Title: Methods for Analyzing Multiple Response Categorical Variables
(MRCVs)
Diff between MRCV versions 0.3-1 dated 2014-04-10 and 0.3-2 dated 2014-07-25
Description: The MRCV package provides functions for analyzing the association between
one single response categorical variable (SRCV) and one multiple response
categorical variable (MRCV), or between two or three MRCVs. A modified Pearson
chi-square statistic can be used to test for marginal independence for the one or
two MRCV case, or a more general loglinear modeling approach can be used to examine
various other structures of association for the two or three MRCV case. Bootstrap-
and asymptotic-based standardized residuals and model-predicted odds ratios are
available, in addition to other descriptive information.
Author: Natalie Koziol and Chris Bilder
Maintainer: Natalie Koziol
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
NAMESPACE | 2 +-
man/MRCV-package.Rd | 6 +++---
4 files changed, 12 insertions(+), 12 deletions(-)
Title: an R package tailored to the needs of analysing ontologies and
annotations on protein domains
Diff between dcGOR versions 1.0.0 dated 2014-07-02 and 1.0.2 dated 2014-07-25
Description: The 'dcGOR' package is intended to provide the wider bioinformatics community with the use of the dcGO database. The dcGO (http://supfam.org/SUPERFAMILY/dcGO) is a comprehensive domain-centric database for annotating protein domains using a variety of ontologies on functions, phenotypes, diseases and more. With the package, users are expected to easily analyse and visualise domain-centric ontologies and annotations. Supported analyses include but are not limited to: easy access to a wide range of ontologies and their domain-centric annotations; enrichment analysis and visual outputs; semantic similarity between annotated domains from ontology term semantic similarity; random walk with restart upon domain-domain (semantic) networks; and high-performance parallel computing.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang
dcGOR-1.0.0/dcGOR/data/obo.DO.RData |only
dcGOR-1.0.0/dcGOR/data/obo.EC.RData |only
dcGOR-1.0.0/dcGOR/data/obo.GOBP.RData |only
dcGOR-1.0.0/dcGOR/data/obo.GOCC.RData |only
dcGOR-1.0.0/dcGOR/data/obo.GOMF.RData |only
dcGOR-1.0.0/dcGOR/data/obo.HPMI.RData |only
dcGOR-1.0.0/dcGOR/data/obo.HPON.RData |only
dcGOR-1.0.0/dcGOR/data/obo.HPPA.RData |only
dcGOR-1.0.0/dcGOR/data/obo.KW.RData |only
dcGOR-1.0.0/dcGOR/data/obo.MP.RData |only
dcGOR-1.0.0/dcGOR/data/obo.UP.RData |only
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dcGOR-1.0.0/dcGOR/man/obo.EC.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.GOBP.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.GOCC.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.GOMF.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.HPMI.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.HPON.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.HPPA.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.KW.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.MP.Rd |only
dcGOR-1.0.0/dcGOR/man/obo.UP.Rd |only
dcGOR-1.0.2/dcGOR/DESCRIPTION | 17
dcGOR-1.0.2/dcGOR/MD5 | 114 -
dcGOR-1.0.2/dcGOR/NAMESPACE | 27
dcGOR-1.0.2/dcGOR/R/ClassMethod-dcGOR.r | 1352 +++++++++++++++-
dcGOR-1.0.2/dcGOR/R/dcConverter.r |only
dcGOR-1.0.2/dcGOR/R/dcDAGannotate.r | 25
dcGOR-1.0.2/dcGOR/R/dcDAGdomainSim.r | 52
dcGOR-1.0.2/dcGOR/R/dcEnrichment.r | 68
dcGOR-1.0.2/dcGOR/R/dcRDataLoader.r | 11
dcGOR-1.0.2/dcGOR/R/dcRWRpipeline.r | 66
dcGOR-1.0.2/dcGOR/R/visEnrichment.r |only
dcGOR-1.0.2/dcGOR/data/datalist | 22
dcGOR-1.0.2/dcGOR/data/onto.DO.RData |only
dcGOR-1.0.2/dcGOR/data/onto.EC.RData |only
dcGOR-1.0.2/dcGOR/data/onto.GOBP.RData |only
dcGOR-1.0.2/dcGOR/data/onto.GOCC.RData |only
dcGOR-1.0.2/dcGOR/data/onto.GOMF.RData |only
dcGOR-1.0.2/dcGOR/data/onto.HPMI.RData |only
dcGOR-1.0.2/dcGOR/data/onto.HPON.RData |only
dcGOR-1.0.2/dcGOR/data/onto.HPPA.RData |only
dcGOR-1.0.2/dcGOR/data/onto.KW.RData |only
dcGOR-1.0.2/dcGOR/data/onto.MP.RData |only
dcGOR-1.0.2/dcGOR/data/onto.UP.RData |only
dcGOR-1.0.2/dcGOR/inst/NEWS | 26
dcGOR-1.0.2/dcGOR/inst/staticdocs/CITATIONs.md | 2
dcGOR-1.0.2/dcGOR/inst/staticdocs/INSTALLATIONs.md | 12
dcGOR-1.0.2/dcGOR/inst/staticdocs/README.md | 16
dcGOR-1.0.2/dcGOR/inst/staticdocs/demo/Fang.r |only
dcGOR-1.0.2/dcGOR/inst/staticdocs/demo/List_demos.txt | 1
dcGOR-1.0.2/dcGOR/inst/staticdocs/docs.r | 41
dcGOR-1.0.2/dcGOR/inst/staticdocs/templates/navbar.html | 3
dcGOR-1.0.2/dcGOR/man/AdjData-class.Rd |only
dcGOR-1.0.2/dcGOR/man/Anno-class.Rd | 46
dcGOR-1.0.2/dcGOR/man/Anno-method.Rd | 4
dcGOR-1.0.2/dcGOR/man/AnnoData-class.Rd | 9
dcGOR-1.0.2/dcGOR/man/Cnetwork-class.Rd |only
dcGOR-1.0.2/dcGOR/man/Cnetwork-method.Rd |only
dcGOR-1.0.2/dcGOR/man/Coutput-class.Rd |only
dcGOR-1.0.2/dcGOR/man/Coutput-method.Rd |only
dcGOR-1.0.2/dcGOR/man/Dnetwork-class.Rd |only
dcGOR-1.0.2/dcGOR/man/Dnetwork-method.Rd |only
dcGOR-1.0.2/dcGOR/man/Eoutput-class.Rd |only
dcGOR-1.0.2/dcGOR/man/Eoutput-method.Rd |only
dcGOR-1.0.2/dcGOR/man/InfoDataFrame-class.Rd | 37
dcGOR-1.0.2/dcGOR/man/InfoDataFrame-method.Rd | 3
dcGOR-1.0.2/dcGOR/man/Onto-class.Rd |only
dcGOR-1.0.2/dcGOR/man/Onto-method.Rd |only
dcGOR-1.0.2/dcGOR/man/dcConverter.Rd |only
dcGOR-1.0.2/dcGOR/man/dcDAGannotate.Rd | 32
dcGOR-1.0.2/dcGOR/man/dcDAGdomainSim.Rd | 50
dcGOR-1.0.2/dcGOR/man/dcEnrichment.Rd | 120 -
dcGOR-1.0.2/dcGOR/man/dcRDataLoader.Rd | 60
dcGOR-1.0.2/dcGOR/man/dcRWRpipeline.Rd | 28
dcGOR-1.0.2/dcGOR/man/eTOL.Rd | 2
dcGOR-1.0.2/dcGOR/man/onto.DO.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.EC.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.GOBP.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.GOCC.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.GOMF.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.HPMI.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.HPON.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.HPPA.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.KW.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.MP.Rd |only
dcGOR-1.0.2/dcGOR/man/onto.UP.Rd |only
dcGOR-1.0.2/dcGOR/man/visEnrichment.Rd |only
88 files changed, 1845 insertions(+), 401 deletions(-)
Title: Functions and Data Sets for 'Applied Predictive Modeling'
Diff between AppliedPredictiveModeling versions 1.1-5 dated 2014-02-03 and 1.1-6 dated 2014-07-25
More information about AppliedPredictiveModeling at CRAN
Description: A few functions and several data set for the Springer book 'Applied Predictive Modeling'
Author: Max Kuhn, Kjell Johnson
Maintainer: Max Kuhn
DESCRIPTION | 8 +--
MD5 | 8 +--
inst/NEWS.Rd | 8 +++
inst/chapters/CreateGrantData.R | 55 +++++++++++---------
inst/chapters/CreateGrantData.Rout | 97 +++++++++++++++++++++----------------
5 files changed, 101 insertions(+), 75 deletions(-)
Permanent link
Title: Model-based clustering for multivariate partial ranking data
Diff between Rankcluster versions 0.92 dated 2014-02-12 and 0.92.9 dated 2014-07-25
Description: This package proposes a model-based clustering algorithm for
ranking data. Multivariate rankings as well as partial rankings are taken
into account. This algorithm is based on an extension of the Insertion
Sorting Rank (ISR) model for ranking data, which is a meaningful and
effective model parametrized by a position parameter (the modal ranking,
quoted by mu) and a dispersion parameter (quoted by pi). The heterogeneity
of the rank population is modelled by a mixture of ISR, whereas conditional
independence assumption is considered for multivariate rankings.
Author: Quentin Grimonprez, Julien Jacques
Maintainer: Quentin Grimonprez
Rankcluster-0.92.9/Rankcluster/DESCRIPTION | 10
Rankcluster-0.92.9/Rankcluster/MD5 | 82 -
Rankcluster-0.92.9/Rankcluster/NAMESPACE | 2
Rankcluster-0.92.9/Rankcluster/R/Rankcluster-package.R |only
Rankcluster-0.92.9/Rankcluster/R/criteria.R |only
Rankcluster-0.92.9/Rankcluster/R/data.R |only
Rankcluster-0.92.9/Rankcluster/R/mixtureSEM.R | 6
Rankcluster-0.92.9/Rankcluster/R/rankclust.R | 3
Rankcluster-0.92.9/Rankcluster/R/resultClass.R | 24
Rankcluster-0.92.9/Rankcluster/build/vignette.rds |binary
Rankcluster-0.92.9/Rankcluster/inst/doc/Rankcluster.pdf |binary
Rankcluster-0.92.9/Rankcluster/man/APA.Rd | 24
Rankcluster-0.92.9/Rankcluster/man/Output-class.Rd | 113 -
Rankcluster-0.92.9/Rankcluster/man/Rankclust-class.Rd | 29
Rankcluster-0.92.9/Rankcluster/man/Rankcluster-package.Rd | 37
Rankcluster-0.92.9/Rankcluster/man/big4.Rd | 19
Rankcluster-0.92.9/Rankcluster/man/convertRank.Rd | 33
Rankcluster-0.92.9/Rankcluster/man/criteria.Rd | 50
Rankcluster-0.92.9/Rankcluster/man/distCayley.Rd | 7
Rankcluster-0.92.9/Rankcluster/man/distHamming.Rd | 10
Rankcluster-0.92.9/Rankcluster/man/distKendall.Rd | 9
Rankcluster-0.92.9/Rankcluster/man/distSpearman.Rd | 6
Rankcluster-0.92.9/Rankcluster/man/eurovision.Rd | 22
Rankcluster-0.92.9/Rankcluster/man/frequence.Rd | 14
Rankcluster-0.92.9/Rankcluster/man/getter-methods.Rd | 17
Rankcluster-0.92.9/Rankcluster/man/khi2.Rd | 21
Rankcluster-0.92.9/Rankcluster/man/kullback.Rd | 21
Rankcluster-0.92.9/Rankcluster/man/probability.Rd | 51
Rankcluster-0.92.9/Rankcluster/man/quiz.Rd | 35
Rankcluster-0.92.9/Rankcluster/man/rankclust.Rd | 132 -
Rankcluster-0.92.9/Rankcluster/man/show-methods.Rd | 17
Rankcluster-0.92.9/Rankcluster/man/simulISR.Rd | 27
Rankcluster-0.92.9/Rankcluster/man/sports.Rd | 25
Rankcluster-0.92.9/Rankcluster/man/summary-methods.Rd | 10
Rankcluster-0.92.9/Rankcluster/man/unfrequence.Rd | 10
Rankcluster-0.92.9/Rankcluster/man/words.Rd | 19
Rankcluster-0.92.9/Rankcluster/src/Makevars | 2
Rankcluster-0.92.9/Rankcluster/src/Makevars.win | 2
Rankcluster-0.92.9/Rankcluster/src/RankCluster.cpp | 995 +++++++-------
Rankcluster-0.92.9/Rankcluster/src/RankCluster.h | 318 ++--
Rankcluster-0.92.9/Rankcluster/src/run.cpp | 19
Rankcluster-0.92.9/Rankcluster/src/runFunctions.cpp | 67
Rankcluster-0.92.9/Rankcluster/src/runFunctions.h | 2
Rankcluster-0.92/Rankcluster/R/likelihood.R |only
44 files changed, 1115 insertions(+), 1175 deletions(-)
Title: Growth charts via regression quantiles
Diff between quantregGrowth versions 0.1-3 dated 2014-07-02 and 0.3-0 dated 2014-07-25
More information about quantregGrowth at CRAN
Description: Fits non-crossing regression quantiles as a function of linear covariates and a smooth terms via B-splines with quadratic penalties.
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo
quantregGrowth-0.1-3/quantregGrowth/R/ncross.rq.fitB.R |only
quantregGrowth-0.3-0/quantregGrowth/DESCRIPTION | 10
quantregGrowth-0.3-0/quantregGrowth/MD5 | 36 +-
quantregGrowth-0.3-0/quantregGrowth/NAMESPACE | 6
quantregGrowth-0.3-0/quantregGrowth/NEWS | 33 +-
quantregGrowth-0.3-0/quantregGrowth/R/gcrq.R | 83 +++--
quantregGrowth-0.3-0/quantregGrowth/R/gcrq.rq.cv.R | 8
quantregGrowth-0.3-0/quantregGrowth/R/ncross.rq.fitXB.R | 160 ++++++----
quantregGrowth-0.3-0/quantregGrowth/R/plot.gcrq.R | 35 +-
quantregGrowth-0.3-0/quantregGrowth/R/print.gcrq.R | 23 +
quantregGrowth-0.3-0/quantregGrowth/R/ps.R | 1
quantregGrowth-0.3-0/quantregGrowth/R/summary.gcrq.R | 40 +-
quantregGrowth-0.3-0/quantregGrowth/R/vcov.r |only
quantregGrowth-0.3-0/quantregGrowth/man/gcrq.Rd | 47 ++
quantregGrowth-0.3-0/quantregGrowth/man/ncross.rq.fitXB.Rd | 10
quantregGrowth-0.3-0/quantregGrowth/man/plot.gcrq.Rd | 12
quantregGrowth-0.3-0/quantregGrowth/man/print.gcrq.Rd |only
quantregGrowth-0.3-0/quantregGrowth/man/ps.Rd | 2
quantregGrowth-0.3-0/quantregGrowth/man/quantregGrowth-package.Rd | 6
quantregGrowth-0.3-0/quantregGrowth/man/summary.gcrq.Rd | 5
quantregGrowth-0.3-0/quantregGrowth/man/vcov.gcrq.Rd |only
21 files changed, 348 insertions(+), 169 deletions(-)
Permanent link
Title: Markov-Switching, Bayesian, Vector Autoregression Models
Diff between MSBVAR versions 0.9-0 dated 2014-06-02 and 0.9-1 dated 2014-07-25
Description: Provides methods for estimating frequentist and
Bayesian Vector Autoregression (VAR) models and Markov-switching
Bayesian VAR (MSBVAR). Functions for reduced
form and structural VAR models are also available. Includes
methods for the generating posterior inferences for these models,
forecasts, impulse responses (using likelihood-based error bands),
and forecast error decompositions. Also includes utility functions
for plotting forecasts and impulse responses, and generating draws
from Wishart and singular multivariate normal densities. Current
version includes functionality to build and evaluate models with
Markov switching.
Author: Patrick Brandt [aut, cre],
W. Ryan Davis [cre]
Maintainer: Patrick Brandt
MSBVAR-0.9-0/MSBVAR/INDEX |only
MSBVAR-0.9-1/MSBVAR/DESCRIPTION | 12
MSBVAR-0.9-1/MSBVAR/MD5 | 37 +-
MSBVAR-0.9-1/MSBVAR/NAMESPACE | 5
MSBVAR-0.9-1/MSBVAR/R/SS.R | 8
MSBVAR-0.9-1/MSBVAR/R/gibbs.A0.R | 5
MSBVAR-0.9-1/MSBVAR/R/gibbs.msbvar.R | 5
MSBVAR-0.9-1/MSBVAR/R/hidden.R | 30 +
MSBVAR-0.9-1/MSBVAR/R/mc.irf.R | 494 +++++++++++++++++++++----------
MSBVAR-0.9-1/MSBVAR/R/msbvar.R | 6
MSBVAR-0.9-1/MSBVAR/R/plot.ms.irf.R |only
MSBVAR-0.9-1/MSBVAR/R/plotregimeid.R | 22 +
MSBVAR-0.9-1/MSBVAR/R/regimeSummary.R |only
MSBVAR-0.9-1/MSBVAR/R/szbsvar.R | 58 ++-
MSBVAR-0.9-1/MSBVAR/R/zzz.R | 28 -
MSBVAR-0.9-1/MSBVAR/README | 48 ++-
MSBVAR-0.9-1/MSBVAR/man/forecast.Rd | 36 +-
MSBVAR-0.9-1/MSBVAR/man/mc.irf.Rd | 46 +-
MSBVAR-0.9-1/MSBVAR/man/plot.mc.irf.Rd | 21 -
MSBVAR-0.9-1/MSBVAR/man/plot.ms.irf.Rd |only
MSBVAR-0.9-1/MSBVAR/man/regimeSummary.Rd |only
MSBVAR-0.9-1/MSBVAR/man/szbsvar.Rd | 24 -
22 files changed, 619 insertions(+), 266 deletions(-)
Title: toolbox for WELL random number generators.
Diff between rngWELL versions 0.10-2 dated 2013-06-11 and 0.10-3 dated 2014-07-25
Description: It is a dedicated package to WELL pseudo random generators, which were introduced in Panneton et al. (2006), ``Improved Long-Period Generators Based on Linear Recurrences Modulo 2'', ACM Transactions on Mathematical Software. But this package is not intended to be used directly, you are strongly __encouraged__ to use the 'randtoolbox' package, which depends on this package.
Author: all C code by F. Panneton, P. L'Ecuyer and M. Matsumoto and R port by Christophe Dutang and Petr Savicky
Maintainer: Christophe Dutang
rngWELL-0.10-2/rngWELL/ax_ext.m4 |only
rngWELL-0.10-3/rngWELL/DESCRIPTION | 20 ++++---------
rngWELL-0.10-3/rngWELL/LICENSE | 34 ++--------------------
rngWELL-0.10-3/rngWELL/MD5 | 14 ++++-----
rngWELL-0.10-3/rngWELL/inst/CITATION | 18 ++++--------
rngWELL-0.10-3/rngWELL/inst/NEWS | 13 ++++++++
rngWELL-0.10-3/rngWELL/src/config.h | 52 ++++++++++++++++-------------------
rngWELL-0.10-3/rngWELL/src/version.c | 2 -
rngWELL-0.10-3/rngWELL/tools |only
9 files changed, 61 insertions(+), 92 deletions(-)
Title: Clustering of variables around Latent Variables
Diff between ClustVarLV versions 1.2 dated 2014-04-04 and 1.3 dated 2014-07-25
Description: This package provides a set of functions that allows us to cluster
a set of variables around Latent Variables. Each group is associated with a
latent variable. External variables measured on the same observations
or/and additional information on the variables can be taken into account.
Author: Evelyne Vigneau, Mingkun Chen
Maintainer: Evelyne Vigneau
DESCRIPTION | 16 +--
MD5 | 39 +++++----
R/CLV.R | 21 ++--
R/CLV_kmeans.R | 208 +++++++------------------------------------------
R/LCLV.R | 4
R/clvk_kp1.R |only
R/clvk_none.R |only
R/clvk_sparse.R |only
R/consol_affect.R | 22 +----
R/consol_affect_k.R |only
R/consol_calcul_s.R |only
R/descrip_gp.R | 50 +++++++++--
R/gpmb_on_pc.R | 17 +++-
R/print.clvkmeans.r | 8 +
data/AUPA_psycho.rda |only
man/AUPA_psycho.Rd |only
man/CLV.Rd | 76 ++++++++---------
man/CLV_kmeans.Rd | 48 +++++------
man/LCLV.Rd | 89 ++++++++++----------
man/descrip_gp.Rd | 8 -
man/gpmb_on_pc.Rd | 10 +-
man/print.clv.Rd | 4
man/print.clvkmeans.Rd | 4
man/print.lclv.Rd | 4
24 files changed, 265 insertions(+), 363 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-30 0.70
2013-04-29 0.67
2013-04-19 0.66
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-10 0.6.3
Title: Simulating Phylogenetic Trees under a General Model
Diff between TreeSimGM versions 1.1 dated 2013-02-21 and 1.2 dated 2014-07-25
Description: The package is a flexible simulation tool for phylogenetic trees under a general model. It is possible to assume any probability distribution for the waiting time until speciation and extinction independently. Thus, TreeSimGM allows to simulate stochastic phylogenetic trees using any probability distribution and parameters for speciation and extinction. The speciation modes have all binary splits and are: (i) symmetric, where for every speciation event new waiting times until speciation and extinction are drawn for both daughter lineages; and (ii) asymmetric, where a speciation event results in one species with new waiting times, and another that carries the extinction time and age of its ancestor. Those two modes were inspired by allopatric and peripatric speciation respectively.Both models (symmetric and asymmetric) were created and implemented so that different processes (distributions) for speciation and extinction could be independently and explicitly specified. It is also possible to have an implicit extinction process by setting the extinction rate to zero.
Author: Oskar Hagen, Tanja Stadler
Maintainer: Oskar Hagen
DESCRIPTION | 30 +------
MD5 | 10 +-
R/sim.taxa.R | 131 ++++++++++++++++----------------
man/TreeSimGM-package.Rd | 98 ++++++++++++------------
man/sim.age.Rd | 123 +++++++++++++++---------------
man/sim.taxa.Rd | 187 +++++++++++++++++++++++------------------------
6 files changed, 283 insertions(+), 296 deletions(-)
Title: Simulation and Analysis of Random Fields
Diff between RandomFields versions 3.0.10 dated 2014-01-21 and 3.0.30 dated 2014-07-25
Description: Simulation of Gaussian and extreme value random fields;
conditional simulation; kriging; maximum likelihood estimation
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Peter Menck [aut], Sebastian Gross [aut], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather
RandomFields-3.0.10/RandomFields/R/Methods-Others.R |only
RandomFields-3.0.10/RandomFields/R/plot.R |only
RandomFields-3.0.10/RandomFields/man/RFmodel-class.Rd |only
RandomFields-3.0.10/RandomFields/man/RFmodelExt-class.Rd |only
RandomFields-3.0.10/RandomFields/man/ROeaxxa.Rd |only
RandomFields-3.0.10/RandomFields/man/ROrational.Rd |only
RandomFields-3.0.10/RandomFields/man/ROrotat.Rd |only
RandomFields-3.0.10/RandomFields/man/papers.jss13.Rd |only
RandomFields-3.0.10/RandomFields/src/duene.cc |only
RandomFields-3.0.10/RandomFields/src/markov.cc |only
RandomFields-3.0.10/RandomFields/src/old.duenen.cc |only
RandomFields-3.0.10/RandomFields/src/thuy.cc |only
RandomFields-3.0.30/RandomFields/DESCRIPTION | 13
RandomFields-3.0.30/RandomFields/MD5 | 478 -
RandomFields-3.0.30/RandomFields/NAMESPACE | 65
RandomFields-3.0.30/RandomFields/R/Class.R | 62
RandomFields-3.0.30/RandomFields/R/Crossvalidation.R |only
RandomFields-3.0.30/RandomFields/R/D.H.R | 17
RandomFields-3.0.30/RandomFields/R/Likelihoodratio.R |only
RandomFields-3.0.30/RandomFields/R/Methods-RFestimation.R | 1288 +++-
RandomFields-3.0.30/RandomFields/R/Methods-RFmodel.R | 168
RandomFields-3.0.30/RandomFields/R/Methods-RFsp.R | 435 -
RandomFields-3.0.30/RandomFields/R/RF_GLOBALS.R | 62
RandomFields-3.0.30/RandomFields/R/RFfit.R | 8
RandomFields-3.0.30/RandomFields/R/RFgui.R | 107
RandomFields-3.0.30/RandomFields/R/RFsp-plots.R | 239
RandomFields-3.0.30/RandomFields/R/RMConvenienceModels.R | 16
RandomFields-3.0.30/RandomFields/R/RMmodels.R | 647 +-
RandomFields-3.0.30/RandomFields/R/SpecialRMmodel.R | 86
RandomFields-3.0.30/RandomFields/R/auxiliary.R | 47
RandomFields-3.0.30/RandomFields/R/convert.R | 140
RandomFields-3.0.30/RandomFields/R/convert_new.R | 21
RandomFields-3.0.30/RandomFields/R/datasets.R |only
RandomFields-3.0.30/RandomFields/R/empvario.R | 1100 +--
RandomFields-3.0.30/RandomFields/R/fitgauss.R | 1512 +++--
RandomFields-3.0.30/RandomFields/R/generatemodels.R | 23
RandomFields-3.0.30/RandomFields/R/getNset.R | 98
RandomFields-3.0.30/RandomFields/R/internal_use.R | 196
RandomFields-3.0.30/RandomFields/R/kriging.R | 660 +-
RandomFields-3.0.30/RandomFields/R/nicht.nachladbar.R |only
RandomFields-3.0.30/RandomFields/R/obsolete.R | 44
RandomFields-3.0.30/RandomFields/R/rf.R | 290 -
RandomFields-3.0.30/RandomFields/data/weather.rda |binary
RandomFields-3.0.30/RandomFields/man/BRspecific.Rd | 22
RandomFields-3.0.30/RandomFields/man/Baysian.Rd | 5
RandomFields-3.0.30/RandomFields/man/Circulant.Rd | 17
RandomFields-3.0.30/RandomFields/man/Coin.Rd | 15
RandomFields-3.0.30/RandomFields/man/Constants.Rd | 51
RandomFields-3.0.30/RandomFields/man/Gaussian.Rd | 7
RandomFields-3.0.30/RandomFields/man/Hyperplane.Rd | 17
RandomFields-3.0.30/RandomFields/man/MajorRevisions.Rd |only
RandomFields-3.0.30/RandomFields/man/Maxstable.Rd | 11
RandomFields-3.0.30/RandomFields/man/Nugget.Rd | 12
RandomFields-3.0.30/RandomFields/man/Print.Rd | 7
RandomFields-3.0.30/RandomFields/man/PrintModelList.Rd | 10
RandomFields-3.0.30/RandomFields/man/RF.Rd | 34
RandomFields-3.0.30/RandomFields/man/RFcov.Rd | 9
RandomFields-3.0.30/RandomFields/man/RFcrossvalidate.Rd |only
RandomFields-3.0.30/RandomFields/man/RFdistr.Rd | 14
RandomFields-3.0.30/RandomFields/man/RFempVariog-class.Rd | 58
RandomFields-3.0.30/RandomFields/man/RFempiricalvariogram.Rd | 69
RandomFields-3.0.30/RandomFields/man/RFfit-class.Rd | 218
RandomFields-3.0.30/RandomFields/man/RFfit.Rd | 30
RandomFields-3.0.30/RandomFields/man/RFformula.Rd | 11
RandomFields-3.0.30/RandomFields/man/RFfractaldim.Rd | 27
RandomFields-3.0.30/RandomFields/man/RFgetMethodNames.Rd | 13
RandomFields-3.0.30/RandomFields/man/RFgetModelInfo.Rd | 7
RandomFields-3.0.30/RandomFields/man/RFgetModelNames.Rd | 91
RandomFields-3.0.30/RandomFields/man/RFgridDataFrame-class.Rd | 26
RandomFields-3.0.30/RandomFields/man/RFgui.Rd | 13
RandomFields-3.0.30/RandomFields/man/RFhurst.Rd | 9
RandomFields-3.0.30/RandomFields/man/RFinterpolate.Rd | 48
RandomFields-3.0.30/RandomFields/man/RFoldstyle.Rd | 12
RandomFields-3.0.30/RandomFields/man/RFoptions.Rd | 2795 +++++-----
RandomFields-3.0.30/RandomFields/man/RFpointsDataFrame-class.Rd | 7
RandomFields-3.0.30/RandomFields/man/RFratiotest.Rd | 88
RandomFields-3.0.30/RandomFields/man/RFsimulate.Rd | 18
RandomFields-3.0.30/RandomFields/man/RFsimulate.more.examples.Rd | 293 -
RandomFields-3.0.30/RandomFields/man/RFsimulate.sophisticated.examples.Rd | 196
RandomFields-3.0.30/RandomFields/man/RFsimulateAdvanced.Rd | 53
RandomFields-3.0.30/RandomFields/man/RFsp-class.Rd | 44
RandomFields-3.0.30/RandomFields/man/RFsp2conventional.Rd | 5
RandomFields-3.0.30/RandomFields/man/RFspatialGridDataFrame-class.Rd | 18
RandomFields-3.0.30/RandomFields/man/RFspatialPointsDataFrame-class.Rd | 39
RandomFields-3.0.30/RandomFields/man/RMS.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMangle.Rd | 16
RandomFields-3.0.30/RandomFields/man/RMaskey.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMave.Rd | 29
RandomFields-3.0.30/RandomFields/man/RMball.Rd | 16
RandomFields-3.0.30/RandomFields/man/RMbcw.Rd |only
RandomFields-3.0.30/RandomFields/man/RMbernoulli.Rd | 12
RandomFields-3.0.30/RandomFields/man/RMbessel.Rd | 28
RandomFields-3.0.30/RandomFields/man/RMbigneiting.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMbiwm.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMbr2.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMbrownresnick.Rd | 22
RandomFields-3.0.30/RandomFields/man/RMcauchy.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMcauchytbm.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMcircular.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMconstant.Rd | 4
RandomFields-3.0.30/RandomFields/man/RMcoord.Rd | 2
RandomFields-3.0.30/RandomFields/man/RMcoxisham.Rd | 14
RandomFields-3.0.30/RandomFields/man/RMcubic.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMcurlfree.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMcutoff.Rd | 6
RandomFields-3.0.30/RandomFields/man/RMdagum.Rd | 13
RandomFields-3.0.30/RandomFields/man/RMdampedcos.Rd | 13
RandomFields-3.0.30/RandomFields/man/RMdelay.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMdewijsian.Rd | 34
RandomFields-3.0.30/RandomFields/man/RMdivfree.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMeaxxa.Rd |only
RandomFields-3.0.30/RandomFields/man/RMepscauchy.Rd | 12
RandomFields-3.0.30/RandomFields/man/RMexp.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMexponential.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMfbm.Rd | 15
RandomFields-3.0.30/RandomFields/man/RMfixed.Rd | 2
RandomFields-3.0.30/RandomFields/man/RMfractdiff.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMfractgauss.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMgauss.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMgencauchy.Rd | 13
RandomFields-3.0.30/RandomFields/man/RMgenfbm.Rd | 39
RandomFields-3.0.30/RandomFields/man/RMgengneiting.Rd | 17
RandomFields-3.0.30/RandomFields/man/RMgneiting.Rd | 11
RandomFields-3.0.30/RandomFields/man/RMgneitingdiff.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMhyperbolic.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMiaco.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMid.Rd | 10
RandomFields-3.0.30/RandomFields/man/RMintern.Rd | 73
RandomFields-3.0.30/RandomFields/man/RMintexp.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMintrinsic.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMkolmogorov.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMlgd.Rd | 15
RandomFields-3.0.30/RandomFields/man/RMma.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMmastein.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMmatern.Rd | 18
RandomFields-3.0.30/RandomFields/man/RMmatrix.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMmodel-class.Rd |only
RandomFields-3.0.30/RandomFields/man/RMmodel.Rd | 53
RandomFields-3.0.30/RandomFields/man/RMmodelExt-class.Rd |only
RandomFields-3.0.30/RandomFields/man/RMmodelgenerator-class.Rd | 64
RandomFields-3.0.30/RandomFields/man/RMmodelsAdvanced.Rd | 80
RandomFields-3.0.30/RandomFields/man/RMmodelsAuxiliary.Rd | 79
RandomFields-3.0.30/RandomFields/man/RMmppplus.Rd | 14
RandomFields-3.0.30/RandomFields/man/RMmqam.Rd | 12
RandomFields-3.0.30/RandomFields/man/RMmult.Rd | 24
RandomFields-3.0.30/RandomFields/man/RMnatsc.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMnonstwm.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMnsst.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMnugget.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMoesting.Rd |only
RandomFields-3.0.30/RandomFields/man/RMparswm.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMpenta.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMplus.Rd | 11
RandomFields-3.0.30/RandomFields/man/RMpoissonpoly.Rd | 17
RandomFields-3.0.30/RandomFields/man/RMpower.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMqam.Rd | 13
RandomFields-3.0.30/RandomFields/man/RMqexp.Rd | 10
RandomFields-3.0.30/RandomFields/man/RMrational.Rd |only
RandomFields-3.0.30/RandomFields/man/RMrotat.Rd |only
RandomFields-3.0.30/RandomFields/man/RMschlather.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMschur.Rd | 4
RandomFields-3.0.30/RandomFields/man/RMsign.Rd | 18
RandomFields-3.0.30/RandomFields/man/RMspheric.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMstable.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMstein.Rd | 7
RandomFields-3.0.30/RandomFields/man/RMstp.Rd | 81
RandomFields-3.0.30/RandomFields/man/RMstrokorb.Rd | 52
RandomFields-3.0.30/RandomFields/man/RMtbm.Rd | 11
RandomFields-3.0.30/RandomFields/man/RMtrafo.Rd | 16
RandomFields-3.0.30/RandomFields/man/RMtrend.Rd | 13
RandomFields-3.0.30/RandomFields/man/RMtruncsupport.Rd | 5
RandomFields-3.0.30/RandomFields/man/RMuser.Rd | 89
RandomFields-3.0.30/RandomFields/man/RMvector.Rd | 9
RandomFields-3.0.30/RandomFields/man/RMwave.Rd | 7
RandomFields-3.0.30/RandomFields/man/RP.Rd | 44
RandomFields-3.0.30/RandomFields/man/RPbernoulli.Rd | 26
RandomFields-3.0.30/RandomFields/man/RPbrownresnick.Rd | 15
RandomFields-3.0.30/RandomFields/man/RPchi2.Rd | 7
RandomFields-3.0.30/RandomFields/man/RPgauss.Rd | 20
RandomFields-3.0.30/RandomFields/man/RPmaxstableAdvanced.Rd | 7
RandomFields-3.0.30/RandomFields/man/RPpoisson.Rd | 9
RandomFields-3.0.30/RandomFields/man/RPschlather.Rd | 39
RandomFields-3.0.30/RandomFields/man/RPsmith.Rd | 50
RandomFields-3.0.30/RandomFields/man/RR.Rd | 42
RandomFields-3.0.30/RandomFields/man/RRdeterm.Rd | 12
RandomFields-3.0.30/RandomFields/man/RRdistr.Rd | 9
RandomFields-3.0.30/RandomFields/man/RRgauss.Rd | 11
RandomFields-3.0.30/RandomFields/man/RRloc.Rd | 14
RandomFields-3.0.30/RandomFields/man/RRrectangular.Rd | 7
RandomFields-3.0.30/RandomFields/man/RRspherical.Rd | 27
RandomFields-3.0.30/RandomFields/man/RRunif.Rd | 23
RandomFields-3.0.30/RandomFields/man/RandomFields.Rd | 396 -
RandomFields-3.0.30/RandomFields/man/Sequential.Rd | 13
RandomFields-3.0.30/RandomFields/man/Specific.Rd | 33
RandomFields-3.0.30/RandomFields/man/Spectral.Rd | 19
RandomFields-3.0.30/RandomFields/man/Tbm.Rd | 25
RandomFields-3.0.30/RandomFields/man/conventional2RFspDataFrame.Rd | 15
RandomFields-3.0.30/RandomFields/man/fitgauss.Rd | 35
RandomFields-3.0.30/RandomFields/man/internal.Rd | 35
RandomFields-3.0.30/RandomFields/man/obsolete.Rd | 12
RandomFields-3.0.30/RandomFields/man/papers.GSPSJ06.Rd | 18
RandomFields-3.0.30/RandomFields/man/papers.Rd | 17
RandomFields-3.0.30/RandomFields/man/papers.S02.Rd | 52
RandomFields-3.0.30/RandomFields/man/papers.S10.Rd | 106
RandomFields-3.0.30/RandomFields/man/papers.SBS14.Rd | 99
RandomFields-3.0.30/RandomFields/man/papers.SS11.Rd | 13
RandomFields-3.0.30/RandomFields/man/papers.jss14.Rd |only
RandomFields-3.0.30/RandomFields/man/plot-method.Rd | 75
RandomFields-3.0.30/RandomFields/man/soil.Rd | 41
RandomFields-3.0.30/RandomFields/man/weather.Rd | 175
RandomFields-3.0.30/RandomFields/src/Brown.cc | 1477 +++--
RandomFields-3.0.30/RandomFields/src/Covariance.h | 42
RandomFields-3.0.30/RandomFields/src/D.H.cc | 4
RandomFields-3.0.30/RandomFields/src/Families.cc | 648 +-
RandomFields-3.0.30/RandomFields/src/Gneiting.cc | 62
RandomFields-3.0.30/RandomFields/src/Huetchen.cc | 726 +-
RandomFields-3.0.30/RandomFields/src/InternalCov.cc | 553 +
RandomFields-3.0.30/RandomFields/src/KeyInfo.cc | 245
RandomFields-3.0.30/RandomFields/src/MLE.cc | 94
RandomFields-3.0.30/RandomFields/src/PoissonPolygon.cc | 133
RandomFields-3.0.30/RandomFields/src/PoissonPolygon.h | 1
RandomFields-3.0.30/RandomFields/src/Primitive.cc | 907 ++-
RandomFields-3.0.30/RandomFields/src/RF.h | 545 +
RandomFields-3.0.30/RandomFields/src/RandomFields.h | 13
RandomFields-3.0.30/RandomFields/src/Specific.cc | 60
RandomFields-3.0.30/RandomFields/src/Xempvario.cc | 14
RandomFields-3.0.30/RandomFields/src/auxiliary.cc | 103
RandomFields-3.0.30/RandomFields/src/basic.h | 8
RandomFields-3.0.30/RandomFields/src/circulant.cc | 127
RandomFields-3.0.30/RandomFields/src/direct.cc | 111
RandomFields-3.0.30/RandomFields/src/empvario.cc | 581 +-
RandomFields-3.0.30/RandomFields/src/error.h | 5
RandomFields-3.0.30/RandomFields/src/extremes.cc | 910 ++-
RandomFields-3.0.30/RandomFields/src/families.h | 21
RandomFields-3.0.30/RandomFields/src/fftVario.cc | 466 -
RandomFields-3.0.30/RandomFields/src/gauss.cc | 470 +
RandomFields-3.0.30/RandomFields/src/getNset.cc | 464 +
RandomFields-3.0.30/RandomFields/src/hyperplan.cc | 21
RandomFields-3.0.30/RandomFields/src/initNerror.cc | 491 +
RandomFields-3.0.30/RandomFields/src/kriging.cc | 4
RandomFields-3.0.30/RandomFields/src/nugget.cc | 43
RandomFields-3.0.30/RandomFields/src/operator.cc | 699 +-
RandomFields-3.0.30/RandomFields/src/plusmalS.cc | 1684 ++++--
RandomFields-3.0.30/RandomFields/src/primitive.h | 17
RandomFields-3.0.30/RandomFields/src/randomshape.h | 30
RandomFields-3.0.30/RandomFields/src/sequential.cc | 21
RandomFields-3.0.30/RandomFields/src/simu.cc | 535 +
RandomFields-3.0.30/RandomFields/src/spectral.cc | 44
RandomFields-3.0.30/RandomFields/src/startGetNset.cc | 281 -
RandomFields-3.0.30/RandomFields/src/tbm.cc | 264
RandomFields-3.0.30/RandomFields/src/trend.cc | 119
RandomFields-3.0.30/RandomFields/src/userinterfaces.cc | 496 +
RandomFields-3.0.30/RandomFields/src/variogramAndCo.cc | 85
253 files changed, 17805 insertions(+), 11008 deletions(-)
Title: Map filenames to MIME types
Diff between mime versions 0.1.1 dated 2014-05-12 and 0.1.2 dated 2014-07-25
Description: This package guesses the MIME type from a filename extension using
the data derived from /etc/mime.types in UNIX-type systems.
Author: Yihui Xie
Maintainer: Yihui Xie
DESCRIPTION | 8 ++++----
MD5 | 9 +++++----
NEWS | 7 +++++++
R/mime.R | 5 +++--
R/mimemap.R | 2 +-
tests |only
6 files changed, 20 insertions(+), 11 deletions(-)
Title: Markdown rendering for R
Diff between markdown versions 0.7 dated 2014-05-12 and 0.7.2 dated 2014-07-25
Description: Markdown is a plain-text formatting syntax that can be
converted to XHTML or other formats. This package provides R bindings
to the Sundown markdown rendering library.
Author: JJ Allaire, Jeffrey Horner, Vicent Marti, and Natacha Porte
Maintainer: Yihui Xie
DESCRIPTION | 8 +-
MD5 | 20 ++---
NEWS | 10 ++
R/renderMarkdown.R | 26 +++----
build/vignette.rds |binary
inst/doc/markdown-examples.R | 120 ++++++++++++++++++++++++++++++++++-
inst/doc/markdown-examples.html | 3
inst/doc/markdown-output.R | 137 +++++++++++++++++++++++++++++++++++++++-
inst/doc/markdown-output.html | 3
man/markdownToHTML.Rd | 4 -
tests/tests.Rout.save | 2
11 files changed, 293 insertions(+), 40 deletions(-)
Title: Interpret Tree Ensembles
Diff between inTrees versions 1.0 dated 2014-07-14 and 1.1 dated 2014-07-25
Description: For tree ensembles such as random forests, regularized random forests and gradient boosted trees, this package provides functions for: extracting, measuring and pruning rules; selecting a compact rule set; summarizing rules into a learner; calculating frequent variable interactions; formatting rules in latex code.
Author: Houtao Deng
Maintainer: Houtao Deng
DESCRIPTION | 11 --
MD5 | 68 ++++++-------
NAMESPACE | 3
NEWS | 8 +
R/GBM2List.R | 26 ++--
R/Num2Level.R | 17 +--
R/RF2List.R | 17 +--
R/applyLearner.R | 30 ++---
R/buildLearner.R | 118 ++++++++++------------
R/computeRuleInfor.R | 9 -
R/dataSimulate.R | 80 ++++++++-------
R/dicretizeVector.R | 33 ++----
R/extractRules.R | 54 ++++------
R/formatGBM.R | 44 +++-----
R/getFreqPattern.R | 80 ++++++++-------
R/getRuleMetric.R | 32 +++---
R/getTypeX.R | 18 +--
R/inTrees-internal.R | 251 +++++++++++++++++++++++-------------------------
R/lookupRule.R | 21 +---
R/measureRule.R | 64 ++++++------
R/presentRules.R | 46 +++-----
R/pruneRule.R | 14 +-
R/pruneSingleRule.R | 50 +++++----
R/rule2Table.R | 16 +--
R/ruleList2Exec.R | 14 +-
R/selectRuleRRF.R | 30 ++---
R/singleRuleList2Exec.R | 36 +++---
R/sortRule.R | 11 +-
R/treeVisit.R | 130 ++++++++++++------------
R/voteAllRules.R |only
man/buildLearner.Rd | 19 +--
man/dataSimulate.Rd | 45 +++-----
man/measureRule.Rd | 5
man/pruneRule.Rd | 28 ++---
man/pruneSingleRule.Rd | 20 ++-
man/voteAllRules.Rd |only
36 files changed, 714 insertions(+), 734 deletions(-)
Title: A gallery of animations in statistics and utilities to create
animations
Diff between animation versions 2.2 dated 2013-04-14 and 2.3 dated 2014-07-25
Description: This package contains a variety of functions for animations in
statistics, covering areas such as probability theory, mathematical
statistics, multivariate statistics, nonparametric statistics, sampling
survey, linear models, time series, computational statistics, data mining
and machine learning. These functions might be helpful in teaching
statistics and data analysis. Also provided in this package are several
approaches to save animations to various formats, e.g. Flash, GIF, HTML
pages, PDF and videos (saveSWF(), saveGIF(), saveHTML(), saveLatex(), and
saveVideo() respectively). PDF animations can be inserted into Sweave/knitr
easily.
Author: Lijia Yu [ctb],
Weicheng Zhu [ctb],
Yihui Xie [cre, aut]
Maintainer: Yihui Xie
animation-2.2/animation/R/ani.stop.R |only
animation-2.2/animation/R/animation-defunct.R |only
animation-2.2/animation/inst/misc/scianimator/css/shCore.css |only
animation-2.2/animation/inst/misc/scianimator/css/shThemeDefault.css |only
animation-2.2/animation/inst/misc/scianimator/js/shAutoloader.js |only
animation-2.2/animation/inst/misc/scianimator/js/shBrushR.js |only
animation-2.2/animation/inst/misc/scianimator/js/shCore.js |only
animation-2.2/animation/man/ani.stop.Rd |only
animation-2.2/animation/man/animation-defunct.Rd |only
animation-2.2/animation/readme.md |only
animation-2.2/animation/tests/flash-animation.r |only
animation-2.2/animation/tests/gif-animation.r |only
animation-2.2/animation/tests/html-animation.r |only
animation-2.3/animation/DESCRIPTION | 54 -
animation-2.3/animation/MD5 | 282 +++---
animation-2.3/animation/NAMESPACE | 52 +
animation-2.3/animation/NEWS | 35
animation-2.3/animation/R/BM.circle.R | 48 -
animation-2.3/animation/R/MC.hitormiss.R | 91 +-
animation-2.3/animation/R/MC.samplemean.R | 100 +-
animation-2.3/animation/R/Rosling.bubbles.R | 32
animation-2.3/animation/R/ani.options.R | 409 ++++------
animation-2.3/animation/R/ani.pause.R | 27
animation-2.3/animation/R/ani.record.R | 133 +--
animation-2.3/animation/R/ani.start.R | 59 -
animation-2.3/animation/R/animation-package.R | 39
animation-2.3/animation/R/bisection.method.R | 151 +--
animation-2.3/animation/R/boot.iid.R | 126 +--
animation-2.3/animation/R/boot.lowess.R | 55 -
animation-2.3/animation/R/brownian.motion.R | 50 -
animation-2.3/animation/R/buffon.needle.R | 11
animation-2.3/animation/R/clt.ani.R | 128 +--
animation-2.3/animation/R/conf.int.R | 40
animation-2.3/animation/R/cv.ani.R | 69 -
animation-2.3/animation/R/cv.nfeaturesLDA.R | 190 ++--
animation-2.3/animation/R/ecol.death.sim.R | 92 +-
animation-2.3/animation/R/flip.coin.R | 151 +--
animation-2.3/animation/R/g.brownian.motion.R | 123 +--
animation-2.3/animation/R/grad.desc.R | 49 -
animation-2.3/animation/R/im.convert.R | 302 +++----
animation-2.3/animation/R/kfcv.R | 33
animation-2.3/animation/R/kmeans.ani.R | 155 +--
animation-2.3/animation/R/knn.ani.R | 274 +++---
animation-2.3/animation/R/least.squares.R | 180 ++--
animation-2.3/animation/R/lln.ani.R | 93 +-
animation-2.3/animation/R/moving.block.R | 95 +-
animation-2.3/animation/R/mwar.ani.R | 139 +--
animation-2.3/animation/R/newton.method.R | 152 +--
animation-2.3/animation/R/pdftk.R | 66 -
animation-2.3/animation/R/price.ani.R | 89 +-
animation-2.3/animation/R/qpdf.R | 55 -
animation-2.3/animation/R/quincunx.R | 127 +--
animation-2.3/animation/R/quincunx2.R |only
animation-2.3/animation/R/sample.cluster.R | 27
animation-2.3/animation/R/sample.ratio.R | 35
animation-2.3/animation/R/sample.simple.R | 25
animation-2.3/animation/R/sample.strat.R | 26
animation-2.3/animation/R/sample.system.R | 22
animation-2.3/animation/R/saveGIF.R | 56 -
animation-2.3/animation/R/saveHTML.R | 144 ++-
animation-2.3/animation/R/saveLatex.R | 159 +--
animation-2.3/animation/R/saveSWF.R | 102 +-
animation-2.3/animation/R/saveVideo.R | 65 -
animation-2.3/animation/R/sim.qqnorm.R | 10
animation-2.3/animation/R/utils.R |only
animation-2.3/animation/R/vi.grid.illusion.R | 21
animation-2.3/animation/R/vi.lilac.chaser.R | 14
animation-2.3/animation/R/zzz.R | 8
animation-2.3/animation/README.md |only
animation-2.3/animation/demo/CLEvsLAL.R | 117 +-
animation-2.3/animation/demo/IBM.R | 54 -
animation-2.3/animation/demo/Mandelbrot.R | 42 -
animation-2.3/animation/demo/Sierpinski.R | 48 -
animation-2.3/animation/demo/Sweave_animation.R | 14
animation-2.3/animation/demo/Xmas.R | 30
animation-2.3/animation/demo/Xmas2.R | 40
animation-2.3/animation/demo/Xmas_card.R | 38
animation-2.3/animation/demo/busybees.R | 64 -
animation-2.3/animation/demo/elephant.R | 62 -
animation-2.3/animation/demo/fire.R | 66 -
animation-2.3/animation/demo/fireworks.R | 157 ++-
animation-2.3/animation/demo/flowers.R | 16
animation-2.3/animation/demo/game_of_life.R | 125 +--
animation-2.3/animation/demo/ggobi_animation.R | 28
animation-2.3/animation/demo/hanoi.R | 64 -
animation-2.3/animation/demo/jumpingHorse.R | 76 -
animation-2.3/animation/demo/pollen.R | 33
animation-2.3/animation/demo/recur.leaf.R | 40
animation-2.3/animation/demo/recur.snow.R | 68 -
animation-2.3/animation/demo/recur.tree.R | 119 +-
animation-2.3/animation/demo/rgl_animation.R | 55 -
animation-2.3/animation/demo/use_Cairo.R | 28
animation-2.3/animation/demo/wordrotation.R | 8
animation-2.3/animation/inst/misc/scianimator/index.html | 15
animation-2.3/animation/man/BM.circle.Rd | 38
animation-2.3/animation/man/CLELAL09.Rd | 35
animation-2.3/animation/man/HuSpeech.Rd | 13
animation-2.3/animation/man/MC.hitormiss.Rd | 64 -
animation-2.3/animation/man/MC.samplemean.Rd | 84 --
animation-2.3/animation/man/ObamaSpeech.Rd | 8
animation-2.3/animation/man/Rosling.bubbles.Rd | 90 +-
animation-2.3/animation/man/ani.options.Rd | 333 +++-----
animation-2.3/animation/man/ani.pause.Rd | 19
animation-2.3/animation/man/ani.record.Rd | 109 +-
animation-2.3/animation/man/ani.start.Rd | 48 -
animation-2.3/animation/man/animation-package.Rd | 151 +--
animation-2.3/animation/man/bisection.method.Rd | 100 +-
animation-2.3/animation/man/boot.iid.Rd | 97 +-
animation-2.3/animation/man/boot.lowess.Rd | 31
animation-2.3/animation/man/brownian.motion.Rd | 58 -
animation-2.3/animation/man/buffon.needle.Rd | 133 +--
animation-2.3/animation/man/clt.ani.Rd | 101 +-
animation-2.3/animation/man/conf.int.Rd | 72 -
animation-2.3/animation/man/convert.Rd | 160 +--
animation-2.3/animation/man/cv.ani.Rd | 73 -
animation-2.3/animation/man/cv.nfeaturesLDA.Rd | 122 +-
animation-2.3/animation/man/ecol.death.sim.Rd | 54 -
animation-2.3/animation/man/flip.coin.Rd | 105 +-
animation-2.3/animation/man/g.brownian.motion.Rd | 65 -
animation-2.3/animation/man/grad.desc.Rd | 150 +--
animation-2.3/animation/man/iatemp.Rd | 5
animation-2.3/animation/man/kfcv.Rd | 22
animation-2.3/animation/man/kmeans.ani.Rd | 106 +-
animation-2.3/animation/man/knn.ani.Rd | 132 +--
animation-2.3/animation/man/least.squares.Rd | 99 +-
animation-2.3/animation/man/lln.ani.Rd | 66 -
animation-2.3/animation/man/moving.block.Rd | 119 +-
animation-2.3/animation/man/mwar.ani.Rd | 82 --
animation-2.3/animation/man/newton.method.Rd | 96 +-
animation-2.3/animation/man/pageview.Rd | 6
animation-2.3/animation/man/pdftk.Rd | 41 -
animation-2.3/animation/man/pollen.Rd | 8
animation-2.3/animation/man/price.ani.Rd | 30
animation-2.3/animation/man/qpdf.Rd | 34
animation-2.3/animation/man/quincunx.Rd | 105 +-
animation-2.3/animation/man/sample.cluster.Rd | 38
animation-2.3/animation/man/sample.ratio.Rd | 60 -
animation-2.3/animation/man/sample.simple.Rd | 38
animation-2.3/animation/man/sample.strat.Rd | 43 -
animation-2.3/animation/man/sample.system.Rd | 36
animation-2.3/animation/man/saveGIF.Rd | 158 +--
animation-2.3/animation/man/saveHTML.Rd | 225 ++---
animation-2.3/animation/man/saveLatex.Rd | 242 ++---
animation-2.3/animation/man/saveSWF.Rd | 103 +-
animation-2.3/animation/man/saveVideo.Rd | 84 --
animation-2.3/animation/man/sim.qqnorm.Rd | 46 -
animation-2.3/animation/man/vanke1127.Rd | 10
animation-2.3/animation/man/vi.grid.illusion.Rd | 39
animation-2.3/animation/man/vi.lilac.chaser.Rd | 34
animation-2.3/animation/tests/run-all.R |only
animation-2.3/animation/tests/testit |only
151 files changed, 5109 insertions(+), 5788 deletions(-)