Title: Solve systems of non linear equations
Diff between nleqslv versions 2.3 dated 2014-07-04 and 2.3.1 dated 2014-07-13
Description: Solve a system of non linear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian and
for specifying that a numerical Jacobian is banded.
Author: Berend Hasselman
Maintainer: Berend Hasselman
DESCRIPTION | 8 ++++----
MD5 | 15 +++++++++------
NEWS | 6 ++++++
R/nleqslv.R | 17 ++++++++++++-----
man/nleqslv.Rd | 11 ++++++-----
man/zznleqslv-iterationreport.Rd | 18 +++++++++---------
src/nwtrup.f | 5 +++--
tests/dslnexCN.R |only
tests/dslnexCN.Rout |only
tests/dslnexCN.Rout.save |only
10 files changed, 49 insertions(+), 31 deletions(-)
Title: Tools for creating D3 JavaScript network, tree, dendrogram, and
Sankey graphs from R
Diff between d3Network versions 0.5 dated 2014-05-09 and 0.5.1 dated 2014-07-13
Description: This packages is intended to make it easy to create D3 JavaScript
network, tree, dendrogram, and Sankey graphs from R using data frames.
Author: Christopher Gandrud
Maintainer: Christopher Gandrud
DESCRIPTION | 13 -
MD5 | 40 ++--
NAMESPACE | 2
NEWS | 62 ++++--
R/d3ForceNetwork.R | 131 +++++++------
R/d3Network.R | 122 ++++++------
R/d3Sankey.R | 2
R/d3SimpleNetwork.R | 106 +++++------
R/templates.R | 462 ++++++++++++++++++++++++-------------------------
README.md | 10 -
man/JSONtoDF.Rd | 2
man/MisLinks.Rd | 2
man/MisNodes.Rd | 2
man/d3ClusterDendro.Rd | 2
man/d3ForceNetwork.Rd | 17 +
man/d3Network.Rd | 5
man/d3Sankey.Rd | 4
man/d3SimpleNetwork.Rd | 2
man/d3Tree.Rd | 2
man/energy.Rd | 2
man/flare.Rd | 2
21 files changed, 514 insertions(+), 478 deletions(-)
Title: Extended Model Formulas
Diff between Formula versions 1.1-1 dated 2013-04-04 and 1.1-2 dated 2014-07-13
Description: Infrastructure for extended formulas with multiple parts on the
right-hand side and/or multiple responses on the left-hand side.
Author: Achim Zeileis [aut, cre],
Yves Croissant [aut]
Maintainer: Achim Zeileis
DESCRIPTION | 24 +++++++++++-------------
MD5 | 15 ++++++++-------
NAMESPACE | 3 +++
NEWS | 7 ++++++-
R/Formula.R | 10 ++++++++++
build |only
inst/doc/Formula.pdf |binary
man/Formula.Rd | 1 +
tests/Examples/Formula-Ex.Rout.save | 2 +-
9 files changed, 40 insertions(+), 22 deletions(-)
Title: YuGene: A simple approach to scale gene expression data derived
from different platforms for integrated analyses
Diff between YuGene versions 1.1.1 dated 2014-04-14 and 1.1.2 dated 2014-07-13
Description: YuGene is a simple method for comparison of gene
expression generated across different experiments, and on
different platforms; that does not require global
renormalization, and is not restricted to comparison of
identical probes. YuGene works on a range of microarray dataset
distributions, such as between manufacturers. The resulting
output allows direct comparisons of gene expression between
experiments and experimental platforms.
Author: Kim-Anh Le Cao, Florian Rohart, Leo McHugh, Othmar Korn, Christine A. Wells
Maintainer: Florian Rohart
DESCRIPTION | 10 +++++-----
MD5 | 19 +++++++++++++------
NAMESPACE | 8 +++++++-
R/YuGene.R | 10 ++++++++--
R/pca.YuGene.R |only
R/study_split.R |only
data/array.rda |only
data/ascorbate.rda |binary
data/datalist |only
man/YuGene-package.Rd | 6 +++---
man/YuGene.Rd | 8 ++++++--
man/array.Rd |only
man/pca.YuGene.Rd |only
man/pca.default.Rd |only
14 files changed, 42 insertions(+), 19 deletions(-)
Title: Simulation of Diffusion Processes
Diff between Sim.DiffProc versions 2.6 dated 2014-05-04 and 2.7 dated 2014-07-13
Description: The package "Sim.DiffProc" is an object created in R environment for simulation and modeling of stochastic differential equations (SDE's) the type Ito and Stratonovich. This package contains many objects, the numerical methods to find the solutions to SDE's (1, 2 and 3-dim), with a possibility for simulates a flows trajectories,with good accuracy. Many theoretical problems on the SDE's have become the object of practical research, as statistical analysis and simulation of solution of SDE's, enabled many searchers in different domains to use these equations to modeling and to analyse practical problems, in financial and actuarial modeling and other areas of application, for example modelling and simulate of dispersion in shallow water using the attractive center (Boukhetala K, 1996). We hope that the package presented here and the updated survey on the subject might be of help for practitioners, postgraduate and PhD students, and researchers in the field who might want to implement new methods.
Author: Arsalane Chouaib Guidoum, Kamal Boukhetala
Maintainer: Arsalane Chouaib Guidoum
Sim.DiffProc-2.6/Sim.DiffProc/inst/doc/FitSDE.R |only
Sim.DiffProc-2.7/Sim.DiffProc/DESCRIPTION | 10
Sim.DiffProc-2.7/Sim.DiffProc/LICENCE | 4
Sim.DiffProc-2.7/Sim.DiffProc/MD5 | 38
Sim.DiffProc-2.7/Sim.DiffProc/NEWS | 3
Sim.DiffProc-2.7/Sim.DiffProc/R/utils.R | 6
Sim.DiffProc-2.7/Sim.DiffProc/build/vignette.rds |binary
Sim.DiffProc-2.7/Sim.DiffProc/inst/CITATION | 6
Sim.DiffProc-2.7/Sim.DiffProc/inst/doc/FitSDE.Rnw | 603 --------------
Sim.DiffProc-2.7/Sim.DiffProc/inst/doc/FitSDE.pdf |binary
Sim.DiffProc-2.7/Sim.DiffProc/inst/doc/Introduction.Rnw | 2
Sim.DiffProc-2.7/Sim.DiffProc/inst/doc/Introduction.pdf |binary
Sim.DiffProc-2.7/Sim.DiffProc/inst/doc/SDEs.R | 74 -
Sim.DiffProc-2.7/Sim.DiffProc/inst/doc/SDEs.Rnw | 17
Sim.DiffProc-2.7/Sim.DiffProc/inst/doc/SDEs.pdf |binary
Sim.DiffProc-2.7/Sim.DiffProc/man/Sim.DiffProc-package.Rd | 10
Sim.DiffProc-2.7/Sim.DiffProc/vignettes/Core_FitSDE.tex |only
Sim.DiffProc-2.7/Sim.DiffProc/vignettes/FitSDE-022.pdf |only
Sim.DiffProc-2.7/Sim.DiffProc/vignettes/FitSDE-026.pdf |only
Sim.DiffProc-2.7/Sim.DiffProc/vignettes/FitSDE.Rnw | 603 --------------
Sim.DiffProc-2.7/Sim.DiffProc/vignettes/Introduction.Rnw | 2
Sim.DiffProc-2.7/Sim.DiffProc/vignettes/SDEs.Rnw | 17
22 files changed, 102 insertions(+), 1293 deletions(-)
Title: Algebraic statistics in R
Diff between algstat versions 0.0.0 dated 2014-04-29 and 0.0.1 dated 2014-07-13
Description: algstat is a package for algebraic statistics in R. Current
applications include exact inference in log-linear models for contingency
table data, analysis of ranked and partially ranked data, and general
purpose tools for multivariate polynomials, building on the mpoly package.
To aid in the process, algstat has ports to Macaulay2, Bertini,
Latte-Integrale and 4ti2.
Author: David Kahle
Maintainer: David Kahle
algstat-0.0.0/algstat/man/algeo.Rd |only
algstat-0.0.1/algstat/DESCRIPTION | 8
algstat-0.0.1/algstat/MD5 | 186 +++++++------
algstat-0.0.1/algstat/NAMESPACE | 12
algstat-0.0.1/algstat/NEWS | 20 +
algstat-0.0.1/algstat/R/abortion.r | 4
algstat-0.0.1/algstat/R/bertini.r | 4
algstat-0.0.1/algstat/R/bump.r | 2
algstat-0.0.1/algstat/R/city.r | 2
algstat-0.0.1/algstat/R/condorcet.r | 2
algstat-0.0.1/algstat/R/cookie.r | 4
algstat-0.0.1/algstat/R/count.r |only
algstat-0.0.1/algstat/R/countTables.r |only
algstat-0.0.1/algstat/R/drugs.r | 4
algstat-0.0.1/algstat/R/haberman.r | 4
algstat-0.0.1/algstat/R/handy.r | 4
algstat-0.0.1/algstat/R/helpers.r | 129 ++++++++-
algstat-0.0.1/algstat/R/hierarchical.r | 22 +
algstat-0.0.1/algstat/R/hmat.r | 14 -
algstat-0.0.1/algstat/R/is.bertini.r | 2
algstat-0.0.1/algstat/R/is.linear.r |only
algstat-0.0.1/algstat/R/is.m2.r | 2
algstat-0.0.1/algstat/R/latteMax.r |only
algstat-0.0.1/algstat/R/latteMin.r |only
algstat-0.0.1/algstat/R/m2.r | 12
algstat-0.0.1/algstat/R/markov.r | 74 +++--
algstat-0.0.1/algstat/R/metropolis.r | 2
algstat-0.0.1/algstat/R/paths.r |only
algstat-0.0.1/algstat/R/politicalGoals.r | 2
algstat-0.0.1/algstat/R/politics.r | 4
algstat-0.0.1/algstat/R/polyOptim.r | 2
algstat-0.0.1/algstat/R/polySolve.r | 5
algstat-0.0.1/algstat/R/print.bertini.r | 2
algstat-0.0.1/algstat/R/print.hierarchical.r | 2
algstat-0.0.1/algstat/R/print.spectral.r | 2
algstat-0.0.1/algstat/R/spectral.r | 4
algstat-0.0.1/algstat/R/subsets.r | 7
algstat-0.0.1/algstat/R/summary.bertini.r | 4
algstat-0.0.1/algstat/R/tab2vec.r | 17 -
algstat-0.0.1/algstat/R/tableau.r | 6
algstat-0.0.1/algstat/R/teshape.r | 2
algstat-0.0.1/algstat/R/variety.r | 4
algstat-0.0.1/algstat/R/zzz.r | 333 +++++++++++++++++++++---
algstat-0.0.1/algstat/man/Amaker.Rd | 12
algstat-0.0.1/algstat/man/Emaker.Rd | 14 -
algstat-0.0.1/algstat/man/Mmaker.Rd | 16 -
algstat-0.0.1/algstat/man/Pmaker.Rd | 13
algstat-0.0.1/algstat/man/Smaker.Rd | 15 -
algstat-0.0.1/algstat/man/Tmaker.Rd | 15 -
algstat-0.0.1/algstat/man/Umaker.Rd | 15 -
algstat-0.0.1/algstat/man/abortion.Rd | 8
algstat-0.0.1/algstat/man/algstat.Rd | 9
algstat-0.0.1/algstat/man/bertini.Rd | 15 -
algstat-0.0.1/algstat/man/bump.Rd | 91 +-----
algstat-0.0.1/algstat/man/city.Rd | 11
algstat-0.0.1/algstat/man/condorcet.Rd | 19 -
algstat-0.0.1/algstat/man/cookie.Rd | 10
algstat-0.0.1/algstat/man/count.Rd |only
algstat-0.0.1/algstat/man/countTables.Rd |only
algstat-0.0.1/algstat/man/drugs.Rd | 12
algstat-0.0.1/algstat/man/haberman.Rd | 8
algstat-0.0.1/algstat/man/handy.Rd | 5
algstat-0.0.1/algstat/man/hierarchical.Rd | 169 +++---------
algstat-0.0.1/algstat/man/hmat.Rd | 16 -
algstat-0.0.1/algstat/man/is.bertini.Rd | 5
algstat-0.0.1/algstat/man/is.linear.Rd |only
algstat-0.0.1/algstat/man/is.m2.Rd | 5
algstat-0.0.1/algstat/man/kprod.Rd |only
algstat-0.0.1/algstat/man/latteMax.Rd |only
algstat-0.0.1/algstat/man/latteMin.Rd |only
algstat-0.0.1/algstat/man/lower.Rd | 8
algstat-0.0.1/algstat/man/lpnorm.Rd | 9
algstat-0.0.1/algstat/man/m2.Rd | 14 -
algstat-0.0.1/algstat/man/markov.Rd | 40 +-
algstat-0.0.1/algstat/man/mchoose.Rd | 15 -
algstat-0.0.1/algstat/man/metropolis.Rd | 26 -
algstat-0.0.1/algstat/man/ones.Rd |only
algstat-0.0.1/algstat/man/politicalGoals.Rd | 18 -
algstat-0.0.1/algstat/man/politics.Rd | 12
algstat-0.0.1/algstat/man/polyOptim.Rd | 17 -
algstat-0.0.1/algstat/man/polySolve.Rd | 18 -
algstat-0.0.1/algstat/man/print.bertini.Rd | 9
algstat-0.0.1/algstat/man/print.hierarchical.Rd | 9
algstat-0.0.1/algstat/man/print.m2.Rd | 5
algstat-0.0.1/algstat/man/print.polyOptim.Rd | 9
algstat-0.0.1/algstat/man/print.spectral.Rd | 9
algstat-0.0.1/algstat/man/print.tableau.Rd | 5
algstat-0.0.1/algstat/man/projectOnto.Rd | 12
algstat-0.0.1/algstat/man/projectOntoPerp.Rd | 10
algstat-0.0.1/algstat/man/rvotes.Rd | 12
algstat-0.0.1/algstat/man/setBertiniPath.Rd |only
algstat-0.0.1/algstat/man/setLattePath.Rd |only
algstat-0.0.1/algstat/man/setM2Path.Rd |only
algstat-0.0.1/algstat/man/setMarkovPath.Rd |only
algstat-0.0.1/algstat/man/spectral.Rd | 99 ++-----
algstat-0.0.1/algstat/man/subsets.Rd | 17 -
algstat-0.0.1/algstat/man/summary.bertini.Rd | 9
algstat-0.0.1/algstat/man/tab2vec.Rd | 16 -
algstat-0.0.1/algstat/man/tableau.Rd | 19 -
algstat-0.0.1/algstat/man/teshape.Rd | 17 -
algstat-0.0.1/algstat/man/upper.Rd | 8
algstat-0.0.1/algstat/man/variety.Rd | 12
algstat-0.0.1/algstat/man/vec2tab.Rd | 15 -
103 files changed, 1051 insertions(+), 810 deletions(-)