Title: An R interface to the web API of Statistics Sweden
Diff between sweSCB versions 0.3.4 dated 2014-04-15 and 0.3.5 dated 2014-07-22
Description: Interface for the REST API of Statistics Sweden. The
package offers methods to fetch information about the data hierarchy stored
behind the API; extract metadata; fetch actual data; and clean up the
results.
Author: Love Hansson, Thomas Reinholdsson, Mans Magnusson
Maintainer: Mans Magnusson
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/getData.R | 4 ++--
README.md | 10 +++++-----
4 files changed, 14 insertions(+), 14 deletions(-)
Title: Spartan (Simulation Parameter Analysis R Toolkit ApplicatioN)
Diff between spartan versions 1.3 dated 2014-03-19 and 2.0 dated 2014-07-22
Description: Computer simulations are becoming a popular technique to use in attempts to further our understanding of complex systems. SPARTAN, described in our 2013 publication in PLoS Computational Biology, provides code for four techniques described in available literature which aid the analysis of simulation results, at both single and multiple timepoints in the simulation run. The first technique addresses aleatory uncertainty in the system caused through inherent stochasticity, and determines the number of replicate runs necessary to generate a representative result. The second examines how robust a simulation is to parameter perturbation, through the use of a one-at-a-time parameter analysis technique. Thirdly, a latin hypercube based sensitivity analysis technique is included which can elucidate non-linear effects between parameters and indicate implications of epistemic uncertainty with reference to the system being modelled. Finally, a further sensitivity analysis technique, the extended Fourier Amplitude Sampling Test (eFAST) has been included to partition the variance in simulation results between input parameters, to determine the parameters which have a significant effect on simulation behaviour. Version 1.3 adds support for Netlogo simulations, aiding simulation developers who use Netlogo to build their simulations perform the same analyses. We have also added user support through the group spartan-group[AT]york[DOT]ac[DOT]uk.Version 2.0 added the ability to read all simulations in from a single CSV file in addition to the prescribed folder structure in previous versions.
Author: Kieran Alden, Mark Read, Paul Andrews, Jon Timmis, Henrique Veiga-Fernandes, Mark Coles
Maintainer: Kieran Alden
spartan |only
1 file changed
Title: Sure Independence Screening
Diff between SIS versions 0.7-2 dated 2014-05-06 and 0.7-3 dated 2014-07-22
Description: (Iterative) Sure Independence Screening for Generalized Linear Models and Cox's Proportional Hazards Models
Author: Jianqing Fan, Yang Feng, Diego Franco Saldana, Richard Samworth, Yichao Wu
Maintainer: Diego Franco Saldana
DESCRIPTION | 8 ++++----
MD5 | 11 ++++++++++-
data |only
man/leukemia.test.Rd |only
man/leukemia.train.Rd |only
man/prostate.test.Rd |only
man/prostate.train.Rd |only
7 files changed, 14 insertions(+), 5 deletions(-)
Title: Identification of dichotomous differential item functioning
(DIF) using Angoff's Delta Plot method
Diff between deltaPlotR versions 1.3 dated 2013-07-22 and 1.4 dated 2014-07-22
Description: The deltaPlotR package proposes an implementation of Angoff's Delta Plot method to detect dichotomous DIF. Several detection thresholds are included, either from multivariate normality assumption or by prior determination. Item purification is supported.
Author: David Magis (U Liege), Bruno Facon (Univ Lille-Nord de France)
Maintainer: David Magis
DESCRIPTION | 8 ++++----
MD5 | 18 +++++++++---------
NEWS | 22 ++++++++++++++++++++++
R/deltaPlot.R | 12 +++++++-----
R/diagPlot.R | 6 +++---
inst/CITATION | 26 +++++++++++++++++---------
man/adjustExtreme.Rd | 4 ++++
man/deltaPlot.Rd | 4 +++-
man/deltaPlotR-package.Rd | 4 ++--
man/diagPlot.Rd | 4 +++-
10 files changed, 74 insertions(+), 34 deletions(-)
Title: A Program to Estimate Animal Abundance and Density using
Bayesian Spatially-Explicit Capture-Recapture Models
Diff between SPACECAP versions 1.0.6 dated 2012-06-14 and 1.1.0 dated 2014-07-22
Description: SPACECAP is a user-friendly software package for
estimating animal densities using closed model
capture-recapture sampling based on photographic captures using
Bayesian spatially-explicit capture-recapture models. This
approach offers advantage such as: substantially dealing with
problems posed by individual heterogeneity in capture
probabilities in conventional capture-recapture analyses. It
also offers non-asymptotic inferences which are more
appropriate for small samples of capture data typical of
photo-capture studies.
Author: Arjun M. Gopalaswamy, Andrew J. Royle, Michael E. Meredith, Pallavi
Singh, Devcharan Jathanna, N. Samba Kumar and K. Ullas Karanth
Maintainer: Arjun M. Gopalaswamy
SPACECAP-1.0.6/SPACECAP/R/SPACECAP106.R |only
SPACECAP-1.0.6/SPACECAP/data |only
SPACECAP-1.0.6/SPACECAP/man/LOCIDSO.Rd |only
SPACECAP-1.0.6/SPACECAP/man/LOCSO.Rd |only
SPACECAP-1.0.6/SPACECAP/man/SPACECAP-package.Rd |only
SPACECAP-1.0.6/SPACECAP/man/tigerhab.Rd |only
SPACECAP-1.1.0/SPACECAP/DESCRIPTION | 15
SPACECAP-1.1.0/SPACECAP/MD5 | 30 -
SPACECAP-1.1.0/SPACECAP/NAMESPACE | 16
SPACECAP-1.1.0/SPACECAP/NEWS |only
SPACECAP-1.1.0/SPACECAP/R/SPACECAP.R |only
SPACECAP-1.1.0/SPACECAP/R/e2dist.R |only
SPACECAP-1.1.0/SPACECAP/R/hdi.R |only
SPACECAP-1.1.0/SPACECAP/R/plotDetFunc.R |only
SPACECAP-1.1.0/SPACECAP/inst/CITATION | 4
SPACECAP-1.1.0/SPACECAP/inst/doc |only
SPACECAP-1.1.0/SPACECAP/inst/extdata |only
SPACECAP-1.1.0/SPACECAP/man/Example_files.Rd |only
SPACECAP-1.1.0/SPACECAP/man/ModelAndPriors.Rd |only
SPACECAP-1.1.0/SPACECAP/man/SPACECAP-Package.Rd |only
SPACECAP-1.1.0/SPACECAP/man/SPACECAP.Rd | 551 ++++++++----------------
SPACECAP-1.1.0/SPACECAP/man/figures |only
22 files changed, 224 insertions(+), 392 deletions(-)
Title: R and C++11
Diff between Rcpp11 versions 3.1.0.1 dated 2014-04-16 and 3.1.1 dated 2014-07-22
Description: Rcpp11 includes a header only C++11 library that facilitates
integration between R and modern C++.
Author: Romain Francois [aut, cre],
Kevin Ushey [aut],
John Chambers [ctb]
Maintainer: Romain Francois
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/api/meat/as.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/as.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/attributes |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/internal/Exporter.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/internal/const_Proxy_Iterator.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/internal/converter.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/internal/export.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/macros/interface.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/proxy/NodeProxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/proxy/RObjectMethods.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/cauchy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/dpq |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/exp.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/gamma.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/lnorm.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/logis.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/norm.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/unif.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/stats/weibull.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/Range.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/block |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/DelayedCall.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/is_finite.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/is_infinite.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/is_na.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/is_nan.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/mapply |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/pmin.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/sd.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/functions/strings |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/Comparator.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/Comparator_With_One_Value.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/divides.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/minus.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/not.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/plus.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/r_binary_op.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/times.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/operators/unary_minus.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/sugar_forward.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/sugar/tools |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/traits/comparator_type.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/traits/init_type.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/traits/remove_const_and_reference.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/MatrixBase.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/VectorBase.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/VectorOffset.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/concat.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/concat_free.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/const_generic_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/const_string_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/create.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/generic_const_name_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/generic_name_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/name_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/simple_const_name_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/simple_name_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/string_const_name_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/string_name_proxy.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/vector/swap.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/wrap/primitive_range_wrap.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/wrap/primitive_wrap.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/wrap/range_wrap.h |only
Rcpp11-3.1.0.1/Rcpp11/inst/include/Rcpp/wrap/rowmajor.h |only
Rcpp11-3.1.1/Rcpp11/DESCRIPTION | 10
Rcpp11-3.1.1/Rcpp11/MD5 | 443 ++++------
Rcpp11-3.1.1/Rcpp11/README.md | 4
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp.h | 161 +--
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Array.h | 43
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Context.h | 94 +-
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/DataFrame.h | 248 +++--
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Demangler.h | 74 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Dots.h | 18
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/DottedPairImpl.h | 46 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Environment.h | 222 +----
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Formula.h | 61 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Function.h | 44
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Index.h | 14
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/InputParameter.h | 80 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Language.h | 91 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/ListOf.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/NA_Proxy.h | 42
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Named.h | 9
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/NamedDots.h | 30
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Node.h | 84 +
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Pairlist.h | 21
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Promise.h | 27
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/R.h | 10
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/RObject.h | 20
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Reference.h | 68 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/S4.h | 77 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/StretchyList.h | 42
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/String.h | 274 ++----
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Symbol.h | 71 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Timer.h | 10
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/Vector.h | 22
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/WeakReference.h | 30
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/XPtr.h | 57 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/api/meat/NamesProxy.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/api/meat/is.h | 6
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/api/meat/meat.h | 3
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/api/meat/sugar.h | 57 +
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/api/meat/wrap.h | 93 +-
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/as |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/complex.h | 70 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/exceptions.h | 240 +----
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/grow.h | 12
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/Proxy_Iterator.h | 41
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/caster.h | 17
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/coerce/coerce_to_string.h | 2
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/coerce/r_coerce.h | 212 ++--
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/coerce/true_cast.h | 16
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/interrupt.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/na.h | 10
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/r_coerce.h | 122 +-
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/internal/r_vector.h | 4
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/is.h | 6
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/macros/RCPP_API_IMPL.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/macros/RCPP_CHECK_BOUNDS.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/macros/debug.h | 10
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/macros/macros.h | 34
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/protection/Shield.h | 14
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/AttributeProxy.h | 131 +-
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/AttributesProxy.h | 33
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/Binding.h | 47 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/DottedPairMultipleNamedProxyPolicy.h | 12
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/DottedPairProxy.h | 34
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/FieldProxy.h | 49 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/GenericProxy.h | 13
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/NameProxy.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/NamesProxy.h | 49 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/ProtectedProxy.h | 84 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/SlotProxy.h | 79 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/TagProxy.h | 93 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/proxy/proxy.h | 5
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/r_cast.h | 9
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/stats/dpq.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/stats/stats.h | 31
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/storage/NoProtectStorage.h | 25
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/storage/PreserveStorage.h | 82 +
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/structure.h | 2
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functional |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/FunctionWithConversion.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/clamp.h | 80 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/complex.h | 81 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/cumsum.h | 70 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/diff.h | 176 +--
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/duplicated.h | 19
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/enumerate.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/filter.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/functions.h | 31
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/head.h | 46 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/ifelse.h | 394 --------
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/import.h | 105 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/is.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/lapply.h | 38
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/mapply.h | 289 ++++++
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/match.h | 36
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/materialize.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/math.h | 52 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/max.h | 84 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/mean.h | 131 ++
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/min.h | 79 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/na_omit.h | 59 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/parallel.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/pmax.h | 206 ----
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/pow.h | 76 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/range.h | 94 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/reduce.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/rep.h | 126 +-
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/rep_each.h | 99 +-
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/rep_len.h | 147 ++-
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/replicate.h | 76 +
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/rev.h | 40
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/sapply.h | 267 +++---
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/seq_along.h | 64 +
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/setdiff.h | 247 ++---
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/sign.h | 63 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/sum.h | 152 +--
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/table.h | 102 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/tail.h | 46 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/transform.h | 112 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/unique.h | 30
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/var.h | 34
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/which_max.h | 99 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/functions/which_min.h | 99 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/iterators |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/lazy |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/matrix/col.h | 14
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/matrix/diag.h | 65 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/matrix/lower_tri.h | 21
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/matrix/outer.h | 37
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/matrix/row.h | 14
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/matrix/upper_tri.h | 18
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/nona/nona.h | 90 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/operators/arith_Primitive_Vector.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/operators/arith_Vector_Primitive.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/operators/arith_Vector_Vector.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/operators/logical_operators__Vector__Vector.h | 152 ---
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/operators/logical_operators__Vector__primitive.h | 321 +------
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/operators/operators.h | 15
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/operators/unary_Vector.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/sugar.h | 6
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/sugar/undoRmath.h | 3
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/all_compatible.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/all_convertible.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/get_compatible_r_vector_type.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/get_na.h | 52 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/index_sequence_that.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/is_compatible.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/is_finite.h | 2
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/is_lazy_vector.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/is_mapply_compatible.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/is_na.h | 2
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/is_primitive.h | 20
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/is_vector_expression.h | 4
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/mapply_scalar_type.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/named_object.h | 8
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/number_to_type.h | 2
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/r_sexptype_traits.h | 6
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/r_type_traits.h | 54 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/same_mapply_scalar_type.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/storage_type.h | 2
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/traits.h | 13
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/traits/vector_of.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/utils/describe.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/utils/parallel |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/00_forward.h | 12
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/LazyVector.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/Matrix.h | 61 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/MatrixColumn.h | 24
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/MatrixRow.h | 35
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/StrideIterator.h | 18
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/Subsetter.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/SugarMatrixExpression.h | 16
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/SugarVectorExpression.h | 21
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/VectorOfRTYPE.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/converter.h | 46 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/generic_proxy.h | 69 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/impl/CharacterVector.h | 118 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/impl/ExpressionVector.h | 118 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/impl/List.h | 113 --
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/impl/LogicalVector.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/impl/RCPP_VECTOR_API.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/impl/RCPP_VECTOR_PROXY_BASED_API.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/impl/SimpleVector.h | 137 +--
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/is_materialized.h | 8
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/make_subsetter_proxy.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/vector/string_proxy.h | 176 +--
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/ContainerWrapper.h | 5
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/EnumWrapper.h | 4
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/LazyVectorWrapper.h |only
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/MatrixWrapper.h | 68 -
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/PrimitiveWrapper.h | 5
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/SexpConvertibleWrapper.h | 2
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/Wrapper.h | 3
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/forward.h | 11
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/make_charsexp.h | 14
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/wrap.h | 5
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/wrap_impl.h | 13
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp/wrap/wrap_type.h | 84 +
Rcpp11-3.1.1/Rcpp11/inst/include/Rcpp11 |only
262 files changed, 4387 insertions(+), 5963 deletions(-)
Title: Pedigree functions
Diff between kinship2 versions 1.5.7 dated 2014-03-20 and 1.6.0 dated 2014-07-22
Description: Routines to handle family data with a pedigree object. The
initial purpose was to create correlation structures that describe
family relationships such as kinship and identity-by-descent, which
can be used to model family data in mixed effects models, such as in the
coxme function. Also includes a tool for pedigree drawing which is
focused on producing compact layouts without intervention. Recent additions
include utilities to trim the pedigree object with various criteria, and
kinship for the X chromosome
Author: Terry Therneau, Elizabeth Atkinson, Jason Sinnwell, Daniel Schaid, Shannon McDonnell
Maintainer: Jason Sinnwell
DESCRIPTION | 8 ++++----
MD5 | 22 ++++++++++++----------
NAMESPACE | 3 ++-
R/align.pedigree.R | 8 ++++++--
R/ped2df.R | 3 ---
R/pedigree.R | 1 +
inst/NEWS.Rd | 13 +++++++++++++
man/familycheck.Rd | 51 ++++++++++++++++++---------------------------------
noweb/align.Rnw | 8 ++++++--
noweb/all.nw | 23 +++++++++++++++++------
noweb/pedigree.Rnw | 15 +++++++++++----
tests/ped1.pdf |only
tests/ped2.pdf |only
13 files changed, 90 insertions(+), 65 deletions(-)
Title: Fit statistic for binary dependent variable models
Diff between heatmapFit versions 1.0 dated 2012-11-20 and 2.0 dated 2014-07-22
Description: Generates a fit plot for diagnosing misspecification in models of
binary dependent variables, and calculates the related heatmap fit
statistic (Esarey and Pierce, 2012).
Author: Justin Esarey [aut, cre],
Andrew Pierce [aut],
Jericho Du [aut]
Maintainer: Justin Esarey
heatmapFit-1.0/heatmapFit/R/Package.R |only
heatmapFit-1.0/heatmapFit/man/documentation.Rd |only
heatmapFit-1.0/heatmapFit/tests |only
heatmapFit-2.0/heatmapFit/DESCRIPTION | 32 +++++++++++-----------
heatmapFit-2.0/heatmapFit/MD5 | 13 +++++---
heatmapFit-2.0/heatmapFit/NAMESPACE | 5 ++-
heatmapFit-2.0/heatmapFit/R/heatmap.compress.R |only
heatmapFit-2.0/heatmapFit/R/heatmap.fit.R |only
heatmapFit-2.0/heatmapFit/R/heatmapFit-package.r |only
heatmapFit-2.0/heatmapFit/man/heatmap.compress.Rd |only
heatmapFit-2.0/heatmapFit/man/heatmap.fit.Rd |only
heatmapFit-2.0/heatmapFit/man/heatmapFit.Rd |only
12 files changed, 28 insertions(+), 22 deletions(-)
Title: Clinical Trial Design and Data Analysis Functions
Diff between clinfun versions 1.0.5 dated 2013-04-16 and 1.0.6 dated 2014-07-22
Description: Utilities to make your clinical collaborations easier if not fun.
Author: Venkatraman E. Seshan
Maintainer: Venkatraman E. Seshan
CHANGES | 6 ++++++
DESCRIPTION | 9 ++++-----
MD5 | 8 ++++----
R/jonkheere.R | 6 +++---
man/gsdesign-internal.Rd | 13 ++++++++-----
5 files changed, 25 insertions(+), 17 deletions(-)
Title: Leveraging Learning to Automatically Manage Algorithms
Diff between llama versions 0.6 dated 2014-04-29 and 0.7 dated 2014-07-22
Description: Provides functionality to train and evaluate algorithm selection models for portfolios.
Author: Lars Kotthoff [aut,cre],
Bernd Bischl [aut],
Barry Hurley [ctb],
Talal Rahwan [ctb]
Maintainer: Lars Kotthoff
llama-0.6/llama/inst/tests |only
llama-0.7/llama/DESCRIPTION | 17 ++---
llama-0.7/llama/MD5 | 73 +++++++++++-----------
llama-0.7/llama/NAMESPACE | 2
llama-0.7/llama/NEWS |only
llama-0.7/llama/R/classify.R | 70 ++++++++++++++-------
llama-0.7/llama/R/classifyPairs.R | 72 ++++++++++++++-------
llama-0.7/llama/R/cluster.R | 48 +++++++-------
llama-0.7/llama/R/imputeCensored.R | 12 ++-
llama-0.7/llama/R/regression.R | 54 ++++++++++------
llama-0.7/llama/R/regressionPairs.R |only
llama-0.7/llama/inst/manual/llama.pdf |binary
llama-0.7/llama/man/classify.Rd | 35 ++++++----
llama-0.7/llama/man/classifyPairs.Rd | 29 +++++---
llama-0.7/llama/man/cluster.Rd | 44 ++++++-------
llama-0.7/llama/man/imputeCensored.Rd | 8 --
llama-0.7/llama/man/llama-package.Rd | 38 +++--------
llama-0.7/llama/man/misclassificationPenalties.Rd | 8 --
llama-0.7/llama/man/normalize.Rd | 6 -
llama-0.7/llama/man/parscores.Rd | 12 +--
llama-0.7/llama/man/regression.Rd | 42 ++++++------
llama-0.7/llama/man/regressionPairs.Rd |only
llama-0.7/llama/man/successes.Rd | 8 --
llama-0.7/llama/tests/run-all.R | 3
llama-0.7/llama/tests/testthat |only
25 files changed, 322 insertions(+), 259 deletions(-)
Title: Bayesian analysis for exponential random graph models
Diff between Bergm versions 2.8 dated 2014-07-02 and 2.9 dated 2014-07-22
Description: Set of tools to analyse Bayesian exponential random graph models
Author: Alberto Caimo and Nial Friel
Maintainer: Alberto Caimo
DESCRIPTION | 10 +++++-----
MD5 | 23 ++++++++++++++---------
R/abergm.R | 22 ++++++++--------------
R/bbeta.R |only
R/bbeta.output.R |only
R/bergm.R | 2 +-
R/bergm.output.R | 8 +++++++-
R/bergmS.output.R | 11 +++++++++--
inst |only
man/Bergm-package.Rd | 7 +++----
man/abergm.Rd | 12 ++++++------
man/bbeta.Rd |only
man/bbeta.output.Rd |only
man/bergm.Rd | 10 +++-------
man/bergmS.Rd | 11 +++++------
15 files changed, 61 insertions(+), 55 deletions(-)
Title: Adaptive Semiparametric Regression with Simultaneous Confidence
Bands
Diff between AdaptFitOS versions 0.50 dated 2014-03-19 and 0.54 dated 2014-07-22
Description: Based on the function "asp" of the AdaptFit package fits semiparametric regression models with spatially adaptive penalized splines and computes simultaneous confidence bands.
Author: Manuel Wiesenfarth and Tatyana Krivobokova
Maintainer: Manuel Wiesenfarth
DESCRIPTION | 10
MD5 | 62 ++--
R/almeAux.R | 126 ++++-----
R/arg.searchOS.r | 117 ++++----
R/asp-internal.r | 6
R/asp2.r | 2
R/aspHetero.r | 25 -
R/aspOS.r | 4
R/aspmFormReadOS.r | 5
R/firstlib.r | 2
R/fitted.asp.r | 14 -
R/plot.scbTest.r | 4
R/plot.scbm.r | 3
R/predict.asp.r | 591 ++++++++++++++++++++++---------------------
R/print.asp.r | 55 +---
R/residuals.asp.r | 32 --
R/scbM.r | 15 -
R/scbTest.r | 17 -
R/spmArgReadOS.r | 47 +--
R/spmDesignOS.r | 625 ++++++++++++++++++++++------------------------
R/spmOS.r | 5
R/summary.asp.r | 582 +++++++++++++++++++++---------------------
man/AdaptFitOS-package.Rd | 32 +-
man/asp2.Rd | 39 +-
man/aspHetero.Rd | 11
man/fitted.asp.Rd | 15 -
man/plot.asp.Rd | 21 -
man/predict.asp.Rd | 5
man/residuals.asp.Rd | 16 -
man/scbM.Rd | 24 +
man/sigma.Rd | 2
man/summary.asp.Rd | 7
32 files changed, 1216 insertions(+), 1305 deletions(-)
Title: Interface to PLoS Journals search API.
Diff between rplos versions 0.4.0 dated 2014-05-13 and 0.4.1 dated 2014-07-22
Description: A programmatic interface to the
Web Service methods provided by the Public Library
of Science journals for search.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain
rplos-0.4.0/rplos/tests/test-all.R |only
rplos-0.4.1/rplos/DESCRIPTION | 9 +-
rplos-0.4.1/rplos/MD5 | 66 +++++++++----------
rplos-0.4.1/rplos/NAMESPACE | 2
rplos-0.4.1/rplos/NEWS | 7 ++
rplos-0.4.1/rplos/R/fulltext.R | 2
rplos-0.4.1/rplos/README.md | 32 ++++-----
rplos-0.4.1/rplos/build/vignette.rds |binary
rplos-0.4.1/rplos/inst/schema.xml |only
rplos-0.4.1/rplos/man/addmissing.Rd | 2
rplos-0.4.1/rplos/man/check_response.Rd | 2
rplos-0.4.1/rplos/man/concat_todf.Rd | 2
rplos-0.4.1/rplos/man/crossref.Rd | 2
rplos-0.4.1/rplos/man/facetplos.Rd | 2
rplos-0.4.1/rplos/man/formatarticleurl.Rd | 2
rplos-0.4.1/rplos/man/formatcrossref.Rd | 2
rplos-0.4.1/rplos/man/full_text_urls.Rd | 2
rplos-0.4.1/rplos/man/highbrow.Rd | 2
rplos-0.4.1/rplos/man/highplos.Rd | 2
rplos-0.4.1/rplos/man/insertnones.Rd | 2
rplos-0.4.1/rplos/man/journalnamekey.Rd | 2
rplos-0.4.1/rplos/man/plos_fulltext.Rd | 4 -
rplos-0.4.1/rplos/man/plosabstract.Rd | 2
rplos-0.4.1/rplos/man/plosauthor.Rd | 2
rplos-0.4.1/rplos/man/plosfields.Rd | 2
rplos-0.4.1/rplos/man/plosfigtabcaps.Rd | 2
rplos-0.4.1/rplos/man/plossubject.Rd | 2
rplos-0.4.1/rplos/man/plostitle.Rd | 2
rplos-0.4.1/rplos/man/plosviews.Rd | 2
rplos-0.4.1/rplos/man/plosword.Rd | 2
rplos-0.4.1/rplos/man/plot_throughtime.Rd | 2
rplos-0.4.1/rplos/man/rplos.Rd | 2
rplos-0.4.1/rplos/man/searchplos.Rd | 2
rplos-0.4.1/rplos/tests/testthat/test-plosabstract.R | 12 +--
rplos-0.4.1/rplos/tests/testthat/test-plosauthor.R | 6 -
35 files changed, 94 insertions(+), 92 deletions(-)
Title: A Fixed Memeory Moving Expanding Window Average
Diff between mewAvg versions 0.2.0 dated 2014-01-24 and 0.3.0 dated 2014-07-22
Description: Computes the average of a sequence of random vectors
in a moving expanding window using a fixed amount of storage
Author: Adam L. Pintar and Zachary H. Levine
Maintainer: Adam L. Pintar
mewAvg-0.2.0/mewAvg/R/RmewAvg.R |only
mewAvg-0.2.0/mewAvg/src/Makevars |only
mewAvg-0.2.0/mewAvg/src/RmewAvg.c |only
mewAvg-0.2.0/mewAvg/src/mewAvgForRpkg.c |only
mewAvg-0.2.0/mewAvg/src/mewAvgForRpkg.h |only
mewAvg-0.3.0/mewAvg/DESCRIPTION | 9
mewAvg-0.3.0/mewAvg/MD5 | 32 ++-
mewAvg-0.3.0/mewAvg/NAMESPACE | 12 +
mewAvg-0.3.0/mewAvg/R/accessor_funs.R |only
mewAvg-0.3.0/mewAvg/R/class_defs.R |only
mewAvg-0.3.0/mewAvg/R/generic_funs.R |only
mewAvg-0.3.0/mewAvg/R/mewAvg.R |only
mewAvg-0.3.0/mewAvg/R/mew_accum.R |only
mewAvg-0.3.0/mewAvg/R/mew_avg.R |only
mewAvg-0.3.0/mewAvg/R/mew_init.R |only
mewAvg-0.3.0/mewAvg/R/mew_mean.R |only
mewAvg-0.3.0/mewAvg/man/mewAccum.Rd |only
mewAvg-0.3.0/mewAvg/man/mewAvg-package.Rd |only
mewAvg-0.3.0/mewAvg/man/mewAvg.Rd | 255 +++++++++++++-------------
mewAvg-0.3.0/mewAvg/man/mewGetMean.Rd |only
mewAvg-0.3.0/mewAvg/man/mewInit.Rd |only
mewAvg-0.3.0/mewAvg/man/mewMean.Rd |only
mewAvg-0.3.0/mewAvg/man/mewTyp-class.Rd |only
mewAvg-0.3.0/mewAvg/man/show-mewTyp-method.Rd |only
mewAvg-0.3.0/mewAvg/src/add_to_bin.c |only
mewAvg-0.3.0/mewAvg/src/add_x_sum_part.c |only
mewAvg-0.3.0/mewAvg/src/assign_long_vec.c |only
mewAvg-0.3.0/mewAvg/src/bin_not_full_mean.c |only
mewAvg-0.3.0/mewAvg/src/mean_calc.c |only
mewAvg-0.3.0/mewAvg/src/replace_col.c |only
30 files changed, 168 insertions(+), 140 deletions(-)
Title: latent effect adjustment after primary projection
Diff between leapp versions 1.1 dated 2014-01-06 and 1.2 dated 2014-07-22
Description: These functions take a gene expression value matrix, a
primary covariate vector, an additional known covariates
matrix. A two stage analysis is applied to counter the effects
of latent variables on the rankings of hypotheses. The
estimation and adjustment of latent effects are proposed by
Sun, Zhang and Owen (2011). "leapp" is developed in the
context of microarray experiments, but may be used as a general
tool for high throughput data sets where dependence may be
involved.
Author: Yunting Sun
Maintainer: Yunting Sun
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
NAMESPACE | 3 +++
R/leapp.R | 7 ++++---
4 files changed, 15 insertions(+), 11 deletions(-)
Title: A smarter JSON encoder/decoder for R
Diff between jsonlite versions 0.9.8 dated 2014-06-02 and 0.9.9 dated 2014-07-22
Description: This package is a fork of the RJSONIO package by Duncan Temple
Lang. It builds on the same libjson c++ parser, but implements a smarter
mapping between JSON data and R classes. The vignette describes
the behavior in great detail. In addition to drop-in replacements for
toJSON and fromJSON, the package contains funtions to validate, prettify
and minify JSON, and many unit tests to verify that all edge cases
are encoded and decoded consistently for use with dynamic data in systems
and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Jonathan Wallace
Maintainer: Jeroen Ooms
jsonlite-0.9.8/jsonlite/vignettes/json-apis-concordance.tex |only
jsonlite-0.9.8/jsonlite/vignettes/json-mapping-concordance.tex |only
jsonlite-0.9.8/jsonlite/vignettes/json-opencpu-concordance.tex |only
jsonlite-0.9.9/jsonlite/DESCRIPTION | 10
jsonlite-0.9.9/jsonlite/MD5 | 51 +--
jsonlite-0.9.9/jsonlite/NEWS | 6
jsonlite-0.9.9/jsonlite/R/asJSON.data.frame.R | 15 +
jsonlite-0.9.9/jsonlite/R/download.R | 4
jsonlite-0.9.9/jsonlite/R/simplify.R | 2
jsonlite-0.9.9/jsonlite/R/toJSON.R | 2
jsonlite-0.9.9/jsonlite/build/vignette.rds |binary
jsonlite-0.9.9/jsonlite/inst/doc/json-apis.R | 130 ++++------
jsonlite-0.9.9/jsonlite/inst/doc/json-apis.Rnw | 2
jsonlite-0.9.9/jsonlite/inst/doc/json-apis.pdf |binary
jsonlite-0.9.9/jsonlite/inst/doc/json-mapping.R | 41 ---
jsonlite-0.9.9/jsonlite/inst/doc/json-mapping.Rnw | 6
jsonlite-0.9.9/jsonlite/inst/doc/json-mapping.pdf |binary
jsonlite-0.9.9/jsonlite/inst/doc/json-opencpu.R | 8
jsonlite-0.9.9/jsonlite/inst/doc/json-opencpu.Rnw | 11
jsonlite-0.9.9/jsonlite/inst/doc/json-opencpu.pdf |binary
jsonlite-0.9.9/jsonlite/inst/tests/flatten.R |only
jsonlite-0.9.9/jsonlite/inst/tests/test-fromJSON-matrix.R | 4
jsonlite-0.9.9/jsonlite/inst/tests/test-libjson-utf8.R | 1
jsonlite-0.9.9/jsonlite/inst/tests/test-toJSON-dataframe.R |only
jsonlite-0.9.9/jsonlite/man/fromJSON.Rd | 2
jsonlite-0.9.9/jsonlite/vignettes/json-apis.Rnw | 2
jsonlite-0.9.9/jsonlite/vignettes/json-mapping.Rnw | 6
jsonlite-0.9.9/jsonlite/vignettes/json-opencpu.Rnw | 11
jsonlite-0.9.9/jsonlite/vignettes/references.bib | 22 -
29 files changed, 155 insertions(+), 181 deletions(-)
Title: Graphical lasso- estimation of Gaussian graphical models
Diff between glasso versions 1.7 dated 2011-09-14 and 1.8 dated 2014-07-22
Description: Graphical lasso
Author: Jerome Friedman, Trevor Hastie and Rob Tibshirani
Maintainer: Rob Tibshirani
glasso-1.7/glasso/INDEX |only
glasso-1.7/glasso/src/Makevars |only
glasso-1.8/glasso/DESCRIPTION | 7
glasso-1.8/glasso/MD5 | 19
glasso-1.8/glasso/R/glasso.R | 6
glasso-1.8/glasso/cleanup |only
glasso-1.8/glasso/configure | 3534 +++++++++++++++++++++---------------
glasso-1.8/glasso/configure.in | 42
glasso-1.8/glasso/man/glasso.Rd | 4
glasso-1.8/glasso/man/glassopath.Rd | 3
glasso-1.8/glasso/src/Makevars.win | 2
glasso-1.8/glasso/src/glasso.f90 | 6
12 files changed, 2205 insertions(+), 1418 deletions(-)
Title: Functions, data and code for count data.
Diff between COUNT versions 1.3.0 dated 2014-07-16 and 1.3.1 dated 2014-07-22
Description: Functions, data and code for Hilbe, J.M. 2011. Negative Binomial Regression, 2-nd Edition (Cambridge University Press) and Hilbe, J.M. 2014. Modeling Count Data (Cambridge University Press).
Author: Joseph M Hilbe
Maintainer: Andrew Robinson
DESCRIPTION | 12 ++++++------
MD5 | 3 ++-
inst/HILBE_SCRIPTS/HILBE-MCD-Rcode.r |only
3 files changed, 8 insertions(+), 7 deletions(-)