New package trajectories with initial version 0.1-0
Package: trajectories
Version: 0.1-0
Date: 2014-08-27
Title: Classes and methods for trajectory data
Authors@R: c(person("Edzer", "Pebesma", role = c("cre", "aut"), email = "edzer.pebesma@uni-muenster.de"), person("Benedikt", "Klus", role = "aut"))
Depends: R (>= 2.14.0)
Imports: methods, lattice, sp (>= 1.0-14), spacetime (>= 1.0-0), rgdal, rgeos
Suggests: rgl, OpenStreetMap, RCurl, rjson, adehabitatLT
LazyData: no
Description: Classes and methods for trajectory data, with nested classes for individual trips, and collections for different entities. Methods include selection, generalization, aggregation, intersection, and plotting.
License: GPL (>= 2)
URL: http://github.com/edzer/trajectories
Collate: Class-Tracks.R Tracks-methods.R stplot.R
Packaged: 2014-08-27 21:05:41 UTC; edzer
Author: Edzer Pebesma [cre, aut], Benedikt Klus [aut]
Maintainer: Edzer Pebesma
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-28 00:05:09

More information about trajectories at CRAN
Permanent link

Package Runuran updated to version 0.21.0 with previous version 0.20.0 dated 2012-09-10

Title: R interface to the UNU.RAN random variate generators
Description: Interface to the UNU.RAN library for Universal Non-Uniform RANdom variate generators. Thus it allows to build non-uniform random number generators from quite arbitrary distributions. In particular, it provides an algorithm for fast numerical inversion for distribution with given density function. In addition, the package contains densities, distribution functions and quantiles from a couple of distributions.
Author: Josef Leydold and Wolfgang H\"ormann
Maintainer: Josef Leydold

Diff between Runuran versions 0.20.0 dated 2012-09-10 and 0.21.0 dated 2014-08-27

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New package replicationInterval with initial version 0.1
Package: replicationInterval
Type: Package
Title: Replication Interval Functions
Version: 0.1
Date: 2014-08-27
Author: David Stanley
Maintainer: David Stanley
Description: A common problem faced by journal reviewers and authors is the question of whether the results of a replication study are consistent with the original published study. One solution to this problem is to examine the effect size from the published study and generate the range of effect sizes that could reasonably be obtained (due to random sampling) in a replication attempt (i.e., calculate a replication interval). If a replication effect size falls outside the replication interval then that value could not have occurred to due the effects of sampling error alone. Alternatively, if a replication effect size falls within the replication interval then the replication results could have reasonably occurred due to the effects of sampling error alone. This package has functions that calculate the replication interval for two different types of effect sizes (i.e., correlation, Cohen's d).
Imports: MBESS
License: Unlimited
Packaged: 2014-08-27 20:23:22 UTC; stanley
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 23:32:23

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Package gWidgets updated to version 0.0-54 with previous version 0.0-53 dated 2014-07-20

Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building interactive GUIs. At least one of the 'gWidgetsXXX packages', such as gWidgetstcltk, needs to be installed. Some icons are on loan from the scigraphica project http://scigraphica.sourceforge.net.
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and suggestions by Simon Urbanek, Philippe Grosjean and Michael Lawrence
Maintainer: John Verzani

Diff between gWidgets versions 0.0-53 dated 2014-07-20 and 0.0-54 dated 2014-08-27

 DESCRIPTION                |    6 +++---
 MD5                        |   12 ++++++------
 NEWS                       |   12 ++++++++++++
 R/gcommandline.R           |    4 ++--
 R/gvariables.R             |   17 +++++++++--------
 inst/doc/addingToolkit.pdf |binary
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New package dotenv with initial version 1.0
Package: dotenv
Title: Load environment variables from .env
Version: 1.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: Load configuration from a .env file, that is in the current working directory, into environment variables.
License: MIT + file LICENSE
LazyData: true
Imports: magrittr, falsy
URL: https://github.com/gaborcsardi/dotenv
BugReports: https://github.com/gaborcsardi/dotenv/issues
Packaged: 2014-08-27 19:55:50 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 23:42:52

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Package bfast updated to version 1.5.7 with previous version 1.4.4 dated 2013-03-27

Title: Breaks For Additive Season and Trend (BFAST)
Description: BFAST integrates the decomposition of time series into trend, seasonal, and remainder components with methods for detecting and characterizing abrupt changes within the trend and seasonal components. BFAST can be used to analyze different types of satellite image time series and can be applied to other disciplines dealing with seasonal or non-seasonal time series, such as hydrology, climatology, and econometrics. The algorithm can be extended to label detected changes with information on the parameters of the fitted piecewise linear models. BFAST monitoring functionality is added based on a paper that has been submitted to Remote Sensing of Environment. BFAST monitor provides functionality to detect disturbance in near real-time based on BFAST-type models. BFAST approach is flexible approach that handles missing data without interpolation. Furthermore now different models can be used to fit the time series data and detect structural changes (breaks).
Author: Jan Verbesselt [aut, cre], Achim Zeileis [aut], Rob Hyndman [ctb]
Maintainer: Jan Verbesselt

Diff between bfast versions 1.4.4 dated 2013-03-27 and 1.5.7 dated 2014-08-27

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New package lmeVarComp with initial version 1.0
Package: lmeVarComp
Type: Package
Title: Testing for a subset of variance components in linear mixed models
Version: 1.0
Date: 2014-08-27
Author: Yichi Zhang
Maintainer: Yichi Zhang
Description: Test zero variance components in linear mixed models and test additivity in nonparametric regression using the restricted likelihood ratio test and the generalized F-test.
License: GPL (>= 2)
Suggests: RLRsim, varComp
ByteCompile: yes
NeedsCompilation: yes
Packaged: 2014-08-27 17:33:32 UTC; yzhang52
Repository: CRAN
Date/Publication: 2014-08-27 21:17:18

More information about lmeVarComp at CRAN
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Package gsubfn updated to version 0.6-6 with previous version 0.6-5 dated 2012-10-22

Title: Utilities for strings and function arguments.
Description: gsubfn is like gsub but can take a replacement function or certain other objects instead of the replacement string. Matches and back references are input to the replacement function and replaced by the function output. gsubfn can be used to split strings based on content rather than delimiters and for quasi-perl-style string interpolation. The package also has facilities for translating formulas to functions and allowing such formulas in function calls instead of functions. This can be used with R functions such as apply, sapply, lapply, optim, integrate, xyplot, Filter and any other function that expects another function as an input argument or functions like cat or sql calls that may involve strings where substitution is desirable.
Author: G. Grothendieck
Maintainer: G. Grothendieck

Diff between gsubfn versions 0.6-5 dated 2012-10-22 and 0.6-6 dated 2014-08-27

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Package ptinpoly updated to version 2.4 with previous version 2.1 dated 2014-04-30

Title: Point-In-Polyhedron Test (2D and 3D)
Description: Function 'pip3d' tests whether a point in 3D space is within, exactly on, or outside an enclosed surface defined by a triangular mesh. Function 'pip2d' tests whether a point in 2D space is within, exactly on, or outside a polygon.
Author: Jose M. Maisog, Yuan Wang, George Luta, Jianfei Liu
Maintainer: Jose M. Maisog

Diff between ptinpoly versions 2.1 dated 2014-04-30 and 2.4 dated 2014-08-27

 DESCRIPTION           |   19 ++++++------
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 src/kodtree.h         |    2 -
 src/pinpolyhedronA.cc |   74 +++++++++++++++++++++++++++++++++-----------------
 15 files changed, 123 insertions(+), 72 deletions(-)

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Package R.filesets updated to version 2.6.0 with previous version 2.4.0 dated 2014-02-28

Title: Easy handling of and access to files organized in structured directories
Description: A file set refers to a set of files located in one or more directories on the file system. This package provides classes and methods to locate, setup, subset, navigate and iterate such sets. The API is designed such that these classes can be extended via inheritance to provide a richer API for special file formats. Moreover, a specific name format is defined such that filenames and directories can be considered to have full names which consists of a name followed by comma-separated tags. This adds additional flexibility to identify file sets and individual files. NOTE: This package's API should be considered to be in an beta stage. Its main purpose is currently to support the aroma.* packages, where it is one of the main core components; if you decide to build on top of this package, please contact the author first.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson

Diff between R.filesets versions 2.4.0 dated 2014-02-28 and 2.6.0 dated 2014-08-27

 DESCRIPTION                                         |   16 +-
 MD5                                                 |   54 ++++---
 NAMESPACE                                           |    3 
 NEWS                                                |   75 ++++++++++
 R/ChecksumFileSet.R                                 |    6 
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 R/GenericDataFile.R                                 |   30 +++-
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New package shopifyr with initial version 0.28
Package: shopifyr
Type: Package
Title: An R Interface to the Shopify API
Version: 0.28
Date: 2014-07-28
Author: Charlie Friedemann
Maintainer: Charlie Friedemann
Description: An interface to the API of the E-commerce service Shopify (http://docs.shopify.com/api)
URL: https://github.com/charliebone/shopifyr/
License: GPL-3
Depends: R (>= 3.0), RCurl
Imports: R6 (>= 2.0), RJSONIO
Collate: 'Announcement.R' 'ApplicationCharge.R' 'Article.R' 'Asset.R' 'Blog.R' 'CarrierService.R' 'Checkout.R' 'Collect.R' 'Comment.R' 'Country.R' 'CustomCollection.R' 'Customer.R' 'CustomerGroup.R' 'Event.R' 'Fulfillment.R' 'FulfillmentService.R' 'Location.R' 'MetaField.R' 'Order.R' 'OrderRisks.R' 'Page.R' 'Product.R' 'ProductImage.R' 'ProductVariant.R' 'Province.R' 'RecurringApplicationCharge.R' 'Redirect.R' 'Refund.R' 'ScriptTag.R' 'Shop.R' 'private.R' 'Webhook.R' 'Transaction.R' 'Theme.R' 'SmartCollection.R' 'ShopifyShop.R' 'shopfyr-package.R'
Packaged: 2014-08-27 15:24:00 UTC; Charlie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:04:04

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Package pscl updated to version 1.4.6 with previous version 1.04.4 dated 2012-06-13

Title: Political Science Computational Laboratory, Stanford University
Description: Bayesian analysis of item-response theory (IRT) models, roll call analysis; computing highest density regions; maximum likelihood estimation of zero-inflated and hurdle models for count data; goodness-of-fit measures for GLMs; data sets used in writing and teaching at the Political Science Computational Laboratory; seats-votes curves.
Author: Simon Jackman, with contributions from Alex Tahk, Achim Zeileis, Christina Maimone and Jim Fearon
Maintainer: Simon Jackman

Diff between pscl versions 1.04.4 dated 2012-06-13 and 1.4.6 dated 2014-08-27

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Package MultiSV updated to version 0.0-67 with previous version 0.0-62 dated 2014-07-02

Title: MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
Description: MultiSV is an R package for identification of structural variations in multiple populations based on whole genome resequencing. It fits linear mixed model and identifies structural variations in multiple populations using whole genome sequencing data. It could also be manipulated to use on RNA-seq data for differential gene expression (implementation in future releases). Main steps for analysis include generating read depth in bins using ComputeBinCounts. conversion of bins to MultiSV format using Bin2MultiSV. Finally, identification of structural variations using CallMultiSV.
Author: Khurram Maqbool
Maintainer: Khurram Maqbool

Diff between MultiSV versions 0.0-62 dated 2014-07-02 and 0.0-67 dated 2014-08-27

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 10 files changed, 46 insertions(+), 77 deletions(-)

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Package fwsim updated to version 0.3.2 with previous version 0.3.1 dated 2014-04-25

Title: Fisher-Wright Population Simulation
Description: Simulates a population under the Fisher-Wright model (fixed or stochastic population size) with a one-step neutral mutation process (stepwise mutation model, logistic mutation model and exponential mutation model supported). The stochastic population sizes are random Poisson distributed and different kinds of population growth are supported. For the stepwise mutation model, it is possible to specify locus and direction specific mutation rate (in terms of upwards and downwards mutation rate). Intermediate generations can be saved in order to study e.g. drift.
Author: Mikkel Meyer Andersen and Poul Svante Eriksen
Maintainer: Mikkel Meyer Andersen

Diff between fwsim versions 0.3.1 dated 2014-04-25 and 0.3.2 dated 2014-08-27

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 R/summary.R            |   36 +++++++++----
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Permanent link

New package falsy with initial version 1.0
Package: falsy
Title: Define truthy and falsy values
Version: 1.0
Authors@R: "Gabor Csardi [aut, cre]"
Description: A value is falsy if it is NULL, FALSE, the empty string, zero, or an empty vector or list. Other values are truthy. The new %&&% and %||% operators work with falsy and truthy values and can be used for concise conditional execution.
License: MIT + file LICENSE
Suggests: testthat
URL: https://github.com/gaborcsardi/falsy
BugReports: https://github.com/gaborcsardi/falsy/issues
Packaged: 2014-08-27 16:10:35 UTC; gaborcsardi
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:52:29

More information about falsy at CRAN
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New package decompr with initial version 1.1
Package: decompr
Type: Package
Title: Export Decomposition (Wang-Wei-Zhu and source)
Version: 1.1
Date: 2014-08-27
Author: Bastiaan Quast
Maintainer: Bastiaan Quast
Description: The R package 'decompr' implements two export decomposition algorithms. Firstly, the Wang-Wei-Zhu (Wang, Wei, and Zhu 2013) algorithm splits bilateral gross exports into 16 value added components. Secondly, the Source decomposition algorithm derives the value added origin of exports by country and industry, which is also based on Wang, Wei, and Zhu (2013).
Depends: R (>= 2.10)
License: GPL-3
Packaged: 2014-08-27 13:03:19 UTC; quast2
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 18:09:17

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New package Crossover with initial version 0.1-10
Package: Crossover
Type: Package
Title: Crossover Designs
Version: 0.1-10
Author: Kornelius Rohmeyer
Maintainer: Kornelius Rohmeyer
Description: Package Crossover provides different crossover designs from combinatorial or search algorithms as well as from literature and a GUI to access them.
Depends: R (>= 3.0.2), rJava (>= 0.8-3), CommonJavaJars (>= 1.0.5), JavaGD, ggplot2
Imports: MASS, crossdes (>= 1.1-1), xtable, methods, Matrix, multcomp, stats4, digest
Suggests: knitr, RUnit, nlme
SystemRequirements: Java (>= 5.0)
LinkingTo: Rcpp (>= 0.10.3), RcppArmadillo (>= 0.2.0)
License: GPL-2
VignetteBuilder: knitr
URL: https://github.com/kornl/Crossover/wiki
BugReports: https://github.com/kornl/Crossover/issues
Packaged: 2014-08-27 14:36:10 UTC; kornel
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-27 17:28:51

More information about Crossover at CRAN
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Package WhopGenome updated to version 0.8.9 with previous version 0.8.2 dated 2013-12-03

Title: High-speed processing of whole-genome VCF-format variation data, FASTA-format sequence data and several alignments formats.
Description: WhopGenome's provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Author: Ulrich Wittelsbuerger
Maintainer: Ulrich Wittelsbuerger

Diff between WhopGenome versions 0.8.2 dated 2013-12-03 and 0.8.9 dated 2014-08-27

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New package statebins with initial version 1.0
Package: statebins
Type: Package
Title: statebins is an alternative to choropleth maps for USA States
Version: 1.0
Date: 2014-08-26
Author: Bob Rudis (@hrbrmstr)
Maintainer: Bob Rudis
Description: statebins is an alternative to choropleth maps for USA States and is based on work by the Washington Post graphics department in their report on "The states most threatened by trade". statebins preserves as much of the geographic placement of the states as possible but has the look and feel of a traditional heatmap. Functions are provided that allow for use of both a binned, discrete scale and continuous scale depending on what is needed for the underlying data.
URL: http://github.com/hrbrmstr/statebins
BugReports: https://github.com/hrbrmstr/statebins/issues
License: MIT + file LICENSE
Suggests: testthat
Depends: R (>= 3.0.0), ggplot2, grid, scales, gridExtra, RColorBrewer
Packaged: 2014-08-27 13:24:41 UTC; bob
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 16:35:46

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Package mediation updated to version 4.4.2 with previous version 4.4.1 dated 2014-08-13

Title: Causal Mediation Analysis
Description: mediation allows both parametric and nonparametric causal mediation analysis. It implements the methods and suggestions in Imai, Keele and Yamamoto (2010), Imai, Keele and Tingley (2010), Imai, Tingley and Yamamoto (2013), Imai and Yamamoto (2013) and Yamamoto (2013). In addition to the estimation of causal mediation effects, the software also allows researchers to conduct sensitivity analysis for certain parametric models.
Author: Dustin Tingley , Teppei Yamamoto , Kentaro Hirose , Luke Keele , Kosuke Imai
Maintainer: Teppei Yamamoto

Diff between mediation versions 4.4.1 dated 2014-08-13 and 4.4.2 dated 2014-08-27

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Package SemiParSampleSel updated to version 1.1-1 with previous version 1.1 dated 2014-03-11

Title: Semiparametric Sample Selection Modelling with Continuous Response
Description: Routine for fitting continuous response copula sample selection models with semiparametric predictors, including linear and nonlinear effects.
Author: Giampiero Marra, Rosalba Radice and Malgorzata Wojtys
Maintainer: Giampiero Marra

Diff between SemiParSampleSel versions 1.1 dated 2014-03-11 and 1.1-1 dated 2014-08-27

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 MD5                             |   12 ++++++------
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 7 files changed, 20 insertions(+), 18 deletions(-)

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Permanent link

Package GMD updated to version 0.3.3 with previous version 0.3.1.1 dated 2012-02-06

Title: Generalized Minimum Distance of distributions
Description: GMD is a package for non-parametric distance measurement between two discrete frequency distributions.
Author: Xiaobei Zhao [aut, cre, cph], Albin Sandelin [aut]
Maintainer: Xiaobei Zhao

Diff between GMD versions 0.3.1.1 dated 2012-02-06 and 0.3.3 dated 2014-08-27

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New package SelvarMix with initial version 1.0
Package: SelvarMix
Type: Package
Title: Regularization for variable selection in model-based clustering and discriminant analysis.
Version: 1.0
Date: 2014-04-03
Author: Mohammed Sedki, Gilles Celeux, Cathy Maugis-Rabusseau
Maintainer: Mohammed Sedki
Description: Regularization for variable selection in model-based clustering and discriminant analysis
License: GPL (>= 3)
Imports: Rcpp (>= 0.11.1), glasso, parallel, Rmixmod
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2014-08-27 08:54:54 UTC; sedki
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-27 11:13:29

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New package rsdmx with initial version 0.3
Package: rsdmx
Version: 0.3
Date: 2014-08-27
Title: A package to read SDMX data and metadata
Authors@R: c( person("Emmanuel", "Blondel", role = c("aut", "cre"), email = "emmanuel.blondel1@gmail.com"), person("Matthieu", "Stigler", role = c("ctb")))
Maintainer: Emmanuel Blondel
Depends: R (>= 2.15)
Imports: methods, XML (>= 3.96-1.1), RCurl, plyr
Suggests: testthat
Description: The package hosts a set of classes and methods to parse/read SDMX data and metadata.
License: GPL (>= 2)
URL: https://github.com/opensdmx/rsdmx
BugReports: https://github.com/opensdmx/rsdmx/issues
LazyLoad: yes
Collate: Class-SDMXSchema.R Class-SDMXType.R Class-SDMXStructureType.R Class-SDMXHeader.R Class-SDMX.R Class-SDMXGenericData.R Class-SDMXCompactData.R Class-SDMXMessageGroup.R Class-SDMXConcept.R Class-SDMXConceptScheme.R Class-SDMXConcepts.R Class-SDMXCode.R Class-SDMXCodelist.R Class-SDMXCodelists.R Class-SDMXDimension.R Class-SDMXTimeDimension.R Class-SDMXPrimaryMeasure.R Class-SDMXAttribute.R Class-SDMXComponents.R Class-SDMXDataStructure.R Class-SDMXDataStructures.R Class-SDMXDataStructureDefinition.R SDMXSchema-methods.R SDMXType-methods.R SDMXStructureType-methods.R SDMXHeader-methods.R SDMX-methods.R SDMXGenericData-methods.R SDMXCompactData-methods.R SDMXMessageGroup-methods.R SDMXConcept-methods.R SDMXConceptScheme-methods.R SDMXConcepts-methods.R SDMXCode-methods.R SDMXCodelist-methods.R SDMXCodelists-methods.R SDMXDimension-methods.R SDMXTimeDimension-methods.R SDMXPrimaryMeasure-methods.R SDMXAttribute-methods.R SDMXComponents-methods.R SDMXDataStructure-methods.R SDMXDataStructures-methods.R SDMXDataStructureDefinition-methods.R readSDMX.R
Packaged: 2014-08-27 08:54:13 UTC; Utilisateur
Author: Emmanuel Blondel [aut, cre], Matthieu Stigler [ctb]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-27 11:13:31

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Package arm updated to version 1.7-07 with previous version 1.7-05 dated 2014-08-01

Title: Data Analysis Using Regression and Multilevel/Hierarchical Models
Description: R functions for processing lm, glm, svy.glm, merMod and polr outputs.
Author: Andrew Gelman [aut], Yu-Sung Su [aut, cre], Masanao Yajima [ctb], Jennifer Hill [ctb], Maria Grazia Pittau [ctb], Jouni Kerman [ctb], Tian Zheng [ctb], Vicent Dorie [ctb]
Maintainer: Yu-Sung Su

Diff between arm versions 1.7-05 dated 2014-08-01 and 1.7-07 dated 2014-08-27

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Package RHive updated to version 2.0-0.1 with previous version 2.0-0.0 dated 2014-04-16

Title: R and Hive
Description: RHive is an R extension facilitating distributed computing via HIVE query. It provides an easy to use HQL like SQL and R objects and functions in HQL.
Author: NexR
Maintainer: Johan Ahn

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Package pamr updated to version 1.55 with previous version 1.54.1 dated 2013-07-25

Title: Pam: prediction analysis for microarrays
Description: Some functions for sample classification in microarrays
Author: T. Hastie, R. Tibshirani, Balasubramanian Narasimhan, Gil Chu
Maintainer: Rob Tibshirani

Diff between pamr versions 1.54.1 dated 2013-07-25 and 1.55 dated 2014-08-27

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Package blkergm updated to version 1.1 with previous version 1.0 dated 2013-10-19

Title: Fitting block ERGM given the block structure on social networks
Description: This package is an extension to the "ergm" package which implements the block ergms.
Author: Xiaolin Yang [aut, cre], Stephen E. Fienberg [aut], Alessandro Rinaldo [aut], Han Liu [aut], Michael Rosenblum [aut]
Maintainer: Xiaolin Yang

Diff between blkergm versions 1.0 dated 2013-10-19 and 1.1 dated 2014-08-27

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