Title: an R interface to figshare.com.
Diff between rfigshare versions 0.3-1 dated 2014-04-29 and 0.3.5 dated 2014-07-18
Description: an R interface to figshare.com.
Author: Carl Boettiger [aut, cre],
Scott Chamberlain [aut],
Karthik Ram [aut],
Edmund Hart [aut]
Maintainer: Carl Boettiger
rfigshare-0.3-1/rfigshare/man/fs_get_auth.Rd |only
rfigshare-0.3.5/rfigshare/DESCRIPTION | 8
rfigshare-0.3.5/rfigshare/MD5 | 75 +--
rfigshare-0.3.5/rfigshare/NAMESPACE | 3
rfigshare-0.3.5/rfigshare/NEWS | 33 +
rfigshare-0.3.5/rfigshare/R/fs_auth.R | 14
rfigshare-0.3.5/rfigshare/R/fs_object_methods.R | 4
rfigshare-0.3.5/rfigshare/build/vignette.rds |binary
rfigshare-0.3.5/rfigshare/inst/doc/README.R | 21 -
rfigshare-0.3.5/rfigshare/inst/doc/README.html | 131 +++---
rfigshare-0.3.5/rfigshare/man/fs_add_author.Rd | 10
rfigshare-0.3.5/rfigshare/man/fs_add_authors.Rd | 17
rfigshare-0.3.5/rfigshare/man/fs_add_categories.Rd | 13
rfigshare-0.3.5/rfigshare/man/fs_add_links.Rd | 14
rfigshare-0.3.5/rfigshare/man/fs_add_tags.Rd | 8
rfigshare-0.3.5/rfigshare/man/fs_auth.Rd | 56 +-
rfigshare-0.3.5/rfigshare/man/fs_author_ids.Rd | 21 -
rfigshare-0.3.5/rfigshare/man/fs_author_search.Rd | 11
rfigshare-0.3.5/rfigshare/man/fs_browse.Rd | 30 -
rfigshare-0.3.5/rfigshare/man/fs_cat_to_id.Rd | 7
rfigshare-0.3.5/rfigshare/man/fs_category_list.Rd | 3
rfigshare-0.3.5/rfigshare/man/fs_create.Rd | 35 -
rfigshare-0.3.5/rfigshare/man/fs_create_author.Rd | 10
rfigshare-0.3.5/rfigshare/man/fs_delete.Rd | 15
rfigshare-0.3.5/rfigshare/man/fs_details.Rd | 16
rfigshare-0.3.5/rfigshare/man/fs_download.Rd | 25 -
rfigshare-0.3.5/rfigshare/man/fs_embed.Rd | 3
rfigshare-0.3.5/rfigshare/man/fs_ids.Rd | 3
rfigshare-0.3.5/rfigshare/man/fs_image_url.Rd | 5
rfigshare-0.3.5/rfigshare/man/fs_make_private.Rd | 8
rfigshare-0.3.5/rfigshare/man/fs_make_public.Rd | 10
rfigshare-0.3.5/rfigshare/man/fs_new_article.Rd | 42 --
rfigshare-0.3.5/rfigshare/man/fs_search.Rd | 48 --
rfigshare-0.3.5/rfigshare/man/fs_update.Rd | 22 -
rfigshare-0.3.5/rfigshare/man/fs_upload.Rd | 15
rfigshare-0.3.5/rfigshare/man/fs_upload_one.Rd | 13
rfigshare-0.3.5/rfigshare/man/plot_to_filename.Rd | 12
rfigshare-0.3.5/rfigshare/man/summary_fs_details.Rd | 3
rfigshare-0.3.5/rfigshare/tests/testthat/test_figshare.R | 308 +++++++--------
39 files changed, 505 insertions(+), 567 deletions(-)
Title: Multivariate and univariate meta-analysis and meta-regression
Diff between mvmeta versions 0.4.3 dated 2014-04-08 and 0.4.4 dated 2014-07-18
Description: The package mvmeta consists of a collection of functions to perform fixed and random-effects multivariate and univariate meta-analysis and meta-regression in R.
Author: Antonio Gasparrini
Maintainer: Antonio Gasparrini
mvmeta-0.4.3/mvmeta/R/mlfull.fn.R |only
mvmeta-0.4.3/mvmeta/R/remlfull.fn.R |only
mvmeta-0.4.4/mvmeta/DESCRIPTION | 8 -
mvmeta-0.4.4/mvmeta/MD5 | 36 +++---
mvmeta-0.4.4/mvmeta/NAMESPACE | 163 +++++++++++++++---------------
mvmeta-0.4.4/mvmeta/R/augment.R |only
mvmeta-0.4.4/mvmeta/R/blup.mvmeta.R | 1
mvmeta-0.4.4/mvmeta/R/mvmeta.R | 1
mvmeta-0.4.4/mvmeta/R/mvmeta.control.R | 6 -
mvmeta-0.4.4/mvmeta/R/mvmeta.fit.R | 9 +
mvmeta-0.4.4/mvmeta/R/qtest.mvmeta.R | 1
mvmeta-0.4.4/mvmeta/inst/ChangeLog | 19 +++
mvmeta-0.4.4/mvmeta/man/augment.Rd |only
mvmeta-0.4.4/mvmeta/man/fibrinogen.Rd | 116 ++++++++++-----------
mvmeta-0.4.4/mvmeta/man/hsls.Rd | 10 -
mvmeta-0.4.4/mvmeta/man/hyp.Rd | 12 +-
mvmeta-0.4.4/mvmeta/man/mvmeta-package.Rd | 2
mvmeta-0.4.4/mvmeta/man/mvmeta.Rd | 2
mvmeta-0.4.4/mvmeta/man/mvmeta.control.Rd | 4
mvmeta-0.4.4/mvmeta/man/p53.Rd | 8 -
mvmeta-0.4.4/mvmeta/man/smoking.Rd | 14 +-
21 files changed, 222 insertions(+), 190 deletions(-)
Title: Statistical Disclosure Control methods for anonymization of
microdata and risk estimation
Diff between sdcMicro versions 4.3.0 dated 2014-03-03 and 4.4.0 dated 2014-07-18
Description: Data from statistical agencies and other institutions are mostly
confidential. This package can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files.
In addition, various risk estimation methods are included.
Note that the package sdcMicroGUI includes a graphical user interface for various methods
in this package.
Author: Matthias Templ, Alexander Kowarik, Bernhard Meindl
Maintainer: Matthias Templ
DESCRIPTION | 8
MD5 | 48 ++---
R/addNoise.r | 231 ++++++++++++++--------------
R/freqCalc.r | 2
R/indivRisk.R | 16 +
R/localSupp.R | 37 ++--
R/printFunctions.R | 2
build/vignette.rds |binary
inst/doc/sdc_guidelines.R | 32 ---
inst/doc/sdc_guidelines.pdf |binary
inst/doc/sdc_guidelines.rnw | 58 ++++---
man/LLmodGlobalRisk.Rd | 159 +++++++++++--------
man/addNoise.Rd | 4
man/indivRisk.Rd | 103 ++++++------
man/measure_risk.Rd | 350 +++++++++++++++++++++++--------------------
man/print.suda2.Rd | 2
man/sdcMicro-package.Rd | 2
man/sdcMicroObj-class.Rd | 2
man/suda2.Rd | 2
src/Mdav.h | 23 ++
src/RankSwapping.h | 9 -
src/Suda2.h | 5
src/freqCalc.h | 1
tests/globalRecoding_test.R | 28 +--
vignettes/sdc_guidelines.rnw | 58 ++++---
25 files changed, 652 insertions(+), 530 deletions(-)
Title: Graphical user interface for data mining in R
Diff between rattle versions 3.0.2 dated 2014-02-06 and 3.1.0 dated 2014-07-18
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data mining.
The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. All of this with knowing little
about R. All R commands are logged and commented through the log tab. Thus they
are available to the user as a script file or as an aide for the user to
learn R or to copy-and-paste directly into R itself.
Rattle also exports a number of utility
functions and the graphical user interface, invoked as rattle(), does
not need to be run to deploy these.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (Original author of print.summary.nnet)
Maintainer: Graham Williams
rattle-3.0.2/rattle/inst/INSTALL |only
rattle-3.0.2/rattle/man/man |only
rattle-3.0.2/rattle/man/plotNetwork.Rd |only
rattle-3.1.0/rattle/DESCRIPTION | 14
rattle-3.1.0/rattle/MD5 | 83 +---
rattle-3.1.0/rattle/NAMESPACE | 89 ++--
rattle-3.1.0/rattle/R/associate.R | 6
rattle-3.1.0/rattle/R/cluster.R | 23 -
rattle-3.1.0/rattle/R/evaluate.R | 259 +++++++++-----
rattle-3.1.0/rattle/R/explore.R | 137 +++----
rattle-3.1.0/rattle/R/export.R | 29 -
rattle-3.1.0/rattle/R/pam.R |only
rattle-3.1.0/rattle/R/random_forest.R | 57 +--
rattle-3.1.0/rattle/R/rattle.R | 101 +----
rattle-3.1.0/rattle/R/riskchart.R | 14
rattle-3.1.0/rattle/R/zzz.R | 14
rattle-3.1.0/rattle/build/vignette.rds |binary
rattle-3.1.0/rattle/data/locationsAUS.RData |binary
rattle-3.1.0/rattle/data/weather.RData |binary
rattle-3.1.0/rattle/data/weatherAUS.RData |binary
rattle-3.1.0/rattle/inst/ChangeLog | 501 ++++++++++++++--------------
rattle-3.1.0/rattle/inst/arff/weather.arff | 2
rattle-3.1.0/rattle/inst/doc/rattle.Rnw | 1
rattle-3.1.0/rattle/inst/doc/rattle.pdf |binary
rattle-3.1.0/rattle/man/internal.Rd | 1
rattle-3.1.0/rattle/vignettes/rattle.Rnw | 1
26 files changed, 665 insertions(+), 667 deletions(-)
Title: Connect MonetDB to R
Diff between MonetDB.R versions 0.9.2 dated 2014-04-22 and 0.9.4 dated 2014-07-18
Description: Allows to pull data from MonetDB into R
Author: Hannes Muehleisen [aut, cre],
Thomas Lumley [ctb],
Anthony Damico [ctb]
Maintainer: Hannes Muehleisen
DESCRIPTION | 8 +++----
MD5 | 8 +++----
NEWS | 9 +++++++-
R/control.R | 7 ++++--
R/monetdb.R | 64 ++++++++++++++++++++++++++++++++++++------------------------
5 files changed, 60 insertions(+), 36 deletions(-)
Title: Moving Epidemic Method R Package.
Diff between mem versions 1.3 dated 2013-06-25 and 1.4 dated 2014-07-18
Description: Modelization of influenza epidemics in order to monitor future activity.
Author: Jose E. Lozano Alonso
Maintainer: Jose E. Lozano Alonso
DESCRIPTION | 15 +++++++--------
MD5 | 20 ++++++++++----------
NAMESPACE | 2 ++
R/influenza.R | 2 ++
data/flucyl.rda |binary
man/epimem.Rd | 15 +++++++--------
man/epitiming.Rd | 2 --
man/flucyl.Rd | 1 -
man/mem-package.Rd | 9 ++++-----
man/memintensity.Rd | 6 ++----
man/memtrend.Rd | 6 ++----
11 files changed, 36 insertions(+), 42 deletions(-)
Title: Multiple testing methods for exploratory research
Diff between cherry versions 0.4-9 dated 2014-04-27 and 0.5-10 dated 2014-07-18
Description: This package implements a class of multiple testing
methods that does not prescribe the user what hypotheses to
reject, but instead allows the user to select the set of
selected hypotheses freely. The multiple testing procedure aids
this selection by providing an upper confidence bound for the
number of false rejections among the selected set. Because the
confidence bounds are simultaneous for all possible rejected
sets, the validity is not compromised by post hoc selection. Some
of the functions in this package are optionally enhanced by the gurobi
software and its accompanying R package. For installation of gurobi, follow the instructions at
http://pages.gurobi.com/DownloadRegistration.html?/download/gurobi-optimizer and
http://www.gurobi.com/documentation/5.6/quick-start-guide/r_installing_the_r_package.
Author: Jelle Goeman, Aldo Solari, Rosa Meijer
Maintainer: Jelle Goeman
ChangeLog | 3 +
DESCRIPTION | 21 +++++----
MD5 | 25 +++++++----
NAMESPACE | 10 +++-
R/DAGmethod.R |only
R/DAGstructure.R |only
R/regionmethod.R | 10 ++--
inst/doc/cherry.R | 74 +++++++++++++++++++++++++++++++++
inst/doc/cherry.Rnw | 2
inst/doc/cherry.pdf |binary
man/DAG-class.Rd |only
man/DAGmethod.Rd |only
man/DAGpick.Rd |only
man/DAGstructure-class.Rd |only
man/construct.Rd |only
man/shortcuts.Rd | 4 +
vignettes/cherry.Rnw | 102 +++++++++++++++++++++++++++++++++++++++++++++-
17 files changed, 223 insertions(+), 28 deletions(-)
Title: Stereo Camera Calibration and Reconstruction
Diff between StereoMorph versions 1.0 dated 2014-04-15 and 1.1 dated 2014-07-18
Description: StereoMorph provides functions for the collection of 3D points and curves using a stereo camera setup.
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++++++++-----
NAMESPACE | 5 +++++
R/digitizeImage.R |only
R/readBezierControlPoints.R | 2 +-
R/unifyLandmarks.R | 6 +++---
inst/extdata/apps |only
man/digitizeImage.Rd |only
man/unifyLandmarks.Rd | 7 ++++---
9 files changed, 34 insertions(+), 16 deletions(-)
Title: Single-Index Response Surface Models
Diff between siRSM versions 1.0 dated 2014-06-16 and 1.1 dated 2014-07-18
Description: This package fits single-index (quadratic) response surface models.
Author: Huan Cheng, Mu Zhu
Maintainer: Mu Zhu
siRSM-1.0/siRSM/R/generate.simulation.R |only
siRSM-1.0/siRSM/man/generate.simulation.Rd |only
siRSM-1.1/siRSM/DESCRIPTION | 8 +--
siRSM-1.1/siRSM/MD5 | 20 ++++----
siRSM-1.1/siRSM/R/siRSM-inference.R | 30 +++++++-----
siRSM-1.1/siRSM/R/siRSM-plotting.R | 32 ++++++-------
siRSM-1.1/siRSM/data |only
siRSM-1.1/siRSM/man/EdwardsMBA.Rd |only
siRSM-1.1/siRSM/man/ci.index.Rd | 4 -
siRSM-1.1/siRSM/man/draw.interaction.only.Rd | 4 -
siRSM-1.1/siRSM/man/siRSM-package.Rd | 63 ++++++++++++++-------------
siRSM-1.1/siRSM/man/siRSM.Rd | 2
siRSM-1.1/siRSM/man/surface.stats.Rd | 2
13 files changed, 85 insertions(+), 80 deletions(-)
Title: A toolset for working with lists
Diff between rlist versions 0.2.2 dated 2014-07-11 and 0.2.3 dated 2014-07-18
Description: A toolset for working with lists as dataset,
including filtering, mapping, grouping, sorting, updating, and
many other functions, which allow functional programming
style applied in list operations.
Author: Kun Ren
Maintainer: Kun Ren
DESCRIPTION | 8 ++--
MD5 | 46 ++++++++++++------------
NAMESPACE | 2 +
NEWS | 8 ++++
R/functions.R | 42 ++++++----------------
R/internal.R | 83 +++++++++++++++++++++-----------------------
R/list.all.R | 2 -
R/list.any.R | 2 -
R/list.count.R | 2 -
R/list.exclude.R | 2 -
R/list.filter.R | 2 -
R/list.flatten.R |only
R/list.if.R | 3 +
R/list.load.R | 2 -
R/list.parse.R | 2 -
R/list.save.R | 2 -
R/list.serialize.R | 2 -
R/list.skipWhile.R | 23 ++----------
R/list.takeWhile.R | 23 ++----------
R/list.unserialize.R | 2 -
R/list.which.R | 2 -
inst/doc/Examples.R | 17 +++++++++
inst/doc/Examples.html | 38 ++++++++++++++++++++
man/list.flatten.Rd |only
tests/testthat/test-basic.R | 6 +++
25 files changed, 173 insertions(+), 148 deletions(-)
Title: Bezier Curve and Spline Toolkit
Diff between bezier versions 1.0 dated 2014-03-26 and 1.1 dated 2014-07-18
Description: The bezier package is a toolkit for working with Bezier curves and splines. The package provides functions for point generation, arc length estimation, degree elevation and curve fitting.
Author: Aaron Olsen
Maintainer: Aaron Olsen
DESCRIPTION | 6 +--
MD5 | 14 ++++----
R/bezierCurveFit.R | 6 +--
R/pointsOnBezier.R | 68 +++++++++++++++++++++++++++++++++++++++-
man/bezier.Rd | 2 -
man/bezierCurveFit.Rd | 6 +--
man/elevateBezierDegree.Rd | 4 +-
man/pointsOnBezier.Rd | 75 +++++++++++++++++++++++++++++++++------------
8 files changed, 140 insertions(+), 41 deletions(-)