Title: minerva: Maximal Information-Based Nonparametric Exploration R
package for Variable Analysis
Diff between minerva versions 1.3 dated 2013-01-07 and 1.4 dated 2014-08-15
Description: R wrapper for cmine implementation of
Maximal Information-based Nonparametric Exploration statistics (MIC and MINE family)
Author: Michele Filosi [aut, cre],
Roberto Visintainer [aut],
Davide Albanese [aut],
Samantha Riccadonna [ctb],
Giuseppe Jurman [ctb],
Cesare Furlanello [ctb]
Maintainer: Michele Filosi
minerva-1.3/minerva/gpl-3.0.txt |only
minerva-1.3/minerva/missfont.log |only
minerva-1.3/minerva/src/core.c |only
minerva-1.3/minerva/src/core.h |only
minerva-1.3/minerva/tests/MINE.jar |only
minerva-1.3/minerva/tests/MINEJAVA.sh |only
minerva-1.3/minerva/tests/Spellman.csv |only
minerva-1.3/minerva/tests/Spellman.csv,0-vs-1,cv=0.0,B=n^0.6,Results.csv |only
minerva-1.3/minerva/tests/Spellman.csv,0-vs-1,cv=0.0,B=n^0.6,Status.txt |only
minerva-1.3/minerva/tests/Spellman.csv,mv=0,cv=0.0,B=n^0.6,Results.csv |only
minerva-1.3/minerva/tests/Spellman.csv,mv=0,cv=0.0,B=n^0.6,Status.txt |only
minerva-1.3/minerva/tests/hs_err_pid16149.log |only
minerva-1.3/minerva/tests/valgrind.out |only
minerva-1.4/minerva/DESCRIPTION | 37
minerva-1.4/minerva/MD5 | 26
minerva-1.4/minerva/R/mine.R | 78
minerva-1.4/minerva/man/mine.Rd | 6
minerva-1.4/minerva/src/mine.c | 1084 ++++++++--
minerva-1.4/minerva/src/mine.h | 60
minerva-1.4/minerva/src/mine_interface.c | 63
minerva-1.4/minerva/tests/java_vs_R.txt |only
21 files changed, 1093 insertions(+), 261 deletions(-)
Title: Some further GIS capabilities for R
Diff between GISTools versions 0.7-2 dated 2014-01-25 and 0.7-3 dated 2014-08-15
Description: Some mapping and spatial data manipulation tools - in particular
drawing choropleth maps with nice looking legends, and aggregation of point
data to polygons.
Author: Chris Brunsdon and Hongyan Chen
Maintainer: Chris Brunsdon
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
NAMESPACE | 2 +-
data/datalist | 2 +-
data/georgia.RData |binary
man/georgia.Rd | 2 ++
6 files changed, 14 insertions(+), 12 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.37-0 dated 2014-05-09 and 1.38-0 dated 2014-08-15
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network.
Contains about 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm similar to glm. Types of models include Poisson, Gibbs, Cox and cluster point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.37-0/spatstat/R/kstest.R |only
spatstat-1.37-0/spatstat/R/kstest.mppm.R |only
spatstat-1.37-0/spatstat/man/bermantest.Rd |only
spatstat-1.37-0/spatstat/man/kstest.Rd |only
spatstat-1.37-0/spatstat/man/kstest.mppm.Rd |only
spatstat-1.37-0/spatstat/man/plot.kstest.Rd |only
spatstat-1.38-0/spatstat/DESCRIPTION | 32
spatstat-1.38-0/spatstat/MD5 | 558 +++---
spatstat-1.38-0/spatstat/NAMESPACE | 229 ++
spatstat-1.38-0/spatstat/NEWS | 505 +++++
spatstat-1.38-0/spatstat/R/Gcom.R | 16
spatstat-1.38-0/spatstat/R/Jinhom.R | 16
spatstat-1.38-0/spatstat/R/Kcom.R | 27
spatstat-1.38-0/spatstat/R/Kinhom.R | 4
spatstat-1.38-0/spatstat/R/Ksector.R |only
spatstat-1.38-0/spatstat/R/affine.R | 2
spatstat-1.38-0/spatstat/R/anova.ppm.R | 51
spatstat-1.38-0/spatstat/R/areainter.R | 2
spatstat-1.38-0/spatstat/R/as.im.R | 4
spatstat-1.38-0/spatstat/R/beginner.R | 20
spatstat-1.38-0/spatstat/R/bermantest.R | 51
spatstat-1.38-0/spatstat/R/boundingbox.R | 241 +-
spatstat-1.38-0/spatstat/R/bw.diggle.R |only
spatstat-1.38-0/spatstat/R/cdf.test.mppm.R |only
spatstat-1.38-0/spatstat/R/cdftest.R |only
spatstat-1.38-0/spatstat/R/centroid.R | 18
spatstat-1.38-0/spatstat/R/clarkevans.R | 22
spatstat-1.38-0/spatstat/R/close3Dpairs.R |only
spatstat-1.38-0/spatstat/R/closepairs.R | 25
spatstat-1.38-0/spatstat/R/colourtools.R | 28
spatstat-1.38-0/spatstat/R/cut.ppp.R | 5
spatstat-1.38-0/spatstat/R/dclftest.R | 397 ++--
spatstat-1.38-0/spatstat/R/deldir.R | 27
spatstat-1.38-0/spatstat/R/density.ppp.R | 77
spatstat-1.38-0/spatstat/R/density.psp.R | 7
spatstat-1.38-0/spatstat/R/derivfv.R | 33
spatstat-1.38-0/spatstat/R/dist2dpath.R | 18
spatstat-1.38-0/spatstat/R/distances.R | 6
spatstat-1.38-0/spatstat/R/distbdry.R | 25
spatstat-1.38-0/spatstat/R/distfun.R | 11
spatstat-1.38-0/spatstat/R/distmap.R | 7
spatstat-1.38-0/spatstat/R/dppmclass.R |only
spatstat-1.38-0/spatstat/R/dummy.R | 11
spatstat-1.38-0/spatstat/R/envelope.R | 445 +++--
spatstat-1.38-0/spatstat/R/envelope3.R | 4
spatstat-1.38-0/spatstat/R/envelopelpp.R | 6
spatstat-1.38-0/spatstat/R/eval.fasp.R | 5
spatstat-1.38-0/spatstat/R/eval.fv.R | 55
spatstat-1.38-0/spatstat/R/eval.im.R | 8
spatstat-1.38-0/spatstat/R/fryplot.R | 85 -
spatstat-1.38-0/spatstat/R/funxy.R | 2
spatstat-1.38-0/spatstat/R/fv.R | 202 +-
spatstat-1.38-0/spatstat/R/hexagons.R | 40
spatstat-1.38-0/spatstat/R/hybrid.family.R | 24
spatstat-1.38-0/spatstat/R/hyperframe.R | 10
spatstat-1.38-0/spatstat/R/hypersub.R | 6
spatstat-1.38-0/spatstat/R/images.R | 166 +
spatstat-1.38-0/spatstat/R/intensity.R | 15
spatstat-1.38-0/spatstat/R/interp.im.R | 88 -
spatstat-1.38-0/spatstat/R/iplot.R | 35
spatstat-1.38-0/spatstat/R/iplotlayered.R | 32
spatstat-1.38-0/spatstat/R/ippm.R | 181 +-
spatstat-1.38-0/spatstat/R/is.subset.owin.R | 7
spatstat-1.38-0/spatstat/R/istat.R | 10
spatstat-1.38-0/spatstat/R/kppm.R | 368 ++++
spatstat-1.38-0/spatstat/R/layered.R | 103 -
spatstat-1.38-0/spatstat/R/leverage.R | 8
spatstat-1.38-0/spatstat/R/linnet.R | 28
spatstat-1.38-0/spatstat/R/listof.R | 4
spatstat-1.38-0/spatstat/R/logistic.R | 28
spatstat-1.38-0/spatstat/R/lpp.R | 50
spatstat-1.38-0/spatstat/R/lppm.R | 18
spatstat-1.38-0/spatstat/R/lurking.R | 12
spatstat-1.38-0/spatstat/R/marks.R | 4
spatstat-1.38-0/spatstat/R/measures.R | 22
spatstat-1.38-0/spatstat/R/morishita.R | 11
spatstat-1.38-0/spatstat/R/mpl.R | 1518 +++++++++---------
spatstat-1.38-0/spatstat/R/nndensity.R | 2
spatstat-1.38-0/spatstat/R/nnfun.R | 2
spatstat-1.38-0/spatstat/R/options.R | 62
spatstat-1.38-0/spatstat/R/pairorient.R |only
spatstat-1.38-0/spatstat/R/pairs.im.R | 58
spatstat-1.38-0/spatstat/R/pixellate.R | 4
spatstat-1.38-0/spatstat/R/plot.fv.R | 991 ++++++-----
spatstat-1.38-0/spatstat/R/plot.im.R | 241 +-
spatstat-1.38-0/spatstat/R/plot.listof.R | 184 +-
spatstat-1.38-0/spatstat/R/plot.owin.R | 48
spatstat-1.38-0/spatstat/R/plot.ppp.R | 225 +-
spatstat-1.38-0/spatstat/R/pp3.R | 2
spatstat-1.38-0/spatstat/R/ppm.R | 59
spatstat-1.38-0/spatstat/R/ppmclass.R | 20
spatstat-1.38-0/spatstat/R/ppp.R | 81
spatstat-1.38-0/spatstat/R/pppmatch.R | 123 +
spatstat-1.38-0/spatstat/R/ppx.R | 4
spatstat-1.38-0/spatstat/R/predict.ppm.R | 21
spatstat-1.38-0/spatstat/R/primefactors.R | 3
spatstat-1.38-0/spatstat/R/profilepl.R | 48
spatstat-1.38-0/spatstat/R/psp.R | 98 -
spatstat-1.38-0/spatstat/R/psst.R | 21
spatstat-1.38-0/spatstat/R/psstA.R | 21
spatstat-1.38-0/spatstat/R/psstG.R | 22
spatstat-1.38-0/spatstat/R/quadclass.R | 6
spatstat-1.38-0/spatstat/R/quadratcount.R | 2
spatstat-1.38-0/spatstat/R/quadrattest.R | 83
spatstat-1.38-0/spatstat/R/quadscheme.R | 7
spatstat-1.38-0/spatstat/R/rLGCP.R | 49
spatstat-1.38-0/spatstat/R/random.R | 14
spatstat-1.38-0/spatstat/R/randomNS.R | 2
spatstat-1.38-0/spatstat/R/randommk.R | 629 +++----
spatstat-1.38-0/spatstat/R/resid4plot.R | 135 -
spatstat-1.38-0/spatstat/R/resolve.defaults.R | 47
spatstat-1.38-0/spatstat/R/rho2hat.R | 4
spatstat-1.38-0/spatstat/R/rhohat.R | 550 +++---
spatstat-1.38-0/spatstat/R/rmhcontrol.R | 3
spatstat-1.38-0/spatstat/R/rmhmodel.R | 2
spatstat-1.38-0/spatstat/R/rmhstart.R | 5
spatstat-1.38-0/spatstat/R/rotate.R | 2
spatstat-1.38-0/spatstat/R/simulatelppm.R |only
spatstat-1.38-0/spatstat/R/smooth.ppp.R | 233 +-
spatstat-1.38-0/spatstat/R/spatialcdf.R |only
spatstat-1.38-0/spatstat/R/split.ppp.R | 14
spatstat-1.38-0/spatstat/R/subset.R |only
spatstat-1.38-0/spatstat/R/summary.ppm.R | 21
spatstat-1.38-0/spatstat/R/superimpose.R | 17
spatstat-1.38-0/spatstat/R/symbolmap.R | 12
spatstat-1.38-0/spatstat/R/terse.R | 19
spatstat-1.38-0/spatstat/R/tess.R | 116 -
spatstat-1.38-0/spatstat/R/texture.R | 4
spatstat-1.38-0/spatstat/R/unique.ppp.R | 9
spatstat-1.38-0/spatstat/R/unnormdensity.R | 3
spatstat-1.38-0/spatstat/R/update.ppm.R | 153 +
spatstat-1.38-0/spatstat/R/util.R | 108 +
spatstat-1.38-0/spatstat/R/vcov.kppm.R | 54
spatstat-1.38-0/spatstat/R/vcov.ppm.R | 863 +++++-----
spatstat-1.38-0/spatstat/R/weights.R | 7
spatstat-1.38-0/spatstat/R/window.R | 52
spatstat-1.38-0/spatstat/R/wingeom.R | 50
spatstat-1.38-0/spatstat/build/vignette.rds |binary
spatstat-1.38-0/spatstat/data/amacrine.rda |binary
spatstat-1.38-0/spatstat/data/anemones.rda |binary
spatstat-1.38-0/spatstat/data/ants.rda |binary
spatstat-1.38-0/spatstat/data/bei.rda |binary
spatstat-1.38-0/spatstat/data/betacells.rda |binary
spatstat-1.38-0/spatstat/data/bramblecanes.rda |binary
spatstat-1.38-0/spatstat/data/bronzefilter.rda |binary
spatstat-1.38-0/spatstat/data/cells.rda |binary
spatstat-1.38-0/spatstat/data/chicago.rda |binary
spatstat-1.38-0/spatstat/data/chorley.rda |binary
spatstat-1.38-0/spatstat/data/clmfires.rda |binary
spatstat-1.38-0/spatstat/data/copper.rda |binary
spatstat-1.38-0/spatstat/data/datalist | 1
spatstat-1.38-0/spatstat/data/demohyper.rda |binary
spatstat-1.38-0/spatstat/data/demopat.rda |binary
spatstat-1.38-0/spatstat/data/finpines.rda |binary
spatstat-1.38-0/spatstat/data/flu.rda |binary
spatstat-1.38-0/spatstat/data/ganglia.rda |binary
spatstat-1.38-0/spatstat/data/gordon.rda |binary
spatstat-1.38-0/spatstat/data/gorillas.rda |binary
spatstat-1.38-0/spatstat/data/hamster.rda |binary
spatstat-1.38-0/spatstat/data/heather.rda |binary
spatstat-1.38-0/spatstat/data/humberside.rda |binary
spatstat-1.38-0/spatstat/data/hyytiala.rda |binary
spatstat-1.38-0/spatstat/data/japanesepines.rda |binary
spatstat-1.38-0/spatstat/data/lansing.rda |binary
spatstat-1.38-0/spatstat/data/letterR.rda |binary
spatstat-1.38-0/spatstat/data/longleaf.rda |binary
spatstat-1.38-0/spatstat/data/mucosa.rda |binary
spatstat-1.38-0/spatstat/data/murchison.rda |binary
spatstat-1.38-0/spatstat/data/nbfires.rda |binary
spatstat-1.38-0/spatstat/data/nztrees.rda |binary
spatstat-1.38-0/spatstat/data/osteo.rda |binary
spatstat-1.38-0/spatstat/data/paracou.rda |binary
spatstat-1.38-0/spatstat/data/ponderosa.rda |binary
spatstat-1.38-0/spatstat/data/pyramidal.rda |binary
spatstat-1.38-0/spatstat/data/redwood.rda |binary
spatstat-1.38-0/spatstat/data/redwoodfull.rda |binary
spatstat-1.38-0/spatstat/data/residualspaper.rda |binary
spatstat-1.38-0/spatstat/data/shapley.rda |binary
spatstat-1.38-0/spatstat/data/simba.rda |binary
spatstat-1.38-0/spatstat/data/simdat.rda |binary
spatstat-1.38-0/spatstat/data/simplenet.rda |binary
spatstat-1.38-0/spatstat/data/sporophores.rda |only
spatstat-1.38-0/spatstat/data/spruces.rda |binary
spatstat-1.38-0/spatstat/data/swedishpines.rda |binary
spatstat-1.38-0/spatstat/data/urkiola.rda |binary
spatstat-1.38-0/spatstat/data/waka.rda |binary
spatstat-1.38-0/spatstat/data/waterstriders.rda |binary
spatstat-1.38-0/spatstat/demo/data.R | 4
spatstat-1.38-0/spatstat/demo/spatstat.R | 140 +
spatstat-1.38-0/spatstat/demo/sumfun.R | 5
spatstat-1.38-0/spatstat/inst/doc/getstart.pdf |binary
spatstat-1.38-0/spatstat/inst/doc/replicated.pdf |binary
spatstat-1.38-0/spatstat/inst/doc/shapefiles.pdf |binary
spatstat-1.38-0/spatstat/inst/doc/updates.R | 10
spatstat-1.38-0/spatstat/inst/doc/updates.Rnw | 162 +
spatstat-1.38-0/spatstat/inst/doc/updates.pdf |binary
spatstat-1.38-0/spatstat/man/Extract.ppp.Rd | 2
spatstat-1.38-0/spatstat/man/Frame.Rd |only
spatstat-1.38-0/spatstat/man/Gcom.Rd | 7
spatstat-1.38-0/spatstat/man/Gres.Rd | 2
spatstat-1.38-0/spatstat/man/Kcom.Rd | 7
spatstat-1.38-0/spatstat/man/Kres.Rd | 2
spatstat-1.38-0/spatstat/man/Ksector.Rd |only
spatstat-1.38-0/spatstat/man/LambertW.Rd | 3
spatstat-1.38-0/spatstat/man/LennardJones.Rd | 8
spatstat-1.38-0/spatstat/man/Smooth.msr.Rd | 18
spatstat-1.38-0/spatstat/man/Window.Rd |only
spatstat-1.38-0/spatstat/man/WindowOnly.Rd |only
spatstat-1.38-0/spatstat/man/as.layered.Rd |only
spatstat-1.38-0/spatstat/man/as.mask.Rd | 23
spatstat-1.38-0/spatstat/man/berman.test.Rd |only
spatstat-1.38-0/spatstat/man/bw.diggle.Rd | 10
spatstat-1.38-0/spatstat/man/cdf.test.Rd |only
spatstat-1.38-0/spatstat/man/cdf.test.mppm.Rd |only
spatstat-1.38-0/spatstat/man/clarkevans.test.Rd | 16
spatstat-1.38-0/spatstat/man/closepairs.Rd | 21
spatstat-1.38-0/spatstat/man/closepairs.pp3.Rd |only
spatstat-1.38-0/spatstat/man/cut.ppp.Rd | 6
spatstat-1.38-0/spatstat/man/dclf.test.Rd | 44
spatstat-1.38-0/spatstat/man/density.ppp.Rd | 3
spatstat-1.38-0/spatstat/man/deriv.fv.Rd | 33
spatstat-1.38-0/spatstat/man/domain.Rd |only
spatstat-1.38-0/spatstat/man/duplicated.ppp.Rd | 15
spatstat-1.38-0/spatstat/man/envelope.Rd | 51
spatstat-1.38-0/spatstat/man/envelope.envelope.Rd | 1
spatstat-1.38-0/spatstat/man/envelope.lpp.Rd | 19
spatstat-1.38-0/spatstat/man/envelope.pp3.Rd | 8
spatstat-1.38-0/spatstat/man/eval.fasp.Rd | 7
spatstat-1.38-0/spatstat/man/eval.fv.Rd | 10
spatstat-1.38-0/spatstat/man/eval.im.Rd | 6
spatstat-1.38-0/spatstat/man/foo.Rd |only
spatstat-1.38-0/spatstat/man/fryplot.Rd | 24
spatstat-1.38-0/spatstat/man/fv.Rd | 10
spatstat-1.38-0/spatstat/man/grow.rectangle.Rd |only
spatstat-1.38-0/spatstat/man/harmonise.fv.Rd |only
spatstat-1.38-0/spatstat/man/hextess.Rd | 16
spatstat-1.38-0/spatstat/man/hist.im.Rd | 7
spatstat-1.38-0/spatstat/man/improve.kppm.Rd |only
spatstat-1.38-0/spatstat/man/interp.im.Rd | 6
spatstat-1.38-0/spatstat/man/ippm.Rd | 12
spatstat-1.38-0/spatstat/man/is.dppm.Rd |only
spatstat-1.38-0/spatstat/man/kppm.Rd | 78
spatstat-1.38-0/spatstat/man/layered.Rd | 9
spatstat-1.38-0/spatstat/man/lohboot.Rd | 36
spatstat-1.38-0/spatstat/man/methods.linnet.Rd | 15
spatstat-1.38-0/spatstat/man/miplot.Rd | 18
spatstat-1.38-0/spatstat/man/moribund.Rd |only
spatstat-1.38-0/spatstat/man/padimage.Rd |only
spatstat-1.38-0/spatstat/man/pairorient.Rd |only
spatstat-1.38-0/spatstat/man/pairs.im.Rd | 13
spatstat-1.38-0/spatstat/man/panel.contour.Rd |only
spatstat-1.38-0/spatstat/man/persp.im.Rd | 42
spatstat-1.38-0/spatstat/man/plot.bermantest.Rd | 19
spatstat-1.38-0/spatstat/man/plot.cdftest.Rd |only
spatstat-1.38-0/spatstat/man/plot.fv.Rd | 16
spatstat-1.38-0/spatstat/man/plot.im.Rd | 27
spatstat-1.38-0/spatstat/man/plot.layered.Rd | 4
spatstat-1.38-0/spatstat/man/plot.listof.Rd | 20
spatstat-1.38-0/spatstat/man/plot.ppp.Rd | 40
spatstat-1.38-0/spatstat/man/pool.quadrattest.Rd | 7
spatstat-1.38-0/spatstat/man/ppm.Rd | 36
spatstat-1.38-0/spatstat/man/ppm.object.Rd | 6
spatstat-1.38-0/spatstat/man/ppm.ppp.Rd | 32
spatstat-1.38-0/spatstat/man/pppdist.Rd | 410 ++--
spatstat-1.38-0/spatstat/man/predict.lppm.Rd | 9
spatstat-1.38-0/spatstat/man/predict.ppm.Rd | 123 -
spatstat-1.38-0/spatstat/man/psst.Rd | 7
spatstat-1.38-0/spatstat/man/psstA.Rd | 24
spatstat-1.38-0/spatstat/man/psstG.Rd | 9
spatstat-1.38-0/spatstat/man/quadrat.test.Rd | 59
spatstat-1.38-0/spatstat/man/quadrat.test.splitppp.Rd | 2
spatstat-1.38-0/spatstat/man/quadscheme.Rd | 2
spatstat-1.38-0/spatstat/man/rLGCP.Rd | 74
spatstat-1.38-0/spatstat/man/range.fv.Rd |only
spatstat-1.38-0/spatstat/man/raster.x.Rd | 30
spatstat-1.38-0/spatstat/man/rgbim.Rd | 12
spatstat-1.38-0/spatstat/man/rhohat.Rd | 42
spatstat-1.38-0/spatstat/man/rjitter.Rd | 2
spatstat-1.38-0/spatstat/man/rpoislpp.Rd | 1
spatstat-1.38-0/spatstat/man/simulate.lppm.Rd |only
spatstat-1.38-0/spatstat/man/simulate.ppm.Rd | 4
spatstat-1.38-0/spatstat/man/spatialcdf.Rd |only
spatstat-1.38-0/spatstat/man/spatstat-deprecated.Rd | 3
spatstat-1.38-0/spatstat/man/spatstat-internal.Rd | 126 +
spatstat-1.38-0/spatstat/man/spatstat-package.Rd | 44
spatstat-1.38-0/spatstat/man/spatstat.options.Rd | 112 +
spatstat-1.38-0/spatstat/man/split.ppp.Rd | 6
spatstat-1.38-0/spatstat/man/sporophores.Rd |only
spatstat-1.38-0/spatstat/man/subset.ppp.Rd |only
spatstat-1.38-0/spatstat/man/superimpose.Rd | 13
spatstat-1.38-0/spatstat/man/superimpose.lpp.Rd |only
spatstat-1.38-0/spatstat/man/trim.rectangle.Rd | 2
spatstat-1.38-0/spatstat/man/unique.ppp.Rd | 12
spatstat-1.38-0/spatstat/man/vcov.kppm.Rd | 26
spatstat-1.38-0/spatstat/man/volume.Rd | 14
spatstat-1.38-0/spatstat/src/auctionbf.c |only
spatstat-1.38-0/spatstat/src/close3pair.c |only
spatstat-1.38-0/spatstat/src/closefuns.h | 356 +++-
spatstat-1.38-0/spatstat/src/poly2im.c | 16
spatstat-1.38-0/spatstat/src/whist.c |only
spatstat-1.38-0/spatstat/tests/alltests.R | 169 +-
spatstat-1.38-0/spatstat/vignettes/packagesizes.txt | 2
spatstat-1.38-0/spatstat/vignettes/updates.Rnw | 162 +
303 files changed, 9650 insertions(+), 5050 deletions(-)
Title: Row-based functions for R objects.
Diff between rowr versions 1.0 dated 2014-07-23 and 1.0.1 dated 2014-08-15
Description: Rowr allows the manipulation of R objects as if they were
organized rows in a way that is familiar to people used to working with
databases. It allows more consistent and predictable output to common
functions, and generalizes a number of utility functions to to be failsafe
with any number and type of input objects.
Author: Craig Varrichio
Maintainer: Craig Varrichio
DESCRIPTION | 7 ++++---
MD5 | 9 +++++----
R/rowr.R | 40 ++++++++++++++++++++++++++++++++--------
man/as2.Rd |only
man/buffer.Rd | 3 +++
man/cbind.fill.Rd | 3 ++-
6 files changed, 46 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-10 1.0.1
2011-12-11 1.0
Title: A strong type system for R
Diff between rtype versions 0.1 dated 2014-08-02 and 0.1-1 dated 2014-08-15
Description: A strong type system for R which supports
symbol declaration and assignment with type checking
and condition checking.
Author: Kun Ren
Maintainer: Kun Ren
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
NEWS | 5 +++++
README.md | 1 +
4 files changed, 15 insertions(+), 9 deletions(-)
Title: Adaptive builder for formatted strings
Diff between rprintf versions 0.1-1 dated 2014-08-07 and 0.1-2 dated 2014-08-15
Description: A set of tools for building formatted string under various
replacement rules: C-style formatting, variable-based formatting, and
number-based formatting
Author: Kun Ren
Maintainer: Kun Ren
DESCRIPTION | 14 +++----
MD5 | 14 +++----
NEWS | 4 ++
R/internal.R | 4 +-
R/rprintf.R | 17 ++++----
R/rprintv.R | 8 ++--
README.md | 111 ++++++---------------------------------------------------
man/rprintf.Rd | 6 ++-
8 files changed, 52 insertions(+), 126 deletions(-)
Title: A set of tools for working with list objects
Diff between rlist versions 0.3 dated 2014-08-07 and 0.3-1 dated 2014-08-15
Description: A set of tools for working with lists as dataset,
including filtering, mapping, grouping, sorting, updating,
searching, and many other functions. It recommends functional
programming and collection pipeline in list operations.
Author: Kun Ren
Maintainer: Kun Ren
DESCRIPTION | 12 +++++-----
MD5 | 33 +++++++++++++++------------
NAMESPACE | 1
NEWS | 7 +++++
R/List.R | 33 ++++++++++++---------------
R/equal.R | 8 +++++-
R/functions.R | 45 +++++++-------------------------------
R/internal.R | 29 ++++++++++++------------
R/lambda.R |only
R/list.any.R | 2 -
R/list.search.R | 2 -
R/list.subset.R |only
README.md | 2 -
man/List.Rd | 9 ++++---
man/equal.Rd | 5 +---
man/list.subset.Rd |only
tests/testthat/test-basic.R | 9 +++++++
tests/testthat/test-list.search.R | 14 +++++------
tests/testthat/test-subset.list.R | 2 -
19 files changed, 104 insertions(+), 109 deletions(-)
Title: High-performance pipeline operator and Pipe function
Diff between pipeR versions 0.4 dated 2014-08-08 and 0.4-1 dated 2014-08-15
Description: Provides high-performance pipeline operator and light-weight Pipe
function based on a set of simple and intuitive rules, making command
chaining definite, readable and fast.
Author: Kun Ren
Maintainer: Kun Ren
pipeR-0.4-1/pipeR/DESCRIPTION | 22 -
pipeR-0.4-1/pipeR/MD5 | 36 +-
pipeR-0.4-1/pipeR/NAMESPACE | 2
pipeR-0.4-1/pipeR/NEWS | 7
pipeR-0.4-1/pipeR/R/functions.R | 52 ++++
pipeR-0.4-1/pipeR/R/pipe.R | 84 ++++--
pipeR-0.4-1/pipeR/R/pipeR.R | 22 +
pipeR-0.4-1/pipeR/README.md | 123 +++++-----
pipeR-0.4-1/pipeR/build/vignette.rds |binary
pipeR-0.4-1/pipeR/inst/doc/Examples.R | 61 ----
pipeR-0.4-1/pipeR/inst/doc/Examples.html | 46 ---
pipeR-0.4-1/pipeR/inst/doc/Introduction.html | 60 ++++
pipeR-0.4-1/pipeR/inst/doc/Performance.R | 12
pipeR-0.4-1/pipeR/inst/doc/Performance.html | 26 +-
pipeR-0.4-1/pipeR/man/Pipe.Rd | 33 ++
pipeR-0.4-1/pipeR/man/grapes-greater-than-greater-than-grapes.Rd | 23 +
pipeR-0.4-1/pipeR/tests/testthat/test1-operator.R |only
pipeR-0.4-1/pipeR/tests/testthat/test2-Pipe.R |only
pipeR-0.4-1/pipeR/tests/testthat/test3-Performance.R |only
pipeR-0.4/pipeR/man/fun.Rd |only
pipeR-0.4/pipeR/tests/testthat/test-Pipe.R |only
pipeR-0.4/pipeR/tests/testthat/test-operator.R |only
22 files changed, 348 insertions(+), 261 deletions(-)
Title: Panel Data Analysis with Heterogeneous Time Trends
Diff between phtt versions 3.1.1 dated 2014-04-23 and 3.1.2 dated 2014-08-15
Description: The package provides estimation procedures for panel data with large dimensions n, T, and general forms of unobservable heterogeneous effects. Particularly, the estimation procedures are those of Bai (2009) and Kneip, Sickles, and Song (2012), which complement one another very well: both models assume the unobservable heterogeneous effects to have a factor structure. The method of Bai (2009) assumes that the factors are stationary, whereas the method of Kneip et al. (2012) allows the factors to be non-stationary. Additionally, the 'phtt' package provides a wide range of dimensionality criteria in order to estimate the number of the unobserved factors simultaneously with the remaining model parameters.
Author: Oualid Bada, Dominik Liebl
Maintainer: Dominik Liebl
phtt-3.1.1/phtt/inst/doc/phtt_Guide.R |only
phtt-3.1.1/phtt/inst/doc/phtt_Guide.Snw |only
phtt-3.1.1/phtt/inst/doc/phtt_Guide.pdf |only
phtt-3.1.1/phtt/vignettes/phtt_Guide.Snw |only
phtt-3.1.1/phtt/vignettes/phtt_Guide.bib |only
phtt-3.1.2/phtt/DESCRIPTION | 8 ++++----
phtt-3.1.2/phtt/MD5 | 18 +++++++++---------
phtt-3.1.2/phtt/R/checkSpecification.R | 4 ++--
phtt-3.1.2/phtt/build/vignette.rds |binary
phtt-3.1.2/phtt/inst/CITATION | 25 +++++++++++++++++++------
phtt-3.1.2/phtt/inst/doc/phtt.R |only
phtt-3.1.2/phtt/inst/doc/phtt.Snw |only
phtt-3.1.2/phtt/inst/doc/phtt.pdf |only
phtt-3.1.2/phtt/vignettes/phtt.Snw |only
phtt-3.1.2/phtt/vignettes/phtt.bib |only
15 files changed, 34 insertions(+), 21 deletions(-)
Title: Path diagrams and visual analysis of various SEM packages'
output
Diff between semPlot versions 1.0.0 dated 2014-02-11 and 1.0.1 dated 2014-08-15
Description: Path diagrams and visual analysis of various SEM packages' output
Author: Sacha Epskamp
Maintainer: Sacha Epskamp
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
NEWS | 3 +++
R/glm.R | 7 ++++++-
man/semPaths.Rd | 2 +-
5 files changed, 18 insertions(+), 10 deletions(-)
Title: Fast and versatile argument checks
Diff between checkmate versions 1.2 dated 2014-07-21 and 1.3 dated 2014-08-15
Description: Tests and assertions to perform frequent argument checks. A
substantial part of the package was written in C to minimize any worries
about execution time overhead.
Author: Michel Lang
Maintainer: Michel Lang
DESCRIPTION | 6 -
MD5 | 164 +++++++++++++++++-----------------
NEWS | 6 +
R/allMissing.r | 6 -
R/anyMissing.r | 6 -
R/asInteger.r | 6 -
R/assert.r | 8 +
R/checkAccess.r | 8 -
R/checkArray.r | 2
R/checkAtomic.r | 2
R/checkAtomicVector.r | 2
R/checkCharacter.r | 6 -
R/checkChoice.r | 2
R/checkClass.r | 18 +--
R/checkComplex.r | 4
R/checkCount.r | 4
R/checkDataFrame.r | 4
R/checkDirectory.r | 8 -
R/checkEnvironment.r | 6 -
R/checkFactor.r | 6 -
R/checkFile.r | 8 -
R/checkFlag.r | 4
R/checkFunction.r | 4
R/checkInt.r | 4
R/checkInteger.r | 6 -
R/checkIntegerish.r | 6 -
R/checkList.r | 4
R/checkLogical.r | 4
R/checkMatrix.r | 6 -
R/checkNamed.r | 8 -
R/checkNull.r | 4
R/checkNumber.r | 4
R/checkNumeric.r | 4
R/checkPathForOutput.r | 22 +++-
R/checkScalar.r | 4
R/checkScalarNA.r | 6 -
R/checkSetEqual.r | 24 +++-
R/checkString.r | 4
R/checkSubset.r | 4
R/checkVector.r | 2
R/qassert.r | 30 +++---
R/qassertr.r | 4
man/anyMissing.Rd | 8 -
man/asInteger.Rd | 4
man/assert.Rd | 6 +
man/checkAccess.Rd | 6 -
man/checkCharacter.Rd | 4
man/checkClass.Rd | 16 +--
man/checkComplex.Rd | 2
man/checkCount.Rd | 2
man/checkDataFrame.Rd | 2
man/checkDirectory.Rd | 6 -
man/checkEnvironment.Rd | 4
man/checkFactor.Rd | 4
man/checkFile.Rd | 6 -
man/checkFlag.Rd | 2
man/checkFunction.Rd | 2
man/checkInt.Rd | 2
man/checkInteger.Rd | 4
man/checkIntegerish.Rd | 4
man/checkList.Rd | 2
man/checkLogical.Rd | 2
man/checkMatrix.Rd | 4
man/checkNamed.Rd | 6 -
man/checkNull.Rd | 2
man/checkNumber.Rd | 2
man/checkNumeric.Rd | 2
man/checkPathForOutput.Rd | 11 +-
man/checkScalar.Rd | 2
man/checkScalarNA.Rd | 4
man/checkSetEqual.Rd | 11 +-
man/checkString.Rd | 2
man/checkSubset.Rd | 2
man/qassert.Rd | 28 ++---
man/qassertr.Rd | 2
src/checks.c | 5 -
src/helper.c |only
src/helper.h |only
src/rules.c | 3
tests/testthat/test_checkFilesystem.r | 4
tests/testthat/test_checkList.r | 1
tests/testthat/test_checkNumber.r | 2
tests/testthat/test_checkSetEqual.r | 12 ++
tests/testthat/test_qtest.r | 7 +
84 files changed, 354 insertions(+), 286 deletions(-)
Title: This package creates variance dispersion graphs and fraction of
design space plots for response surface designs
Diff between Vdgraph versions 2.1-3 dated 2013-01-29 and 2.2-1 dated 2014-08-15
Description: This package calls a modification of the published FORTRAN code for producing variance dispersion graphs. For more details on variance dispersion graphs see "A Computer Program for Generating Variance Dispersion Graphs" by G. Vining, Journal of Quality Technology, Vol. 25 No. 1 January 1993.
Author: John Lawson
Maintainer: John Lawson
DESCRIPTION | 23 ++++++++++-------------
MD5 | 42 ++++++++++++++++++++++++------------------
NAMESPACE | 4 +++-
R/Compare2FDS.R |only
R/FDSPlot.R |only
R/mx.R |only
data/D310.rda |binary
data/D311A.rda |binary
data/D311B.rda |binary
data/D416A.rda |binary
data/D416B.rda |binary
data/D416C.rda |binary
data/D628A.rda |binary
data/Hex2.rda |binary
data/SCDDL5.rda |binary
data/SCDH2.rda |binary
data/SCDH3.rda |binary
data/SCDH4.rda |binary
data/SCDH5.rda |binary
data/SCDH6.rda |binary
man/Compare2FDS.Rd |only
man/Compare2Vdg.Rd | 2 +-
man/FDSPlot.Rd |only
man/Vdgraph-package.Rd | 20 ++++++++++++++------
man/mx.Rd |only
25 files changed, 52 insertions(+), 39 deletions(-)
Title: analysis of complex survey samples
Diff between survey versions 3.30-2 dated 2014-08-14 and 3.30-3 dated 2014-08-15
Description: Summary statistics, two-sample tests, rank tests, generalised linear models, cumulative link models, Cox models, loglinear models, and general maximum pseudolikelihood estimation for multistage stratified, cluster-sampled, unequally weighted survey samples. Variances by Taylor series linearisation or replicate weights. Post-stratification, calibration, and raking. Two-phase subsampling designs. Graphics. PPS sampling without replacement. Principal components, factor analysis.
Author: Thomas Lumley
Maintainer: "Thomas Lumley"
DESCRIPTION | 9 +++++----
MD5 | 10 +++++-----
NAMESPACE | 3 +--
R/surveyby.R | 54 +++++++++++++++++++++++++++---------------------------
R/surveygraph.R | 55 +++++++++++++++++--------------------------------------
R/surveyrep.R | 26 ++++++++++++++++++++------
6 files changed, 75 insertions(+), 82 deletions(-)
Title: Straightforward BibTeX and BibLaTeX Bibliography Management
Diff between RefManageR versions 0.8.3 dated 2014-08-01 and 0.8.32 dated 2014-08-15
Description: RefManageR provides tools for importing and working with
bibliographic references. It greatly enhances the bibentry class by
providing a class BibEntry which stores BibTeX and BibLaTeX references,
supports UTF-8 encoding, and can be easily searched by any field, by date
ranges, and by various formats for name lists (author by last names,
translator by full names, etc.). Entries can be updated, combined, sorted,
printed in a number of styles, and exported. BibTeX and BibLaTeX .bib files
can be read into R and converted to BibEntry objects. Interfaces to NCBI's
Entrez, CrossRef, and Zotero are provided for importing references and
references can be created from locally stored PDFs using Poppler. Includes
functions for citing and generating a bibliography with hyperlinks for
documents prepared with RMarkdown or RHTML.
Author: Mathew W. McLean [aut, cre]
Maintainer: Mathew W. McLean
DESCRIPTION | 8 +-
MD5 | 34 ++++----
NAMESPACE | 1
R/GetBibEntryWithDOI.R | 28 ++++---
R/ReadCrossRef.R | 12 +--
R/ReadGS.R | 61 ++++++++--------
R/ReadPubMed.R | 174 ++++++++++++++++++++++++----------------------
R/ReadZotero.R | 72 ++++++++++---------
R/format.R | 2
inst/NEWS | 13 +++
inst/doc/manual.pdf |binary
man/GetBibEntryWithDOI.Rd | 3
man/GetPubMedByID.Rd | 9 +-
man/GetPubMedRelated.Rd | 14 ++-
man/LookupPubMedID.Rd | 8 +-
man/ReadCrossRef.Rd | 10 +-
man/ReadGS.Rd | 15 ++-
man/ReadPubMed.Rd | 6 +
18 files changed, 263 insertions(+), 207 deletions(-)
Title: Functions, data and code for count data.
Diff between COUNT versions 1.3.1 dated 2014-07-22 and 1.3.2 dated 2014-08-15
Description: Functions, data and code for Hilbe, J.M. 2011. Negative Binomial Regression, 2-nd Edition (Cambridge University Press) and Hilbe, J.M. 2014. Modeling Count Data (Cambridge University Press).
Author: Joseph M Hilbe
Maintainer: Andrew Robinson
DESCRIPTION | 8 ++++----
MD5 | 4 ++--
R/modelfit.r | 7 ++++---
3 files changed, 10 insertions(+), 9 deletions(-)
Title: Classification and Regression Training
Diff between caret versions 6.0-30 dated 2014-06-04 and 6.0-34 dated 2014-08-15
Description: Misc functions for training and plotting classification and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer
and the R Core Team
Maintainer: Max Kuhn
DESCRIPTION | 8
MD5 | 74 +++----
NAMESPACE | 19 +
R/bag.R | 5
R/confusionMatrix.R | 9
R/createModel.R | 4
R/extractPrediction.R | 22 --
R/ggplot.R | 24 +-
R/heldout.R |only
R/misc.R | 30 +++
R/plot.train.R | 15 +
R/preProcess.R | 18 +
R/print.train.R | 409 +++++++++++++++++++-----------------------
R/reg_sims.R |only
R/resamples.R | 91 ++++-----
R/rfe.R | 22 ++
R/train.default.R | 34 ++-
inst/NEWS.Rd | 38 +++
inst/doc/caret.pdf |binary
inst/models/models.RData |binary
man/caret-internal.Rd | 3
man/createDataPartition.Rd | 2
man/diff.resamples.Rd | 2
man/lattice.diff.resamples.Rd | 2
man/lattice.resamples.Rd | 2
man/plot.train.Rd | 3
man/prcomp.resamples.Rd | 2
man/preProcess.Rd | 5
man/print.train.Rd | 5
man/resamples.Rd | 2
man/rfe.Rd | 12 -
man/rfeControl.Rd | 4
man/sbf.Rd | 2
man/sbfControl.Rd | 4
man/sbfFunctions.Rd | 2
man/segmentationData.Rd | 2
man/selection.Rd | 2
man/train.Rd | 21 +-
man/twoClassSim.Rd | 73 ++++++-
39 files changed, 587 insertions(+), 385 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-28 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-30 0.2.8
2014-01-07 0.2.7
2011-05-23 0.2.6
2010-03-01 0.2.4
2008-08-20 0.2.2
Title: Package for ttf2pt1 program
Description: This package contains the program ttf2pt1, for use with the
extrafont package. This product includes software developed by the TTF2PT1
Project and its contributors.
Author: Winston Chang,
Andrew Weeks,
Frank M. Siegert,
Mark Heath,
Thomas Henlick,
Sergey Babkin,
Turgut Uyar,
Rihardas Hepas,
Szalay Tamas,
Johan Vromans,
Petr Titera,
Lei Wang,
Chen Xiangyang,
Zvezdan Petkovic,
Rigel,
I. Lee Hetherington
Maintainer: ORPHANED
Diff between Rttf2pt1 versions 1.3.1 dated 2014-07-03 and 1.3.2 dated 2014-08-15
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- src/Makefile | 10 +--------- 3 files changed, 8 insertions(+), 15 deletions(-)