Title: IM Client for R
Diff between RMessenger versions 0.1.4 dated 2014-03-27 and 0.1.5 dated 2014-07-16
Description: RMessenger contains 2 part of works:
- A derivative work of libstrophe(http://strophe.im/libstrophe/)
- A sole work of wrapping libstrophe into R
For any suggestion or bug report, please visit
https://github.com/wush978/RMessenger
Author: Wush Wu, Jack Moffitt and Patrick Powell
Maintainer: Wush Wu
RMessenger-0.1.4/RMessenger/src/libstrophe/snprintf.c |only
RMessenger-0.1.5/RMessenger/DESCRIPTION | 8
RMessenger-0.1.5/RMessenger/MD5 | 12
RMessenger-0.1.5/RMessenger/configure | 428 ++++------------
RMessenger-0.1.5/RMessenger/configure.ac | 34 +
RMessenger-0.1.5/RMessenger/src/Makevars.in | 4
RMessenger-0.1.5/RMessenger/src/libstrophe/conn.c | 2
RMessenger-0.1.5/RMessenger/src/libstrophe/snprintf.cpp |only
8 files changed, 173 insertions(+), 315 deletions(-)
Title: Functions to make surveys processing easier.
Diff between questionr versions 0.4 dated 2014-03-28 and 0.4.1 dated 2014-07-16
Description: This package provides some convenience functions to make the
processing and analysis of surveys easier.
Author: Julien Barnier [aut, cre],
François Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier
DESCRIPTION | 12 ++++++------
MD5 | 40 ++++++++++++++++++++++++----------------
NAMESPACE | 2 ++
NEWS | 5 +++++
R/icut.r | 19 +++++++++++--------
R/imca.r |only
R/iorder.R | 20 +++++++++++---------
R/irec.r | 20 +++++++++++---------
data/happy.rda |binary
data/hdv2003.rda |binary
data/rp99.rda |binary
inst/icut/server.R | 20 +++++++++++++++++++-
inst/icut/ui.R | 2 ++
inst/imca |only
inst/iorder/ui.R | 2 +-
inst/irec/server.R | 2 +-
man/icut.Rd | 6 +++---
man/imca.Rd |only
man/iorder.Rd | 6 +++---
man/irec.Rd | 6 +++---
20 files changed, 102 insertions(+), 60 deletions(-)
Title: Intermittent Time Series Forecasting
Diff between tsintermittent versions 1.1 dated 2014-07-03 and 1.2 dated 2014-07-16
More information about tsintermittent at CRAN
Description: This package contains functions for analysing and forecasting intermittent demand/slow moving items time series.
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes
ChangeLog | 11 ++++++++---
DESCRIPTION | 9 +++++----
MD5 | 10 ++++++----
NAMESPACE | 4 ++--
R/imapa.R |only
man/idclass.Rd | 2 +-
man/imapa.Rd |only
7 files changed, 22 insertions(+), 14 deletions(-)
Permanent link
Title: Traveling Salesperson Problem (TSP)
Diff between TSP versions 1.0-8 dated 2013-09-06 and 1.0-9 dated 2014-07-16
Description: Basic infrastructure and some algorithms for the traveling
salesperson problem (also traveling salesman problem; TSP).
The package provides some simple algorithms and
an interface to Concorde, the currently fastest TSP solver. Concorde
itself is not included in the package and has to be obtained separately.
Author: Michael Hahsler [aut, cre, cph],
Kurt Hornik [aut, cph]
Maintainer: Michael Hahsler
DESCRIPTION | 10 ++---
MD5 | 29 ++++++++-------
R/solve_TSP.R | 93 +++++++++++++++++++++++++++++++--------------------
R/tsp_insertion.R | 12 +++---
build |only
data/USCA312.rda |binary
data/USCA312_map.rda |binary
data/USCA50.rda |binary
inst/NEWS | 23 ++++++++----
inst/doc/TSP.R | 46 ++++++++-----------------
inst/doc/TSP.Rnw | 20 +---------
inst/doc/TSP.pdf |binary
man/TSPLIB.Rd | 2 -
man/solve_TSP.Rd | 10 ++---
src/insertion_cost.c | 3 +
vignettes/TSP.Rnw | 20 +---------
16 files changed, 126 insertions(+), 142 deletions(-)
Title: Phase Plane Analysis of One and Two Dimensional Autonomous ODE
Systems
Diff between phaseR versions 1.2 dated 2013-10-09 and 1.3 dated 2014-07-16
Description: phaseR is an R package for the qualitative analysis of one and
two dimensional autonomous ODE systems, using phase plane methods. Programs
are available to identify and classify equilibrium points, plot the
direction field, and plot trajectories for multiple initial conditions. In
the one dimensional case, a program is also available to plot the phase
portrait. Whilst in the two dimensional case, additionally a program is
available to plot nullclines. Many example systems are provided for the
user.
Author: Michael J. Grayling
Maintainer: Michael J. Grayling
DESCRIPTION | 27 +++---
MD5 | 132 ++++++++++++++++-----------------
NAMESPACE | 1
R/SIR.R | 7 -
R/competition.R | 7 -
R/example1.R | 7 -
R/example10.R | 11 +-
R/example11.R | 7 -
R/example12.R | 9 +-
R/example13.R | 11 +-
R/example14.R | 9 +-
R/example15.R | 9 +-
R/example2.R | 5 -
R/example3.R | 7 -
R/example4.R | 7 -
R/example5.R | 7 -
R/example6.R | 7 -
R/example7.R | 7 -
R/example8.R | 7 -
R/example9.R | 7 -
R/exponential.R | 5 -
R/flowField.R | 113 ++++++++++++++++------------
R/lindemannMechanism.R | 11 +-
R/logistic.R | 7 -
R/lotkaVolterra.R | 25 +++---
R/monomolecular.R | 7 -
R/nullclines.R | 48 ++++++------
R/numericalSolution.R | 51 ++++++------
R/phasePortrait.R | 97 +++++++++++++-----------
R/simplePendulum.R | 7 -
R/stability.R | 60 ++++++++-------
R/trajectory.R | 81 +++++++++++---------
R/vanDerPol.R | 9 +-
R/vonBertalanffy.R | 10 +-
inst/doc/phaseR_Exercise_Solutions.pdf |binary
inst/doc/phaseR_Guide.pdf |binary
man/SIR.Rd | 3
man/competition.Rd | 3
man/example1.Rd | 2
man/example10.Rd | 3
man/example11.Rd | 19 ++--
man/example12.Rd | 19 ++--
man/example13.Rd | 3
man/example14.Rd | 3
man/example15.Rd | 3
man/example2.Rd | 16 ++--
man/example3.Rd | 3
man/example4.Rd | 15 +--
man/example5.Rd | 18 +---
man/example6.Rd | 3
man/example7.Rd | 3
man/example8.Rd | 3
man/example9.Rd | 18 +---
man/exponential.Rd | 2
man/flowField.Rd | 42 +++++-----
man/lindemannMechanism.Rd | 3
man/logistic.Rd | 21 ++---
man/lotkaVolterra.Rd | 5 -
man/nullclines.Rd | 34 ++++----
man/numericalSolution.Rd | 13 +--
man/phasePortrait.Rd | 22 +++--
man/phaseR-package.Rd | 6 -
man/simplePendulum.Rd | 19 ++--
man/stability.Rd | 26 +++---
man/trajectory.Rd | 38 ++++-----
man/vanDerPol.Rd | 25 ++----
man/vonBertalanffy.Rd | 2
67 files changed, 604 insertions(+), 613 deletions(-)
Title: Performs the processing and normalisation of Nanostring miRNA
and mRNA data
Diff between NAPPA versions 1.0 dated 2013-10-29 and 2.0 dated 2014-07-16
Description: Enables the processing and normalisation of the standard mRNA data output from the Nanostring nCounter software
Author: Chris Harbron, Mark Wappett
Maintainer: Mark Wappett
NAPPA-1.0/NAPPA/data/NAPPA_example_input.rda |only
NAPPA-1.0/NAPPA/man/NAPPA_example_input.Rd |only
NAPPA-2.0/NAPPA/DESCRIPTION | 12
NAPPA-2.0/NAPPA/MD5 | 25 -
NAPPA-2.0/NAPPA/NAMESPACE | 2
NAPPA-2.0/NAPPA/R/Calibrate.Sigmoid.Curve.R |only
NAPPA-2.0/NAPPA/R/NAPPA.R | 458 ++++++++-----------------
NAPPA-2.0/NAPPA/build |only
NAPPA-2.0/NAPPA/data/NS.Dilution.RData |only
NAPPA-2.0/NAPPA/data/NS.Lung.RData |only
NAPPA-2.0/NAPPA/data/nsolver.Dilution.RData |only
NAPPA-2.0/NAPPA/inst |only
NAPPA-2.0/NAPPA/man/NAPPA-package.Rd | 6
NAPPA-2.0/NAPPA/man/NAPPA.Rd | 100 ++++-
NAPPA-2.0/NAPPA/man/NS.Dilution.Rd |only
NAPPA-2.0/NAPPA/man/NS.Lung.Rd |only
NAPPA-2.0/NAPPA/man/calibrate.sigmoid.curve.Rd |only
NAPPA-2.0/NAPPA/man/nsolver.Dilution.Rd |only
NAPPA-2.0/NAPPA/vignettes |only
19 files changed, 268 insertions(+), 335 deletions(-)
Title: Order Restricted Clustering for Microarray Experiments
Diff between ORCME versions 2.0 dated 2014-05-22 and 2.0.1 dated 2014-07-16
Description: This package provides clustering of genes with similar
dose response (or time course) profiles. It implements the method
described by Lin et al. (2012).
Author: Adetayo Kasim, Martin Otava, Tobias Verbeke
Maintainer: Martin Otava
DESCRIPTION | 12 ++++++------
MD5 | 10 +++++-----
NEWS | 3 ++-
R/plotCluster.R | 26 ++++++++++++++++++--------
data/doseData.rda |binary
data/geneData.rda |binary
6 files changed, 31 insertions(+), 20 deletions(-)
Title: Statistical functions for the Delaporte distribution
Diff between Delaporte versions 2.1-1 dated 2014-04-07 and 2.2-0 dated 2014-07-16
Description: Provides probability mass, distribution, quantile, random variate generation, and method of moments parameter estimation functions for the Delaporte distribution.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler
DESCRIPTION | 8 -
MD5 | 20 +--
R/Delaporte.R | 21 ++-
R/RcppExports.R | 4
inst/NEWS.Rd | 16 ++
man/Delaporte-package.Rd | 4
man/Delaporte.Rd | 31 ++--
src/Delaporte.cpp | 279 ++++++++++++++++++++++----------------------
src/RcppExports.cpp | 46 +++----
tests/testthat/RawTest.csv | 76 +++++------
tests/testthat/test-delap.r | 65 +++++++---
11 files changed, 312 insertions(+), 258 deletions(-)
Title: Principal Covariates Regression
Diff between PCovR versions 2.4 dated 2014-02-28 and 2.5 dated 2014-07-16
Description: Analyzing regression data with many and/or highly collinear predictor variables, by simultaneously reducing the predictor variables to a limited number of components and regressing the criterion variables on these components. Several rotation options are provided in this package, as well as model selection options.
Author: Marlies Vervloet [aut, cre],
Henk Kiers [aut],
Eva Ceulemans [ctb]
Maintainer: Marlies Vervloet
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/plot.pcovr.R | 38 ++++++++++++++++++++------------------
man/PCovR-package.Rd | 2 +-
man/pcovr.Rd | 7 +++++++
5 files changed, 36 insertions(+), 27 deletions(-)
Title: Pretty scientific plotting with minor-tick and log minor-tick
support
Diff between magicaxis versions 1.8 dated 2014-05-13 and 1.9 dated 2014-07-16
Description: Functions to make useful (and pretty) plots for scientific plotting. Additional plotting features are added for base plotting, with particular emphasis on making attractive log axis plots.
Author: Aaron Robotham
Maintainer: Aaron Robotham
DESCRIPTION | 8 ++++----
MD5 | 20 ++++++++++----------
NEWS | 23 +++++++++++++++++++++--
R/magaxis.R | 2 +-
R/magbar.R | 16 ++++++++++++----
R/maglab.R | 10 +++++++---
R/magmap.R | 7 ++++---
man/magbar.Rd | 8 +++++++-
man/magicaxis-package.Rd | 4 ++--
man/magmap.Rd | 15 +++++++++------
man/magrun.Rd | 2 +-
11 files changed, 78 insertions(+), 37 deletions(-)
Title: Functions, data and code for count data.
Diff between COUNT versions 1.2.3 dated 2012-08-01 and 1.3.0 dated 2014-07-16
Description: Functions, data and code for Hilbe, J.M. 2011. Negative Binomial Regression, 2-nd Edition (Cambridge University Press) and Hilbe, J.M. 2014. Modeling Count Data (Cambridge University Press).
Author: Joseph M Hilbe
Maintainer: Andrew Robinson
COUNT-1.2.3/COUNT/data/titgrp.rda |only
COUNT-1.2.3/COUNT/man/titgrp.Rd |only
COUNT-1.3.0/COUNT/DESCRIPTION | 15 ++-
COUNT-1.3.0/COUNT/MD5 | 74 ++++++++++--------
COUNT-1.3.0/COUNT/NAMESPACE | 14 +--
COUNT-1.3.0/COUNT/data/affairs.rda |binary
COUNT-1.3.0/COUNT/data/azcabgptca.rda |only
COUNT-1.3.0/COUNT/data/azdrg112.rda |binary
COUNT-1.3.0/COUNT/data/azpro.rda |binary
COUNT-1.3.0/COUNT/data/azprocedure.rda |only
COUNT-1.3.0/COUNT/data/badhealth.rda |binary
COUNT-1.3.0/COUNT/data/fasttrakg.rda |binary
COUNT-1.3.0/COUNT/data/fishing.rda |only
COUNT-1.3.0/COUNT/data/lbw.rda |binary
COUNT-1.3.0/COUNT/data/lbwgrp.rda |binary
COUNT-1.3.0/COUNT/data/loomis.rda |binary
COUNT-1.3.0/COUNT/data/mdvis.rda |binary
COUNT-1.3.0/COUNT/data/medpar.rda |binary
COUNT-1.3.0/COUNT/data/nuts.rda |only
COUNT-1.3.0/COUNT/data/rwm.rda |binary
COUNT-1.3.0/COUNT/data/rwm1984.rda |only
COUNT-1.3.0/COUNT/data/rwm5yr.rda |binary
COUNT-1.3.0/COUNT/data/ships.rda |binary
COUNT-1.3.0/COUNT/data/smoking.rda |only
COUNT-1.3.0/COUNT/data/titanic.rda |binary
COUNT-1.3.0/COUNT/data/titanicgrp.rda |only
COUNT-1.3.0/COUNT/man/affairs.Rd | 8 +-
COUNT-1.3.0/COUNT/man/azcabgptca.Rd |only
COUNT-1.3.0/COUNT/man/azprocedure.Rd |only
COUNT-1.3.0/COUNT/man/fasttrakg.Rd | 98 +++++++++++-------------
COUNT-1.3.0/COUNT/man/fishing.Rd |only
COUNT-1.3.0/COUNT/man/logit_syn.Rd | 2
COUNT-1.3.0/COUNT/man/medpar.Rd | 113 ++++++++++++++--------------
COUNT-1.3.0/COUNT/man/nb1_syn.Rd | 1
COUNT-1.3.0/COUNT/man/nb2.obs.pred.Rd | 2
COUNT-1.3.0/COUNT/man/nb2_syn.Rd | 2
COUNT-1.3.0/COUNT/man/nuts.Rd |only
COUNT-1.3.0/COUNT/man/poi.obs.pred.Rd | 1
COUNT-1.3.0/COUNT/man/poisson_syn.Rd | 1
COUNT-1.3.0/COUNT/man/probit_syn.Rd | 1
COUNT-1.3.0/COUNT/man/rwm1984.Rd |only
COUNT-1.3.0/COUNT/man/rwm5yr.Rd | 130 ++++++++++++++++-----------------
COUNT-1.3.0/COUNT/man/ships.Rd | 10 +-
COUNT-1.3.0/COUNT/man/smoking.Rd |only
COUNT-1.3.0/COUNT/man/titanic.Rd | 80 +++++++++-----------
COUNT-1.3.0/COUNT/man/titanicgrp.Rd |only
46 files changed, 276 insertions(+), 276 deletions(-)
Title: R interface to the phreeqc geochemical modeling program
Diff between phreeqc versions 1.0-8809 dated 2014-06-30 and 1.0-8847 dated 2014-07-16
Description: R interface to PHREEQC (Version 3). PHREEQC is a geochemical
modeling program developed by the US Geological Survey that is designed
to perform a wide variety of aqueous geochemical calculations,
including speciation, batch-reaction, one-dimensional
reactive-transport, and inverse geochemical calculations.
Author: S.R. Charlton, D.L. Parkhurst, and C.A.J. Appelo, with contributions
from D. Gillespie for Chipmunk BASIC and S.D. Cohen, A.C. Hindmarsh,
R. Serban, D. Shumaker, and A.G. Taylor for CVODE/SUNDIALS
Maintainer: S.R. Charlton
DESCRIPTION | 6 +-
MD5 | 84 +++++++++++++++++-----------------
R/phreeqc.R | 6 +-
man/phrGetErrorStrings.Rd | 4 -
man/phreeqc-package.Rd | 2
src/CSelectedOutput.cpp | 2
src/IPhreeqc.cpp | 6 +-
src/R.cpp | 59 ++++++++++--------------
src/phreeqcpp/Exchange.cpp | 4 -
src/phreeqcpp/GasComp.cpp | 6 +-
src/phreeqcpp/GasPhase.cpp | 4 -
src/phreeqcpp/KineticsComp.cpp | 2
src/phreeqcpp/PBasic.cpp | 11 ++++
src/phreeqcpp/PHRQ_io.cpp | 25 +++++-----
src/phreeqcpp/PPassemblageComp.cpp | 4 -
src/phreeqcpp/Phreeqc.cpp | 8 ++-
src/phreeqcpp/Phreeqc.h | 1
src/phreeqcpp/ReadClass.cpp | 2
src/phreeqcpp/StorageBinList.cpp | 2
src/phreeqcpp/Surface.cpp | 3 -
src/phreeqcpp/cl1.cpp | 30 +++++++-----
src/phreeqcpp/cvdense.cpp | 6 ++
src/phreeqcpp/cvode.cpp | 11 ++--
src/phreeqcpp/cxxKinetics.cpp | 4 -
src/phreeqcpp/dumper.cpp | 2
src/phreeqcpp/integrate.cpp | 3 -
src/phreeqcpp/inverse.cpp | 7 --
src/phreeqcpp/isotopes.cpp | 20 ++------
src/phreeqcpp/kinetics.cpp | 7 +-
src/phreeqcpp/mainsubs.cpp | 6 --
src/phreeqcpp/model.cpp | 6 +-
src/phreeqcpp/nvector_serial.cpp | 4 -
src/phreeqcpp/pitzer.cpp | 17 ++-----
src/phreeqcpp/prep.cpp | 9 +--
src/phreeqcpp/print.cpp | 4 -
src/phreeqcpp/read.cpp | 11 +---
src/phreeqcpp/readtr.cpp | 89 +++++++++++++++++++++----------------
src/phreeqcpp/runner.cpp | 2
src/phreeqcpp/sit.cpp | 17 ++-----
src/phreeqcpp/smalldense.cpp | 3 -
src/phreeqcpp/spread.cpp | 3 -
src/phreeqcpp/tally.cpp | 22 ---------
src/phreeqcpp/transport.cpp | 13 -----
43 files changed, 242 insertions(+), 295 deletions(-)
Title: Curry, Compose, and other higher-order functions
Diff between functional versions 0.4 dated 2013-04-04 and 0.6 dated 2014-07-16
Description: Curry, Compose, and other higher-order functions
Author: Peter Danenberg
Maintainer: Peter Danenberg
DESCRIPTION | 9 ++++-----
MD5 | 18 ++++++++++--------
NAMESPACE | 3 +++
R/functional.R | 23 +++++++++++++++++++++++
man/Compose.Rd | 11 ++++++-----
man/Curry.Rd | 13 +++++++------
man/CurryL.Rd | 11 ++++++-----
man/Identity.Rd | 9 +++++----
man/Negate.Rd | 11 ++++++-----
man/Swap.Rd |only
man/multi.argument.Compose.Rd |only
11 files changed, 70 insertions(+), 38 deletions(-)