or nucleic acid at that position. In
general, a sequence logo provides a richer and more precise description of,
for example, a binding site, than would a consensus sequence.
Author: Omar Wagih
Maintainer: Omar Wagih
DESCRIPTION | 13 +-
MD5 | 19 ++--
NAMESPACE | 6 -
R/RWebLogo.R | 109 ++++++++++++++++++-----
build/BUILD.R | 8 -
build/logo.pdf |only
build/logo.png |only
inst/extdata/example_logo.eps |only
inst/extdata/weblogo-3.3/weblogolib/__init__.py | 27 ++++-
inst/extdata/weblogo-3.3/weblogolib/__init__.pyc |binary
man/plotlogo.Rd | 9 +
man/weblogo.Rd | 6 -
12 files changed, 145 insertions(+), 52 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies
Diff between PowerTOST versions 1.1-11 dated 2014-04-30 and 1.1-12 dated 2014-07-02
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations
based on non-inferiority t-test. This is not a TOST procedure but
eventually useful if the question of 'non-superiority' must be
evaluated.
The power and sample size calculations based on non-inferiority
test may also performed via 'expected' power in case of uncertain
(estimated) variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to
calculate power and sample size for the BE decision via scaled
(widened) BE acceptance limits based on simulations.
Contains functions power.RSABE() and sampleN.RSABE()
to calculate power and sample size for the BE decision via
reference scaled ABE criterion according to the FDA procedure
based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA()
to calculate power and sample size for the BE decision via
the FDA procedure for NTID's based on simulations.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [ctb]
Maintainer: Detlew Labes
PowerTOST-1.1-11/PowerTOST/inst/doc/BE_power_sample_size_excerpt_V05.pdf |only
PowerTOST-1.1-12/PowerTOST/DESCRIPTION | 8 -
PowerTOST-1.1-12/PowerTOST/MD5 | 18 +-
PowerTOST-1.1-12/PowerTOST/NAMESPACE | 2
PowerTOST-1.1-12/PowerTOST/NEWS | 8 +
PowerTOST-1.1-12/PowerTOST/R/SampleSize.R | 67 +++++++++-
PowerTOST-1.1-12/PowerTOST/R/power.R | 8 -
PowerTOST-1.1-12/PowerTOST/inst/doc/BE_power_sample_size_excerpt_V06.pdf |only
PowerTOST-1.1-12/PowerTOST/man/power.RSABE.Rd | 7 -
PowerTOST-1.1-12/PowerTOST/man/power.TOST.Rd | 7 -
PowerTOST-1.1-12/PowerTOST/man/power.scABEL.Rd | 28 +---
11 files changed, 111 insertions(+), 42 deletions(-)
Title: Power and Sample size distribution of 2-stage BE studies via
simulations
Diff between Power2Stage versions 0.1-1 dated 2014-05-08 and 0.1-3 dated 2014-07-02
Description: Contains functions to calculate power and sample size distribution
of 2-stage BE studies with a 2x2 crossover design according to
Potvin et.al. / Montague et. al. modified to include a futility Nmax
and modified to do the sample size estimation step with PE and mse
of stage 1 as well as the power calculation steps according to
Karalis & Macheras.
The third function calculates power and sample size distribution
of 2-stage BE studies with a futility criterion for the point
estimator of T/R from stage 1.
The fourth function calculates power of non-adaptive group
sequential (2-stage) BE studies.
The fifth function calculates power and sample size distribution
of 2-stage BE studies in 2 parallel groups.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [ctb]
Maintainer: Detlew Labes
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NEWS | 13 +++++++++++--
R/power_2stage.R | 5 +++--
R/sampsiz.R | 35 +++++++++++++++++++++++++++++++----
man/power.2stage.Rd | 6 ++++--
man/power.2stage.p.Rd | 4 ++--
7 files changed, 61 insertions(+), 22 deletions(-)
Title: Performing continuous-time microsimulation
Diff between MicSim versions 1.0.5 dated 2014-06-23 and 1.0.6 dated 2014-07-02
Description: The package performs continuous-time microsimulation for population projections.
Author: Sabine Zinn
Maintainer: Sabine Zinn
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/convertToLong.r | 2 +-
inst/NEWS.Rd | 5 +++++
man/MicSim-package.Rd | 4 ++--
5 files changed, 16 insertions(+), 11 deletions(-)
Title: Log-concave Density Estimation in Arbitrary Dimensions
Diff between LogConcDEAD versions 1.5-8 dated 2013-11-27 and 1.5-9 dated 2014-07-02
Description: Computes a log-concave (maximum likelihood) estimator for
i.i.d. data in any number of dimensions.
Author: Madeleine Cule, Robert Gramacy, Richard Samworth, Yining Chen
Maintainer: Yining Chen
DESCRIPTION | 8 ++++----
MD5 | 28 ++++++++++++++--------------
NEWS | 6 +++++-
build/vignette.rds |binary
src/geom2.c | 2 +-
src/global.c | 4 ++--
src/io.c | 6 +++---
src/mem.h | 3 ++-
src/merge.c | 2 +-
src/poly.c | 41 +++++++++++++++++++++--------------------
src/poly2.c | 2 +-
src/qhull.c | 2 +-
src/qset.c | 2 +-
src/sigmaeffw.c | 1 -
src/solvoptweights.c | 8 ++++----
15 files changed, 60 insertions(+), 55 deletions(-)
Title: Amdahl's profiler, directed optimization made easy.
Diff between aprof versions 0.2 dated 2014-05-14 and 0.2.1 dated 2014-07-02
Description: Assists the evaluation of whether and
where to focus code optimization, using Amdahl's law and visual aids
based on line profiling. Amdahl's profiler organises profiling output
files (will soon include memory profiling) in a visually appealing
way. It is meant to help to balance development vs. execution time
by helping to identify the most promising sections of code to
optimize and projecting potential gains. The package is an addition
to R's standard profiling tools and is not a wrapper for them.
Author: Marco D. Visser
Maintainer: Marco D. Visser
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
NAMESPACE | 2 ++
R/aprof.R | 13 ++++++-------
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Title: an open-source R package for omics data integrative analysis in
terms of network, evolution and ontology
Diff between dnet versions 1.0.4 dated 2014-06-05 and 1.0.5 dated 2014-07-02
Description: The 'dnet' package is initiated to fill in the need of an open-source tool for high-throughput omics data in an integrative manner in terms of network, evolution and ontology. More specifically, dnet intends to analyse the biological network whose nodes/genes are associated with digitised information such as expression levels across samples. To help make sense of identified networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for semantic similarity calculation between ontology terms (and genes), and network affinity calculation using Random Walk with Restart; both can be done via high-performance parallel computing. In summary, dnet aims to deliver an eye-intuitive tool with rich visuals but less inputs.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang
DESCRIPTION | 8 -
MD5 | 38 +++----
R/dDAGgeneSim.r | 4
R/dDAGtermSim.r | 2
R/dEnricher.r | 16 ++-
R/dNetReorder.r | 18 +++
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Title: Graph estimation based on birth-death MCMC approach
Diff between BDgraph versions 2.8 dated 2014-05-29 and 2.9 dated 2014-07-02
Description: This package provides a Bayesian methodology for structure learning in undirected graphical models. Our Bayesian methodology is based on birth-death Markov chain Monte Carlo (BDMCMC) algorithm which is the main function with the name 'bdgraph'. The main target of this package is high-dimensional data analysis wherein usually p >> n. The computation is memory-optimized using the sparse matrix output.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi
DESCRIPTION | 10
MD5 | 19
NAMESPACE | 43 -
R/BDgraph.R | 1269 +++++++++---------------------------------------
man/BDgraph-internal.Rd | 11
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More information about FunctionalNetworks at CRAN
Permanent link
Title: Data sets, etc. for the text "Using R for Introductory
Statistics", second edition
Diff between UsingR versions 0.1-18 dated 2012-04-03 and 2.0-1 dated 2014-07-02
Description: A collection of data sets to accompany the
textbook "Using R for Introductory Statistics," second
edition.
Author: John Verzani
Maintainer: John Verzani
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Title: Semi Parametric Distribution
Diff between spd versions 1.9 dated 2013-04-09 and 2.0-0 dated 2014-07-02
Description: Semi Parametric Piecewise Distribution
Author: alexios ghalanos
Maintainer: alexios ghalanos
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Title: Semiparametric Bivariate Probit Modelling
Diff between SemiParBIVProbit versions 3.2-10 dated 2014-02-14 and 3.2-11 dated 2014-07-02
More information about SemiParBIVProbit at CRAN
Description: Routine for fitting bivariate probit models with semiparametric predictors (including linear and nonlinear effects) in the presence of correlated error equations, endogeneity or sample selection. Bivariate copula models are also supported.
Author: Giampiero Marra
Maintainer: Giampiero Marra
ChangeLog | 4
DESCRIPTION | 14 -
MD5 | 80 +++++------
NAMESPACE | 3
R/AT.r | 102 +++++++++++++-
R/SemiParBIVProbit.fit.R | 20 +-
R/SemiParBIVProbit.fit.post.r | 67 ++++++++-
R/SemiParBIVProbit.r | 48 ++++--
R/adjCov.r | 2
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R/copgHs.r | 202 +++++++++++++++++++++++++++
R/est.prev.r | 2
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Permanent link
Title: hierarchical Bayesian species distribution models
Diff between hSDM versions 1.0 dated 2012-12-04 and 1.4 dated 2014-07-02
Description: hSDM is an R package for estimating parameters of hierarchical Bayesian species distribution models. Such models allow interpreting the observations (occurrence and abundance of a species) as a result of several hierarchical processes including ecological processes (habitat suitability, spatial dependence and anthropogenic disturbance) and observation processes (species detectability). Hierarchical species distribution models are essential for accurately characterizing the environmental response of species, predicting their probability of occurrence, and assessing uncertainty in the model results.
Author: Ghislain Vieilledent, Cory Merow, Jérôme Guélat, Andrew M. Latimer, Marc Kéry, Alan E. Gelfand, Adam M. Wilson, Frédéric Mortier and John A. Silander Jr.
Maintainer: Ghislain Vieilledent
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hSDM-1.4/hSDM/src/hSDM.poisson.c | 103 ++++--
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Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Diff between heplots versions 1.0-11 dated 2013-08-21 and 1.0-12 dated 2014-07-02
Description: Provides HE plot functions for visualizing hypothesis tests in multivariate linear models. They represents sums-of-squares-and-products matrices for linear hypotheses and for error using ellipses (in two dimensions) and ellipsoids (in three dimensions).
Author: John Fox [aut], Michael Friendly [aut, cre], Georges Monette [ctb]
Maintainer: Michael Friendly
DESCRIPTION | 17 +--
MD5 | 145 ++++++++++++++++----------------
NAMESPACE | 5 +
NEWS | 5 +
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data/RootStock.rda |binary
data/Sake.RData |binary
data/Skulls.RData |binary
data/SocGrades.RData |binary
data/VocabGrowth.rda |binary
data/WeightLoss.RData |binary
data/schooldata.RData |binary
man/Adopted.Rd | 8 -
man/Bees.Rd | 1
man/FootHead.Rd | 1
man/Hernior.Rd | 4
man/heplot-package.Rd | 4
vignettes/fig/plot-Ortho-fm1.pdf |binary
vignettes/fig/plot-Ortho-fm3.pdf |binary
vignettes/fig/plot-grades-can-class.pdf |binary
vignettes/fig/plot-grades-can-gpa.pdf |binary
vignettes/fig/plot-grades-can-sex.pdf |binary
vignettes/fig/plot-grades-pairs.pdf |binary
vignettes/fig/plot-hern-can-age.pdf |binary
vignettes/fig/plot-hern-can-build.pdf |binary
vignettes/fig/plot-hern-can-cardiac.pdf |binary
vignettes/fig/plot-hern-can-pstat.pdf |binary
vignettes/fig/plot-hern-pairs.pdf |binary
vignettes/fig/plot-jury-can1.pdf |binary
vignettes/fig/plot-jury-mod1-HE.pdf |binary
vignettes/fig/plot-jury-mod1-pairs.pdf |binary
vignettes/fig/plot-jury-mod2-HE.pdf |binary
vignettes/fig/plot-jury-mod3-eff.pdf |binary
vignettes/fig/plot-obk-HE1.pdf |binary
vignettes/fig/plot-obk-HE2.pdf |binary
vignettes/fig/plot-obk-HE3.pdf |binary
vignettes/fig/plot-obk2-HE1.pdf |binary
vignettes/fig/plot-obk2-HE2.pdf |binary
vignettes/fig/plot-ortho-HE.pdf |binary
vignettes/fig/plot-ortho-nonlin-HE.pdf |binary
vignettes/fig/plot-ortho-xyplot1.pdf |binary
vignettes/fig/plot-ortho-xyplot2.pdf |binary
vignettes/fig/plot-plastic2.pdf |binary
vignettes/fig/plot-rohwer-HE1.pdf |binary
vignettes/fig/plot-rohwer-HE2.pdf |binary
vignettes/fig/plot-rohwer-HE3.pdf |binary
vignettes/fig/plot-rohwer-HE4.pdf |binary
vignettes/fig/plot-skulls-HE-pairs.pdf |binary
vignettes/fig/plot-skulls-bwplot.pdf |binary
vignettes/fig/plot-skulls-can2.pdf |binary
vignettes/fig/plot-skulls4.pdf |binary
vignettes/fig/plot-voc1.pdf |binary
vignettes/fig/plot-voc4.pdf |binary
vignettes/fig/plot-voc8.pdf |binary
vignettes/fig/plot-wl-HE1.pdf |binary
vignettes/fig/plot-wl-HE2.pdf |binary
vignettes/fig/plot-wl-HE3.pdf |binary
vignettes/fig/plot-wl-means.pdf |binary
74 files changed, 101 insertions(+), 91 deletions(-)
Title: An algorithm for reducing errors-in-variable bias in simple
linear regression
Diff between eive versions 1.0 dated 2012-12-07 and 2.0 dated 2014-07-02
Description: EIVE performs a compact genetic algorithm search to reduce errors-in-variables bias in linear regression.
Author: Mehmet Hakan Satman (PhD), Erkin Diyarbakirlioglu (PhD)
Maintainer: Mehmet Hakan Satman
eive-1.0/eive/R/cga.R |only
eive-1.0/eive/man/f.Rd |only
eive-2.0/eive/DESCRIPTION | 15 ++--
eive-2.0/eive/MD5 | 13 +--
eive-2.0/eive/NAMESPACE | 4 -
eive-2.0/eive/R/RcppExports.R |only
eive-2.0/eive/R/eive.R | 138 ++++++++++++++++++--------------------
eive-2.0/eive/man/eive-package.Rd | 4 -
eive-2.0/eive/src |only
9 files changed, 87 insertions(+), 87 deletions(-)
Title: Some Tools for Survey Statistics in Educational Assessment,
Developed by BIFIE
Diff between BIFIEsurvey versions 0.1-57 dated 2014-06-30 and 0.1-61 dated 2014-07-02
Description:
Some Tools for Survey Statistics in Educational Assessment,
Developed by BIFIE.
Bundesinstitut fuer Bildungsforschung,
Entwicklung und Innovation im oesterreichischen Schulwesen;
Federal Institute for Educational Research, Innovation and
Development of the Austrian School System;
Salzburg, Austria.
Author: BIFIE
Maintainer: Alexander Robitzsch
DESCRIPTION | 8 +-
MD5 | 20 +++--
NAMESPACE | 4 -
R/BIFIE.by.R |only
inst/NEWS | 4 -
man/BIFIE.by.Rd |only
man/BIFIE.data.jack.Rd | 2
man/BIFIE.freq.Rd | 2
man/BIFIE.waldtest.Rd | 9 +-
man/BIFIEsurvey-package.Rd | 26 ++++---
src/univar.cpp | 156 +++++++++++++++++++++++++++++++++++++++++++++
src/univar_helpers.h | 2
12 files changed, 198 insertions(+), 35 deletions(-)
Title: function collection related to hydrology, zooming and shapefiles
Diff between berryFunctions versions 1.3 dated 2014-06-08 and 1.4 dated 2014-07-02
More information about berryFunctions at CRAN
Description: collection of functions to: zoom in X11 graphics and ESRI shapefile plots, use the unit hydrograph in a linear storage cascade, compare several extreme-value-distributions at return periods, draw horizontal histograms and scatterplots colored by 3rd dimension, convert lists to data.frames, fit multiple functions (power, reciprocal, exponential, logarithmic, polynomial, rational) by regression.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool
ChangeLog | 41 +++
DESCRIPTION | 8
MD5 | 50 ++--
R/extremeStatLmom.r | 342 ++++++++++++++--------------
R/linLogTrans.R |only
R/lsc.r | 150 ++++++------
inst |only
man/berryFunctions-package.Rd | 504 +++++++++++++++++++++---------------------
man/circle.Rd | 54 ++--
man/climateGraph.Rd | 286 +++++++++++------------
man/colPoints.Rd | 188 +++++++--------
man/distance.Rd | 55 ++--
man/extremeStatLmom.Rd | 407 ++++++++++++++++++---------------
man/funnelPlot.Rd | 232 +++++++++----------
man/linLogTrans.Rd |only
man/linReg.Rd | 92 +++----
man/lsc.Rd | 228 +++++++++----------
man/mReg.Rd | 427 +++++++++++++++++------------------
man/monthLabs.Rd | 80 +++---
man/pointZoom.Rd | 83 +++---
man/randomPoints.Rd | 76 +++---
man/rsquare.Rd | 62 ++---
man/showAttribute.Rd | 2
man/superPos.Rd | 170 +++++++-------
man/tableColVal.Rd | 104 ++++----
man/textField.Rd | 215 +++++++++--------
26 files changed, 1983 insertions(+), 1873 deletions(-)
Permanent link
Title: Bayesian analysis for exponential random graph models
Diff between Bergm versions 2.7 dated 2014-06-20 and 2.8 dated 2014-07-02
Description: Set of tools to analyse Bayesian exponential random graph models
Author: Alberto Caimo and Nial Friel
Maintainer: Alberto Caimo
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/abergm.R | 47 +++++++++++++++++++++--------------------------
man/abergm.Rd | 16 ++++++++--------
4 files changed, 36 insertions(+), 41 deletions(-)
Title: Agricultural datasets
Diff between agridat versions 1.8.1 dated 2014-06-21 and 1.9 dated 2014-07-02
Description: Datasets from books and papers related to agriculture.
Example analyses included. Functions for plotting field designs and GGE biplots.
Author: Kevin Wright
Maintainer: Kevin Wright
agridat-1.8.1/agridat/data/beall.borers.txt.gz |only
agridat-1.8.1/agridat/data/steel.soybeanmet.txt.gz |only
agridat-1.8.1/agridat/man/beall.borers.Rd |only
agridat-1.8.1/agridat/man/steel.soybeanmet.Rd |only
agridat-1.9/agridat/DESCRIPTION | 22
agridat-1.9/agridat/MD5 | 378 ++++++++-----
agridat-1.9/agridat/NAMESPACE | 17
agridat-1.9/agridat/NEWS | 84 +-
agridat-1.9/agridat/R/desplot.r | 44 -
agridat-1.9/agridat/R/gge.r |only
agridat-1.9/agridat/R/vc.r |only
agridat-1.9/agridat/build |only
agridat-1.9/agridat/data/beall.webworms.txt.gz |only
agridat-1.9/agridat/data/besag.endive.txt.gz |only
agridat-1.9/agridat/data/besag.met.txt.gz |binary
agridat-1.9/agridat/data/bliss.borers.txt.gz |only
agridat-1.9/agridat/data/brandt.switchback.txt.gz |only
agridat-1.9/agridat/data/butron.maize.txt.gz |only
agridat-1.9/agridat/data/carlson.germination.txt.gz |only
agridat-1.9/agridat/data/cochran.factorial.txt.gz |only
agridat-1.9/agridat/data/connolly.potato.txt.gz |only
agridat-1.9/agridat/data/cornelius.maize.txt.gz |only
agridat-1.9/agridat/data/cullis.earlygen.txt.gz |only
agridat-1.9/agridat/data/datalist | 55 +
agridat-1.9/agridat/data/fisher.latin.txt.gz |only
agridat-1.9/agridat/data/foulley.calving.txt.gz |only
agridat-1.9/agridat/data/fox.wheat.txt.gz |only
agridat-1.9/agridat/data/gilmour.serpentine.txt.gz |binary
agridat-1.9/agridat/data/gomez.splitplot.subsample.txt.gz |only
agridat-1.9/agridat/data/goulden.latin.txt.gz |only
agridat-1.9/agridat/data/gumpertz.pepper.txt.gz |only
agridat-1.9/agridat/data/harrison.priors.txt.gz |only
agridat-1.9/agridat/data/hayman.tobacco.txt.gz |binary
agridat-1.9/agridat/data/hazell.vegetables.txt.gz |only
agridat-1.9/agridat/data/heady.fertilizer.txt.gz |only
agridat-1.9/agridat/data/holland.arthropods.txt.gz |only
agridat-1.9/agridat/data/hunter.corn.txt.gz |only
agridat-1.9/agridat/data/jansen.strawberry.txt.gz |only
agridat-1.9/agridat/data/kalamkar.potato.uniformity.txt.gz |only
agridat-1.9/agridat/data/kang.maize.txt.gz |only
agridat-1.9/agridat/data/kang.peanut.txt.gz |only
agridat-1.9/agridat/data/karcher.turfgrass.txt.gz |only
agridat-1.9/agridat/data/keen.potatodamage.txt.gz |only
agridat-1.9/agridat/data/lasrosas.corn.txt.gz |only
agridat-1.9/agridat/data/lee.potatoblight.txt.gz |only
agridat-1.9/agridat/data/lonnquist.maize.txt.gz |only
agridat-1.9/agridat/data/lucas.switchback.txt.gz |only
agridat-1.9/agridat/data/mcleod.barley.txt.gz |only
agridat-1.9/agridat/data/mead.cauliflower.txt.gz |only
agridat-1.9/agridat/data/mercer.mangold.uniformity.txt.gz |only
agridat-1.9/agridat/data/patterson.switchback.txt.gz |only
agridat-1.9/agridat/data/piepho.cooksfoot.txt.gz |only
agridat-1.9/agridat/data/sinclair.clover.txt.gz |only
agridat-1.9/agridat/data/snijders.fusarium.txt.gz |only
agridat-1.9/agridat/data/steel.soybean.txt.gz |only
agridat-1.9/agridat/data/stirret.borers.txt.gz |only
agridat-1.9/agridat/data/theobald.barley.txt.gz |only
agridat-1.9/agridat/data/turner.herbicide.txt.gz |only
agridat-1.9/agridat/data/vargas.txe.rda |only
agridat-1.9/agridat/data/vold.longterm.txt.gz |only
agridat-1.9/agridat/data/wallace.iowaland.txt.gz |only
agridat-1.9/agridat/data/walsh.cottonprice.txt.gz |only
agridat-1.9/agridat/data/wassom.brome1.uniformity.txt.gz |only
agridat-1.9/agridat/data/wassom.brome2.uniformity.txt.gz |only
agridat-1.9/agridat/data/wassom.brome3.uniformity.txt.gz |only
agridat-1.9/agridat/data/weiss.incblock.txt.gz |only
agridat-1.9/agridat/data/weiss.lattice.txt.gz |only
agridat-1.9/agridat/data/welch.bermudagrass.txt.gz |only
agridat-1.9/agridat/data/yang.barley.txt.gz |only
agridat-1.9/agridat/inst/doc |only
agridat-1.9/agridat/man/RedGrayBlue.Rd | 3
agridat-1.9/agridat/man/adugna.sorghum.Rd | 11
agridat-1.9/agridat/man/agridat.Rd | 161 +++--
agridat-1.9/agridat/man/archbold.apple.Rd | 21
agridat-1.9/agridat/man/australia.soybean.Rd | 18
agridat-1.9/agridat/man/baker.barley.uniformity.Rd | 13
agridat-1.9/agridat/man/batchelor.uniformity.Rd | 18
agridat-1.9/agridat/man/beall.webworms.Rd |only
agridat-1.9/agridat/man/besag.bayesian.Rd | 7
agridat-1.9/agridat/man/besag.elbatan.Rd | 28
agridat-1.9/agridat/man/besag.endive.Rd |only
agridat-1.9/agridat/man/besag.met.Rd | 84 ++
agridat-1.9/agridat/man/blackman.wheat.Rd | 8
agridat-1.9/agridat/man/bliss.borers.Rd |only
agridat-1.9/agridat/man/bond.diallel.Rd | 2
agridat-1.9/agridat/man/box.cork.Rd | 10
agridat-1.9/agridat/man/brandle.rape.Rd | 28
agridat-1.9/agridat/man/brandt.switchback.Rd |only
agridat-1.9/agridat/man/bridges.cucmber.Rd | 33 -
agridat-1.9/agridat/man/broadbalk.wheat.Rd | 8
agridat-1.9/agridat/man/butron.maize.Rd |only
agridat-1.9/agridat/man/byers.apple.Rd | 18
agridat-1.9/agridat/man/caribbean.maize.Rd | 2
agridat-1.9/agridat/man/carlson.germination.Rd |only
agridat-1.9/agridat/man/carmer.density.Rd | 42 +
agridat-1.9/agridat/man/cate.potassium.Rd | 8
agridat-1.9/agridat/man/cleveland.soil.Rd | 33 -
agridat-1.9/agridat/man/cochran.bib.Rd | 7
agridat-1.9/agridat/man/cochran.eelworms.Rd | 4
agridat-1.9/agridat/man/cochran.factorial.Rd |only
agridat-1.9/agridat/man/cochran.wireworms.Rd | 15
agridat-1.9/agridat/man/connolly.potato.Rd |only
agridat-1.9/agridat/man/cornelius.maize.Rd |only
agridat-1.9/agridat/man/corsten.interaction.Rd | 2
agridat-1.9/agridat/man/cox.stripsplit.Rd | 13
agridat-1.9/agridat/man/crossa.wheat.Rd | 15
agridat-1.9/agridat/man/crowder.seeds.Rd | 5
agridat-1.9/agridat/man/cullis.earlygen.Rd |only
agridat-1.9/agridat/man/darwin.maize.Rd | 2
agridat-1.9/agridat/man/denis.missing.Rd | 6
agridat-1.9/agridat/man/denis.ryegrass.Rd | 5
agridat-1.9/agridat/man/desplot.Rd | 22
agridat-1.9/agridat/man/digby.jointregression.Rd | 23
agridat-1.9/agridat/man/durban.competition.Rd | 11
agridat-1.9/agridat/man/durban.rowcol.Rd | 7
agridat-1.9/agridat/man/durban.splitplot.Rd | 25
agridat-1.9/agridat/man/eden.potato.Rd | 20
agridat-1.9/agridat/man/engelstad.nitro.Rd | 8
agridat-1.9/agridat/man/fan.stability.Rd | 2
agridat-1.9/agridat/man/federer.diagcheck.Rd | 62 +-
agridat-1.9/agridat/man/fisher.latin.Rd |only
agridat-1.9/agridat/man/foulley.calving.Rd |only
agridat-1.9/agridat/man/fox.wheat.Rd |only
agridat-1.9/agridat/man/gathmann.bt.Rd | 8
agridat-1.9/agridat/man/gauch.soy.Rd | 8
agridat-1.9/agridat/man/gge.Rd |only
agridat-1.9/agridat/man/gilmour.serpentine.Rd | 12
agridat-1.9/agridat/man/gilmour.slatehall.Rd | 19
agridat-1.9/agridat/man/gomez.fractionalfactorial.Rd | 20
agridat-1.9/agridat/man/gomez.multilocsplitplot.Rd | 19
agridat-1.9/agridat/man/gomez.nitrogen.Rd | 11
agridat-1.9/agridat/man/gomez.rice.uniformity.Rd | 6
agridat-1.9/agridat/man/gomez.seedrate.Rd | 24
agridat-1.9/agridat/man/gomez.splitplot.subsample.Rd |only
agridat-1.9/agridat/man/gomez.splitsplit.Rd | 9
agridat-1.9/agridat/man/gomez.stripplot.Rd | 11
agridat-1.9/agridat/man/gomez.stripsplitplot.Rd | 12
agridat-1.9/agridat/man/gotway.hessianfly.Rd | 13
agridat-1.9/agridat/man/goulden.barley.uniformity.Rd | 6
agridat-1.9/agridat/man/goulden.latin.Rd |only
agridat-1.9/agridat/man/graybill.heteroskedastic.Rd | 6
agridat-1.9/agridat/man/gumpertz.pepper.Rd |only
agridat-1.9/agridat/man/hanks.sprinkler.Rd | 40 -
agridat-1.9/agridat/man/harris.multi.uniformity.Rd | 8
agridat-1.9/agridat/man/harris.wateruse.Rd | 121 ++--
agridat-1.9/agridat/man/harrison.priors.Rd |only
agridat-1.9/agridat/man/hayman.tobacco.Rd | 112 +++
agridat-1.9/agridat/man/hazell.vegetables.Rd |only
agridat-1.9/agridat/man/heady.fertilizer.Rd |only
agridat-1.9/agridat/man/henderson.milkfat.Rd | 3
agridat-1.9/agridat/man/hernandez.nitrogen.Rd | 38 -
agridat-1.9/agridat/man/hessling.argentina.Rd | 11
agridat-1.9/agridat/man/hildebrand.systems.Rd | 58 +
agridat-1.9/agridat/man/holland.arthropods.Rd |only
agridat-1.9/agridat/man/holshouser.splitstrip.Rd | 21
agridat-1.9/agridat/man/hughes.grapes.Rd | 5
agridat-1.9/agridat/man/hunter.corn.Rd |only
agridat-1.9/agridat/man/ilri.sheep.Rd | 27
agridat-1.9/agridat/man/immer.sugarbeet.uniformity.Rd | 2
agridat-1.9/agridat/man/ivins.herbs.Rd | 28
agridat-1.9/agridat/man/jansen.strawberry.Rd |only
agridat-1.9/agridat/man/jenkyn.mildew.Rd | 18
agridat-1.9/agridat/man/john.alpha.Rd | 29
agridat-1.9/agridat/man/johnson.blight.Rd | 39 +
agridat-1.9/agridat/man/kalamkar.potato.uniformity.Rd |only
agridat-1.9/agridat/man/kang.maize.Rd |only
agridat-1.9/agridat/man/kang.peanut.Rd |only
agridat-1.9/agridat/man/karcher.turfgrass.Rd |only
agridat-1.9/agridat/man/keen.potatodamage.Rd |only
agridat-1.9/agridat/man/kempton.barley.uniformity.Rd | 12
agridat-1.9/agridat/man/kempton.competition.Rd | 6
agridat-1.9/agridat/man/kempton.rowcol.Rd | 4
agridat-1.9/agridat/man/kempton.slatehall.Rd | 32 -
agridat-1.9/agridat/man/lambert.soiltemp.Rd | 2
agridat-1.9/agridat/man/lasrosas.corn.Rd |only
agridat-1.9/agridat/man/lavoranti.eucalyptus.Rd | 15
agridat-1.9/agridat/man/lee.potatoblight.Rd |only
agridat-1.9/agridat/man/li.millet.uniformity.Rd | 2
agridat-1.9/agridat/man/lonnquist.maize.Rd |only
agridat-1.9/agridat/man/lucas.switchback.Rd |only
agridat-1.9/agridat/man/lyon.potato.uniformity.Rd | 4
agridat-1.9/agridat/man/lyons.wheat.Rd | 8
agridat-1.9/agridat/man/mcconway.turnip.Rd | 19
agridat-1.9/agridat/man/mcleod.barley.Rd |only
agridat-1.9/agridat/man/mead.cauliflower.Rd |only
agridat-1.9/agridat/man/mead.cowpeamaize.Rd | 18
agridat-1.9/agridat/man/mead.germination.Rd | 9
agridat-1.9/agridat/man/mead.strawberry.Rd | 2
agridat-1.9/agridat/man/mercer.mangold.uniformity.Rd |only
agridat-1.9/agridat/man/mercer.wheat.uniformity.Rd | 19
agridat-1.9/agridat/man/minnesota.barley.weather.Rd | 6
agridat-1.9/agridat/man/minnesota.barley.yield.Rd | 1
agridat-1.9/agridat/man/nass.corn.Rd | 38 -
agridat-1.9/agridat/man/nebraska.farmincome.Rd | 29
agridat-1.9/agridat/man/ortiz.tomato.Rd | 11
agridat-1.9/agridat/man/pacheco.soybean.Rd | 8
agridat-1.9/agridat/man/patterson.switchback.Rd |only
agridat-1.9/agridat/man/pearce.apple.Rd | 8
agridat-1.9/agridat/man/pearl.kernels.Rd | 13
agridat-1.9/agridat/man/piepho.cooksfoot.Rd |only
agridat-1.9/agridat/man/ratkowsky.onions.Rd | 8
agridat-1.9/agridat/man/rothamsted.brussels.Rd | 3
agridat-1.9/agridat/man/salmon.bunt.Rd | 8
agridat-1.9/agridat/man/senshu.rice.Rd | 10
agridat-1.9/agridat/man/shafii.rapeseed.Rd | 14
agridat-1.9/agridat/man/sinclair.clover.Rd |only
agridat-1.9/agridat/man/smith.corn.uniformity.Rd | 26
agridat-1.9/agridat/man/snedecor.asparagus.Rd | 53 +
agridat-1.9/agridat/man/snijders.fusarium.Rd |only
agridat-1.9/agridat/man/steel.soybean.Rd |only
agridat-1.9/agridat/man/stephens.sorghum.uniformity.Rd | 2
agridat-1.9/agridat/man/stirret.borers.Rd |only
agridat-1.9/agridat/man/streibig.competition.Rd | 9
agridat-1.9/agridat/man/stroup.nin.Rd | 11
agridat-1.9/agridat/man/stroup.splitplot.Rd | 81 +-
agridat-1.9/agridat/man/student.barley.Rd | 15
agridat-1.9/agridat/man/talbot.potato.Rd | 6
agridat-1.9/agridat/man/theobald.barley.Rd |only
agridat-1.9/agridat/man/theobald.covariate.Rd | 30 -
agridat-1.9/agridat/man/thompson.cornsoy.Rd | 2
agridat-1.9/agridat/man/turner.herbicide.Rd |only
agridat-1.9/agridat/man/vargas.txe.Rd |only
agridat-1.9/agridat/man/vargas.wheat1.Rd | 10
agridat-1.9/agridat/man/vargas.wheat2.Rd | 16
agridat-1.9/agridat/man/vc-methods.Rd |only
agridat-1.9/agridat/man/verbyla.lupin.Rd | 10
agridat-1.9/agridat/man/vold.longterm.Rd |only
agridat-1.9/agridat/man/vsn.lupin3.Rd | 51 +
agridat-1.9/agridat/man/wallace.iowaland.Rd |only
agridat-1.9/agridat/man/walsh.cottonprice.Rd |only
agridat-1.9/agridat/man/wassom.brome1.uniformity.Rd |only
agridat-1.9/agridat/man/waynick.soil.Rd | 4
agridat-1.9/agridat/man/wedderburn.barley.Rd | 50 +
agridat-1.9/agridat/man/weiss.incblock.Rd |only
agridat-1.9/agridat/man/weiss.lattice.Rd |only
agridat-1.9/agridat/man/welch.bermudagrass.Rd |only
agridat-1.9/agridat/man/wiebe.wheat.uniformity.Rd | 21
agridat-1.9/agridat/man/williams.barley.uniformity.Rd | 5
agridat-1.9/agridat/man/williams.cotton.uniformity.Rd | 6
agridat-1.9/agridat/man/williams.trees.Rd | 7
agridat-1.9/agridat/man/yan.winterwheat.Rd | 9
agridat-1.9/agridat/man/yang.barley.Rd |only
agridat-1.9/agridat/man/yates.oats.Rd | 25
agridat-1.9/agridat/man/zuidhof.broiler.Rd | 1
agridat-1.9/agridat/vignettes |only
245 files changed, 1925 insertions(+), 988 deletions(-)