Title: Bindings for the Google Translate API v2
Diff between translate versions 0.1 dated 2012-01-12 and 0.1.2 dated 2014-07-15
Description: Bindings for the Google Translate API v2
Author: Peter Danenberg
Maintainer: Peter Danenberg
DESCRIPTION | 11 +++++------
MD5 | 26 +++++++++++++++-----------
NAMESPACE | 6 ++++--
R/translate.R | 17 +++++++++--------
build |only
inst |only
man/detect.source.Rd | 11 ++++++-----
man/get.key.Rd | 9 +++++----
man/google.url.Rd | 21 +++++++++++----------
man/languages.Rd | 13 +++++++------
man/set.key.Rd | 7 ++++---
man/translate-package.Rd | 9 ++++++---
man/translate.Rd | 14 +++++++-------
tests/tests.R | 2 +-
vignettes |only
15 files changed, 80 insertions(+), 66 deletions(-)
Title: Identify and visualize significantly responsive branches in a
phylogenetic tree
Diff between SigTree versions 1.5 dated 2014-05-24 and 1.6 dated 2014-07-15
Description: SigTree takes a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip labels and p-values and determines the significance of the branches (families of p-values) and plots the tree with colored branches (corresponding to families) according to their levels of significance. Also produces a CSV file with the p-values of all of the branches as well as which tips belong to which branches. Finally, it exports a file that can be opened in FigTree that produces a colored plot (colored branches according to their significance of corresponding groups of p-values) with p-value annotations.
Author: John R. Stevens and Todd R. Jones
Maintainer: John R. Stevens
DESCRIPTION | 15 ++++++---------
MD5 | 22 +++++++++++-----------
NEWS | 24 ++++++++++++++++++++++++
R/export.figtree.R | 9 +++++----
R/export.inherit.R | 3 ++-
R/plotSigTree.R | 1 +
build/vignette.rds |binary
inst/doc/SigTree.R | 2 +-
inst/doc/SigTree.Rnw | 2 +-
inst/doc/SigTree.pdf |binary
man/SigTree-package.Rd | 4 ++--
vignettes/SigTree.Rnw | 2 +-
12 files changed, 54 insertions(+), 30 deletions(-)
Title: GoFKernel: Testing Goodness-of-fit with the Kernel Density
Estimator
Diff between GoFKernel versions 1.0 dated 2013-04-28 and 2.0-3 dated 2014-07-15
Description: Tests of goodness-of-fit based on kernel smoothing of the data
Author: Jose M. Pavia
Maintainer: Jose M. Pavia
DESCRIPTION | 11 ++---
MD5 | 24 +++++-----
NAMESPACE | 5 +-
R/GoFKernel.r | 103 +++++++++++++++++++++++++++++++++--------------
man/GoFKernel-package.Rd | 16 ++++---
man/area.between.Rd | 26 +++++------
man/density.reflected.Rd | 47 ++++++++++++---------
man/dgeometric.test.Rd | 49 +++++++++++++---------
man/fan.test.Rd | 44 +++++++++++---------
man/inverse.Rd | 25 +++++------
man/random.function.Rd | 14 +++---
man/risk76.1929.Rd | 2
man/support.facto.Rd | 20 ++++-----
13 files changed, 228 insertions(+), 158 deletions(-)
Title: R client for the Huffpost Pollster API
Diff between pollstR versions 1.0-0 dated 2014-05-02 and 1.0.1 dated 2014-07-15
Description: An R interface to the Huffington Post Pollster API, which provides
programmatic interface to political polls.
Author: Jeffrey B. Arnold [aut, cre],
Thomas J. Leeper [aut]
Maintainer: Jeffrey B. Arnold
DESCRIPTION | 12 -
MD5 | 38 ++---
NAMESPACE | 2
NEWS |only
R/chart.R | 7 -
R/charts.R | 4
R/pollstR-package.R | 4
inst/doc/introduction.Rmd | 97 ++++++-------
inst/doc/introduction.html | 182 ++++++++++++--------------
inst/vign/children/install.Rmd | 9 -
inst/vign/children/introduction.md |only
inst/vign/figures/obama-favorable-chart-2.png |binary
inst/vign/figures/obama-favorable-chart.png |binary
inst/vign/introduction.md | 97 ++++++-------
man/pollstR.Rd | 9 -
man/pollstr_chart.Rd | 32 ++--
man/pollstr_charts.Rd | 26 +--
man/pollstr_polls.Rd | 43 ++----
vignettes/assets/obama-favorable-chart-2.png |binary
vignettes/assets/obama-favorable-chart.png |binary
vignettes/introduction.Rmd | 97 ++++++-------
21 files changed, 310 insertions(+), 349 deletions(-)
Title: Distance Measures for Time Series data.
Diff between TSdist versions 1.1 dated 2014-05-28 and 1.2 dated 2014-07-15
Description: This package provides a set of commonly used distance measures for time series data. The application of these distance measures is useful to perform clustering, classification or other data mining tasks.
Author: Usue Mori, Alexander Mendiburu, J.A. Lozano
Maintainer: Usue Mori
TSdist-1.1/TSdist/vignettes/library.bib |only
TSdist-1.2/TSdist/DESCRIPTION | 6
TSdist-1.2/TSdist/MD5 | 44 -
TSdist-1.2/TSdist/R/cross_correlation_distance.R | 30 -
TSdist-1.2/TSdist/R/database_distances.R | 9
TSdist-1.2/TSdist/R/dissim_distance.R | 9
TSdist-1.2/TSdist/R/dissimapprox_distance.R | 5
TSdist-1.2/TSdist/R/dtw_distance.R | 12
TSdist-1.2/TSdist/R/edr_distance.R | 10
TSdist-1.2/TSdist/R/erp_distance.R | 12
TSdist-1.2/TSdist/R/fourier_distance.R | 19
TSdist-1.2/TSdist/R/keogh_lb_distance.R | 10
TSdist-1.2/TSdist/R/lcss_distance.R | 13
TSdist-1.2/TSdist/R/lp_distances.R | 23
TSdist-1.2/TSdist/R/pearson_correlation_distance.R | 19
TSdist-1.2/TSdist/R/sts_distance.R | 12
TSdist-1.2/TSdist/R/tquest_distance.R | 8
TSdist-1.2/TSdist/R/ts_distances.R | 9
TSdist-1.2/TSdist/build/vignette.rds |binary
TSdist-1.2/TSdist/inst/doc/TSdist.R | 42 -
TSdist-1.2/TSdist/inst/doc/TSdist.Rnw | 488 ++++++++++-----------
TSdist-1.2/TSdist/inst/doc/TSdist.pdf |binary
TSdist-1.2/TSdist/vignettes/TSdist.Rnw | 488 ++++++++++-----------
TSdist-1.2/TSdist/vignettes/TSdist.bib |only
24 files changed, 667 insertions(+), 601 deletions(-)
Title: ROSE: Random Over-Sampling Examples
Diff between ROSE versions 0.0-2 dated 2013-09-16 and 0.0-3 dated 2014-07-15
Description: The package provides functions to deal with binary classification
problems in the presence of imbalanced classes. Synthetic balanced samples are
generated according to ROSE (Menardi and Torelli, 2013).
Functions that implement more traditional remedies to the class imbalance
are also provided, as well as different metrics to evaluate a learner accuracy.
These are estimated by holdout, bootstrap or cross-validation methods.
Author: Nicola Lunardon, Giovanna Menardi, Nicola Torelli
Maintainer: Nicola Lunardon
ROSE-0.0-2/ROSE/R/ROSE.R |only
ROSE-0.0-3/ROSE/DESCRIPTION | 10 -
ROSE-0.0-3/ROSE/MD5 | 20 ++-
ROSE-0.0-3/ROSE/R/ROSE_eval.R |only
ROSE-0.0-3/ROSE/R/data_balancing_funcs.R |only
ROSE-0.0-3/ROSE/R/estimation_funcs.R |only
ROSE-0.0-3/ROSE/inst/CITATION | 32 ++---
ROSE-0.0-3/ROSE/inst/ChangeLog | 11 +-
ROSE-0.0-3/ROSE/man/ROSE-package.Rd | 9 -
ROSE-0.0-3/ROSE/man/ROSE.Rd | 39 ++-----
ROSE-0.0-3/ROSE/man/ROSE.eval.Rd | 14 +-
ROSE-0.0-3/ROSE/man/hacide.Rd | 170 +++++++++++++++----------------
ROSE-0.0-3/ROSE/man/ovun.sample.Rd | 19 +--
13 files changed, 165 insertions(+), 159 deletions(-)
Title: Convert country names and country codes
Diff between countrycode versions 0.16 dated 2013-08-20 and 0.17 dated 2014-07-15
Description: Standardize country names, convert them into one of
eleven coding schemes, convert between coding schemes, and
assign region descriptors.
Author: Vincent Arel-Bundock
Maintainer: Vincent Arel-Bundock
countrycode-0.16/countrycode/README.md |only
countrycode-0.16/countrycode/data/countrycode_data.csv |only
countrycode-0.17/countrycode/DESCRIPTION | 14 +-
countrycode-0.17/countrycode/MD5 | 24 ++--
countrycode-0.17/countrycode/NAMESPACE | 2
countrycode-0.17/countrycode/NEWS | 12 ++
countrycode-0.17/countrycode/R/countrycode-package.R | 10 +-
countrycode-0.17/countrycode/R/countrycode.R | 33 +++---
countrycode-0.17/countrycode/R/countrycode_data.R | 55 +++++------
countrycode-0.17/countrycode/data/countrycode_data.rda |binary
countrycode-0.17/countrycode/man/countrycode-package.Rd | 21 ++--
countrycode-0.17/countrycode/man/countrycode.Rd | 44 +++------
countrycode-0.17/countrycode/man/countrycode_data.Rd | 78 ++++++++--------
countrycode-0.17/countrycode/man/countrycode_test.Rd | 8 +
14 files changed, 153 insertions(+), 148 deletions(-)
Title: Linear regression based on linear structure between covariates
Diff between CorReg versions 0.14.5 dated 2014-05-13 and 0.15.0 dated 2014-07-15
Description: Linear regression based on a recursive structural equation model
(explicit correlations) found by a MCMC algorithm. It permits to face
highly correlated covariates. Variable selection is included (by lasso,
elasticnet, etc.). It also provides some graphical tools for basic
statistics.
Author: Clement THERY [aut, cre],
Christophe BIERNACKI [ctb],
Gaetan LORIDANT [ctb],
Florian WATRIN [ctb],
Quentin GRIMONPREZ [ctb],
Vincent KUBICKI [ctb]
Maintainer: Clement THERY
DESCRIPTION | 11 -
MD5 | 105 +++++++++------
NAMESPACE | 6
R/CorReg-package.R | 2
R/Estep.R |only
R/Gibbs.R |only
R/Gibbs_X_ij_IF.R |only
R/Gibbs_X_ij_IR.R |only
R/Mstep.R |only
R/OLS.R | 127 +++++++++---------
R/SEM.R |only
R/Terminator.R |only
R/bender.R |only
R/compass.R |only
R/correg.R | 27 ++--
R/density_estimation.R | 57 ++++++--
R/fillmiss.R | 78 +++++------
R/hatB.R | 27 ++--
R/loglikcond.R |only
R/matplot_zone.R |only
R/meilleur_lars.R | 2
R/missing_penalty.R |only
R/mixture_generator.R | 310 ++++++++++++++++++++++++----------------------
R/muiZ.R |only
R/searchZ.R | 20 +-
R/showdata.R | 4
R/tik.R |only
R/victory_int.R |only
man/BicZ.Rd | 2
man/BicZcurve.Rd | 2
man/CVMSE.Rd | 2
man/CorReg-package.Rd | 4
man/Estep.Rd |only
man/MSEZ.Rd | 2
man/MSE_loc.Rd | 2
man/OLS.Rd | 2
man/ProbaZ.Rd | 2
man/R2Z.Rd | 2
man/Terminator.Rd |only
man/WhoIs.Rd | 2
man/Winitial.Rd | 2
man/Y_generator.Rd | 2
man/cleanYtest.Rd | 2
man/cleanZ.Rd | 2
man/cleanZR2.Rd | 2
man/cleancolZ.Rd | 2
man/compare_beta.Rd | 2
man/compare_sign.Rd | 2
man/compare_struct.Rd | 2
man/compare_zero.Rd | 2
man/confint_coef.Rd | 2
man/correg.Rd | 6
man/density_estimation.Rd | 6
man/fillmiss.Rd |only
man/hatB.Rd | 6
man/matplot_zone.Rd |only
man/mixture_generator.Rd | 6
man/readY.Rd | 2
man/readZ.Rd | 2
man/recursive_tree.Rd | 2
man/searchZ.Rd | 2
man/searchZ_sparse.Rd | 2
man/showdata.Rd | 2
63 files changed, 482 insertions(+), 374 deletions(-)
Title: Model selection and multimodel inference based on (Q)AIC(c)
Diff between AICcmodavg versions 1.35 dated 2013-11-18 and 2.00 dated 2014-07-15
Description: This package includes functions to create model selection tables based on Akaike's information criterion (AIC) and the second-order AIC (AICc), as well as their quasi-likelihood counterparts (QAIC, QAICc). The package also features functions to conduct classic model averaging (multimodel inference) for a given parameter of interest or predicted values, as well as a shrinkage version of model averaging parameter estimates. Other handy functions enable the computation of relative variable importance, evidence ratios, and confidence sets for the best model. The present version works with Cox proportional hazards models and conditional logistic regression ('coxph' and 'coxme' classes), linear models ('lm' class), generalized linear models ('glm', 'vglm', and 'zeroinfl' classes), linear models fit by generalized least squares ('gls' class), linear mixed models ('lme' class), generalized linear mixed models ('mer' and 'merMod' classes), multinomial and ordinal logistic regressions ('multinom'}, 'polr', 'clm', and 'clmm' classes), robust regression models ('rlm' class), nonlinear models ('nls' class), and nonlinear mixed models ('nlme' and 'nlmer' classes). The package also supports various models of 'unmarkedFit' and 'maxLikeFit' classes estimating demographic parameters after accounting for imperfect detection probabilities. Some functions also allow the creation of model selection tables for Bayesian models of the 'bugs' and 'rjags' classes.
Author: Marc J. Mazerolle
Maintainer: Marc J. Mazerolle
AICcmodavg-1.35/AICcmodavg/R/AICc.clm.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.clmm.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.coxph.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.glm.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.gls.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.lme.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.mer.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.mult.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.nlme.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.nls.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.polr.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.rlm.R |only
AICcmodavg-1.35/AICcmodavg/R/AICc.unmarked.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.clm.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.clmm.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.coxph.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.glm.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.gls.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.lme.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.mer.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.mult.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.nlme.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.nls.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.polr.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.rlm.R |only
AICcmodavg-1.35/AICcmodavg/R/aictab.unmarked.R |only
AICcmodavg-1.35/AICcmodavg/R/extract.LL.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.clm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.clmm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.coxph.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.effect.glm.r |only
AICcmodavg-1.35/AICcmodavg/R/modavg.effect.gls.r |only
AICcmodavg-1.35/AICcmodavg/R/modavg.effect.lme.r |only
AICcmodavg-1.35/AICcmodavg/R/modavg.effect.mer.r |only
AICcmodavg-1.35/AICcmodavg/R/modavg.effect.r |only
AICcmodavg-1.35/AICcmodavg/R/modavg.effect.rlm.r |only
AICcmodavg-1.35/AICcmodavg/R/modavg.effect.unmarked.r |only
AICcmodavg-1.35/AICcmodavg/R/modavg.glm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.gls.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.lme.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.mer.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.mult.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.polr.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.rlm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.clm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.clmm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.coxph.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.glm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.gls.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.lme.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.mer.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.mult.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.polr.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.rlm.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.shrink.unmarked.R |only
AICcmodavg-1.35/AICcmodavg/R/modavg.unmarked.R |only
AICcmodavg-1.35/AICcmodavg/R/modavgpred.R |only
AICcmodavg-1.35/AICcmodavg/R/modavgpred.unmarked.R |only
AICcmodavg-1.35/AICcmodavg/R/mult.comp.r |only
AICcmodavg-1.35/AICcmodavg/R/predictSE.gls.r |only
AICcmodavg-1.35/AICcmodavg/R/predictSE.lme.r |only
AICcmodavg-1.35/AICcmodavg/R/predictSE.mer.r |only
AICcmodavg-1.35/AICcmodavg/R/predictSE.zip.r |only
AICcmodavg-1.35/AICcmodavg/man/extract.LL.Rd |only
AICcmodavg-1.35/AICcmodavg/man/extractSE.mer.Rd |only
AICcmodavg-1.35/AICcmodavg/man/modavg.effect.Rd |only
AICcmodavg-1.35/AICcmodavg/man/modavg.shrink.Rd |only
AICcmodavg-1.35/AICcmodavg/man/modavgpred.Rd |only
AICcmodavg-1.35/AICcmodavg/man/mult.comp.Rd |only
AICcmodavg-1.35/AICcmodavg/man/predictSE.gls.Rd |only
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AICcmodavg-1.35/AICcmodavg/man/predictSE.mer.Rd |only
AICcmodavg-1.35/AICcmodavg/man/predictSE.zip.Rd |only
AICcmodavg-2.00/AICcmodavg/DESCRIPTION | 17
AICcmodavg-2.00/AICcmodavg/MD5 | 154
AICcmodavg-2.00/AICcmodavg/R/AICc.R | 450
AICcmodavg-2.00/AICcmodavg/R/AICcmodavg-deprecated.R |only
AICcmodavg-2.00/AICcmodavg/R/DIC.R | 58
AICcmodavg-2.00/AICcmodavg/R/Nmix.gof.test.r | 15
AICcmodavg-2.00/AICcmodavg/R/aictab.R | 2009 +++-
AICcmodavg-2.00/AICcmodavg/R/boot.wt.r | 651 +
AICcmodavg-2.00/AICcmodavg/R/confset.R | 13
AICcmodavg-2.00/AICcmodavg/R/dictab.r | 117
AICcmodavg-2.00/AICcmodavg/R/evidence.R | 4
AICcmodavg-2.00/AICcmodavg/R/extractLL.R |only
AICcmodavg-2.00/AICcmodavg/R/extractSE.R |only
AICcmodavg-2.00/AICcmodavg/R/importance.R | 2584 ++++-
AICcmodavg-2.00/AICcmodavg/R/mb.gof.test.r | 6
AICcmodavg-2.00/AICcmodavg/R/modavg.R | 7686 +++++++++++++++-
AICcmodavg-2.00/AICcmodavg/R/modavg.utility.r | 37
AICcmodavg-2.00/AICcmodavg/R/modavgEffect.r |only
AICcmodavg-2.00/AICcmodavg/R/modavgPred.R |only
AICcmodavg-2.00/AICcmodavg/R/modavgShrink.R |only
AICcmodavg-2.00/AICcmodavg/R/multComp.r |only
AICcmodavg-2.00/AICcmodavg/R/predictSE.r |only
AICcmodavg-2.00/AICcmodavg/data/bullfrog.rda |only
AICcmodavg-2.00/AICcmodavg/data/salamander.rda |only
AICcmodavg-2.00/AICcmodavg/data/tortoise.rda |only
AICcmodavg-2.00/AICcmodavg/inst/NEWS | 28
AICcmodavg-2.00/AICcmodavg/man/AICc.Rd | 314
AICcmodavg-2.00/AICcmodavg/man/AICcmodavg-deprecated.Rd |only
AICcmodavg-2.00/AICcmodavg/man/AICcmodavg-package.Rd | 120
AICcmodavg-2.00/AICcmodavg/man/DIC.Rd | 37
AICcmodavg-2.00/AICcmodavg/man/Nmix.gof.test.Rd | 4
AICcmodavg-2.00/AICcmodavg/man/aictab.Rd | 265
AICcmodavg-2.00/AICcmodavg/man/boot.wt.Rd | 111
AICcmodavg-2.00/AICcmodavg/man/bullfrog.Rd |only
AICcmodavg-2.00/AICcmodavg/man/c_hat.Rd | 34
AICcmodavg-2.00/AICcmodavg/man/confset.Rd | 63
AICcmodavg-2.00/AICcmodavg/man/dictab.Rd | 52
AICcmodavg-2.00/AICcmodavg/man/evidence.Rd | 16
AICcmodavg-2.00/AICcmodavg/man/extractLL.Rd |only
AICcmodavg-2.00/AICcmodavg/man/extractSE.Rd |only
AICcmodavg-2.00/AICcmodavg/man/fam.link.mer.Rd | 26
AICcmodavg-2.00/AICcmodavg/man/importance.Rd | 223
AICcmodavg-2.00/AICcmodavg/man/mb.gof.test.Rd | 53
AICcmodavg-2.00/AICcmodavg/man/modavg.Rd | 477
AICcmodavg-2.00/AICcmodavg/man/modavg.utility.Rd | 72
AICcmodavg-2.00/AICcmodavg/man/modavgEffect.Rd |only
AICcmodavg-2.00/AICcmodavg/man/modavgPred.Rd |only
AICcmodavg-2.00/AICcmodavg/man/modavgShrink.Rd |only
AICcmodavg-2.00/AICcmodavg/man/multComp.Rd |only
AICcmodavg-2.00/AICcmodavg/man/predictSE.Rd |only
AICcmodavg-2.00/AICcmodavg/man/salamander.Rd |only
AICcmodavg-2.00/AICcmodavg/man/tortoise.Rd |only
126 files changed, 14217 insertions(+), 1479 deletions(-)
Title: Methods for computing spatial, temporal, and spatiotemporal
statistics
Diff between synchrony versions 0.2.2 dated 2014-03-07 and 0.2.3 dated 2014-07-15
Description: Methods for computing spatial, temporal, and spatiotemporal
statistics including: empirical univariate, bivariate and multivariate
variograms; fitting variogram models; phase locking and synchrony analysis;
generating autocorrelated and cross-correlated matrices.
Author: Tarik C. Gouhier
Maintainer: Tarik C. Gouhier
DESCRIPTION | 18 +++++++++---------
MD5 | 14 +++++++-------
R/vario.R | 11 ++++++-----
R/vario.fit.R | 7 ++++---
data/bird.traits.rda |binary
data/pisco.data.rda |binary
inst/CITATION | 26 ++++++++++++--------------
inst/NEWS.Rd | 7 +++++++
8 files changed, 45 insertions(+), 38 deletions(-)
Title: Analyses of Phylogenetics and Evolution
Diff between ape versions 3.1-3 dated 2014-07-12 and 3.1-4 dated 2014-07-15
Description: ape provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading and writing nucleotide sequences, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions call external applications (PhyML, Clustal, T-Coffee, Muscle) whose results are returned into R.
Author: Emmanuel Paradis [aut, cre, cph],
Ben Bolker [aut, cph],
Julien Claude [aut, cph],
Hoa Sien Cuong [aut, cph],
Richard Desper [aut, cph],
Benoit Durand [aut, cph],
Julien Dutheil [aut, cph],
Olivier Gascuel [aut, cph],
Christoph Heibl [aut, cph],
Daniel Lawson [aut, cph],
Vincent Lefort [aut, cph],
Pierre Legendre [aut, cph],
Jim Lemon [aut, cph],
Rosemary McCloskey [aut, cph],
Johan Nylander [aut, cph],
Rainer Opgen-Rhein [aut, cph],
Andrei-Alin Popescu [aut, cph],
Klaus Schliep [aut, cph],
Korbinian Strimmer [aut, cph],
Damien de Vienne [aut, cph]
Maintainer: Emmanuel Paradis
DESCRIPTION | 8
MD5 | 8
NEWS | 3079 ----------------------------------------------------
R/which.edge.R | 4
inst/doc/MoranI.pdf |binary
5 files changed, 13 insertions(+), 3086 deletions(-)
Title: Bayesian spatial survival analysis with parametric proportional
hazards models.
Diff between spatsurv versions 0.9-5 dated 2014-06-25 and 0.9-6 dated 2014-07-15
Description: Survival analysis with parametric proportional hazards models where
the events have been geo-located.
Author: Benjamin M. Taylor and Barry S. Rowlingson
Maintainer: Benjamin M. Taylor
spatsurv-0.9-5/spatsurv/R/likelihoodsPosteriorsPriors.R |only
spatsurv-0.9-5/spatsurv/R/loglikelihoods_and_derivatives.R |only
spatsurv-0.9-5/spatsurv/R/loglikelihoods_and_derivatives_gridded.R |only
spatsurv-0.9-5/spatsurv/R/spatsurvInternals.R |only
spatsurv-0.9-5/spatsurv/R/survexpon.R |only
spatsurv-0.9-5/spatsurv/man/basehazard.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/basehazard.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/cumbasehazard.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/cumbasehazard.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/densityquantile.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/densityquantile.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/derivlogindepGaussianprior.Rd |only
spatsurv-0.9-5/spatsurv/man/exp_ltar.Rd |only
spatsurv-0.9-5/spatsurv/man/gensens.Rd |only
spatsurv-0.9-5/spatsurv/man/getomegatrans.Rd |only
spatsurv-0.9-5/spatsurv/man/gradbasehazard.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/gradbasehazard.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/gradcumbasehazard.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/gradcumbasehazard.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/hessbasehazard.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/hessbasehazard.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/hesscumbasehazard.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/hesscumbasehazard.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/invtransformestimates.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/invtransformestimates.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/labelomegamatrix.Rd |only
spatsurv-0.9-5/spatsurv/man/logindepGaussianprior.Rd |only
spatsurv-0.9-5/spatsurv/man/logindepnormalprior.Rd |only
spatsurv-0.9-5/spatsurv/man/logposterior_exponential_nospat.Rd |only
spatsurv-0.9-5/spatsurv/man/proposalvariance_exponential_nospat.Rd |only
spatsurv-0.9-5/spatsurv/man/survexpon.Rd |only
spatsurv-0.9-5/spatsurv/man/transformestimates.exp.Rd |only
spatsurv-0.9-5/spatsurv/man/transformestimates.weibull.Rd |only
spatsurv-0.9-5/spatsurv/man/weibull_ltar.Rd |only
spatsurv-0.9-6/spatsurv/DESCRIPTION | 10
spatsurv-0.9-6/spatsurv/MD5 | 250 ++--
spatsurv-0.9-6/spatsurv/NAMESPACE | 70 -
spatsurv-0.9-6/spatsurv/NEWS | 30
spatsurv-0.9-6/spatsurv/R/basehazardspec.R |only
spatsurv-0.9-6/spatsurv/R/calibratemcmc.R | 202 +--
spatsurv-0.9-6/spatsurv/R/covarianceFunctions.R | 37
spatsurv-0.9-6/spatsurv/R/exponential.R | 251 +---
spatsurv-0.9-6/spatsurv/R/gompertz.R |only
spatsurv-0.9-6/spatsurv/R/log_posteriors_and_derivatives.R |only
spatsurv-0.9-6/spatsurv/R/log_posteriors_and_derivatives_gridded.R |only
spatsurv-0.9-6/spatsurv/R/makeham.R |only
spatsurv-0.9-6/spatsurv/R/mcmcIterator.R | 4
spatsurv-0.9-6/spatsurv/R/mcmcPriors.R | 88 +
spatsurv-0.9-6/spatsurv/R/nonspatial_log_likelihood_and_derivatives.R |only
spatsurv-0.9-6/spatsurv/R/postprocessing.R | 576 ++++++----
spatsurv-0.9-6/spatsurv/R/spatsurv.R | 16
spatsurv-0.9-6/spatsurv/R/spatsurvMisc.R | 311 +++--
spatsurv-0.9-6/spatsurv/R/survsim.R | 47
spatsurv-0.9-6/spatsurv/R/survspat.R | 162 +-
spatsurv-0.9-6/spatsurv/R/tpow.R |only
spatsurv-0.9-6/spatsurv/R/weibull.R | 301 ++---
spatsurv-0.9-6/spatsurv/R/zzz.R |only
spatsurv-0.9-6/spatsurv/inst |only
spatsurv-0.9-6/spatsurv/man/Et_PP.Rd |only
spatsurv-0.9-6/spatsurv/man/EvalCov.Rd | 10
spatsurv-0.9-6/spatsurv/man/ExponentialCovFct.Rd | 8
spatsurv-0.9-6/spatsurv/man/FFTgrid.Rd | 13
spatsurv-0.9-6/spatsurv/man/GammafromY.Rd | 11
spatsurv-0.9-6/spatsurv/man/MCE.Rd |only
spatsurv-0.9-6/spatsurv/man/NonSpatialLogLikelihood_or_gradient.Rd |only
spatsurv-0.9-6/spatsurv/man/QuadApprox.Rd | 24
spatsurv-0.9-6/spatsurv/man/SpikedExponentialCovFct.Rd | 9
spatsurv-0.9-6/spatsurv/man/YfromGamma.Rd | 11
spatsurv-0.9-6/spatsurv/man/basehazard.Rd |only
spatsurv-0.9-6/spatsurv/man/basehazard.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/baselinehazard.Rd | 35
spatsurv-0.9-6/spatsurv/man/betapriorGauss.Rd | 17
spatsurv-0.9-6/spatsurv/man/checkSurvivalData.Rd | 11
spatsurv-0.9-6/spatsurv/man/circulant.Rd | 5
spatsurv-0.9-6/spatsurv/man/circulant.matrix.Rd | 14
spatsurv-0.9-6/spatsurv/man/circulant.numeric.Rd | 5
spatsurv-0.9-6/spatsurv/man/circulantij.Rd | 9
spatsurv-0.9-6/spatsurv/man/covmodel.Rd | 19
spatsurv-0.9-6/spatsurv/man/cumbasehazard.Rd |only
spatsurv-0.9-6/spatsurv/man/cumbasehazard.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/density_PP.Rd | 7
spatsurv-0.9-6/spatsurv/man/densityquantile.Rd |only
spatsurv-0.9-6/spatsurv/man/densityquantile.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/densityquantile_PP.Rd | 5
spatsurv-0.9-6/spatsurv/man/derivindepGaussianprior.Rd |only
spatsurv-0.9-6/spatsurv/man/distinfo.Rd |only
spatsurv-0.9-6/spatsurv/man/distinfo.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/estimateY.Rd | 18
spatsurv-0.9-6/spatsurv/man/etapriorGauss.Rd | 16
spatsurv-0.9-6/spatsurv/man/exponentialHaz.Rd |only
spatsurv-0.9-6/spatsurv/man/fixedpars.Rd | 16
spatsurv-0.9-6/spatsurv/man/fixmatrix.Rd | 11
spatsurv-0.9-6/spatsurv/man/frailtylag1.Rd | 26
spatsurv-0.9-6/spatsurv/man/gencens.Rd |only
spatsurv-0.9-6/spatsurv/man/getcov.Rd | 18
spatsurv-0.9-6/spatsurv/man/getleneta.Rd | 3
spatsurv-0.9-6/spatsurv/man/getparranges.Rd | 16
spatsurv-0.9-6/spatsurv/man/getsurvdata.Rd | 7
spatsurv-0.9-6/spatsurv/man/gompertzHaz.Rd |only
spatsurv-0.9-6/spatsurv/man/gradbasehazard.Rd |only
spatsurv-0.9-6/spatsurv/man/gradbasehazard.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/gradcumbasehazard.Rd |only
spatsurv-0.9-6/spatsurv/man/gradcumbasehazard.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/grid2spdf.Rd | 11
spatsurv-0.9-6/spatsurv/man/grid2spix.Rd | 11
spatsurv-0.9-6/spatsurv/man/grid2spts.Rd | 11
spatsurv-0.9-6/spatsurv/man/gridY.Rd | 5
spatsurv-0.9-6/spatsurv/man/guess_t.Rd |only
spatsurv-0.9-6/spatsurv/man/hasNext.Rd | 3
spatsurv-0.9-6/spatsurv/man/hasNext.iter.Rd | 7
spatsurv-0.9-6/spatsurv/man/hazard_PP.Rd | 7
spatsurv-0.9-6/spatsurv/man/hazardexceedance.Rd |only
spatsurv-0.9-6/spatsurv/man/hazardpars.Rd | 16
spatsurv-0.9-6/spatsurv/man/hessbasehazard.Rd |only
spatsurv-0.9-6/spatsurv/man/hessbasehazard.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/hesscumbasehazard.Rd |only
spatsurv-0.9-6/spatsurv/man/hesscumbasehazard.basehazardspec.Rd |only
spatsurv-0.9-6/spatsurv/man/indepGaussianprior.Rd |only
spatsurv-0.9-6/spatsurv/man/inference.control.Rd | 28
spatsurv-0.9-6/spatsurv/man/invtransformweibull.Rd |only
spatsurv-0.9-6/spatsurv/man/is.burnin.Rd | 6
spatsurv-0.9-6/spatsurv/man/is.retain.Rd | 3
spatsurv-0.9-6/spatsurv/man/iteration.Rd | 6
spatsurv-0.9-6/spatsurv/man/logPosterior.Rd | 35
spatsurv-0.9-6/spatsurv/man/logPosterior_gridded.Rd | 35
spatsurv-0.9-6/spatsurv/man/loop.mcmc.Rd | 5
spatsurv-0.9-6/spatsurv/man/makehamHaz.Rd |only
spatsurv-0.9-6/spatsurv/man/maxlikparamPHsurv.Rd |only
spatsurv-0.9-6/spatsurv/man/mcmcLoop.Rd | 13
spatsurv-0.9-6/spatsurv/man/mcmcPriors.Rd | 40
spatsurv-0.9-6/spatsurv/man/mcmcProgressNone.Rd | 3
spatsurv-0.9-6/spatsurv/man/mcmcProgressPrint.Rd | 3
spatsurv-0.9-6/spatsurv/man/mcmcProgressTextBar.Rd | 3
spatsurv-0.9-6/spatsurv/man/mcmcpars.Rd | 13
spatsurv-0.9-6/spatsurv/man/nextStep.Rd | 3
spatsurv-0.9-6/spatsurv/man/omegapriorGauss.Rd | 17
spatsurv-0.9-6/spatsurv/man/plotsurv.Rd | 52
spatsurv-0.9-6/spatsurv/man/posteriorcov.Rd | 34
spatsurv-0.9-6/spatsurv/man/predict.mcmcspatsurv.Rd | 50
spatsurv-0.9-6/spatsurv/man/print.mcmc.Rd | 8
spatsurv-0.9-6/spatsurv/man/print.mcmcspatsurv.Rd | 21
spatsurv-0.9-6/spatsurv/man/priorposterior.Rd |only
spatsurv-0.9-6/spatsurv/man/proposalVariance.Rd | 27
spatsurv-0.9-6/spatsurv/man/proposalVariance_gridded.Rd | 27
spatsurv-0.9-6/spatsurv/man/quantile.mcmcspatsurv.Rd | 23
spatsurv-0.9-6/spatsurv/man/randompars.Rd | 16
spatsurv-0.9-6/spatsurv/man/resetLoop.Rd | 3
spatsurv-0.9-6/spatsurv/man/setTxtProgressBar2.Rd | 12
spatsurv-0.9-6/spatsurv/man/setupHazard.Rd | 18
spatsurv-0.9-6/spatsurv/man/simsurv.Rd | 51
spatsurv-0.9-6/spatsurv/man/spatialpars.Rd | 16
spatsurv-0.9-6/spatsurv/man/spatsurv-package.Rd | 37
spatsurv-0.9-6/spatsurv/man/spatsurvVignette.Rd |only
spatsurv-0.9-6/spatsurv/man/summary.mcmc.Rd | 11
spatsurv-0.9-6/spatsurv/man/summary.mcmcspatsurv.Rd | 19
spatsurv-0.9-6/spatsurv/man/surv3d.Rd | 30
spatsurv-0.9-6/spatsurv/man/survival_PP.Rd | 7
spatsurv-0.9-6/spatsurv/man/survspat.Rd | 35
spatsurv-0.9-6/spatsurv/man/tpowHaz.Rd |only
spatsurv-0.9-6/spatsurv/man/transformweibull.Rd |only
spatsurv-0.9-6/spatsurv/man/txtProgressBar2.Rd | 23
spatsurv-0.9-6/spatsurv/man/vcov.mcmcspatsurv.Rd |only
spatsurv-0.9-6/spatsurv/man/weibullHaz.Rd |only
spatsurv-0.9-6/spatsurv/tests/test_sim_ana.R | 17
spatsurv-0.9-6/spatsurv/tests/test_survspat.R | 23
165 files changed, 2076 insertions(+), 1467 deletions(-)
Title: Analyzes clickstreams based on Markov chains
Diff between clickstream versions 1.1.1 dated 2014-05-19 and 1.1.2 dated 2014-07-15
Description: This package allows modeling clickstreams with Markov chains. It supports to model clickstreams as zero-order, first-order or higher-order Markov chains.
Author: Michael Scholz
Maintainer: Michael Scholz
DESCRIPTION | 8 ++++----
MD5 | 16 ++++++++--------
NAMESPACE | 1 -
NEWS | 7 +++++++
R/Clickstream.r | 4 +---
R/Fitting.r | 2 +-
R/MarkovChain.r | 37 ++++---------------------------------
man/MarkovChain-class.Rd | 3 +--
man/fitMarkovChain.Rd | 2 +-
9 files changed, 27 insertions(+), 53 deletions(-)
Title: Helpers for parameters in black-box optimization, tuning and
machine learning.
Diff between ParamHelpers versions 1.2 dated 2014-07-03 and 1.3 dated 2014-07-15
Description: A small package containing useful functions for parameter
descriptions and operations in black-box optimization, tuning
and machine learning.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Bossek [aut],
Daniel Horn [aut]
Maintainer: Bernd Bischl
DESCRIPTION | 20 +
MD5 | 84 ++++---
NAMESPACE | 7
NEWS | 11
R/OptPath.R | 302 ---------------------------
R/OptPathDF.R | 189 ----------------
R/OptPathDF_as_data_frame.R |only
R/OptPathDF_getter.R |only
R/OptPathDF_setter.R |only
R/OptPath_getter.R |only
R/OptPath_setter.R |only
R/aParam.R | 9
R/dfRowsToList.R | 3
R/dropParams.R |only
R/getParamIds.R | 3
R/getParamNr.R | 3
R/isFeasible.R | 13 -
R/makeParamFuns.R | 34 +--
R/repairPoint.R |only
R/sample.R | 3
R/setValueCNames.R |only
man/OptPath.Rd | 1
man/Param.Rd | 15 -
man/addOptPathEl.Rd | 4
man/as.data.frame.OptPathDF.Rd |only
man/dropParams.Rd |only
man/getOptPathBestIndex.Rd | 6
man/getOptPathCol.Rd | 5
man/getOptPathCols.Rd |only
man/getOptPathDOB.Rd | 1
man/getOptPathEOL.Rd | 1
man/getOptPathEl.Rd | 1
man/getOptPathErrorMessages.Rd | 1
man/getOptPathExecTimes.Rd | 1
man/getOptPathLength.Rd | 1
man/getOptPathParetoFront.Rd | 1
man/getOptPathY.Rd | 1
man/isFeasible.Rd | 2
man/repairPoint.Rd |only
man/setOptPathElDOB.Rd | 1
man/setOptPathElEOL.Rd | 1
man/setValueCNames.Rd |only
src/c_dfRowsToList.c | 15 -
tests/testthat/test_OptPath.R | 30 +-
tests/testthat/test_Param.R | 148 ++++++-------
tests/testthat/test_cnames.R |only
tests/testthat/test_convertParamSetToIrace.R | 24 +-
tests/testthat/test_dropParams.R |only
tests/testthat/test_getParamTypeCounts.R | 2
tests/testthat/test_repairPoint.R |only
tests/testthat/test_trafo.R | 8
51 files changed, 281 insertions(+), 670 deletions(-)
Title: Random Forest Classification with Parallel Computing
Diff between ParallelForest versions 1.0.0 dated 2014-07-08 and 1.1.0 dated 2014-07-15
More information about ParallelForest at CRAN
Description: R package implementing random forest classification using parallel computing, built with Fortran and OpenMP in the backend.
Author: Bertram Ieong [aut, cre, cph]
Maintainer: Bertram Ieong
ParallelForest-1.0.0/ParallelForest/R/a_s4classes.r |only
ParallelForest-1.1.0/ParallelForest/DESCRIPTION | 8
ParallelForest-1.1.0/ParallelForest/MD5 | 44 ++--
ParallelForest-1.1.0/ParallelForest/R/1_s4classes.r |only
ParallelForest-1.1.0/ParallelForest/R/2_prep.depvar.r |only
ParallelForest-1.1.0/ParallelForest/R/grow.forest.r | 80 +++++---
ParallelForest-1.1.0/ParallelForest/R/predict.forest.r | 7
ParallelForest-1.1.0/ParallelForest/inst/doc/ParallelForest-intro.R | 23 ++
ParallelForest-1.1.0/ParallelForest/inst/doc/ParallelForest-intro.html | 79 +++++++-
ParallelForest-1.1.0/ParallelForest/inst/doc/ParallelForest-intro.rmd | 57 +++++-
ParallelForest-1.1.0/ParallelForest/man/accessors.forest.rd |only
ParallelForest-1.1.0/ParallelForest/man/forest-class.rd | 29 +--
ParallelForest-1.1.0/ParallelForest/man/grow.forest.rd | 14 -
ParallelForest-1.1.0/ParallelForest/src/Makevars | 39 ++++
ParallelForest-1.1.0/ParallelForest/src/classification.f90 | 89 +++++-----
ParallelForest-1.1.0/ParallelForest/src/forest_parallel.f90 | 36 +++-
ParallelForest-1.1.0/ParallelForest/src/grow_forest_wrapper.f90 | 5
ParallelForest-1.1.0/ParallelForest/src/grow_tree_wrapper.f90 | 12 -
ParallelForest-1.1.0/ParallelForest/src/predict_forest_wrapper.f90 | 36 +++-
ParallelForest-1.1.0/ParallelForest/src/predict_tree_wrapper.f90 | 4
ParallelForest-1.1.0/ParallelForest/src/random_utils.f90 | 50 +++--
ParallelForest-1.1.0/ParallelForest/src/sort_utils.f90 | 14 +
ParallelForest-1.1.0/ParallelForest/src/tree_utils.f90 | 60 ++++--
ParallelForest-1.1.0/ParallelForest/src/utils.f90 | 42 ++++
ParallelForest-1.1.0/ParallelForest/vignettes/ParallelForest-intro.rmd | 57 +++++-
25 files changed, 551 insertions(+), 234 deletions(-)
Permanent link
Title: Extension to ggplot2.
Diff between GGally versions 0.4.6 dated 2014-05-21 and 0.4.7 dated 2014-07-15
Description: GGally is designed to be a helper to ggplot2. It contains
templates for different plots to be combined into a plot matrix, a parallel
coordinate plot function, as well as a function for making a network plot.
Author: Barret Schloerke
Maintainer: Barret Schloerke
DESCRIPTION | 18 ++---
MD5 | 99 +++++++++++++++--------------
NAMESPACE | 3
NEWS | 28 ++++++++
R/gg-plots.r | 13 +++
R/ggcorr.r | 120 ++++++++++++++++++++++-------------
R/ggnet.r | 135 ++++++++++++++++++++++++++++------------
R/ggpairs.r | 8 +-
R/ggsurv.r |only
README.md |only
man/addAndOverwriteAes.Rd | 2
man/eval_ggpair.Rd | 2
man/find_plot_type.Rd | 2
man/get.VarTypes.Rd | 2
man/getPlot.Rd | 2
man/get_plot_type.Rd | 2
man/get_x_axis_labels.Rd | 2
man/ggally_barDiag.Rd | 2
man/ggally_blank.Rd | 2
man/ggally_box.Rd | 2
man/ggally_cor.Rd | 2
man/ggally_density.Rd | 2
man/ggally_densityDiag.Rd | 2
man/ggally_denstrip.Rd | 2
man/ggally_diagAxis.Rd | 2
man/ggally_dot.Rd | 2
man/ggally_dotAndBox.Rd | 2
man/ggally_facetbar.Rd | 2
man/ggally_facetdensity.Rd | 2
man/ggally_facetdensitystrip.Rd | 2
man/ggally_facethist.Rd | 2
man/ggally_points.Rd | 2
man/ggally_ratio.Rd | 2
man/ggally_smooth.Rd | 2
man/ggally_text.Rd | 2
man/ggcorr.Rd | 39 ++++++++---
man/ggfluctuation2.Rd | 2
man/ggnet.Rd | 47 ++++++++-----
man/ggpairs.Rd | 6 +
man/ggparcoord.Rd | 2
man/ggsurv.Rd |only
man/happy.Rd | 2
man/is_blank_plot.Rd | 2
man/make_ggpair_text.Rd | 2
man/mapping_color_fill.Rd | 2
man/plot_types.Rd | 2
man/print.ggpairs.Rd | 2
man/putPlot.Rd | 6 +
man/scagOrder.Rd | 2
man/singleClassOrder.Rd | 2
man/skewness.Rd | 2
man/vplayout.Rd | 2
52 files changed, 380 insertions(+), 216 deletions(-)
Title: Differential Functioning of Items and Tests (DFIT) framework
analyses.
Diff between DFIT versions 1.0 dated 2014-05-20 and 1.0-1 dated 2014-07-15
Description: A set of functions to perform Raju, van der Linden and Fleer's
(1995) Differential Item and Item Functioning (DFIT) analyses. It includes
functions to use the Monte Carlo Item Parameter Replication (IPR) approach
(Oshima, Raju, & Nanda, 2006) for obtaining the associated statistical
significance tests cut-off points. They may also be used for a priori and
post-hoc power calculations.
Author: Victor H. Cervantes
Maintainer: Victor H. Cervantes
DESCRIPTION | 10
MD5 | 87 +++----
NAMESPACE | 3
NEWS |only
R/DFIT.R | 1
R/IPR.R | 94 +++++---
R/MantelHaenszel.R | 13 -
R/NCDIF.R | 10
R/RajuAreas.R | 2
R/data.R | 4
demo/00Index | 12 -
demo/MantelHaenszel.R | 17 -
demo/NCDIF.R | 115 ---------
demo/powerExample.R | 458 ++++++++++++++++++++++++---------------
inst/CITATION | 4
man/Ase1pl.Rd | 32 --
man/Ase2pl.Rd | 29 --
man/Ase3pl.Rd | 29 --
man/AseIrt.Rd | 33 --
man/Bound3PlIpr.Rd | 18 -
man/Calculate1plProb.Rd | 23 -
man/Calculate2plProb.Rd | 24 --
man/Calculate3plProb.Rd | 25 --
man/CalculateGrmExp.Rd | 26 --
man/CalculateItemDifferences.Rd | 27 --
man/CalculatePcmExp.Rd | 26 --
man/Cdif.Rd | 58 +---
man/CrossedProbabilities.Rd | 30 --
man/CutoffIpr.Rd | 198 +++++-----------
man/DFIT.Rd | 117 +++------
man/DeltaMhIrt.Rd | 19 -
man/Dtf.Rd | 63 +----
man/Ipr.Rd | 28 --
man/IprMh.Rd | 76 ++----
man/IprNcdif.Rd | 58 +---
man/IprSam.Rd | 36 ---
man/IprUam.Rd | 36 ---
man/IrtMh.Rd | 41 +--
man/Ncdif.Rd | 58 +---
man/PlotNcdif.Rd | 80 ++----
man/ProductProbabilities.Rd | 23 -
man/SignedArea.Rd | 33 --
man/UnsignedArea.Rd | 33 --
man/dichotomousItemParameters.Rd | 17 -
man/polytomousItemParameters.Rd | 19 -
45 files changed, 849 insertions(+), 1296 deletions(-)