Sun, 24 Aug 2014

Package Rd2roxygen updated to version 1.5 with previous version 1.4 dated 2013-12-06

Title: Convert Rd to roxygen documentation and utilities to improve documentation
Description: Functions to convert Rd to roxygen documentation. It can parse an Rd file to a list, create the roxygen documentation and update the original R script (e.g. the one containing the definition of the function) accordingly. This package also provides utilities which can help developers build packages using roxygen more easily. The formatR package can be used to reformat the R code in the examples sections so that the code will be more readable.
Author: Hadley Wickham [aut], Yihui Xie [aut, cre]
Maintainer: Yihui Xie

Diff between Rd2roxygen versions 1.4 dated 2013-12-06 and 1.5 dated 2014-08-24

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Package formatR updated to version 1.0 with previous version 0.10 dated 2013-10-26

Title: Format R Code Automatically
Description: This package provides a function tidy_source() to format R source code. Spaces and indent will be added to the code automatically, and comments will be preserved under certain conditions, so that R code will be more human-readable and tidy. There is also a Shiny app as a user interface in this package (see tidy_app()).
Author: Yihui Xie
Maintainer: Yihui Xie

Diff between formatR versions 0.10 dated 2013-10-26 and 1.0 dated 2014-08-24

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New package dunn.test with initial version 1.1.0
Package: dunn.test
Version: 1.1.0
Date: 2014-08-23
Title: Dunn's test of multiple comparisons using rank sums
Author: Alexis Dinno
Maintainer: Alexis Dinno
Description: dunn.test computes Dunn's test (1964) for stochastic dominance and reports the results among multiple pairwise comparisons after a Kruskal-Wallis test for stochastic dominance among k groups (Kruskal and Wallis, 1952). The interpretation of stochastic dominance requires an assumption that the CDF of one group does not cross the CDF of the other. dunn.test makes k(k-1)/2 multiple pairwise comparisons based on Dunn's z-test-statistic approximations to the actual rank statistics. The null hypothesis for each pairwise comparison is that the probability of observing a randomly selected value from the first group that is larger than a randomly selected value from the second group equals one half; this null hypothesis corresponds to that of the Wilcoxon-Mann-Whitney rank-sum test. Like the rank-sum test, if the data can be assumed to be continuous, and the distributions are assumed identical except for a difference in location, Dunn's test may be understood as a test for median difference. dunn.test accounts for tied ranks.
License: GPL-2
LazyData: no
Encoding: UTF-8
Packaged: 2014-08-24 22:12:01 UTC; Alexis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-25 01:00:40

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Package sandwich updated to version 2.3-2 with previous version 2.3-1 dated 2014-07-20

Title: Robust Covariance Matrix Estimators
Description: Model-robust standard error estimators for cross-sectional, time series, and longitudinal data.
Author: Thomas Lumley [aut], Achim Zeileis [aut, cre]
Maintainer: Achim Zeileis

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Package hypervolume updated to version 1.0.2 with previous version 1.0.1 dated 2014-07-08

Title: High-dimensional kernel density estimation and geometry operations.
Description: Estimates the shape and volume of high-dimensional objects and performs set operations: intersection / overlap, union, unique components, inclusion test, and non-convex feature detection. Can measure the n-dimensional ecological hypervolume and perform species distribution modeling.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder

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Package caret updated to version 6.0-35 with previous version 6.0-34 dated 2014-08-15

Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer and the R Core Team
Maintainer: Max Kuhn

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Package Rcmdr updated to version 2.1-0 with previous version 2.0-4 dated 2014-03-28

Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre], Milan Bouchet-Valat [aut], Liviu Andronic [ctb], Michael Ash [ctb], Theophilius Boye [ctb], Stefano Calza [ctb], Andy Chang [ctb], Philippe Grosjean [ctb], Richard Heiberger [ctb], Kosar Karimi Pour [ctb], G. Jay Kerns [ctb], Renaud Lancelot [ctb], Matthieu Lesnoff [ctb], Uwe Ligges [ctb], Samir Messad [ctb], Martin Maechler [ctb], Robert Muenchen [ctb], Duncan Murdoch [ctb], Erich Neuwirth [ctb], Dan Putler [ctb], Brian Ripley [ctb], Miroslav Ristic [ctb], Peter Wolf [ctb], Kevin Wright [ctb]
Maintainer: John Fox

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Package EMP updated to version 1.0.2 with previous version 1.0.1 dated 2014-04-15

Title: Expected Maximum Profit for Credit Scoring.
Description: Functions for estimating EMP (Expected Maximum Profit Measure) in Credit Scoring, according to Verbraken et al (2014).
Author: Cristian Bravo and Thomas Verbraken
Maintainer: Cristian Bravo

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Package rARPACK updated to version 0.6-0 with previous version 0.5-0 dated 2014-01-19

Title: R wrapper of ARPACK for large scale eigenvalue/vector problems, on both dense and sparse matrices
Description: rARPACK is an R wrapper of the ARPACK library (http://www.caam.rice.edu/software/ARPACK/) to solve large scale eigenvalue/vector problems. It is typically used to compute a few eigenvalues/vectors of an n by n matrix, e.g., the k largest eigenvalues, which is usually more efficient than eigen() if k << n. This package provides the eigs() function which does the similar job as in Matlab, Octave, Python SciPy and Julia. It also provides the svds() function to calculate the largest k singular values and corresponding singular vectors of a real matrix. Matrices can be given in either dense or sparse form.
Author: Yixuan Qiu and authors of the ARPACK library. See file AUTHORS for details.
Maintainer: Yixuan Qiu

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Package markdown updated to version 0.7.4 with previous version 0.7.2 dated 2014-07-25

Title: Markdown rendering for R
Description: Markdown is a plain-text formatting syntax that can be converted to XHTML or other formats. This package provides R bindings to the Sundown markdown rendering library.
Author: JJ Allaire, Jeffrey Horner, Vicent Marti, and Natacha Porte
Maintainer: Yihui Xie

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 inst/doc/markdown-examples.html |   36 +++++++++++++++++++++++++-----------
 inst/doc/markdown-output.R      |    4 ++--
 inst/doc/markdown-output.html   |   36 +++++++++++++++++++++++++-----------
 inst/examples/HTMLOptions.R     |    4 ++--
 inst/resources/markdown.css     |    4 +++-
 inst/resources/markdown.html    |   12 ++++++++++++
 inst/resources/mathjax.html     |    2 +-
 man/markdownHTMLOptions.Rd      |   17 ++++++++---------
 man/renderMarkdown.Rd           |    2 +-
 tests/tests.Rout.save           |   20 ++++++++++----------
 16 files changed, 136 insertions(+), 76 deletions(-)

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Package StereoMorph updated to version 1.2 with previous version 1.1 dated 2014-07-18

Title: Stereo Camera Calibration and Reconstruction
Description: StereoMorph provides functions for the collection of 3D points and curves using a stereo camera setup.
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen

Diff between StereoMorph versions 1.1 dated 2014-07-18 and 1.2 dated 2014-08-24

 StereoMorph-1.1/StereoMorph/R/meanCheckerboardSize.R                      |only
 StereoMorph-1.1/StereoMorph/man/meanCheckerboardSize.Rd                   |only
 StereoMorph-1.2/StereoMorph/DESCRIPTION                                   |   18 
 StereoMorph-1.2/StereoMorph/MD5                                           |   67 +-
 StereoMorph-1.2/StereoMorph/NAMESPACE                                     |    8 
 StereoMorph-1.2/StereoMorph/R/RcppExports.R                               |only
 StereoMorph-1.2/StereoMorph/R/digitizeImage.R                             |   16 
 StereoMorph-1.2/StereoMorph/R/dltCalibrateCameras.R                       |  141 +++-
 StereoMorph-1.2/StereoMorph/R/dltMatchCurvePoints.R                       |  302 ++++++++--
 StereoMorph-1.2/StereoMorph/R/dltTestCalibration.R                        |    7 
 StereoMorph-1.2/StereoMorph/R/findCheckerboardCorners.R                   |only
 StereoMorph-1.2/StereoMorph/R/gridPointsFit.R                             |only
 StereoMorph-1.2/StereoMorph/R/measureCheckerboardSize.R                   |only
 StereoMorph-1.2/StereoMorph/R/readCheckerboardsToArray.R                  |   19 
 StereoMorph-1.2/StereoMorph/R/resampleGridImagePoints.R                   |   43 +
 StereoMorph-1.2/StereoMorph/inst/extdata/Checkerboards                    |only
 StereoMorph-1.2/StereoMorph/inst/extdata/apps/digitizeImage/www/help.html |    2 
 StereoMorph-1.2/StereoMorph/inst/extdata/ruler_21_14_200(6).txt           |    1 
 StereoMorph-1.2/StereoMorph/inst/extdata/ruler_21_14_200(9).txt           |    1 
 StereoMorph-1.2/StereoMorph/man/StereoMorph-package.Rd                    |   24 
 StereoMorph-1.2/StereoMorph/man/digitizeImage.Rd                          |    2 
 StereoMorph-1.2/StereoMorph/man/dltCalibrateCameras.Rd                    |   24 
 StereoMorph-1.2/StereoMorph/man/dltCoefficients.Rd                        |    2 
 StereoMorph-1.2/StereoMorph/man/dltMatchCurvePoints.Rd                    |   12 
 StereoMorph-1.2/StereoMorph/man/dltTestCalibration.Rd                     |   14 
 StereoMorph-1.2/StereoMorph/man/drawCheckerboard.Rd                       |    5 
 StereoMorph-1.2/StereoMorph/man/findCheckerboardCorners.Rd                |only
 StereoMorph-1.2/StereoMorph/man/gridPointsFit.Rd                          |only
 StereoMorph-1.2/StereoMorph/man/measureCheckerboardSize.Rd                |only
 StereoMorph-1.2/StereoMorph/man/pointsAtEvenSpacing.Rd                    |   12 
 StereoMorph-1.2/StereoMorph/man/readCheckerboardsToArray.Rd               |   27 
 StereoMorph-1.2/StereoMorph/man/resampleGridImagePoints.Rd                |   11 
 StereoMorph-1.2/StereoMorph/src                                           |only
 33 files changed, 578 insertions(+), 180 deletions(-)

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New package CosmoPhotoz with initial version 0.1
Package: CosmoPhotoz
Type: Package
Title: Photometric redshift estimation using generalized linear models
Version: 0.1
Date: 2014-08-20
Author: Rafael S. de Souza, Alberto Krone-Martins, Jonathan Elliott, Joseph Hilbe
Maintainer: Rafael S. de Souza
Description: User-friendly interfaces to perform fast and reliable photometric redshift estimation. The code makes use of generalized linear models and can adopt gamma or inverse gaussian families, either from a frequentist or a Bayesian perspective. The code additionally provides a Shiny application providing a simple user interface.
Depends: R (>= 3.0)
License: GPL (>= 3)
Imports: ggplot2, ggthemes, arm, COUNT, gridExtra, pcaPP, mvtnorm, shiny
NeedsCompilation: no
Packaged: 2014-08-23 22:48:52 UTC; rafael
Repository: CRAN
Date/Publication: 2014-08-24 07:22:40

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