More information about testthatsomemore at CRAN
Permanent link
Title: Tools for Nanoparticle Simulation and Calculation of PDF and
Total Scattering Structure Function
Diff between nanop versions 2.0-3 dated 2014-05-23 and 2.0-4 dated 2014-08-25
Description: This software package implements functions to simulate spherical, ellipsoid and cubic polyatomic nanoparticles with arbitrary crystal structures and to calculate the associated pair-distribution function and X-ray/neutron total-scattering signals. It also provides a target function that can be used for simultaneous fitting of small- and wide-angle total scattering data in real and reciprocal spaces. The target function can be generated either as a sum of weighted residuals for individual datasets or as a vector of residuals suitable for optimization using multi-criteria algorithms (e.g. Pareto methods).
Author: Anton Gagin, Katharine Mullen, Igor Levin
Maintainer: Anton Gagin
nanop-2.0-3/nanop/data |only
nanop-2.0-4/nanop/DESCRIPTION | 11 +++++------
nanop-2.0-4/nanop/MD5 | 15 ++++++++-------
nanop-2.0-4/nanop/NEWS | 4 ++++
nanop-2.0-4/nanop/R/getScatterFactor.R | 3 +++
nanop-2.0-4/nanop/R/rss.R | 16 ++++++++++++----
nanop-2.0-4/nanop/inst |only
nanop-2.0-4/nanop/man/calcPDF.Rd | 16 ++++++++--------
nanop-2.0-4/nanop/man/rss.Rd | 12 ++++++------
9 files changed, 46 insertions(+), 31 deletions(-)
Title: Graphical Analysis of Variance
Diff between granova versions 2.0.1 dated 2014-08-21 and 2.1 dated 2014-08-25
Description: This small collection of functions provides what we call elemental graphics for display of anova
results. The term elemental derives from the fact that each function is aimed at construction of
graphical displays that afford direct visualizations of data with respect to the fundamental
questions that drive the particular anova methods. The two main functions are granova.1w
(a graphic for one way anova) and granova.2w (a corresponding graphic for two way anova). These
functions were written to display data for any number of groups, regardless of their sizes
(however, very large data sets or numbers of groups can be problematic). For these two functions
a specialized approach is used to construct data-based contrast vectors for which anova data are
displayed. The result is that the graphics use straight lines, and when appropriate flat surfaces,
to facilitate clear interpretations while being faithful to the standard effect tests in anova.
The graphic results are complementary to standard summary tables for these two basic kinds of
analysis of variance; numerical summary results of analyses are also provided as side effects.
Two additional functions are granova.ds (for comparing two dependent samples), and granova.contr
(which provides graphic displays for a priori contrasts). All functions provide relevant
numerical results to supplement the graphic displays of anova data.
The graphics based on these functions should be especially helpful for learning how the methods have
been applied to answer the question(s) posed. This means they can be
particularly helpful for students and non-statistician analysts. But these methods should be
quite generally helpful for work-a-day applications of all kinds, as they can help to identify
outliers, clusters or patterns, as well as highlight the role of non-linear transformations of data. In the case
of granova.1w and granova.ds especially, several arguments are provided to facilitate flexibility
in the construction of graphics that accommodate diverse features of data, according to their
corresponding display requirements. See the help files for individual functions.
Author: Robert M. Pruzek
Maintainer: James E. Helmreich
DESCRIPTION | 82 ++++-------
MD5 | 8 -
NAMESPACE | 2
R/granova.1w.R | 398 ++++++++++++++++++++++++++++-----------------------------
R/granova.2w.R | 194 ++++++++++++++-------------
5 files changed, 334 insertions(+), 350 deletions(-)
Title: Simulation and Inference for Stochastic Differential Equations
Diff between sde versions 2.0.10 dated 2009-08-06 and 2.0.13 dated 2014-08-25
Description: Companion package to the book Simulation and Inference for
Stochastic Differential Equations With R Examples, ISBN
978-0-387-75838-1, Springer, NY.
Author: Stefano Maria Iacus
Maintainer: Stefano Maria Iacus
DESCRIPTION | 11 +++++------
MD5 |only
NAMESPACE | 6 ++++++
R/MOdist.R | 1 -
R/linear.mart.ef.R | 2 +-
R/sde.sim.R | 1 -
R/zzz.R | 23 +++++++++++++++--------
build |only
inst/doc/changes.txt | 2 ++
inst/doc/sde.errata.pdf |binary
man/MOdist.Rd | 2 ++
man/sdeAIC.Rd | 2 ++
man/sdeDiv.Rd | 18 ++++++++++++------
vignettes |only
14 files changed, 45 insertions(+), 23 deletions(-)
Title: Visualization methods for the raster package
Diff between rasterVis versions 0.28 dated 2014-03-25 and 0.31 dated 2014-08-25
Description: The raster package defines classes and methods for spatial raster data access and manipulation. The rasterVis package complements raster providing a set of methods for enhanced visualization and interaction.
Author: Oscar Perpinan Lamigueiro [cre, aut],
Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro
rasterVis-0.28/rasterVis/LICENSE |only
rasterVis-0.31/rasterVis/ChangeLog | 68 ++++---
rasterVis-0.31/rasterVis/DESCRIPTION | 13 -
rasterVis-0.31/rasterVis/MD5 | 24 +-
rasterVis-0.31/rasterVis/NAMESPACE | 17 +
rasterVis-0.31/rasterVis/R/contourplot.R | 52 ++---
rasterVis-0.31/rasterVis/R/grid.R | 122 ++++++++++---
rasterVis-0.31/rasterVis/R/interactRaster.R | 67 +++----
rasterVis-0.31/rasterVis/R/levelplot.R | 193 +++++++++++-----------
rasterVis-0.31/rasterVis/R/vectorplot.R | 124 ++++++++------
rasterVis-0.31/rasterVis/README.md | 6
rasterVis-0.31/rasterVis/inst |only
rasterVis-0.31/rasterVis/man/levelplot-methods.Rd | 20 +-
rasterVis-0.31/rasterVis/man/vectorplot.Rd | 7
14 files changed, 417 insertions(+), 296 deletions(-)
Title: Interface to Unidata netCDF data files
Diff between ncdf versions 1.6.7 dated 2014-06-16 and 1.6.8 dated 2014-08-25
Description: This package provides a high-level R interface to
Unidata's netCDF data files, which are portable across
platforms and include metadata information in addition to the
data sets. Using this package netCDF files can be opened and
data sets read in easily. It is also easy to create new netCDF
dimensions, variables, and files, or manipulate existing netCDF
files. This interface provides considerably more functionality
than the old "netCDF" package for R, and is not compatible with
the old "netCDF" package for R. Release 1.2 (2005-01-24) adds
better support for character variables, and miscellaneous bug
fixes. Release 1.3 (2005-03-27) is for miscellaneous bug
fixes, and improves the documentation. Release 1.4
(2005-06-27) improves the efficiency, and adds small bug fixes.
Release 1.5 (2006-02-27) adds support for byte variables, plus
small bug fixes. Release 1.6 (2006-06-19) adds various bug
fixes, plus support for making dimensions WITHOUT dimvars
(coordinate variables), although I think this is a bad idea in
general. ALSO, the default behavior for put.var.ncdf with
unlimited variables and NO specified start and count parameters
has changed! Before, the default was to append to the end of
the existing variable. Now, the default is to assume a start
of 1 along each dimension, and a count of the current length of
each dimension. This really can be ambiguous when using an
unlimited dimension. I always specify both start and count when
writing to a variable with an unlimited dimension, and suggest
you do as well. I may require this in a future release, as it
seems to cause people problems.
Author: David Pierce
Maintainer: Brian Ripley
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/ncdf.R | 6 ++----
3 files changed, 7 insertions(+), 9 deletions(-)
Title: A graphical user interface for the MuToss Project
Diff between mutossGUI versions 0.1-8 dated 2013-04-05 and 0.1-9 dated 2014-08-25
Description: A graphical user interface for the MuToss Project
Author: MuToss Coding Team (Berlin 2010), Gilles Blanchard, Thorsten Dickhaus,
Niklas Hack, Frank Konietschke, Kornelius Rohmeyer,
Jonathan Rosenblatt, Marsel Scheer, Wiebke Werft
Maintainer: Kornelius Rohmeyer
mutossGUI-0.1-8/mutossGUI/inst/build.xml |only
mutossGUI-0.1-8/mutossGUI/inst/java-src |only
mutossGUI-0.1-9/mutossGUI/DESCRIPTION | 17 +-
mutossGUI-0.1-9/mutossGUI/MD5 | 218 +++++++++++++-------------
mutossGUI-0.1-9/mutossGUI/NAMESPACE | 15 +
mutossGUI-0.1-9/mutossGUI/R/helperfunctions.R | 96 +++++------
mutossGUI-0.1-9/mutossGUI/R/onLoad.R | 85 ++++------
mutossGUI-0.1-9/mutossGUI/java |only
8 files changed, 212 insertions(+), 219 deletions(-)
Title: Inference of trait associations with SNP haplotypes and other
attributes using the EM Algorithm
Diff between hapassoc versions 1.2-6 dated 2012-09-22 and 1.2-7 dated 2014-08-25
Description: The following R functions are used for inference of trait
associations with haplotypes and other covariates in
generalized linear models. The functions are developed
primarily for data collected in cohort or cross-sectional
studies. They can accommodate uncertain haplotype phase and
handle missing genotypes at some SNPs.
Author: K. Burkett
Maintainer: K. Burkett
hapassoc-1.2-6/hapassoc/inst/doc/burkett_biblio.bib |only
hapassoc-1.2-6/hapassoc/inst/doc/jsslogo.jpg |only
hapassoc-1.2-7/hapassoc/DESCRIPTION | 7 ++++---
hapassoc-1.2-7/hapassoc/MD5 | 12 +++++++-----
hapassoc-1.2-7/hapassoc/inst/ChangeLog | 3 +++
hapassoc-1.2-7/hapassoc/inst/doc/hapassoc.R |only
hapassoc-1.2-7/hapassoc/inst/doc/hapassoc.pdf |binary
hapassoc-1.2-7/hapassoc/vignettes |only
8 files changed, 14 insertions(+), 8 deletions(-)
Title: Useful libraries for building a Java based GUI under R
Diff between CommonJavaJars versions 1.0-4 dated 2014-02-17 and 1.0-5 dated 2014-08-25
More information about CommonJavaJars at CRAN
Description: Useful libraries for building a Java based GUI under R
Author: Kornelius Rohmeyer (R package), see COPYRIGHTS file for the authors of the java libraries
Maintainer: Kornelius Rohmeyer
CommonJavaJars-1.0-4/CommonJavaJars/inst/java/commons-collections-3.2.1.jar |only
CommonJavaJars-1.0-4/CommonJavaJars/inst/java/commons-io-2.4.jar |only
CommonJavaJars-1.0-4/CommonJavaJars/inst/java/commons-logging-1.1.1.jar |only
CommonJavaJars-1.0-4/CommonJavaJars/inst/java/forms-1.2.0.jar |only
CommonJavaJars-1.0-4/CommonJavaJars/inst/java/forms-1.6.0-J6.jar |only
CommonJavaJars-1.0-4/CommonJavaJars/inst/java/jlatexmath-0.9.7.jar |only
CommonJavaJars-1.0-4/CommonJavaJars/inst/java/poi-3.8-20120326.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/DESCRIPTION | 9 +-
CommonJavaJars-1.0-5/CommonJavaJars/MD5 | 38 +++++-----
CommonJavaJars-1.0-5/CommonJavaJars/build/vignette.rds |binary
CommonJavaJars-1.0-5/CommonJavaJars/inst/COPYRIGHTS |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/doc/CommonJavaJars.R | 2
CommonJavaJars-1.0-5/CommonJavaJars/inst/doc/CommonJavaJars.Rnw | 11 --
CommonJavaJars-1.0-5/CommonJavaJars/inst/doc/CommonJavaJars.pdf |binary
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/NOTE | 2
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/afcommons.jar |binary
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/commons-collections4-4.0.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/commons-io-2.2.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/commons-io-2.4-J6.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/commons-logging-1.2.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/forms-1.4.2.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/forms-1.7.2-J6.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/javax.json-1.0.4.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/jgoodies-common-1.2.1.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/jgoodies-common-1.7.0-J6.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/inst/java/jlatexmath-1.0.3.jar |only
CommonJavaJars-1.0-5/CommonJavaJars/java |only
CommonJavaJars-1.0-5/CommonJavaJars/man/CommonJavaJars-package.Rd | 11 +-
CommonJavaJars-1.0-5/CommonJavaJars/vignettes/CommonJavaJars-concordance.tex |only
CommonJavaJars-1.0-5/CommonJavaJars/vignettes/CommonJavaJars.Rnw | 11 --
30 files changed, 40 insertions(+), 44 deletions(-)
Permanent link
Title: Command pattern in R
Diff between commandr versions 0.9.5 dated 2012-09-04 and 1.0.1 dated 2014-08-25
Description: An S4 representation of the Command design pattern. The
Operation class is a simple implementation using closures and supports
forward and reverse (undo) evaluation. The more complicated Protocol
framework represents each type of command (or analytical protocol) by
a formal S4 class. Commands may be grouped and consecutively executed
using the Pipeline class. Example use cases include logging, do/undo,
analysis pipelines, GUI actions, parallel processing, etc.
Author: Michael Lawrence
Maintainer: Tengfei Yin
commandr-0.9.5/commandr/inst/example |only
commandr-0.9.5/commandr/todo.org |only
commandr-1.0.1/commandr/DESCRIPTION | 24 ++++++++++++------------
commandr-1.0.1/commandr/MD5 | 9 +++++----
commandr-1.0.1/commandr/build |only
commandr-1.0.1/commandr/inst/doc/intro.R |only
commandr-1.0.1/commandr/inst/doc/intro.pdf |binary
commandr-1.0.1/commandr/vignettes |only
8 files changed, 17 insertions(+), 16 deletions(-)
Title: Exact Conditional Tests and Confidence Intervals for 2x2 tables
Diff between exact2x2 versions 1.3.0 dated 2014-04-30 and 1.4.0 dated 2014-08-25
Description: Calculates Fisher's exact test, Blaker's exact test, or the exact McNemar's test with appropriate matching confidence intervals. Provides power and sample size calculations. Also gives melded confidence intervals for the binomial case.
Author: Michael P. Fay
Maintainer: Michael P. Fay
ChangeLog | 6 ++++++
DESCRIPTION | 10 +++++-----
MD5 | 19 ++++++++++---------
R/binomMeld.test.R | 12 +++++++++---
build/vignette.rds |binary
inst/CITATION | 8 ++++----
inst/doc/CalculationDetailsBinomialMeldTest.pdf |only
inst/doc/exact2x2.pdf |binary
inst/doc/exactMcNemar.pdf |binary
man/binomMeldtest.Rd | 2 +-
man/exact2x2-package.Rd | 8 ++++----
11 files changed, 39 insertions(+), 26 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-31 0.1.0
Title: Analyze shot group data
Diff between shotGroups versions 0.5 dated 2014-07-04 and 0.6 dated 2014-08-25
Description: Analyzes shooting data with respect to group shape,
precision, and accuracy. This includes graphical methods,
descriptive statistics, and inference tests using standard,
but also non-parametric and robust statistical methods. Works
with files exported by OnTarget PC and OnTarget TDS or with
custom data files in text format with a similar structure.
Author: Daniel Wollschlaeger
Maintainer: Daniel Wollschlaeger
DESCRIPTION | 10 -
MD5 | 147 ++++++++--------
NAMESPACE | 13 +
R/analyzeGroup.R | 29 ++-
R/combineData.R | 99 ++++++++---
R/compareGroups.R | 382 ++++++++++++++++++++++++++++++++------------
R/draw.R | 141 ++++++++++++++++
R/drawGroup.R | 50 ++---
R/drawTarget.R | 235 +++++++++++++++++++--------
R/getCEP.R | 79 +++++----
R/getHitProb.R | 31 ++-
R/getMOA.R | 98 +++++------
R/getXYmat.R | 47 ++---
R/groupLocation.R | 2
R/groupShape.R | 6
R/groupSpread.R | 90 ++++++----
R/grubbs.R | 125 +++++++++++---
R/hoyt.R | 105 ++++++------
R/maxwell.R |only
R/mvnEll.R | 63 ++++---
R/rayleigh.R | 116 +++++++++----
R/readData.R | 73 +++++---
R/rice.R |only
R/simRingCount.R | 82 ++++++++-
R/targetDef.R |only
R/unitConversion.R | 2
R/windows/getFileNames.R | 2
data/DF300BLK.rda |binary
data/DF300BLKhl.rda |binary
data/DFcciHV.rda |binary
data/DFcm.rda |binary
data/DFinch.rda |binary
data/DFlistCm.rda |binary
data/DFsavage.rda |binary
data/DFscar17.rda |binary
data/DFtalon.rda |binary
data/targets.rda |binary
inst/ChangeLog | 97 ++++++++++-
inst/doc/shotGroups.R | 79 +++++++--
inst/doc/shotGroups.Rnw | 242 +++++++++++++++++++--------
inst/doc/shotGroups.pdf |binary
man/DF300BLKhl.Rd | 18 +-
man/DF300blk.Rd | 18 +-
man/DFcciHV.Rd | 18 +-
man/DFcm.Rd | 26 +-
man/DFinch.Rd | 26 +-
man/DFsavage.Rd | 22 +-
man/DFscar17.Rd | 18 +-
man/DFtalon.Rd | 20 +-
man/analyzeGroup.Rd | 30 +--
man/combineData.Rd | 11 -
man/compareGroups.Rd | 17 +
man/fromMOA.Rd | 10 -
man/getBoundingBox.Rd | 2
man/getCEP.Rd | 30 +--
man/getConfEll.Rd | 2
man/getDistance.Rd | 6
man/getHitProb.Rd | 14 -
man/getMOA.Rd | 10 -
man/getMaxPairDist.Rd | 10 -
man/getMaxParam.Rd |only
man/getMinBBox.Rd | 2
man/getMinCircle.Rd | 2
man/getRayParam.Rd | 33 ++-
man/getRiceParam.Rd |only
man/getXYmat.Rd | 2
man/groupShape.Rd | 6
man/groupSpread.Rd | 21 +-
man/hoyt.Rd | 12 -
man/maxwell.Rd |only
man/mvnEll.Rd | 2
man/rayleigh.Rd |only
man/rice.Rd |only
man/shotGroups-package.Rd | 8
man/simRingCount.Rd | 2
man/targets.Rd | 16 +
vignettes/distributions.pdf |only
vignettes/lit.bib | 22 ++
vignettes/shotGroups.Rnw | 242 +++++++++++++++++++--------
79 files changed, 2134 insertions(+), 989 deletions(-)
Title: Nash Optimal Party Positions
Diff between nopp versions 1.0.3 dated 2012-10-22 and 1.0.4 dated 2014-08-25
Description: Estimation of party/candidate ideological positions
that correspond to a Nash equilibrium along a
one-dimensional space.
Author: Luigi Curini, Stefano M. Iacus
Maintainer: Stefano M. Iacus
nopp-1.0.3/nopp/inst/doc/nopp.Rnw |only
nopp-1.0.4/nopp/DESCRIPTION | 16 +++++++++-------
nopp-1.0.4/nopp/MD5 | 9 ++++-----
nopp-1.0.4/nopp/NAMESPACE | 2 ++
nopp-1.0.4/nopp/inst/NEWS | 4 +++-
nopp-1.0.4/nopp/man/equilibrium.Rd | 33 ++++++++++++++++++++++-----------
6 files changed, 40 insertions(+), 24 deletions(-)
Title: Tools to manage a parametric function that describes phenology
Diff between phenology versions 3.69 dated 2014-06-22 and 3.72 dated 2014-08-25
Description: Functions to fit and test the phenology of species based on counts. The package includes also several useful more general functions.
Author: Marc Girondot
Maintainer: Marc Girondot
DESCRIPTION | 12 ++---
MD5 | 60 ++++++++++++++--------------
NAMESPACE | 1
NEWS | 15 +++++++
R/Script_MCMC.r | 50 +++++++++++------------
R/as.mcmc.mcmcComposite.R | 6 +-
R/as.par.mcmcComposite.R | 2
R/compassRose2.R | 2
R/convert.ts.R |only
R/daily_count.R | 2
R/getTide.R | 9 +---
R/ind_long_lat.R | 48 ++++++++++++++--------
R/local.search.R | 1
R/map.scale2.R | 10 ++--
R/phenology-package.R | 7 +--
R/phenology_MHmcmc_p.R | 53 +++++++++++++++++++------
R/plot.mcmcComposite.R | 90 +++++++++++++++++++++++++++++++------------
R/read_folder.R | 2
R/summary.mcmcComposite.R | 47 +++++++++-------------
R/toggle_Min_PMin.R | 2
man/as.mcmc.mcmcComposite.Rd | 4 -
man/as.par.mcmcComposite.Rd | 3 -
man/compassRose2.Rd | 2
man/convert.ts.Rd |only
man/local.search.Rd | 1
man/map.scale2.Rd | 8 ++-
man/phenology-package.Rd | 7 +--
man/phenology_MHmcmc.Rd | 46 ++++++++++-----------
man/phenology_MHmcmc_p.Rd | 29 ++++++++++---
man/plot.mcmcComposite.Rd | 33 ++++++++++-----
man/read_folder.Rd | 2
man/summary.mcmcComposite.Rd | 47 +++++++++-------------
32 files changed, 358 insertions(+), 243 deletions(-)