Fri, 25 Jul 2014

New package nicheROVER with initial version 1.0
Package: nicheROVER
Title: (Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches
Version: 1.0
Date: 2014-07-21
Authors@R: c(person("Martin", "Lysy", role = c("aut", "cre"), email = "mlysy@uwaterloo.ca"), person("Ashley D.", "Stasko", role = c("aut", "ctb")), person("Heidi K.", "Swanson", role = c("aut", "ctb")))
Description: This package uses a probabilistic method to calculate niche regions and pairwise niche overlap using multidimensional niche indicator data (e.g., stable isotopes, environmental variables, etc.). The niche region is defined as the joint probability density function of the multidimensional niche indicators at a user-defined probability alpha (e.g., 95%). Uncertainty is accounted for in a Bayesian framework, and the method can be extended to three or more indicator dimensions. It provides directional estimates of niche overlap, accounts for species-specific distributions in multivariate niche space, and produces unique and consistent bivariate projections of the multivariate niche region. A forthcoming article by Swanson et al. (Ecology, 2014) provides a detailed description of the methodology. See the package vignette for a worked example using fish stable isotope data.
Depends: R (>= 1.9.0), mvtnorm
Suggests: knitr
VignetteBuilder: knitr
License: GPL-2
LazyData: true
Packaged: 2014-07-25 17:41:04 UTC; Jerome
Author: Martin Lysy [aut, cre], Ashley D. Stasko [aut, ctb], Heidi K. Swanson [aut, ctb]
Maintainer: Martin Lysy
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-25 21:15:59

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New package pryr with initial version 0.1
Type: Package
Package: pryr
Title: Tools for computing on the language
Description: Useful tools to pry back the covers of R and understand the language at a deeper level.
Authors@R: c( person("Hadley", "Wickham", email = "h.wickham@gmail.com", role = c("aut", "cre")), person("R Core team", role = "ctb", comment = "Some code extracted from base R"))
License: GPL-2
URL: https://github.com/hadley/pryr
BugReports: https://github.com/hadley/pryr/issues
Version: 0.1
LinkingTo: Rcpp
Imports: stringr, codetools, methods, Rcpp (>= 0.11.0)
Suggests: testthat (>= 0.8.0)
Packaged: 2014-07-22 19:47:04 UTC; hadley
Author: Hadley Wickham [aut, cre], R Core team [ctb] (Some code extracted from base R)
Maintainer: Hadley Wickham
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-07-25 20:28:24

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New package phylin with initial version 1.0
Package: phylin
Type: Package
Title: Spatial interpolation of genetic data
Version: 1.0
Date: 2014-06-06
Author: Pedro Tarroso, Guillermo Velo-Anton, Silvia Carvalho
Maintainer: Pedro Tarroso
Suggests: geometry
Description: This package provides functions for the spatial interpolation of genetic distances between samples. The interpolation is based on a modified kriging method that accepts a genetic distance matrix and generates a map of probability of lineage presence. This package also offers tools to generate a map of potential contact zones between groups with user-defined thresholds in the tree to account for old and recent divergence. Additionally, it has functions for IDW interpolation using genetic data and midpoints.
License: GPL (>= 2)
URL: http://www.r-project.org, http://webpages.icav.up.pt/pessoas/ptarroso/phylin/phylin.html
Packaged: 2014-07-25 14:47:33 UTC; pedro
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-25 18:42:31

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Package MRCV updated to version 0.3-2 with previous version 0.3-1 dated 2014-04-10

Title: Methods for Analyzing Multiple Response Categorical Variables (MRCVs)
Description: The MRCV package provides functions for analyzing the association between one single response categorical variable (SRCV) and one multiple response categorical variable (MRCV), or between two or three MRCVs. A modified Pearson chi-square statistic can be used to test for marginal independence for the one or two MRCV case, or a more general loglinear modeling approach can be used to examine various other structures of association for the two or three MRCV case. Bootstrap- and asymptotic-based standardized residuals and model-predicted odds ratios are available, in addition to other descriptive information.
Author: Natalie Koziol and Chris Bilder
Maintainer: Natalie Koziol

Diff between MRCV versions 0.3-1 dated 2014-04-10 and 0.3-2 dated 2014-07-25

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Package dcGOR updated to version 1.0.2 with previous version 1.0.0 dated 2014-07-02

Title: an R package tailored to the needs of analysing ontologies and annotations on protein domains
Description: The 'dcGOR' package is intended to provide the wider bioinformatics community with the use of the dcGO database. The dcGO (http://supfam.org/SUPERFAMILY/dcGO) is a comprehensive domain-centric database for annotating protein domains using a variety of ontologies on functions, phenotypes, diseases and more. With the package, users are expected to easily analyse and visualise domain-centric ontologies and annotations. Supported analyses include but are not limited to: easy access to a wide range of ontologies and their domain-centric annotations; enrichment analysis and visual outputs; semantic similarity between annotated domains from ontology term semantic similarity; random walk with restart upon domain-domain (semantic) networks; and high-performance parallel computing.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang

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New package cosinor with initial version 1.0
Package: cosinor
Type: Package
Title: Tools for estimating and predicting the cosinor model
Version: 1.0
Author: Michael Sachs
Maintainer: Michael Sachs
Description: cosinor is a set of simple functions that transforms longitudinal data to estimate the cosinor linear model. Methods are given to summarize the mean, amplitude and acrophase, to predict the mean annual outcome value, and to test the coefficients.
URL: http://github.com/sachsmc/cosinor
Depends: R (>= 2.11.0)
Imports: ggplot2
License: MIT + file LICENSE
LazyData: true
Packaged: 2014-07-25 15:18:01 UTC; sachsmc
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-07-25 18:37:49

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Package AppliedPredictiveModeling updated to version 1.1-6 with previous version 1.1-5 dated 2014-02-03

Title: Functions and Data Sets for 'Applied Predictive Modeling'
Description: A few functions and several data set for the Springer book 'Applied Predictive Modeling'
Author: Max Kuhn, Kjell Johnson
Maintainer: Max Kuhn

Diff between AppliedPredictiveModeling versions 1.1-5 dated 2014-02-03 and 1.1-6 dated 2014-07-25

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Package Rankcluster updated to version 0.92.9 with previous version 0.92 dated 2014-02-12

Title: Model-based clustering for multivariate partial ranking data
Description: This package proposes a model-based clustering algorithm for ranking data. Multivariate rankings as well as partial rankings are taken into account. This algorithm is based on an extension of the Insertion Sorting Rank (ISR) model for ranking data, which is a meaningful and effective model parametrized by a position parameter (the modal ranking, quoted by mu) and a dispersion parameter (quoted by pi). The heterogeneity of the rank population is modelled by a mixture of ISR, whereas conditional independence assumption is considered for multivariate rankings.
Author: Quentin Grimonprez, Julien Jacques
Maintainer: Quentin Grimonprez

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Package quantregGrowth updated to version 0.3-0 with previous version 0.1-3 dated 2014-07-02

Title: Growth charts via regression quantiles
Description: Fits non-crossing regression quantiles as a function of linear covariates and a smooth terms via B-splines with quadratic penalties.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo

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Package MSBVAR updated to version 0.9-1 with previous version 0.9-0 dated 2014-06-02

Title: Markov-Switching, Bayesian, Vector Autoregression Models
Description: Provides methods for estimating frequentist and Bayesian Vector Autoregression (VAR) models and Markov-switching Bayesian VAR (MSBVAR). Functions for reduced form and structural VAR models are also available. Includes methods for the generating posterior inferences for these models, forecasts, impulse responses (using likelihood-based error bands), and forecast error decompositions. Also includes utility functions for plotting forecasts and impulse responses, and generating draws from Wishart and singular multivariate normal densities. Current version includes functionality to build and evaluate models with Markov switching.
Author: Patrick Brandt [aut, cre], W. Ryan Davis [cre]
Maintainer: Patrick Brandt

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Package rngWELL updated to version 0.10-3 with previous version 0.10-2 dated 2013-06-11

Title: toolbox for WELL random number generators.
Description: It is a dedicated package to WELL pseudo random generators, which were introduced in Panneton et al. (2006), ``Improved Long-Period Generators Based on Linear Recurrences Modulo 2'', ACM Transactions on Mathematical Software. But this package is not intended to be used directly, you are strongly __encouraged__ to use the 'randtoolbox' package, which depends on this package.
Author: all C code by F. Panneton, P. L'Ecuyer and M. Matsumoto and R port by Christophe Dutang and Petr Savicky .
Maintainer: Christophe Dutang

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Package ClustVarLV updated to version 1.3 with previous version 1.2 dated 2014-04-04

Title: Clustering of variables around Latent Variables
Description: This package provides a set of functions that allows us to cluster a set of variables around Latent Variables. Each group is associated with a latent variable. External variables measured on the same observations or/and additional information on the variables can be taken into account.
Author: Evelyne Vigneau, Mingkun Chen
Maintainer: Evelyne Vigneau

Diff between ClustVarLV versions 1.2 dated 2014-04-04 and 1.3 dated 2014-07-25

 DESCRIPTION            |   16 +--
 MD5                    |   39 +++++----
 R/CLV.R                |   21 ++--
 R/CLV_kmeans.R         |  208 +++++++------------------------------------------
 R/LCLV.R               |    4 
 R/clvk_kp1.R           |only
 R/clvk_none.R          |only
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 R/consol_affect.R      |   22 +----
 R/consol_affect_k.R    |only
 R/consol_calcul_s.R    |only
 R/descrip_gp.R         |   50 +++++++++--
 R/gpmb_on_pc.R         |   17 +++-
 R/print.clvkmeans.r    |    8 +
 data/AUPA_psycho.rda   |only
 man/AUPA_psycho.Rd     |only
 man/CLV.Rd             |   76 ++++++++---------
 man/CLV_kmeans.Rd      |   48 +++++------
 man/LCLV.Rd            |   89 ++++++++++----------
 man/descrip_gp.Rd      |    8 -
 man/gpmb_on_pc.Rd      |   10 +-
 man/print.clv.Rd       |    4 
 man/print.clvkmeans.Rd |    4 
 man/print.lclv.Rd      |    4 
 24 files changed, 265 insertions(+), 363 deletions(-)

More information about ClustVarLV at CRAN
Permanent link

Package CAMAN (with last version 0.70) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-06-30 0.70
2013-04-29 0.67
2013-04-19 0.66

Permanent link
Package edmr (with last version 0.6.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-10 0.6.3

Permanent link
Package TreeSimGM updated to version 1.2 with previous version 1.1 dated 2013-02-21

Title: Simulating Phylogenetic Trees under a General Model
Description: The package is a flexible simulation tool for phylogenetic trees under a general model. It is possible to assume any probability distribution for the waiting time until speciation and extinction independently. Thus, TreeSimGM allows to simulate stochastic phylogenetic trees using any probability distribution and parameters for speciation and extinction. The speciation modes have all binary splits and are: (i) symmetric, where for every speciation event new waiting times until speciation and extinction are drawn for both daughter lineages; and (ii) asymmetric, where a speciation event results in one species with new waiting times, and another that carries the extinction time and age of its ancestor. Those two modes were inspired by allopatric and peripatric speciation respectively.Both models (symmetric and asymmetric) were created and implemented so that different processes (distributions) for speciation and extinction could be independently and explicitly specified. It is also possible to have an implicit extinction process by setting the extinction rate to zero.
Author: Oskar Hagen, Tanja Stadler
Maintainer: Oskar Hagen

Diff between TreeSimGM versions 1.1 dated 2013-02-21 and 1.2 dated 2014-07-25

 DESCRIPTION              |   30 +------
 MD5                      |   10 +-
 R/sim.taxa.R             |  131 ++++++++++++++++----------------
 man/TreeSimGM-package.Rd |   98 ++++++++++++------------
 man/sim.age.Rd           |  123 +++++++++++++++---------------
 man/sim.taxa.Rd          |  187 +++++++++++++++++++++++------------------------
 6 files changed, 283 insertions(+), 296 deletions(-)

More information about TreeSimGM at CRAN
Permanent link

Package RandomFields updated to version 3.0.30 with previous version 3.0.10 dated 2014-01-21

Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields; conditional simulation; kriging; maximum likelihood estimation
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Peter Menck [aut], Sebastian Gross [aut], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather

Diff between RandomFields versions 3.0.10 dated 2014-01-21 and 3.0.30 dated 2014-07-25

 RandomFields-3.0.10/RandomFields/R/Methods-Others.R                       |only
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 RandomFields-3.0.30/RandomFields/NAMESPACE                                |   65 
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 RandomFields-3.0.30/RandomFields/R/RF_GLOBALS.R                           |   62 
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 RandomFields-3.0.30/RandomFields/R/RMmodels.R                             |  647 +-
 RandomFields-3.0.30/RandomFields/R/SpecialRMmodel.R                       |   86 
 RandomFields-3.0.30/RandomFields/R/auxiliary.R                            |   47 
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 RandomFields-3.0.30/RandomFields/R/empvario.R                             | 1100 +--
 RandomFields-3.0.30/RandomFields/R/fitgauss.R                             | 1512 +++--
 RandomFields-3.0.30/RandomFields/R/generatemodels.R                       |   23 
 RandomFields-3.0.30/RandomFields/R/getNset.R                              |   98 
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 RandomFields-3.0.30/RandomFields/man/RFdistr.Rd                           |   14 
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 RandomFields-3.0.30/RandomFields/man/RFempiricalvariogram.Rd              |   69 
 RandomFields-3.0.30/RandomFields/man/RFfit-class.Rd                       |  218 
 RandomFields-3.0.30/RandomFields/man/RFfit.Rd                             |   30 
 RandomFields-3.0.30/RandomFields/man/RFformula.Rd                         |   11 
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 RandomFields-3.0.30/RandomFields/man/RFgetMethodNames.Rd                  |   13 
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 RandomFields-3.0.30/RandomFields/man/RFgui.Rd                             |   13 
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 RandomFields-3.0.30/RandomFields/man/RFoldstyle.Rd                        |   12 
 RandomFields-3.0.30/RandomFields/man/RFoptions.Rd                         | 2795 +++++-----
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 RandomFields-3.0.30/RandomFields/man/RFsimulate.Rd                        |   18 
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 RandomFields-3.0.30/RandomFields/man/RFsimulate.sophisticated.examples.Rd |  196 
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 RandomFields-3.0.30/RandomFields/man/RMS.Rd                               |    7 
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 RandomFields-3.0.30/RandomFields/man/RMbessel.Rd                          |   28 
 RandomFields-3.0.30/RandomFields/man/RMbigneiting.Rd                      |    9 
 RandomFields-3.0.30/RandomFields/man/RMbiwm.Rd                            |    7 
 RandomFields-3.0.30/RandomFields/man/RMbr2.Rd                             |    9 
 RandomFields-3.0.30/RandomFields/man/RMbrownresnick.Rd                    |   22 
 RandomFields-3.0.30/RandomFields/man/RMcauchy.Rd                          |    9 
 RandomFields-3.0.30/RandomFields/man/RMcauchytbm.Rd                       |    9 
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 RandomFields-3.0.30/RandomFields/man/weather.Rd                           |  175 
 RandomFields-3.0.30/RandomFields/src/Brown.cc                             | 1477 +++--
 RandomFields-3.0.30/RandomFields/src/Covariance.h                         |   42 
 RandomFields-3.0.30/RandomFields/src/D.H.cc                               |    4 
 RandomFields-3.0.30/RandomFields/src/Families.cc                          |  648 +-
 RandomFields-3.0.30/RandomFields/src/Gneiting.cc                          |   62 
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 RandomFields-3.0.30/RandomFields/src/KeyInfo.cc                           |  245 
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 RandomFields-3.0.30/RandomFields/src/PoissonPolygon.cc                    |  133 
 RandomFields-3.0.30/RandomFields/src/PoissonPolygon.h                     |    1 
 RandomFields-3.0.30/RandomFields/src/Primitive.cc                         |  907 ++-
 RandomFields-3.0.30/RandomFields/src/RF.h                                 |  545 +
 RandomFields-3.0.30/RandomFields/src/RandomFields.h                       |   13 
 RandomFields-3.0.30/RandomFields/src/Specific.cc                          |   60 
 RandomFields-3.0.30/RandomFields/src/Xempvario.cc                         |   14 
 RandomFields-3.0.30/RandomFields/src/auxiliary.cc                         |  103 
 RandomFields-3.0.30/RandomFields/src/basic.h                              |    8 
 RandomFields-3.0.30/RandomFields/src/circulant.cc                         |  127 
 RandomFields-3.0.30/RandomFields/src/direct.cc                            |  111 
 RandomFields-3.0.30/RandomFields/src/empvario.cc                          |  581 +-
 RandomFields-3.0.30/RandomFields/src/error.h                              |    5 
 RandomFields-3.0.30/RandomFields/src/extremes.cc                          |  910 ++-
 RandomFields-3.0.30/RandomFields/src/families.h                           |   21 
 RandomFields-3.0.30/RandomFields/src/fftVario.cc                          |  466 -
 RandomFields-3.0.30/RandomFields/src/gauss.cc                             |  470 +
 RandomFields-3.0.30/RandomFields/src/getNset.cc                           |  464 +
 RandomFields-3.0.30/RandomFields/src/hyperplan.cc                         |   21 
 RandomFields-3.0.30/RandomFields/src/initNerror.cc                        |  491 +
 RandomFields-3.0.30/RandomFields/src/kriging.cc                           |    4 
 RandomFields-3.0.30/RandomFields/src/nugget.cc                            |   43 
 RandomFields-3.0.30/RandomFields/src/operator.cc                          |  699 +-
 RandomFields-3.0.30/RandomFields/src/plusmalS.cc                          | 1684 ++++--
 RandomFields-3.0.30/RandomFields/src/primitive.h                          |   17 
 RandomFields-3.0.30/RandomFields/src/randomshape.h                        |   30 
 RandomFields-3.0.30/RandomFields/src/sequential.cc                        |   21 
 RandomFields-3.0.30/RandomFields/src/simu.cc                              |  535 +
 RandomFields-3.0.30/RandomFields/src/spectral.cc                          |   44 
 RandomFields-3.0.30/RandomFields/src/startGetNset.cc                      |  281 -
 RandomFields-3.0.30/RandomFields/src/tbm.cc                               |  264 
 RandomFields-3.0.30/RandomFields/src/trend.cc                             |  119 
 RandomFields-3.0.30/RandomFields/src/userinterfaces.cc                    |  496 +
 RandomFields-3.0.30/RandomFields/src/variogramAndCo.cc                    |   85 
 253 files changed, 17805 insertions(+), 11008 deletions(-)

More information about RandomFields at CRAN
Permanent link

Package mime updated to version 0.1.2 with previous version 0.1.1 dated 2014-05-12

Title: Map filenames to MIME types
Description: This package guesses the MIME type from a filename extension using the data derived from /etc/mime.types in UNIX-type systems.
Author: Yihui Xie
Maintainer: Yihui Xie

Diff between mime versions 0.1.1 dated 2014-05-12 and 0.1.2 dated 2014-07-25

 DESCRIPTION |    8 ++++----
 MD5         |    9 +++++----
 NEWS        |    7 +++++++
 R/mime.R    |    5 +++--
 R/mimemap.R |    2 +-
 tests       |only
 6 files changed, 20 insertions(+), 11 deletions(-)

More information about mime at CRAN
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Package markdown updated to version 0.7.2 with previous version 0.7 dated 2014-05-12

Title: Markdown rendering for R
Description: Markdown is a plain-text formatting syntax that can be converted to XHTML or other formats. This package provides R bindings to the Sundown markdown rendering library.
Author: JJ Allaire, Jeffrey Horner, Vicent Marti, and Natacha Porte
Maintainer: Yihui Xie

Diff between markdown versions 0.7 dated 2014-05-12 and 0.7.2 dated 2014-07-25

 DESCRIPTION                     |    8 +-
 MD5                             |   20 ++---
 NEWS                            |   10 ++
 R/renderMarkdown.R              |   26 +++----
 build/vignette.rds              |binary
 inst/doc/markdown-examples.R    |  120 ++++++++++++++++++++++++++++++++++-
 inst/doc/markdown-examples.html |    3 
 inst/doc/markdown-output.R      |  137 +++++++++++++++++++++++++++++++++++++++-
 inst/doc/markdown-output.html   |    3 
 man/markdownToHTML.Rd           |    4 -
 tests/tests.Rout.save           |    2 
 11 files changed, 293 insertions(+), 40 deletions(-)

More information about markdown at CRAN
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Package inTrees updated to version 1.1 with previous version 1.0 dated 2014-07-14

Title: Interpret Tree Ensembles
Description: For tree ensembles such as random forests, regularized random forests and gradient boosted trees, this package provides functions for: extracting, measuring and pruning rules; selecting a compact rule set; summarizing rules into a learner; calculating frequent variable interactions; formatting rules in latex code.
Author: Houtao Deng
Maintainer: Houtao Deng

Diff between inTrees versions 1.0 dated 2014-07-14 and 1.1 dated 2014-07-25

 DESCRIPTION             |   11 --
 MD5                     |   68 ++++++-------
 NAMESPACE               |    3 
 NEWS                    |    8 +
 R/GBM2List.R            |   26 ++--
 R/Num2Level.R           |   17 +--
 R/RF2List.R             |   17 +--
 R/applyLearner.R        |   30 ++---
 R/buildLearner.R        |  118 ++++++++++------------
 R/computeRuleInfor.R    |    9 -
 R/dataSimulate.R        |   80 ++++++++-------
 R/dicretizeVector.R     |   33 ++----
 R/extractRules.R        |   54 ++++------
 R/formatGBM.R           |   44 +++-----
 R/getFreqPattern.R      |   80 ++++++++-------
 R/getRuleMetric.R       |   32 +++---
 R/getTypeX.R            |   18 +--
 R/inTrees-internal.R    |  251 +++++++++++++++++++++++-------------------------
 R/lookupRule.R          |   21 +---
 R/measureRule.R         |   64 ++++++------
 R/presentRules.R        |   46 +++-----
 R/pruneRule.R           |   14 +-
 R/pruneSingleRule.R     |   50 +++++----
 R/rule2Table.R          |   16 +--
 R/ruleList2Exec.R       |   14 +-
 R/selectRuleRRF.R       |   30 ++---
 R/singleRuleList2Exec.R |   36 +++---
 R/sortRule.R            |   11 +-
 R/treeVisit.R           |  130 ++++++++++++------------
 R/voteAllRules.R        |only
 man/buildLearner.Rd     |   19 +--
 man/dataSimulate.Rd     |   45 +++-----
 man/measureRule.Rd      |    5 
 man/pruneRule.Rd        |   28 ++---
 man/pruneSingleRule.Rd  |   20 ++-
 man/voteAllRules.Rd     |only
 36 files changed, 714 insertions(+), 734 deletions(-)

More information about inTrees at CRAN
Permanent link

Package animation updated to version 2.3 with previous version 2.2 dated 2013-04-14

Title: A gallery of animations in statistics and utilities to create animations
Description: This package contains a variety of functions for animations in statistics, covering areas such as probability theory, mathematical statistics, multivariate statistics, nonparametric statistics, sampling survey, linear models, time series, computational statistics, data mining and machine learning. These functions might be helpful in teaching statistics and data analysis. Also provided in this package are several approaches to save animations to various formats, e.g. Flash, GIF, HTML pages, PDF and videos (saveSWF(), saveGIF(), saveHTML(), saveLatex(), and saveVideo() respectively). PDF animations can be inserted into Sweave/knitr easily.
Author: Lijia Yu [ctb], Weicheng Zhu [ctb], Yihui Xie [cre, aut]
Maintainer: Yihui Xie

Diff between animation versions 2.2 dated 2013-04-14 and 2.3 dated 2014-07-25

 animation-2.2/animation/R/ani.stop.R                                 |only
 animation-2.2/animation/R/animation-defunct.R                        |only
 animation-2.2/animation/inst/misc/scianimator/css/shCore.css         |only
 animation-2.2/animation/inst/misc/scianimator/css/shThemeDefault.css |only
 animation-2.2/animation/inst/misc/scianimator/js/shAutoloader.js     |only
 animation-2.2/animation/inst/misc/scianimator/js/shBrushR.js         |only
 animation-2.2/animation/inst/misc/scianimator/js/shCore.js           |only
 animation-2.2/animation/man/ani.stop.Rd                              |only
 animation-2.2/animation/man/animation-defunct.Rd                     |only
 animation-2.2/animation/readme.md                                    |only
 animation-2.2/animation/tests/flash-animation.r                      |only
 animation-2.2/animation/tests/gif-animation.r                        |only
 animation-2.2/animation/tests/html-animation.r                       |only
 animation-2.3/animation/DESCRIPTION                                  |   54 -
 animation-2.3/animation/MD5                                          |  282 +++---
 animation-2.3/animation/NAMESPACE                                    |   52 +
 animation-2.3/animation/NEWS                                         |   35 
 animation-2.3/animation/R/BM.circle.R                                |   48 -
 animation-2.3/animation/R/MC.hitormiss.R                             |   91 +-
 animation-2.3/animation/R/MC.samplemean.R                            |  100 +-
 animation-2.3/animation/R/Rosling.bubbles.R                          |   32 
 animation-2.3/animation/R/ani.options.R                              |  409 ++++------
 animation-2.3/animation/R/ani.pause.R                                |   27 
 animation-2.3/animation/R/ani.record.R                               |  133 +--
 animation-2.3/animation/R/ani.start.R                                |   59 -
 animation-2.3/animation/R/animation-package.R                        |   39 
 animation-2.3/animation/R/bisection.method.R                         |  151 +--
 animation-2.3/animation/R/boot.iid.R                                 |  126 +--
 animation-2.3/animation/R/boot.lowess.R                              |   55 -
 animation-2.3/animation/R/brownian.motion.R                          |   50 -
 animation-2.3/animation/R/buffon.needle.R                            |   11 
 animation-2.3/animation/R/clt.ani.R                                  |  128 +--
 animation-2.3/animation/R/conf.int.R                                 |   40 
 animation-2.3/animation/R/cv.ani.R                                   |   69 -
 animation-2.3/animation/R/cv.nfeaturesLDA.R                          |  190 ++--
 animation-2.3/animation/R/ecol.death.sim.R                           |   92 +-
 animation-2.3/animation/R/flip.coin.R                                |  151 +--
 animation-2.3/animation/R/g.brownian.motion.R                        |  123 +--
 animation-2.3/animation/R/grad.desc.R                                |   49 -
 animation-2.3/animation/R/im.convert.R                               |  302 +++----
 animation-2.3/animation/R/kfcv.R                                     |   33 
 animation-2.3/animation/R/kmeans.ani.R                               |  155 +--
 animation-2.3/animation/R/knn.ani.R                                  |  274 +++---
 animation-2.3/animation/R/least.squares.R                            |  180 ++--
 animation-2.3/animation/R/lln.ani.R                                  |   93 +-
 animation-2.3/animation/R/moving.block.R                             |   95 +-
 animation-2.3/animation/R/mwar.ani.R                                 |  139 +--
 animation-2.3/animation/R/newton.method.R                            |  152 +--
 animation-2.3/animation/R/pdftk.R                                    |   66 -
 animation-2.3/animation/R/price.ani.R                                |   89 +-
 animation-2.3/animation/R/qpdf.R                                     |   55 -
 animation-2.3/animation/R/quincunx.R                                 |  127 +--
 animation-2.3/animation/R/quincunx2.R                                |only
 animation-2.3/animation/R/sample.cluster.R                           |   27 
 animation-2.3/animation/R/sample.ratio.R                             |   35 
 animation-2.3/animation/R/sample.simple.R                            |   25 
 animation-2.3/animation/R/sample.strat.R                             |   26 
 animation-2.3/animation/R/sample.system.R                            |   22 
 animation-2.3/animation/R/saveGIF.R                                  |   56 -
 animation-2.3/animation/R/saveHTML.R                                 |  144 ++-
 animation-2.3/animation/R/saveLatex.R                                |  159 +--
 animation-2.3/animation/R/saveSWF.R                                  |  102 +-
 animation-2.3/animation/R/saveVideo.R                                |   65 -
 animation-2.3/animation/R/sim.qqnorm.R                               |   10 
 animation-2.3/animation/R/utils.R                                    |only
 animation-2.3/animation/R/vi.grid.illusion.R                         |   21 
 animation-2.3/animation/R/vi.lilac.chaser.R                          |   14 
 animation-2.3/animation/R/zzz.R                                      |    8 
 animation-2.3/animation/README.md                                    |only
 animation-2.3/animation/demo/CLEvsLAL.R                              |  117 +-
 animation-2.3/animation/demo/IBM.R                                   |   54 -
 animation-2.3/animation/demo/Mandelbrot.R                            |   42 -
 animation-2.3/animation/demo/Sierpinski.R                            |   48 -
 animation-2.3/animation/demo/Sweave_animation.R                      |   14 
 animation-2.3/animation/demo/Xmas.R                                  |   30 
 animation-2.3/animation/demo/Xmas2.R                                 |   40 
 animation-2.3/animation/demo/Xmas_card.R                             |   38 
 animation-2.3/animation/demo/busybees.R                              |   64 -
 animation-2.3/animation/demo/elephant.R                              |   62 -
 animation-2.3/animation/demo/fire.R                                  |   66 -
 animation-2.3/animation/demo/fireworks.R                             |  157 ++-
 animation-2.3/animation/demo/flowers.R                               |   16 
 animation-2.3/animation/demo/game_of_life.R                          |  125 +--
 animation-2.3/animation/demo/ggobi_animation.R                       |   28 
 animation-2.3/animation/demo/hanoi.R                                 |   64 -
 animation-2.3/animation/demo/jumpingHorse.R                          |   76 -
 animation-2.3/animation/demo/pollen.R                                |   33 
 animation-2.3/animation/demo/recur.leaf.R                            |   40 
 animation-2.3/animation/demo/recur.snow.R                            |   68 -
 animation-2.3/animation/demo/recur.tree.R                            |  119 +-
 animation-2.3/animation/demo/rgl_animation.R                         |   55 -
 animation-2.3/animation/demo/use_Cairo.R                             |   28 
 animation-2.3/animation/demo/wordrotation.R                          |    8 
 animation-2.3/animation/inst/misc/scianimator/index.html             |   15 
 animation-2.3/animation/man/BM.circle.Rd                             |   38 
 animation-2.3/animation/man/CLELAL09.Rd                              |   35 
 animation-2.3/animation/man/HuSpeech.Rd                              |   13 
 animation-2.3/animation/man/MC.hitormiss.Rd                          |   64 -
 animation-2.3/animation/man/MC.samplemean.Rd                         |   84 --
 animation-2.3/animation/man/ObamaSpeech.Rd                           |    8 
 animation-2.3/animation/man/Rosling.bubbles.Rd                       |   90 +-
 animation-2.3/animation/man/ani.options.Rd                           |  333 +++-----
 animation-2.3/animation/man/ani.pause.Rd                             |   19 
 animation-2.3/animation/man/ani.record.Rd                            |  109 +-
 animation-2.3/animation/man/ani.start.Rd                             |   48 -
 animation-2.3/animation/man/animation-package.Rd                     |  151 +--
 animation-2.3/animation/man/bisection.method.Rd                      |  100 +-
 animation-2.3/animation/man/boot.iid.Rd                              |   97 +-
 animation-2.3/animation/man/boot.lowess.Rd                           |   31 
 animation-2.3/animation/man/brownian.motion.Rd                       |   58 -
 animation-2.3/animation/man/buffon.needle.Rd                         |  133 +--
 animation-2.3/animation/man/clt.ani.Rd                               |  101 +-
 animation-2.3/animation/man/conf.int.Rd                              |   72 -
 animation-2.3/animation/man/convert.Rd                               |  160 +--
 animation-2.3/animation/man/cv.ani.Rd                                |   73 -
 animation-2.3/animation/man/cv.nfeaturesLDA.Rd                       |  122 +-
 animation-2.3/animation/man/ecol.death.sim.Rd                        |   54 -
 animation-2.3/animation/man/flip.coin.Rd                             |  105 +-
 animation-2.3/animation/man/g.brownian.motion.Rd                     |   65 -
 animation-2.3/animation/man/grad.desc.Rd                             |  150 +--
 animation-2.3/animation/man/iatemp.Rd                                |    5 
 animation-2.3/animation/man/kfcv.Rd                                  |   22 
 animation-2.3/animation/man/kmeans.ani.Rd                            |  106 +-
 animation-2.3/animation/man/knn.ani.Rd                               |  132 +--
 animation-2.3/animation/man/least.squares.Rd                         |   99 +-
 animation-2.3/animation/man/lln.ani.Rd                               |   66 -
 animation-2.3/animation/man/moving.block.Rd                          |  119 +-
 animation-2.3/animation/man/mwar.ani.Rd                              |   82 --
 animation-2.3/animation/man/newton.method.Rd                         |   96 +-
 animation-2.3/animation/man/pageview.Rd                              |    6 
 animation-2.3/animation/man/pdftk.Rd                                 |   41 -
 animation-2.3/animation/man/pollen.Rd                                |    8 
 animation-2.3/animation/man/price.ani.Rd                             |   30 
 animation-2.3/animation/man/qpdf.Rd                                  |   34 
 animation-2.3/animation/man/quincunx.Rd                              |  105 +-
 animation-2.3/animation/man/sample.cluster.Rd                        |   38 
 animation-2.3/animation/man/sample.ratio.Rd                          |   60 -
 animation-2.3/animation/man/sample.simple.Rd                         |   38 
 animation-2.3/animation/man/sample.strat.Rd                          |   43 -
 animation-2.3/animation/man/sample.system.Rd                         |   36 
 animation-2.3/animation/man/saveGIF.Rd                               |  158 +--
 animation-2.3/animation/man/saveHTML.Rd                              |  225 ++---
 animation-2.3/animation/man/saveLatex.Rd                             |  242 ++---
 animation-2.3/animation/man/saveSWF.Rd                               |  103 +-
 animation-2.3/animation/man/saveVideo.Rd                             |   84 --
 animation-2.3/animation/man/sim.qqnorm.Rd                            |   46 -
 animation-2.3/animation/man/vanke1127.Rd                             |   10 
 animation-2.3/animation/man/vi.grid.illusion.Rd                      |   39 
 animation-2.3/animation/man/vi.lilac.chaser.Rd                       |   34 
 animation-2.3/animation/tests/run-all.R                              |only
 animation-2.3/animation/tests/testit                                 |only
 151 files changed, 5109 insertions(+), 5788 deletions(-)

More information about animation at CRAN
Permanent link


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