Thu, 07 Aug 2014

Package MPTinR updated to version 1.5.1 with previous version 1.4.0 dated 2014-05-10

Title: Analyze Multinomial Processing Tree Models
Description: MPTinR provides a user-friendly way for the analysis of multinomial processing tree (MPT) models (e.g., Riefer, D. M., and Batchelder, W. H. [1988]. Multinomial modeling and the measurement of cognitive processes. Psychological Review, 95, 318-339) for single and multiple datasets. The main functions perform model fitting and model selection. Model selection can be done using AIC, BIC, or the Fisher Information Approximation (FIA) a measure based on the Minimum Description Length (MDL) framework. The model and restrictions can be specified in external files or within an R script in an intuitive syntax or using the contextree language for MPTs. The 'classical' .EQN file format for model files is also supported. Besides MPTs, MPTinR can fit a wide variety of other cognitive models such as SDT models (see fit.model). MPTinR supports multicore fitting and FIA calculation using the snowfall package. MPTinR can generate data from a model for e.g., simulation or parametric bootstrap and plot predicted versus observed data.
Author: Henrik Singmann [aut, cre], David Kellen [aut], Quentin Gronau [aut], Christian Mueller [ctb], Akhil S Bhel [ctb]
Maintainer: Henrik Singmann

Diff between MPTinR versions 1.4.0 dated 2014-05-10 and 1.5.1 dated 2014-08-07

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Package fPortfolio (with last version 2130.80) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-10 2130.80
2010-04-17 2110.79
2009-09-28 2100.78
2009-04-20 2100.77
2009-04-17 2100.76
2009-04-16 290.75
2008-10-27 280.74
2008-10-23 280.73
2007-10-08 260.72
2007-07-10 251.70
2007-06-28 240.10068

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New package BcDiag with initial version 1.0.4
Package: BcDiag
Version: 1.0.4
Date: 2014-08-06
Title: Diagnostics plots for Bicluster Data
License: GPL (>= 2)
Depends: R (>= 2.10)
Suggests: biclust, fabia, isa2
Author: Aregay Mengsteab, Martin Otava, Tatsiana Khamiakova, Ewoud De Troyer
Maintainer: Ewoud De Troyer
Description: This package provides Diagnostic tools based on two way anova and median polish residual plots for Bicluster output obtained from packages; "biclust" by Kaiser et al.(2008),"isa2" by Csardi et al. (2010) and "fabia" by Hochreiter et al. (2010). Moreover, It provides visualization tools for bicluster output and corresponding non bicluster rows or columns outcomes. It has also extended the idea of Kaiser et al.(2008) which is, extracting bicluster output in a text format, by adding by adding two bicluster methods from fabia and isa2 r packages.
Packaged: 2014-08-06 13:59:12 UTC; Ewoud
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-08 01:00:00

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Package rprintf updated to version 0.1-1 with previous version 0.1 dated 2014-06-06

Title: Adaptive builder for formatted strings
Description: A set of tools for building formatted string under various replacement rules: C-style formatting, named variable-based formatting, and number-based formatting
Author: Kun Ren
Maintainer: Kun Ren

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Package rlist updated to version 0.3 with previous version 0.2.5 dated 2014-07-31

Title: A set of tools for working with list objects
Description: A set of tools for working with lists as dataset, including filtering, mapping, grouping, sorting, updating, searching, and many other functions. It recommends functional programming and collection pipeline in list operations.
Author: Kun Ren
Maintainer: Kun Ren

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Package fCopulae (with last version 3000.79) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-18 3000.79
2009-10-28 2110.78
2009-09-28 2100.77
2009-04-20 2100.76
2009-04-16 290.75
2008-10-27 270.74
2008-10-23 270.73
2007-10-08 260.72
2007-10-02 260.71
2007-07-10 251.70

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Package StVAR (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-25 1.0

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Package fRegression (with last version 3010.80) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-01-02 3010.80
2013-12-17 3010.79
2013-06-23 3010.78
2012-12-10 2160.77
2009-09-29 2100.76
2009-04-16 290.75
2008-10-27 270.74
2008-10-23 270.73
2007-10-08 260.72
2007-10-02 260.71

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Package fAssets (with last version 3003.81-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-08-04 3003.81-1
2014-03-26 3003.81
2013-12-17 3002.80
2012-09-24 2110.79
2009-09-28 2100.78
2009-04-20 2100.77
2009-04-17 2100.76
2009-04-16 290.75
2008-10-27 280.74
2008-10-23 280.73
2007-10-08 260.72

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Package JJcorr (with last version 0.01) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-02-02 0.01

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Package fMultivar (with last version 2152.77) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-11-07 2152.77
2009-09-29 2100.76
2009-04-16 290.75
2008-10-27 270.74
2008-10-23 270.73
2007-10-08 260.72
2007-10-02 260.71
2007-07-10 251.70
2006-10-22 240.10068

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Package xergm updated to version 1.1 with previous version 1.0 dated 2014-05-28

Title: Extensions for Exponential Random Graph Models (ERGM)
Description: The xergm package implements temporal exponential random graph models (TERGM) by bootstrapped pseudolikelihood ("btergm") and (temporal) network autocorrelation models ("tnam").
Author: Philip Leifeld [aut, cre], Skyler J. Cranmer [aut], Bruce A. Desmarais [aut]
Maintainer: Philip Leifeld

Diff between xergm versions 1.0 dated 2014-05-28 and 1.1 dated 2014-08-07

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Package BSSasymp updated to version 1.0-2 with previous version 1.0-1 dated 2014-06-19

Title: Asymptotic covariance matrices of some BSS mixing and unmixing matrix estimates.
Description: The package includes functions to compute the asymptotic covariance matrices of mixing and unmixing matrix estimates of the following blind source separation (BSS) methods: adaptive FastICA, FOBI, JADE, AMUSE and deflation-based and symmetric SOBI. Also functions to estimate these covariances based on data are available.
Author: Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Jari Miettinen

Diff between BSSasymp versions 1.0-1 dated 2014-06-19 and 1.0-2 dated 2014-08-07

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Package RGENERATE updated to version 1.1 with previous version 1.0 dated 2014-01-23

Title: RGENERATE A tool for generation random variable time series using the tools of 'vars' or 'RMAWGEN'
Description: A method `generate` is implemented in this package for the random generation of vector time series according to models obtained by `RMAWGEN`, `vars` or other packages. This package was created to generalize `RMAWGEN` algorithms for the analysis and generation of any environmental vector time series.Bugs/comments/questions/collaboration of any kind are warmly welcomed.
Author: Emanuele Cordano
Maintainer: Emanuele Cordano

Diff between RGENERATE versions 1.0 dated 2014-01-23 and 1.1 dated 2014-08-07

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Package RCryptsy (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-07-06 0.1

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New package signal.hsmm with initial version 1.0
Package: signal.hsmm
Type: Package
Title: Predict Presence of Signal Peptides
Version: 1.0
LazyData: true
Date: 2014-06-25
Author: Michal Burdukiewicz, Piotr Sobczyk
Maintainer: Michal Burdukiewicz
Description: Predicts presence of signal peptides in eukaryotic protein using hidden semi-Markov models. The implemented algorithm can be accessed both from command line and GUI.
License: GPL-3
URL: https://github.com/michbur/signal.hsmm
Depends: R (>= 3.0.0)
Imports: seqinr, shiny
Suggests: knitr, markdown, shinyAce
NeedsCompilation: no
Repository: CRAN
Packaged: 2014-08-07 07:16:37 UTC; michal
Date/Publication: 2014-08-07 09:09:40

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Package pollstR updated to version 1.0.2 with previous version 1.0.1 dated 2014-07-15

Title: R client for the Huffpost Pollster API
Description: An R interface to the Huffington Post Pollster API, which provides programmatic interface to political polls.
Author: Jeffrey B. Arnold [aut, cre], Thomas J. Leeper [aut]
Maintainer: Jeffrey B. Arnold

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Package HWxtest updated to version 1.0.3 with previous version 1.0.2 dated 2014-08-02

Title: Exact Tests for Hardy-Weinberg Proportions
Description: Tests whether a set of genotype counts fits the HW expectations. Exact tests performed by an efficient algorithm. Included test statistics are likelihood ratio, probability, U-score and Pearsons X2.
Author: Bill Engels
Maintainer: Bill Engels

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