Package SnowballC updated to version 0.5.1 with previous version 0.5 dated 2013-05-22

Title: Snowball stemmers based on the C libstemmer UTF-8 library
Description: An R interface to the C libstemmer library that implements Porter's word stemming algorithm for collapsing words to a common root to aid comparison of vocabulary. Currently supported languages are Danish, Dutch, English, Finnish, French, German, Hungarian, Italian, Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.
Author: Milan Bouchet-Valat [aut, cre]
Maintainer: Milan Bouchet-Valat

Diff between SnowballC versions 0.5 dated 2013-05-22 and 0.5.1 dated 2014-08-08

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 20 files changed, 30 insertions(+), 28 deletions(-)

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New package growfunctions with initial version 0.1
Package: growfunctions
Type: Package
Title: Bayesian non-parametric dependent models for time-indexed functional data
Version: 0.1
Date: 2014-08-01
Author: Terrance Savitsky
Maintainer: Terrance Savitsky
Description: Estimates a collection of time-indexed functions under either of Gaussian process (GP) or intrinsic Gaussian Markov random field (iGMRF) prior formulations where a Dirichlet process mixture allows sub-groupings of the functions to share the same covariance or precision parameters. The GP and iGMRF formulations both support any number of additive covariance or precision terms, respectively, expressing either or both of multiple trend and seasonality.
License: GPL (>= 3)
Depends: R (>= 3.1.1), Rcpp (>= 0.11.2)
LinkingTo: Rcpp (>= 0.11.2), RcppArmadillo (>= 0.4.000)
Imports: Matrix(>= 1.1), spam(>= 0.41-0), mvtnorm(>= 1.0-0), ggplot2(>= 0.9.3.1), reshape2(>= 1.2.2), scales(>= 0.2.3)
Suggests: testthat(>= 0.8.1)
Collate: 'MSPE.R' 'cps.R' 'gen_informative_sample.R' 'gpdpgrow.R' 'gmrfdpgrow.R' 'gp_car_fit_compare_facet.R' 'gp_cluster_plot.R' 'gp_informative_compare_plot.R' 'help.R' 'plot_cluster.R' 'predict_plot.R'
Packaged: 2014-08-08 18:40:26 UTC; savitsky_t
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-09 00:03:47

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New package ecipex with initial version 1.0
Package: ecipex
Type: Package
Title: Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
Author: Andreas Ipsen
Maintainer: Andreas Ipsen
Imports: CHNOSZ
Description: Provides a function that quickly computes the fine structure isotope patterns of a set of chemical formulas to a given degree of accuracy (up to the limit set by errors in floating point arithmetic). A data-set comprising the masses and isotopic abundances of individual elements is also provided.
License: GPL (>= 2)
Repository: CRAN
LazyData: true
Version: 1.0
Date: 2014-08-04
Packaged: 2014-08-08 21:48:51 UTC; Andreas
NeedsCompilation: no
Date/Publication: 2014-08-09 00:32:17

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Package CHAT updated to version 1.1 with previous version 1.0 dated 2014-04-30

Title: Clonal Heterogeneity Analysis Tool
Description: CHAT is a collection of tools developed for tumor subclonality analysis using high density DNA SNP array data and sequencing data. The pipeline consists of four major compartments: 1) tumor aneuploid genome proportion (AGP) calculation and ploidy estimation. 2) segment-specific AGP calculation and absolute copy number estimation for somatic CNAs. 3) cancer cell fraction correction for somatic SNVs in clonal or subclonal sCNA regions. 4) number of subclones estimation using Dirichlet process prior followed by MCMC approach.
Author: Bo Li
Maintainer: Bo Li

Diff between CHAT versions 1.0 dated 2014-04-30 and 1.1 dated 2014-08-08

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Package binseqtest updated to version 1.0 with previous version 0.5 dated 2014-07-03

Title: Exact Binary Sequential Designs and Analysis
Description: For a series of binary responses, create stopping boundary with exact results after stopping, allowing updating for missing assessments.
Author: Jenn Kirk, Michael P. Fay
Maintainer: Michael P. Fay

Diff between binseqtest versions 0.5 dated 2014-07-03 and 1.0 dated 2014-08-08

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New package astrolibR with initial version 0.1
Package: astrolibR
Type: Package
Title: Astronomy Users Library
Version: 0.1
Date: 2014-07-30
Author: Arnab Chakraborty and Eric D. Feigelson
Maintainer: Eric D. Feigelson
Description: Several dozen low-level utilities and codes from the Interactive Data Language (IDL) Astronomy Users Library (http://idlastro.gsfc.nasa.gov) are implemented in R. They treat: time, coordinate and proper motion transformations; terrestrial precession and nutation, atmospheric refraction and aberration, barycentric corrections, and related effects; utilities for astrometry, photometry, and spectroscopy; and utilities for planetary, stellar, Galactic, and extragalactic science.
License: GPL
Packaged: 2014-08-08 21:11:35 UTC; e5f
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-09 00:14:43

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Package swirl updated to version 2.2.15 with previous version 2.2.14 dated 2014-07-30

Title: Learn R, in R.
Description: swirl turns the R console into an interactive learning environment. Users receive immediate feedback as they are guided through self-paced lessons in data science and R programming.
Author: Nick Carchedi [aut, cre], Bill Bauer [aut], Gina Grdina [aut], Sean Kross [aut]
Maintainer: Nick Carchedi

Diff between swirl versions 2.2.14 dated 2014-07-30 and 2.2.15 dated 2014-08-08

 DESCRIPTION |    6 +++---
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 3 files changed, 6 insertions(+), 6 deletions(-)

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Package strap updated to version 1.3 with previous version 1.2 dated 2014-05-12

Title: Stratigraphic Tree Analysis for Palaeontology
Description: Functions for the stratigraphic analysis of phylogenetic trees.
Author: Mark A. Bell Graeme T. Lloyd .
Maintainer: Mark A. Bell

Diff between strap versions 1.2 dated 2014-05-12 and 1.3 dated 2014-08-08

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Package stringdist updated to version 0.8.0 with previous version 0.7.3 dated 2014-05-16

Title: Approximate string matching and string distance functions.
Description: Implements an approximate string matching version of R's native 'match' function. Can calculate various string distances based on edits (damerau-levenshtein, hamming, levenshtein, optimal sting alignment), qgrams (q-gram, cosine, jaccard distance) or heuristic metrics (jaro, jaro-winkler). An implementation of soundex is provided as well.
Author: Mark van der Loo [aut, cre], Jan van der Laan [ctb]
Maintainer: Mark van der Loo

Diff between stringdist versions 0.7.3 dated 2014-05-16 and 0.8.0 dated 2014-08-08

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Package itertools2 updated to version 0.1.1 with previous version 0.1 dated 2014-07-17

Title: itertools2: Functions creating iterators for efficient looping
Description: A port of Python's excellent itertools module to R for efficient looping.
Author: John A. Ramey , Kayla Schaefer
Maintainer: John A. Ramey

Diff between itertools2 versions 0.1 dated 2014-07-17 and 0.1.1 dated 2014-08-08

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Package wbs updated to version 1.2 with previous version 1.1 dated 2014-01-08

Title: Wild Binary Segmentation for multiple change-point detection
Description: The package implements Wild Binary Segmentation and Binary Segmentation algorithms for estimation of the number and locations of multiple change-points in the piecewise constant function plus Gaussian noise model.
Author: Rafal Baranowski and Piotr Fryzlewicz
Maintainer: Rafal Baranowski

Diff between wbs versions 1.1 dated 2014-01-08 and 1.2 dated 2014-08-08

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Package treeclim updated to version 1.0.7 with previous version 1.0.5 dated 2014-08-06

Title: Numerical calibration of proxy-climate relationships
Description: Bootstrapped response and correlation functions, seasonal correlations and evaluation of reconstruction skills for use in dendroclimatology and dendroecology
Author: Christian Zang [aut, cre, cph, trl], Franco Biondi [ctb, cph]
Maintainer: Christian Zang

Diff between treeclim versions 1.0.5 dated 2014-08-06 and 1.0.7 dated 2014-08-08

 DESCRIPTION    |   14 -
 MD5            |    6 
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 4 files changed, 404 insertions(+), 384 deletions(-)

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New package RTriangle with initial version 1.6-0.6
Copyright: 1993, 1995, 1997, 1998, 2002, 2005 Jonathan Richard Shewchuk; 2011-2013 David Sterratt
Package: RTriangle
Maintainer: David C. Sterratt
License: CC BY-NC-SA 4.0
Title: Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator
Author: Jonathan Shewchuk, David C. Sterratt
Description: This is a port of Jonathan Shewchuk's Triangle library to R. From his description: "Triangle generates exact Delaunay triangulations, constrained Delaunay triangulations, conforming Delaunay triangulations, Voronoi diagrams, and high-quality triangular meshes. The latter can be generated with no small or large angles, and are thus suitable for finite element analysis."
Version: 1.6-0.6
URL: http://triangle.R-Forge.R-project.org, http://www.cs.cmu.edu/~quake/triangle.html
Date: 2014-08-06
Depends: R (>= 3.0.0)
Repository: CRAN
Repository/R-Forge/Project: triangle
Repository/R-Forge/Revision: 79
Repository/R-Forge/DateTimeStamp: 2014-08-07 17:04:05
Date/Publication: 2014-08-08 13:19:38
Packaged: 2014-08-07 18:15:07 UTC; rforge
NeedsCompilation: yes

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Package rgp updated to version 0.4-1 with previous version 0.4-0 dated 2014-03-12

Title: R genetic programming framework
Description: RGP is a simple modular Genetic Programming (GP) system build in pure R. In addition to general GP tasks, the system supports Symbolic Regression by GP through the familiar R model formula interface. GP individuals are represented as R expressions, an (optional) type system enables domain-specific function sets containing functions of diverse domain- and range types. A basic set of genetic operators for variation (mutation and crossover) and selection is provided.
Author: Oliver Flasch, Olaf Mersmann, Thomas Bartz-Beielstein, Joerg Stork, Martin Zaefferer
Maintainer: Oliver Flasch

Diff between rgp versions 0.4-0 dated 2014-03-12 and 0.4-1 dated 2014-08-08

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 rgp-0.4-1/rgp/man/searchSpaceDefinition.Rd                           |   87 +--
 rgp-0.4-1/rgp/man/selectionFunctions.Rd                              |  112 +---
 rgp-0.4-1/rgp/man/smse.Rd                                            |   14 
 rgp-0.4-1/rgp/man/sortBy.Rd                                          |    9 
 rgp-0.4-1/rgp/man/sortByRange.Rd                                     |    7 
 rgp-0.4-1/rgp/man/sortByRanking.Rd                                   |    9 
 rgp-0.4-1/rgp/man/sortByType.Rd                                      |    7 
 rgp-0.4-1/rgp/man/sortingAlgorithms.Rd                               |   22 
 rgp-0.4-1/rgp/man/sse.Rd                                             |    5 
 rgp-0.4-1/rgp/man/ssse.Rd                                            |    5 
 rgp-0.4-1/rgp/man/subDataFrame.Rd                                    |   15 
 rgp-0.4-1/rgp/man/summary.geneticProgrammingResult.Rd                |   31 -
 rgp-0.4-1/rgp/man/symbolicRegression.Rd                              |  210 +++------
 rgp-0.4-1/rgp/man/tabulateFunction.Rd                                |   10 
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 rgp-0.4-1/rgp/vignettes/Makefile                                     |    3 
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 rgp-0.4-1/rgp/vignettes/rgp_introduction.Rnw                         |   22 
 119 files changed, 1806 insertions(+), 2255 deletions(-)

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New package LDRTools with initial version 0.1
Package: LDRTools
Type: Package
Title: Tools for Linear Dimension Reduction
Version: 0.1
Date: 2014-08-08
Authors@R: c(person("Eero", "Liski", role = c("aut", "cre"), email = "liskieero@gmail.com"), person("Klaus", "Nordhausen", role = "aut"), person("Hannu", "Oja", role = "aut"), person("Anne", "Ruiz-Gazen", role = "aut"))
Depends: R (>= 3.0.0)
Suggests: dr
Description: Linear dimension reduction and the corresponding subspaces can be uniquely defined using orthogonal projection matrices. This package provides tools to compute distances between such subspaces and to compute the average subspace.
License: GPL (>= 2)
Packaged: 2014-08-08 08:38:34 UTC; liskiadmin
Maintainer: Eero Liski
Author: Eero Liski [aut, cre], Klaus Nordhausen [aut], Hannu Oja [aut], Anne Ruiz-Gazen [aut]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-08 13:14:25

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Package bigRR (with last version 1.3-8) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-08-12 1.3-8
2013-05-02 1.3-6

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Package optmatch (with last version 0.9-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-11-01 0.9-1
2013-08-09 0.9-0
2013-05-16 0.8-3
2013-01-03 0.8-1
2012-11-17 0.8-0
2012-07-27 0.7-5
2012-04-02 0.7-3
2011-03-06 0.7-1
2010-07-30 0.7-0
2010-02-11 0.6-1
2009-09-28 0.6-0
2009-05-19 0.5-0
2008-07-05 0.4-1
2008-05-20 0.4-0
2008-05-14 0.3-9
2008-05-13 0.3-8
2008-02-27 0.3-4
2007-08-25 0.3-3
2007-08-09 0.3-2
2007-07-09 0.3-1
2007-05-10 0.2-3

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Package algstat (with last version 0.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-07-13 0.0.1
2014-04-29 0.0.0

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New package SpatialPack with initial version 0.2-3
Package: SpatialPack
Version: 0.2-3
Date: 2014-08-07
Title: Package for analysis of spatial data
Author: Felipe Osorio and Ronny Vallejos , with contributions of Francisco Cuevas and Diego Mancilla.
Maintainer: Felipe Osorio
Suggests: geoR
Description: This package provides tools to assess the association between two spatial processes. Currently, three methodologies are implemented: An adapted t-test to perform hypothesis testing about the independence between the processes, a suitable nonparametric correlation coefficient, and the codispersion coefficient. SpatialPack gives methods to complement methodologies that are available in geoR for one spatial process.
License: GPL (>= 2)
URL: http://spatialpack.mat.utfsm.cl
LazyLoad: yes
LazyData: yes
Packaged: 2014-08-07 19:34:42 UTC; root
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-08 08:04:01

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Package portes updated to version 2.1-3 with previous version 2.1-1 dated 2013-10-17

Title: Portmanteau Tests for Univariate and Multivariate Time Series Models
Description: This package contains a set of portmanteau diagnostic checks for univariate and multivariate time series.
Author: Esam Mahdi, Ken Jinkun Xiao and A. Ian McLeod
Maintainer: A. Ian McLeod

Diff between portes versions 2.1-1 dated 2013-10-17 and 2.1-3 dated 2014-08-08

 DESCRIPTION           |   12 ++---
 MD5                   |   24 +++++-----
 R/BoxPierce.R         |    2 
 R/Hosking.R           |    2 
 R/LiMcLeod.R          |    2 
 R/LjungBox.R          |    2 
 R/ToeplitzBlock.R     |   37 ++++++++++-----
 R/gvtest.r            |   11 +++-
 R/portest.R           |  120 +++++++++++++++++++++++++++++++++++++++++---------
 man/ToeplitzBlock.Rd  |   15 +++++-
 man/gvtest.Rd         |    5 +-
 man/portes-package.Rd |    4 -
 man/portest.Rd        |   47 ++++++++++---------
 13 files changed, 195 insertions(+), 88 deletions(-)

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Package pipeR updated to version 0.4 with previous version 0.3-3 dated 2014-08-02

Title: High-performance pipeline operator and object
Description: Provides high-performance pipeline operator and object based on a set of simple and intuitive rules, making command chaining definite, readable and fast.
Author: Kun Ren
Maintainer: Kun Ren

Diff between pipeR versions 0.3-3 dated 2014-08-02 and 0.4 dated 2014-08-08

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 pipeR-0.4/pipeR/DESCRIPTION                                    |   18 -
 pipeR-0.4/pipeR/MD5                                            |   37 +-
 pipeR-0.4/pipeR/NAMESPACE                                      |    5 
 pipeR-0.4/pipeR/NEWS                                           |    6 
 pipeR-0.4/pipeR/R/functions.R                                  |   46 ++-
 pipeR-0.4/pipeR/R/legacy.R                                     |only
 pipeR-0.4/pipeR/R/pipe.R                                       |only
 pipeR-0.4/pipeR/R/pipeR.R                                      |  114 +++----
 pipeR-0.4/pipeR/README.md                                      |  146 ++++------
 pipeR-0.4/pipeR/inst/doc/Examples.R                            |   25 +
 pipeR-0.4/pipeR/inst/doc/Examples.html                         |   87 ++++-
 pipeR-0.4/pipeR/inst/doc/Introduction.html                     |  128 ++++----
 pipeR-0.4/pipeR/inst/doc/Performance.R                         |   40 ++
 pipeR-0.4/pipeR/inst/doc/Performance.html                      |   85 +++--
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 27 files changed, 434 insertions(+), 303 deletions(-)

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New package pedometrics with initial version 0.1-9
Package: pedometrics
Title: Pedometric Tools and Techniques
Version: 0.1-9
Date: 2014-08-01
Authors@R: c(person("Alessandro Samuel-Rosa", role = c("aut", "cre"), email = "alessandrosamuelrosa@gmail.com"), person("Lucia H. C. Anjos", role = "ths", email = "lanjos@ufrrj.br"), person("Gustavo M. Vasques", role = "ths", email = "gustavo.vasques@embrapa.br"), person("Gerard B. M. Heuvelink", role = "ths", email = "gerard.heuvelink@wur.nl"))
Author: Alessandro Samuel-Rosa [aut, cre], Lucia H. C. Anjos [ths], Gustavo M. Vasques [ths], Gerard B. M. Heuvelink [ths]
Maintainer: Alessandro Samuel-Rosa
Depends: R (>= 1.8.0)
Imports: spsurvey, xtable, XML, stringr, sp, car, pbapply, MASS, plyr, lattice, latticeExtra, grid, VecStatGraphs2D, mvtsplot
Suggests: methods
Description: This package contains functions to employ many tools and techniques used in the field of pedometrics (see http://en.wikipedia.org/wiki/Pedometrics for definition of pedometrics). These functions were developed to fulfill the demands created by the PhD research project (2012-2016) entitled Contribution to the Construction of Models for Predicting Soil Properties, developed by Alessandro Samuel-Rosa under the supervision of Dr Lucia HC Anjos (Federal Rural University of Rio de Janeiro, Brazil), Dr Gustavo M Vasques (Embrapa Soils, Brazil), and Dr Gerard BM Heuvelink (ISRIC - World Soil Information, the Netherlands). The project is supported by the CAPES Foundation, Ministry of Education of Brazil, Brasilia - DF 70040-020, Brazil, process ID BEX 11677/13-9. Several functions are simple wrapper functions that extend the functionalities of other functions commonly used for the analysis of pedometric data. It should be noted that changes are likely to occur quite often and using this package as a dependency for other packages is strongly discouraged.
License: GPL (>= 2)
URL: http://soil-scientist.net
Repository: CRAN
Repository/R-Forge/Project: pedometrics
Repository/R-Forge/Revision: 56
Repository/R-Forge/DateTimeStamp: 2014-08-07 14:26:56
Date/Publication: 2014-08-08 07:43:13
Packaged: 2014-08-07 16:15:12 UTC; rforge
NeedsCompilation: no

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