Package soilphysics updated to version 1.1 with previous version 1.0 dated 2014-01-25

Title: Soil Physical Analysis
Description: Basic and model-based soil physical analyses.
Author: Anderson Rodrigo da Silva, Renato Paiva de Lima
Maintainer: Anderson Rodrigo da Silva

Diff between soilphysics versions 1.0 dated 2014-01-25 and 1.1 dated 2014-07-17

 DESCRIPTION                |   14 +++++-----
 MD5                        |   27 ++++++++++----------
 NAMESPACE                  |    8 +++++-
 NEWS                       |only
 R/Sindex.r                 |   58 ++++++++++++++++++++++++++++++++++++---------
 R/criticalmoisture.R       |   19 ++++++++++----
 R/maxcurv.R                |   22 ++++++++++++-----
 man/SSlbc.Rd               |    2 -
 man/Sindex.Rd              |   16 ++++++++++--
 man/fitlbc.Rd              |    2 -
 man/getInitiallbc.Rd       |    2 -
 man/maxcurv.Rd             |    1 
 man/sigmaP.Rd              |    4 +--
 man/soilphysics-package.Rd |   16 ++++++------
 man/soilwater.Rd           |    4 +--
 15 files changed, 135 insertions(+), 60 deletions(-)

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Package SMNCensReg updated to version 2.4 with previous version 2.3 dated 2014-03-17

Title: Fitting univariate censored regression model under the scale mixture of normal distributions.
Description: Fit univariate right, left or interval censored regression model under the scale mixture of normal distributions.
Author: Aldo M. Garay , Victor Lachos , and Monique Bettio Massuia
Maintainer: Aldo M. Garay

Diff between SMNCensReg versions 2.3 dated 2014-03-17 and 2.4 dated 2014-07-17

 DESCRIPTION |   15 +++++-------
 MD5         |    6 ++---
 NAMESPACE   |    6 ++---
 R/EM_SMN.r  |   72 ++++++++++++++++++++++++++++++++++++++++++++++++++++--------
 4 files changed, 76 insertions(+), 23 deletions(-)

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New package RNeXML with initial version 1.1-0
Package: RNeXML
Type: Package
Title: Implement semantically rich I/O for NeXML format
Version: 1.1-0
Date: 2013-06-30
Authors@R: c(person("Carl", "Boettiger", role = c("cre", "aut"), email="cboettig@gmail.com"), person("Scott", "Chamberlain", role = "aut"), person("Hilmar", "Lapp", role = "aut"), person("Kseniia", "Shumelchyk", role = "aut"), person("Rutger", "Vos", role = "aut"))
Description: R package that allows access to phyloinformatic data in NeXML format. The package should add new functionality to R such as the possibility to manipulate NeXML objects in more various and refined way and compatibility with 'ape' objects. Note that the Sxslt package suggested can be installed from the Omegahat repository, though it can also be obtained from https://github.com/cboettig/Sxslt
License: BSD_3_clause + file LICENSE
Additional_repositories: http://www.omegahat.org/R
VignetteBuilder: knitr
Suggests: rrdf (>= 2.0.2), geiger (>= 2.0), phytools (>= 0.3.93), knitr (>= 1.5), testthat (>= 0.8.1), rfigshare (>= 0.3.0), knitcitations (>= 1.0.1), Sxslt
Depends: R (>= 3.0.0), ape (>= 3.1), methods (>= 3.0.0)
Imports: XML (>= 3.95), plyr (>= 1.8), taxize (>= 0.2.2), reshape2 (>= 1.2.2), httr (>= 0.3), uuid (>= 0.1-1)
Collate: 'classes.R' 'add_basic_meta.R' 'add_characters.R' 'add_meta.R' 'add_namespaces.R' 'add_trees.R' 'character_classes.R' 'concatenate_nexml.R' 'get_basic_metadata.R' 'get_characters.R' 'get_metadata.R' 'get_namespaces.R' 'get_rdf.R' 'get_taxa.R' 'get_taxa_meta.R' 'get_trees.R' 'internal_get_node_maps.R' 'internal_isEmpty.R' 'internal_name_by_id.R' 'internal_nexml_id.R' 'meta.R' 'nexmlTree.R' 'nexml_add.R' 'nexml_get.R' 'nexml_methods.R' 'nexml_publish.R' 'nexml_read.R' 'nexml_validate.R' 'nexml_write.R' 'simmap.R' 'taxize_nexml.R'
Packaged: 2014-07-17 16:28:19 UTC; cboettig
Author: Carl Boettiger [cre, aut], Scott Chamberlain [aut], Hilmar Lapp [aut], Kseniia Shumelchyk [aut], Rutger Vos [aut]
Maintainer: Carl Boettiger
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-18 00:22:54

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New package rnaseqWrapper with initial version 1.0
Package: rnaseqWrapper
Type: Package
Title: Wrapper for several R packages and scripts to automate RNA-seq analysis
Version: 1.0
Date: 2013-12-06
Author: Mark Peterson
Maintainer: Mark Peterson
Description: This package is designed to streamline several of the common steps for RNA-seq analysis, including differential expression and variant discovery. For the development build, or to contribute changes to this package, please see our repository at https://bitbucket.org/petersmp/rnaseqwrapper/
License: GPL
Depends: ecodist, gplots, gtools
Suggests: topGO,seqinr,DESeq
Packaged: 2014-07-17 13:55:00 UTC; markp
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-18 00:18:31

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Package nsprcomp updated to version 0.5 with previous version 0.4.1 dated 2013-09-22

Title: Non-Negative and Sparse PCA
Description: This package implements two methods for performing a constrained principal component analysis (PCA), where non-negativity and/or sparsity constraints are enforced on the principal axes (PAs). The function 'nsprcomp' computes one principal component (PC) after the other. Each PA is optimized such that the corresponding PC has maximum additional variance not explained by the previous components. In contrast, the function 'nscumcomp' jointly computes all PCs such that the cumulative variance is maximal. Both functions have the same interface as the 'prcomp' function from the 'stats' package (plus some extra parameters), and both return the result of the analysis as an object of class 'nsprcomp', which inherits from 'prcomp'.
Author: Christian Sigg [aut, cre], R Core team [aut]
Maintainer: Christian Sigg

Diff between nsprcomp versions 0.4.1 dated 2013-09-22 and 0.5 dated 2014-07-17

 nsprcomp-0.4.1/nsprcomp/inst/tests             |only
 nsprcomp-0.5/nsprcomp/DESCRIPTION              |   14 -
 nsprcomp-0.5/nsprcomp/MD5                      |   50 ++--
 nsprcomp-0.5/nsprcomp/NAMESPACE                |   10 
 nsprcomp-0.5/nsprcomp/R/asdev.R                |   97 +++++---
 nsprcomp-0.5/nsprcomp/R/cardinality.R          |    6 
 nsprcomp-0.5/nsprcomp/R/nscumcomp.R            |  154 ++++++------
 nsprcomp-0.5/nsprcomp/R/nsprcomp.R             |  196 +++++++++-------
 nsprcomp-0.5/nsprcomp/R/peav.R                 |   53 ++--
 nsprcomp-0.5/nsprcomp/inst/nsprcomp_examples.R |    5 
 nsprcomp-0.5/nsprcomp/man/asdev.Rd             |   82 +++---
 nsprcomp-0.5/nsprcomp/man/cardinality.Rd       |   10 
 nsprcomp-0.5/nsprcomp/man/nscumcomp.Rd         |  255 +++++++++------------
 nsprcomp-0.5/nsprcomp/man/nsprcomp.Rd          |  302 +++++++++++--------------
 nsprcomp-0.5/nsprcomp/man/peav.Rd              |   58 ++--
 nsprcomp-0.5/nsprcomp/tests/run-all.R          |    2 
 nsprcomp-0.5/nsprcomp/tests/testthat           |only
 17 files changed, 665 insertions(+), 629 deletions(-)

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New package nscancor with initial version 0.6
Package: nscancor
Authors@R: c( person("Christian", "Sigg", email = "christian@sigg-iten.ch", role = c("aut", "cre")), person("R Core team", role = "aut"))
Version: 0.6
Date: 2014-02-03
Title: Non-Negative and Sparse CCA
Description: This package implements two algorithms for canonical correlation analysis (CCA) that are based on iterated regression steps. By choosing the appropriate regression algorithm for each data modality, it is possible to enforce sparsity, non-negativity or other kinds of constraints on the projection vectors. Multiple canonical variables are computed sequentially using a generalized deflation scheme, where the additional correlation not explained by previous variables is maximized. 'nscancor' is used to analyze paired data from two domains, and has the same interface as the 'cancor' function from the 'stats' package (plus some extra parameters). 'mcancor' is appropriate for analyzing data from three or more domains.
URL: http://sigg-iten.ch/research/
License: GPL (>= 2)
Suggests: CCA, glmnet, MASS, PMA, testthat (>= 0.8), roxygen2
Packaged: 2014-07-17 18:44:15 UTC; chrsigg
Author: Christian Sigg [aut, cre], R Core team [aut]
Maintainer: Christian Sigg
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-17 23:46:07

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New package itertools2 with initial version 0.1
Package: itertools2
Title: itertools2: Functions creating iterators for efficient looping
Version: 0.1
Date: 2014-07-17
Author: John A. Ramey , Kayla Schaefer
Maintainer: John A. Ramey
Description: A port of Python's excellent itertools module to R for efficient looping.
Depends: R (>= 3.0.2)
Imports: iterators (>= 1.0.7)
Suggests: testthat (>= 0.8.1)
License: MIT + file LICENSE
URL: https://github.com/ramhiser/itertools2, http://ramhiser.com
Packaged: 2014-07-17 21:55:01 UTC; ramhiser
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-18 00:15:26

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Package flora updated to version 0.2.3 with previous version 0.2.2 dated 2014-07-03

Title: tools for interacting with the Brazilian Flora Checklist
Description: Tools to quickly compile taxonomic and distribution data from the Brazilian Flora Checklist. No internet connection needed.
Author: Gustavo Carvalho
Maintainer: Gustavo Carvalho

Diff between flora versions 0.2.2 dated 2014-07-03 and 0.2.3 dated 2014-07-17

 flora-0.2.2/flora/README.md                |only
 flora-0.2.3/flora/DESCRIPTION              |    6 +++---
 flora-0.2.3/flora/MD5                      |   19 +++++++++----------
 flora-0.2.3/flora/NEWS                     |   11 +++++++++--
 flora-0.2.3/flora/R/get.taxa.R             |    7 +++++--
 flora-0.2.3/flora/R/lower.taxa.R           |    8 ++++----
 flora-0.2.3/flora/R/suggest.names.R        |    4 +---
 flora-0.2.3/flora/R/web.flora.R            |    2 +-
 flora-0.2.3/flora/inst/plantminer/server.R |    3 ++-
 flora-0.2.3/flora/inst/plantminer/ui.R     |    5 ++++-
 flora-0.2.3/flora/man/get.taxa.Rd          |    7 ++++++-
 11 files changed, 44 insertions(+), 28 deletions(-)

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Package crrstep updated to version 2014-07.16 with previous version 2014-01.08 dated 2014-01-08

Title: Stepwise covariate selection for the Fine & Gray competing risks regression model
Description: Performs forward and backwards stepwise regression for the Proportional subdistribution hazards model in competing risks (Fine & Gray 1999). Procedure uses AIC, BIC and BICcr as selection criteria. BICcr has a penalty of k = log(n*), where n* is the number of primary events.
Author: Ravi Varadhan & Deborah Kuk
Maintainer: Ravi Varadhan

Diff between crrstep versions 2014-01.08 dated 2014-01-08 and 2014-07.16 dated 2014-07-17

 DESCRIPTION            |    8 ++++----
 MD5                    |    9 +++++----
 NAMESPACE              |    1 +
 R/crrstep.r            |   47 ++++++++++++++++++++++-------------------------
 inst                   |only
 man/crrstep-package.Rd |    4 ++--
 6 files changed, 34 insertions(+), 35 deletions(-)

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New package RTDE with initial version 0.1-0
Package: RTDE
Type: Package
Title: Robust Tail Dependence Estimation
Version: 0.1-0
Date: 2014-07-31
Author: Christophe Dutang [aut, cre], Armelle Guillou [ctb], Yuri Goegebeur [ctb]
Maintainer: Christophe Dutang
Description: Robust tail dependence estimation for bivariate models. This package is based on two papers by the authors:'Robust and bias-corrected estimation of the coefficient of tail dependence' and 'Robust and bias-corrected estimation of extreme failure sets'. This work was supported by a research grant (VKR023480) from VILLUM FONDEN and an international project for scientific cooperation (PICS-6416).
Depends: R (>= 3.0.0), parallel
Suggests: tseries
License: GPL (>= 2)
URL: https://www.rmetrics.org/files/Paris2014/
Packaged: 2014-07-17 14:07:04 UTC; dutangc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-17 18:41:53

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Package SCGLR updated to version 2.0 with previous version 1.2 dated 2014-03-18

Title: Supervised Component Generalized Linear Regression (SCGLR)
Description: SCGLR extends the Fisher Scoring Algorithm so as to combine PLS regression with GLM estimation in the multivariate context.
Author: Mortier F., Trottier C., Cornu G., Bry X.
Maintainer: "G. Cornu"

Diff between SCGLR versions 1.2 dated 2014-03-18 and 2.0 dated 2014-07-17

 DESCRIPTION                   |   11 -
 MD5                           |   78 +++++------
 NAMESPACE                     |    5 
 NEWS                          |only
 R/critConvergence.r           |    5 
 R/customize.r                 |only
 R/data.r                      |    3 
 R/f2x.r                       |   15 --
 R/infoCriterion.r             |   42 +++--
 R/ingUtils.r                  |only
 R/kComponents.r               |   27 ++-
 R/methods.r                   |only
 R/multivariateFormula.r       |   18 +-
 R/multivariateGlm.fit.r       |   11 +
 R/oneComponent.r              |  126 ++++++++---------
 R/package.r                   |    8 -
 R/plot.r                      |  295 +++++++++++++++++++++++++-----------------
 R/print.r                     |    1 
 R/scglr.r                     |   32 +++-
 R/scglrCrossVal.r             |   22 ++-
 R/summary.r                   |   53 ++++---
 R/utils.r                     |   13 -
 build/vignette.rds            |binary
 inst/doc/scglrVignettes.R     |  128 +++++-------------
 inst/doc/scglrVignettes.pdf   |binary
 inst/doc/scglrVignettes.rnw   |  270 +++++++++++++-------------------------
 man/barplot.SCGLR.Rd          |   12 -
 man/critConvergence.Rd        |    7 
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 man/infoCriterion.Rd          |   36 +----
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 man/multivariateFormula.Rd    |   16 +-
 man/multivariateGlm.Rd        |   38 ++---
 man/multivariatePredictGlm.Rd |   18 --
 man/pairs.SCGLR.Rd            |   20 --
 man/plot.SCGLR.Rd             |   55 +------
 man/print.SCGLR.Rd            |    6 
 man/scglr-package.Rd          |   28 +--
 man/scglr.Rd                  |  136 ++++++++-----------
 man/scglrCrossVal.Rd          |   98 +++++--------
 man/summary.SCGLR.Rd          |   30 +---
 vignettes/scglrVignettes.rnw  |  270 +++++++++++++-------------------------
 43 files changed, 891 insertions(+), 1073 deletions(-)

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Package randomForest updated to version 4.6-10 with previous version 4.6-7 dated 2012-10-16

Title: Breiman and Cutler's random forests for classification and regression
Description: Classification and regression based on a forest of trees using random inputs.
Author: Fortran original by Leo Breiman and Adele Cutler, R port by Andy Liaw and Matthew Wiener.
Maintainer: Andy Liaw

Diff between randomForest versions 4.6-7 dated 2012-10-16 and 4.6-10 dated 2014-07-17

 DESCRIPTION              |    9 ++++---
 MD5                      |   30 ++++++++++++-------------
 R/MDSplot.R              |    2 -
 R/predict.randomForest.R |   22 ++++++++++++------
 R/randomForest.default.R |   17 ++++++++------
 R/randomForest.formula.R |   14 +++++++----
 inst/NEWS                |   32 +++++++++++++++++++++-----
 man/randomForest.Rd      |    6 ++++-
 man/rfcv.Rd              |    4 +--
 src/classTree.c          |   36 +++++++++++++++---------------
 src/regTree.c            |   42 ++++++++++++++++++++++++++---------
 src/regrf.c              |    2 -
 src/rf.c                 |    4 +--
 src/rf.h                 |    9 +++++--
 src/rfsub.f              |   42 +++++++++++++++++------------------
 src/rfutils.c            |   56 +++++++++++++++++------------------------------
 16 files changed, 191 insertions(+), 136 deletions(-)

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Package numOSL updated to version 1.5 with previous version 1.4 dated 2014-06-08

Title: Numeric routines for optically stimulated luminescence dating
Description: Package for optimizing regular numeric problems in optically stimulated luminescence dating, such as: equivalent dose calculation; decay curve decomposition and fast-component equivalent dose estimation; statistical age models analysis and radial plot drawing.
Author: Peng Jun
Maintainer: Peng Jun

Diff between numOSL versions 1.4 dated 2014-06-08 and 1.5 dated 2014-07-17

 DESCRIPTION           |    8 ++++----
 MD5                   |   16 ++++++++--------
 NEWS                  |    4 +++-
 R/numOSL.R            |    4 ++--
 THANKS                |    2 +-
 man/numOSL-package.Rd |    4 ++--
 src/calED.f90         |   12 +++++++++---
 src/calED0.f90        |    8 +++++++-
 src/linearfit.f90     |    2 +-
 9 files changed, 37 insertions(+), 23 deletions(-)

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New package R6 with initial version 1.0.1
Package: R6
Title: Classes with reference semantics
Version: 1.0.1
Authors@R: "Winston Chang [aut, cre]"
Description: The R6 package allows the creation of classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance.
Depends: R (>= 3.0)
Suggests: knitr, microbenchmark, testthat
License: MIT + file LICENSE
LazyData: true
VignetteBuilder: knitr
Packaged: 2014-07-17 05:32:08 UTC; winston
Author: "Winston Chang" [aut, cre]
Maintainer: "Winston Chang"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-17 07:40:51

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New package HDPenReg with initial version 0.89.7
Package: HDPenReg
Version: 0.89.7
Date: 2014-07-11
Title: High-Dimensional Penalized Regression.
Authors@R: c(person("Quentin", "Grimonprez", role = c("aut","cre"), email = "quentin.grimonprez@inria.fr"), person("Serge", "Iovleff", role = "ctb"))
Copyright: inria 2013-2014 for HDPenReg. Serge Iovleff is the copyright holder of the c++ library STKpp.
Depends: methods
Imports: Rcpp
Description: This package contains algorithms for lasso and fused-lasso problems. It contains an implementation of the lars algorithm [1], for the lasso and fusion penalization and EM-based algorithms for (logistic) lasso and fused-lasso.
License: GPL (>= 2)
LinkingTo: Rcpp
SystemRequirements: GNU make
Packaged: 2014-07-16 12:04:43 UTC; grimonprez
Author: Quentin Grimonprez [aut, cre], Serge Iovleff [ctb]
Maintainer: Quentin Grimonprez
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-07-17 08:21:35

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Package BoolNet updated to version 2.0 with previous version 1.63 dated 2014-03-31

Title: Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks
Description: Provides methods to reconstruct and generate synchronous, asynchronous, and probabilistic Boolean networks, and to analyze and visualize attractors in Boolean networks
Author: Christoph Müssel, Martin Hopfensitz, Dao Zhou, Hans Kestler
Maintainer: Hans Kestler

Diff between BoolNet versions 1.63 dated 2014-03-31 and 2.0 dated 2014-07-17

 BoolNet-1.63/BoolNet/vignettes/attractor1.pdf              |only
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 BoolNet-2.0/BoolNet/DESCRIPTION                            |   10 
 BoolNet-2.0/BoolNet/MD5                                    |  178 +-
 BoolNet-2.0/BoolNet/NAMESPACE                              |   11 
 BoolNet-2.0/BoolNet/R/attractorsToLaTeX.R                  |   74 -
 BoolNet-2.0/BoolNet/R/chooseNetwork.R                      |   68 
 BoolNet-2.0/BoolNet/R/fixGenes.R                           |    9 
 BoolNet-2.0/BoolNet/R/generateRandomNKNetwork.R            |   49 
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 BoolNet-2.0/BoolNet/R/generateState.R                      |   30 
 BoolNet-2.0/BoolNet/R/generateTimeSeries.R                 |   57 
 BoolNet-2.0/BoolNet/R/getAttractorSequence.R               |   43 
 BoolNet-2.0/BoolNet/R/getAttractors.R                      |  365 ++---
 BoolNet-2.0/BoolNet/R/getBasinOfAttraction.R               |    6 
 BoolNet-2.0/BoolNet/R/getPathToAttractor.R                 |  124 +
 BoolNet-2.0/BoolNet/R/getStateSummary.R                    |   90 -
 BoolNet-2.0/BoolNet/R/getTransitionTable.R                 |   10 
 BoolNet-2.0/BoolNet/R/helpers.R                            |  252 ++-
 BoolNet-2.0/BoolNet/R/loadBioTapestry.R                    |  131 +
 BoolNet-2.0/BoolNet/R/loadNetwork.R                        |  280 ++-
 BoolNet-2.0/BoolNet/R/loadSBML.R                           |   77 -
 BoolNet-2.0/BoolNet/R/markovSimulation.R                   |    2 
 BoolNet-2.0/BoolNet/R/parseBooleanFunction.R               |  407 +++++
 BoolNet-2.0/BoolNet/R/perturbNetwork.R                     |   19 
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 BoolNet-2.0/BoolNet/R/plotStateGraph.R                     |  128 +
 BoolNet-2.0/BoolNet/R/print.AttractorInfo.R                |  129 -
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 BoolNet-2.0/BoolNet/R/saveNetwork.R                        |   17 
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 BoolNet-2.0/BoolNet/R/testNetworkProperties.R              |  251 ++-
 BoolNet-2.0/BoolNet/R/toPajek.R                            |   43 
 BoolNet-2.0/BoolNet/R/toSBML.R                             |  119 +
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 BoolNet-2.0/BoolNet/man/loadNetwork.Rd                     |  120 +
 BoolNet-2.0/BoolNet/man/loadSBML.Rd                        |   10 
 BoolNet-2.0/BoolNet/man/perturbNetwork.Rd                  |   12 
 BoolNet-2.0/BoolNet/man/perturbTrajectories.Rd             |only
 BoolNet-2.0/BoolNet/man/plotAttractors.Rd                  |   14 
 BoolNet-2.0/BoolNet/man/plotNetworkWiring.Rd               |    2 
 BoolNet-2.0/BoolNet/man/plotSequence.Rd                    |   10 
 BoolNet-2.0/BoolNet/man/plotStateGraph.Rd                  |    9 
 BoolNet-2.0/BoolNet/man/print.SymbolicSimulation.Rd        |only
 BoolNet-2.0/BoolNet/man/reconstructNetwork.Rd              |   31 
 BoolNet-2.0/BoolNet/man/saveNetwork.Rd                     |    7 
 BoolNet-2.0/BoolNet/man/sequenceToLaTeX.Rd                 |    7 
 BoolNet-2.0/BoolNet/man/simplifyNetwork.Rd                 |    4 
 BoolNet-2.0/BoolNet/man/simulateSymbolicModel.Rd           |only
 BoolNet-2.0/BoolNet/man/stateTransition.Rd                 |   12 
 BoolNet-2.0/BoolNet/man/symbolicToTruthTable.Rd            |only
 BoolNet-2.0/BoolNet/man/testNetworkProperties.Rd           |   70 
 BoolNet-2.0/BoolNet/man/toPajek.Rd                         |   13 
 BoolNet-2.0/BoolNet/man/toSBML.Rd                          |    9 
 BoolNet-2.0/BoolNet/man/truthTableToSymbolic.Rd            |only
 BoolNet-2.0/BoolNet/src/boolean_network.c                  |    9 
 BoolNet-2.0/BoolNet/src/common.c                           |   19 
 BoolNet-2.0/BoolNet/src/common.h                           |   59 
 BoolNet-2.0/BoolNet/src/probabilistic_boolean_network.c    |    2 
 BoolNet-2.0/BoolNet/src/reconstruct_network.c              |  741 +++++++---
 BoolNet-2.0/BoolNet/src/symbolic_simulator.c               |only
 BoolNet-2.0/BoolNet/vignettes/BoolNet_package_vignette.Snw |  921 +++++++++----
 BoolNet-2.0/BoolNet/vignettes/BoolNet_package_vignette.bib |   11 
 105 files changed, 4822 insertions(+), 2109 deletions(-)

More information about BoolNet at CRAN
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Package mvcwt updated to version 1.3 with previous version 1.2 dated 2013-11-07

Title: Wavelet analysis of multiple time series
Description: This package computes the continuous wavelet transform of irregularly sampled time series.
Author: Timothy H. Keitt
Maintainer: Tim Keitt

Diff between mvcwt versions 1.2 dated 2013-11-07 and 1.3 dated 2014-07-17

 DESCRIPTION          |   15 +-
 MD5                  |   25 ++-
 NAMESPACE            |   18 ++
 R/mvcwt.R            |  326 ++++++++++++++++++++++++++++++++++++++++++++++++---
 man/Morlet.Rd        |   42 ++++--
 man/contour.mvcwt.Rd |   60 +++++----
 man/image.mvcwt.Rd   |   56 +++++---
 man/lrlake.Rd        |   42 ++----
 man/mvcwt-package.Rd |   48 ++++---
 man/mvcwt.Rd         |   62 ++++-----
 man/plot.mvcwt.Rd    |   61 ++++++---
 man/utils.Rd         |only
 man/wmr.Rd           |   55 +++++---
 man/wmr.boot.Rd      |   46 +++++--
 14 files changed, 631 insertions(+), 225 deletions(-)

More information about mvcwt at CRAN
Permanent link