More information about BayesNetDiscovery at CRAN
Permanent link
Title: Some Tools for Survey Statistics in Educational Assessment,
Developed by BIFIE
Diff between BIFIEsurvey versions 0.1-61 dated 2014-07-02 and 0.2-37 dated 2014-07-12
Description:
Some Tools for Survey Statistics in Educational Assessment,
Developed by BIFIE.
Bundesinstitut fuer Bildungsforschung,
Entwicklung und Innovation im oesterreichischen Schulwesen;
Federal Institute for Educational Research, Innovation and
Development of the Austrian School System;
Salzburg, Austria.
Author: BIFIE
Maintainer: Alexander Robitzsch
DESCRIPTION | 8 -
MD5 | 45 ++++--
NAMESPACE | 9 +
R/BIFIE.data.R | 6
R/BIFIE.data.jack.R | 65 ++++++++-
R/BIFIE.data.transform.R |only
R/BIFIE.ecdf.R |only
R/BIFIE.freq.R | 4
R/BIFIE.hist.R |only
data/data.pisaNLD.rda |only
data/data.test1.rda |only
data/datalist |only
inst/NEWS | 14 ++
man/BIFIE.by.Rd | 2
man/BIFIE.correl.Rd | 2
man/BIFIE.data.Rd | 10 +
man/BIFIE.data.jack.Rd | 64 +++++++--
man/BIFIE.data.transform.Rd |only
man/BIFIE.ecdf.Rd |only
man/BIFIE.freq.Rd | 2
man/BIFIE.hist.Rd |only
man/BIFIE.linreg.Rd | 2
man/BIFIE.univar.test.Rd | 2
man/BIFIEsurvey-package.Rd | 48 ++++---
man/data.pisaNLD.Rd |only
man/data.test1.Rd |only
man/data.timss1.Rd | 5
src/univar.cpp | 293 +++++++++++++++++++++++++++++++++++++++++---
src/univar_helpers.h | 168 ++++++++++++++++++++++++-
29 files changed, 648 insertions(+), 101 deletions(-)
Title: TFDEA (Technology Forecasting using DEA)
Diff between TFDEA versions 0.8.3 dated 2014-03-31 and 0.9.4 dated 2014-07-12
Description: The package implements the TFDEA algorithm for technology forecasting.
Using DEA it forecasts the capabilities of future technologies. The package also
includes basic DEA (Data Envelopment Analysis) and SDEA (Super-efficiency Data
Envelopment Analysis). In additional the package includes some standard
technology forecasting data sets.
Author: ETA Research Group at Portland State University
Maintainer: Tom Shott
DESCRIPTION | 16 -
MD5 | 25 +-
NAMESPACE | 3
R/DEA.R | 435 +++-------------------------------------------
R/DEA_MALM.R |only
R/SDEA.R | 41 +++-
R/TFDEA.R | 462 +++++++++++++++++++++----------------------------
R/dea_internal.R |only
R/utility.R | 354 ++++++++++++++++++++-----------------
data/fighter_jet.RData |binary
man/DEA.Rd | 64 +++---
man/SDEA.Rd | 56 +++--
man/TFDEA.Rd | 115 ++++++++----
man/fighter_jet.Rd | 4
man/isEfficient.Rd |only
15 files changed, 624 insertions(+), 951 deletions(-)
Title: Mixture Models for Clustering and Classification
Diff between mixture versions 1.0 dated 2013-03-09 and 1.1 dated 2014-07-12
Description: An implementation of all 14 Gaussian parsimonious
clustering models (GPCMs) for model-based clustering and
model-based classification.
Author: Ryan P. Browne and Paul D. McNicholas
Maintainer: Ryan Browne
ChangeLog |only
DESCRIPTION | 10 +++++-----
MD5 | 11 +++++++----
NAMESPACE | 4 ++--
inst/CITATION | 22 ++++++++--------------
man/e.step.Rd |only
man/m.step.Rd |only
man/mixture.Rd | 10 +++++-----
8 files changed, 27 insertions(+), 30 deletions(-)
Title: Functions to use with data from the Implicit Association Test
Diff between IAT versions 0.1 dated 2013-09-24 and 0.2 dated 2014-07-12
Description: Contains a function to implement the standard D-Scoring algorithm
(Greenwald, Banaji, & Nosek, 2003) for Implicit Association Test (IAT)
data, as well as various other functions to produce plots of IAT data.
Author: Dan Martin
Maintainer: Dan Martin
IAT-0.1/IAT/data/IATData.RData |only
IAT-0.2/IAT/DESCRIPTION | 12 +---
IAT-0.2/IAT/MD5 | 23 ++++-----
IAT-0.2/IAT/NAMESPACE | 2
IAT-0.2/IAT/R/cleanIATExample.R | 32 +++++-------
IAT-0.2/IAT/R/plotItemErr.R | 2
IAT-0.2/IAT/README.md |only
IAT-0.2/IAT/data/IATData.rdata |only
IAT-0.2/IAT/man/IATData.Rd | 12 +---
IAT-0.2/IAT/man/cleanIAT.Rd | 102 ++++++++++++++--------------------------
IAT-0.2/IAT/man/plotIIV.Rd | 30 ++++-------
IAT-0.2/IAT/man/plotIndVar.Rd | 32 ++++--------
IAT-0.2/IAT/man/plotItemErr.Rd | 35 +++++--------
IAT-0.2/IAT/man/plotItemVar.Rd | 34 ++++---------
14 files changed, 125 insertions(+), 191 deletions(-)
Title: R package to compute the FastHCS outlyingness index.
Diff between FastHCS versions 0.0.1 dated 2014-02-17 and 0.0.2 dated 2014-07-12
Description: The FastHCS outlyingness index is a method for finding outliers in high dimensional data-sets.
Author: Kaveh Vakili [aut, cre]
Maintainer: Kaveh Vakili
FastHCS-0.0.1/FastHCS/data/Wine.txt.gz |only
FastHCS-0.0.1/FastHCS/man/Wine.Rd |only
FastHCS-0.0.2/FastHCS/DESCRIPTION | 6 ++--
FastHCS-0.0.2/FastHCS/MD5 | 14 +++++-----
FastHCS-0.0.2/FastHCS/R/FastHCS.R | 1
FastHCS-0.0.2/FastHCS/data/Tablets.txt.gz |only
FastHCS-0.0.2/FastHCS/data/datalist | 2 -
FastHCS-0.0.2/FastHCS/man/Tablets.Rd |only
FastHCS-0.0.2/FastHCS/src/FastHCS.cpp | 40 ++++++++++++++++--------------
FastHCS-0.0.2/FastHCS/src/Makevars | 1
10 files changed, 34 insertions(+), 30 deletions(-)
Title: Analyses of Phylogenetics and Evolution
Diff between ape versions 3.1-2 dated 2014-05-27 and 3.1-3 dated 2014-07-12
Description: ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading and writing nucleotide sequences, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Author: Emmanuel Paradis [aut, cre, cph],
Ben Bolker [aut, cph],
Julien Claude [aut, cph],
Hoa Sien Cuong [aut, cph],
Richard Desper [aut, cph],
Benoit Durand [aut, cph],
Julien Dutheil [aut, cph],
Olivier Gascuel [aut, cph],
Christoph Heibl [aut, cph],
Daniel Lawson [aut, cph],
Vincent Lefort [aut, cph],
Pierre Legendre [aut, cph],
Jim Lemon [aut, cph],
Rosemary McCloskey [aut, cph],
Johan Nylander [aut, cph],
Rainer Opgen-Rhein [aut, cph],
Andrei-Alin Popescu [aut, cph],
Klaus Schliep [aut, cph],
Korbinian Strimmer [aut, cph],
Damien de Vienne [aut, cph]
Maintainer: Emmanuel Paradis
DESCRIPTION | 82 ++++++++++++++++++++++++++--------------------------
MD5 | 30 ++++++++++---------
NEWS | 27 +++++++++++++++++
R/nodelabels.R | 8 ++---
R/phymltest.R | 13 ++++----
R/read.GenBank.R | 4 +-
R/read.dna.R | 9 ++++-
R/root.R | 12 +++++--
R/rotate.R | 41 ++++++++++----------------
R/rtt.R |only
R/which.edge.R | 47 +++++++++--------------------
inst/doc/MoranI.pdf |binary
man/dist.dna.Rd | 2 -
man/image.DNAbin.Rd | 1
man/nodelabels.Rd | 7 ++++
man/rtt.Rd |only
man/which.edge.Rd | 10 +++---
17 files changed, 159 insertions(+), 134 deletions(-)
Title: R code for Stock Synthesis
Diff between r4ss versions 1.22 dated 2014-07-09 and 1.22.1 dated 2014-07-12
Description: A collection of R functions for use with Stock Synthesis, a
fisheries stock assessment modeling platform written in ADMB by Dr. Richard
D. Methot at the NMFS Northwest Fisheries Science Center. The functions
include tools for summarizing and plotting results, manipulating files,
visualizing model parameterizations, and various other tasks.
Author: Ian Taylor, Ian Stewart, Allan Hicks, Tommy Garrison,
Andre Punt, John Wallace, Chantel Wetzel, James Thorson,
Yukio Takeuchi, Cole Monnahan, and other contributors.
Maintainer: Ian Taylor
DESCRIPTION | 28 ++++---
MD5 | 164 ++++++++++++++++++++++-----------------------
NAMESPACE | 71 +++++++++++++++++++
R/IOTCmove.R | 1
R/NegLogInt_Fn.R | 1
R/PinerPlot.R | 1
R/RebuildPlot.R | 1
R/SS_RunJitter.R | 1
R/SS_changepars.R | 1
R/SS_doRetro.R | 1
R/SS_fitbiasramp.R | 1
R/SS_html.R | 1
R/SS_makedatlist.R | 1
R/SS_output.R | 1
R/SS_parlines.R | 1
R/SS_plots.R | 1
R/SS_profile.R | 1
R/SS_readctl.R | 2
R/SS_readdat.R | 1
R/SS_readforecast.R | 1
R/SS_readstarter.R | 1
R/SS_recdevs.R | 1
R/SS_splitdat.R | 1
R/SS_write_length.fit.R | 1
R/SS_writectl.R | 1
R/SS_writedat.R | 1
R/SS_writeforecast.R | 1
R/SS_writestarter.R | 1
R/SSbootstrap.R | 1
R/SSgetMCMC.R | 1
R/SSgetoutput.R | 1
R/SSmakeMmatrix.R | 1
R/SSplotBiology.R | 3
R/SSplotCatch.R | 1
R/SSplotCohorts.R | 1
R/SSplotComparisons.R | 1
R/SSplotComps.R | 1
R/SSplotData.R | 1
R/SSplotDiscard.R | 1
R/SSplotIndices.R | 1
R/SSplotMCMC_ExtraSelex.R | 1
R/SSplotMnwt.R | 1
R/SSplotMovementMap.R | 1
R/SSplotMovementRates.R | 18 ++--
R/SSplotNumbers.R | 1
R/SSplotPars.R | 1
R/SSplotProfile.R | 1
R/SSplotRecdevs.R | 1
R/SSplotRecdist.R | 1
R/SSplotRetroRecruits.R | 6 +
R/SSplotSPR.R | 1
R/SSplotSelex.R | 1
R/SSplotSpawnrecruit.R | 1
R/SSplotSummaryF.R | 1
R/SSplotTags.R | 1
R/SSplotTimeseries.R | 1
R/SSplotYield.R | 1
R/SSsummarize.R | 1
R/SStableComparisons.R | 1
R/TSCplot.R | 1
R/addSSsummarize.R | 1
R/getADMBHessian.R | 6 +
R/make_multifig.R | 1
R/mcmc.nuisance.R | 1
R/mcmc.out.R | 1
R/mountains.R | 1
R/movepars.R | 99 +++++++++++++--------------
R/r4ss-package.R | 12 +--
R/r4ss_logo.R |only
R/read.admbFit.R | 3
R/rich.colors.short.R | 2
R/sel.line.R | 1
R/selfit.R | 1
R/selfit_spline.R | 1
R/stackpoly.R | 1
R/update_r4ss_files.R | 1
man/SS_readctl.Rd | 3
man/SSplotMovementRates.Rd | 8 +-
man/SSplotRetroRecruits.Rd | 6 +
man/getADMBHessian.Rd | 8 +-
man/movepars.Rd | 11 +--
man/r4ss-package.Rd | 6 -
man/r4ss_logo.Rd |only
man/read.admbFit.Rd | 2
84 files changed, 340 insertions(+), 181 deletions(-)
Title: Regularization paths for SCAD- and MCP-penalized regression
models
Diff between ncvreg versions 3.1-0 dated 2014-02-25 and 3.2-0 dated 2014-07-12
Description: Efficient algorithms for fitting regularization paths for linear or logistic regression models penalized by MCP or SCAD, with optional additional L2 penalty ("Mnet").
Author: Patrick Breheny
Maintainer: Patrick Breheny
DESCRIPTION | 8 +-
MD5 | 50 +++++++-----
NAMESPACE | 2
NEWS | 9 ++
R/convexMin.R | 29 ++++---
R/coxCVL.R |only
R/cv.ncvreg.R | 21 +++--
R/cv.ncvsurv.R |only
R/ncvreg.R | 45 ++++++++---
R/ncvreg_fit.R | 44 +++++++++--
R/ncvsurv.R |only
R/plot.cv.ncvreg.R | 5 -
R/plot.ncvreg.R | 10 +-
R/predict.R | 16 +++-
R/setupLambda.R | 13 ++-
R/setupLambdaCox.R |only
R/summary.cv.ncvreg.R | 1
inst/tests/surv.R |only
inst/tests/test.R | 24 +++---
man/ncvreg-internal.Rd | 2
man/ncvreg-package.Rd | 4 -
man/ncvreg_fit.Rd | 11 +-
man/predict.Rd | 6 -
src/binomial.c | 190 ++++++++++++++++++++++++-------------------------
src/cox-dh.c |only
src/gaussian.c | 83 ++++++++++++++-------
src/ncvreg.c | 4 -
src/poisson.c | 160 +++++++++++++++++++++--------------------
src/raw.c | 14 ++-
29 files changed, 445 insertions(+), 306 deletions(-)
Title: Citations for knitr markdown files
Diff between knitcitations versions 0.6-2 dated 2014-05-31 and 1.0-1 dated 2014-07-12
Description: knitcitations provides the ability to create dynamic citations
in which the bibliographic information is pulled from the web rather
than having to be entered into a local database such as bibtex ahead of
time. Knitcitations is primarily aimed at authoring in the R markdown
format, and can provide outputs for web-based authoring such as linked
text and tooltips over inline citations. Cite using a DOI, URL, or
bibtex file key. See the package URL for details.
Author: Carl Boettiger [aut, cre]
Maintainer: Carl Boettiger
knitcitations-0.6-2/knitcitations/R/bib_format.R |only
knitcitations-0.6-2/knitcitations/R/cite.R |only
knitcitations-0.6-2/knitcitations/R/create_bibkey.R |only
knitcitations-0.6-2/knitcitations/R/formatref.R |only
knitcitations-0.6-2/knitcitations/R/functiontable.R |only
knitcitations-0.6-2/knitcitations/R/init_knitbib.R |only
knitcitations-0.6-2/knitcitations/R/inline_formats.R |only
knitcitations-0.6-2/knitcitations/R/newbib.R |only
knitcitations-0.6-2/knitcitations/R/print_html.R |only
knitcitations-0.6-2/knitcitations/R/print_markdown.R |only
knitcitations-0.6-2/knitcitations/R/print_rdfa.R |only
knitcitations-0.6-2/knitcitations/R/read.bibtex.R |only
knitcitations-0.6-2/knitcitations/R/ref.R |only
knitcitations-0.6-2/knitcitations/R/write_cache.R |only
knitcitations-0.6-2/knitcitations/R/zzz.R |only
knitcitations-0.6-2/knitcitations/inst/examples/knitr.bib |only
knitcitations-0.6-2/knitcitations/man/bib_format.Rd |only
knitcitations-0.6-2/knitcitations/man/check.Rd |only
knitcitations-0.6-2/knitcitations/man/create_bibkey.Rd |only
knitcitations-0.6-2/knitcitations/man/format_authoryear_p.Rd |only
knitcitations-0.6-2/knitcitations/man/format_authoryear_t.Rd |only
knitcitations-0.6-2/knitcitations/man/formatref.Rd |only
knitcitations-0.6-2/knitcitations/man/functiontable.Rd |only
knitcitations-0.6-2/knitcitations/man/kcite.Rd |only
knitcitations-0.6-2/knitcitations/man/knitcitations_data.Rd |only
knitcitations-0.6-2/knitcitations/man/newbib.Rd |only
knitcitations-0.6-2/knitcitations/man/numeral.Rd |only
knitcitations-0.6-2/knitcitations/man/print_html.Rd |only
knitcitations-0.6-2/knitcitations/man/print_markdown.Rd |only
knitcitations-0.6-2/knitcitations/man/print_rdfa.Rd |only
knitcitations-0.6-2/knitcitations/man/ref.Rd |only
knitcitations-0.6-2/knitcitations/man/unique_inline.Rd |only
knitcitations-0.6-2/knitcitations/man/write_cache.Rd |only
knitcitations-1.0-1/knitcitations/DESCRIPTION | 13
knitcitations-1.0-1/knitcitations/MD5 | 79 +----
knitcitations-1.0-1/knitcitations/NAMESPACE | 12
knitcitations-1.0-1/knitcitations/NEWS | 21 +
knitcitations-1.0-1/knitcitations/R/bib_metadata.R |only
knitcitations-1.0-1/knitcitations/R/bibliography.R | 124 +++-----
knitcitations-1.0-1/knitcitations/R/cite_options.R | 32 +-
knitcitations-1.0-1/knitcitations/R/citep.R | 90 +++---
knitcitations-1.0-1/knitcitations/R/citet.R | 153 ++---------
knitcitations-1.0-1/knitcitations/R/cleanbib.R |only
knitcitations-1.0-1/knitcitations/R/greycite.R | 8
knitcitations-1.0-1/knitcitations/R/knitcitations.R |only
knitcitations-1.0-1/knitcitations/R/record_as_cited.R |only
knitcitations-1.0-1/knitcitations/R/write.bibtex.R | 70 ++---
knitcitations-1.0-1/knitcitations/inst/doc/tutorial.Rmd | 57 ----
knitcitations-1.0-1/knitcitations/inst/doc/tutorial.pdf |binary
knitcitations-1.0-1/knitcitations/man/bib_metadata.Rd |only
knitcitations-1.0-1/knitcitations/man/bibliography.Rd | 63 ++--
knitcitations-1.0-1/knitcitations/man/cite_options.Rd | 26 +
knitcitations-1.0-1/knitcitations/man/citep.Rd | 66 ++--
knitcitations-1.0-1/knitcitations/man/citet.Rd | 64 ++--
knitcitations-1.0-1/knitcitations/man/cleanbib.Rd | 24 -
knitcitations-1.0-1/knitcitations/man/read.bibtex.Rd | 26 -
knitcitations-1.0-1/knitcitations/man/record_as_cited.Rd |only
knitcitations-1.0-1/knitcitations/man/write.bibtex.Rd | 20 -
knitcitations-1.0-1/knitcitations/tests/testthat/cite.R | 58 +++-
knitcitations-1.0-1/knitcitations/vignettes/tutorial.Rmd | 57 ----
60 files changed, 427 insertions(+), 636 deletions(-)
Title: Smoothing splines for large samples
Diff between bigsplines versions 1.0-1 dated 2014-05-17 and 1.0-2 dated 2014-07-12
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Five marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, and nominal. Parametric predictors are also supported.
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
ChangeLog |only
DESCRIPTION | 10 +++---
MD5 | 49 ++++++++++++++++----------------
R/bigspline.R | 11 +++++--
R/bigssa.R | 10 +++---
R/bigssp.R | 10 +++---
R/bigtps.R | 70 ++++++++++++++++++++++++++++++++++------------
R/binsamp.R | 22 +++++++++-----
R/imagebar.R | 4 +-
R/makessa.R | 53 +++++++++++++++++++++++++++++-----
R/makessp.R | 56 +++++++++++++++++++++++++++++++-----
R/smartssa.R | 2 +
R/ssawork.R | 43 ++++++++++++++++++++++++----
R/sspwork.R | 40 ++++++++++++++++++++++----
man/bigspline.Rd | 14 ++++++---
man/bigsplines-package.Rd | 10 +++---
man/bigssa.Rd | 19 +++++++++---
man/bigssp.Rd | 19 +++++++++---
man/bigtps.Rd | 16 +++++++---
man/binsamp.Rd | 9 +++--
man/makessa.Rd | 19 +++++++++---
man/makessp.Rd | 19 +++++++++---
man/predict.css.Rd | 8 +++--
man/predict.ssa.Rd | 8 +++--
man/predict.ssp.Rd | 8 +++--
man/predict.tps.Rd | 4 +-
26 files changed, 393 insertions(+), 140 deletions(-)