Title: Penalised Maximum Likelihood for Survival Analysis Models
Diff between survivalMPL versions 0.1.0 dated 2014-04-03 and 0.1.1 dated 2014-08-30
Description: Estimate the regression coefficients and the baseline hazard
of proportional hazard Cox models using maximum penalised likelihood.
A 'non-parametric' smooth estimate of the baseline hazard function
is provided.
Author: Dominique-Laurent Couturier, Jun Ma, Stephane Heritier.
Maintainer: Dominique-Laurent Couturier
DESCRIPTION | 10 +++++-----
MD5 | 6 +++---
R/coxph.r | 2 +-
man/survivalMPL-package.Rd | 2 +-
4 files changed, 10 insertions(+), 10 deletions(-)
Title: Non-supervised Regional Frequency Analysis
Diff between nsRFA versions 0.7-11 dated 2013-12-16 and 0.7-12 dated 2014-08-30
Description: A collection of statistical tools for objective (non-supervised) applications
of the Regional Frequency Analysis methods in hydrology.
The package refers to the index-value method and, more precisely, helps the
hydrologist to: (1) regionalize the index-value; (2) form homogeneous regions
with similar growth curves; (3) fit distribution functions to the
empirical regional growth curves.
Author: Alberto Viglione [aut, cre],
Jonathan R. M. Hosking [ctb],
Francesco Laio [ctb],
Alan Miller [ctb],
Eric Gaume [ctb],
Olivier Payrastre [ctb],
Jose Luis Salinas [ctb],
Chi Cong N'guyen [ctb],
Karine Halbert [ctb]
Maintainer: Alberto Viglione
DESCRIPTION | 22
MD5 | 29
R/BayesianMCMC.R | 2906 ++++++++++++++++++-------------------
R/BayesianMCMCreg.R |only
R/bestlm.R | 2
build/vignette.rds |binary
data/Ardechedata.RData |only
inst/doc/BayesianMCMC_reg.R |only
inst/doc/BayesianMCMC_reg.Rnw |only
inst/doc/BayesianMCMC_reg.pdf |only
inst/doc/Fig11GriffisStedinger.pdf |binary
inst/doc/Fig1ElamirSeheult.pdf |binary
inst/doc/MSClaio2008.pdf |binary
inst/doc/nsRFA_ex01.pdf |binary
inst/doc/nsRFA_ex02.pdf |binary
man/Ardechedata.Rd |only
man/BayesianMCMC.Rd | 130 +
man/nsRFA-package.Rd | 2
vignettes/BayesianMCMC_reg.Rnw |only
19 files changed, 1591 insertions(+), 1500 deletions(-)
Title: Integration of R, Java, and Scala
Diff between jvmr versions 2.11.1.1 dated 2014-06-25 and 2.11.2.1 dated 2014-08-30
Description: Cross-platform, self-contained, and bi-directional interface between R and Scala, Java, and other JVM-based languages.
Author: David B. Dahl [aut, cre], Scala developers [ctb] (see http://scala-lang.org/), beanshell2 developers [ctb] (see https://code.google.com/p/beanshell2/), jline2 developers [ctb] (see https://github.com/jline/jline2)
Maintainer: David B. Dahl
jvmr-2.11.1.1/jvmr/inst/COPYRIGHT |only
jvmr-2.11.1.1/jvmr/inst/srcjvmr |only
jvmr-2.11.2.1/jvmr/DESCRIPTION | 14 +++-
jvmr-2.11.2.1/jvmr/MD5 | 23 +++----
jvmr-2.11.2.1/jvmr/NAMESPACE | 6 ++
jvmr-2.11.2.1/jvmr/NEWS | 11 +++
jvmr-2.11.2.1/jvmr/R/main.R | 29 ++++++----
jvmr-2.11.2.1/jvmr/R/onLoad.R | 4 -
jvmr-2.11.2.1/jvmr/R/version.R | 2
jvmr-2.11.2.1/jvmr/R/zzz.R | 11 +++
jvmr-2.11.2.1/jvmr/inst/doc/Paper-in-Journal-of-Statistical-Software.pdf |binary
jvmr-2.11.2.1/jvmr/java |only
12 files changed, 66 insertions(+), 34 deletions(-)
Title: General Frailty models: shared, joint and nested frailty models
with prediction
Diff between frailtypack versions 2.6.1 dated 2014-07-23 and 2.7 dated 2014-08-30
Description: Frailtypack fits several classes of frailty models using a penalized likelihood
estimation on the hazard function but also a parametric estimation.
1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox
proportional hazard model. Clustered and recurrent survival times can be studied.
2) Additive frailty models for proportional hazard models with two correlated
random effects (intercept random effect with random slope).
3) Nested frailty models for hierarchically clustered data (with 2 levels of
clustering) by including two iid gamma random effects.
4) Joint frailty models in the context of joint modelling for recurrent events
with terminal event for clustered data or not.
Prediction values are available. Left-truncated (not for Joint model),
right-censored data, interval-censored data (only for Cox proportional hazard
and shared frailty model) and strata are allowed. In each model,
the random effects have a gamma distribution, but you can switch to a log-normal
in shared and joint models. Now, you can also consider time-varying covariates
effects in Cox, shared and joint models. The package includes concordance measures
for Cox proportional hazards models and for shared frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey
Mauguen, Agnieszka Krol-Listwon, Amadou Diakite and Alexandre Laurent
Maintainer: Virginie Rondeau
DESCRIPTION | 40
MD5 | 187 ++--
NEWS | 11
R/Cmeasures.R | 2
R/additivePenal.R | 132 +--
R/epoce.R | 4
R/frailtyPenal.R | 414 ++++-----
R/hazard.R | 137 +--
R/multivPenal.R | 2
R/plot.frailtyPenal.R | 63 -
R/plot.jointPenal.R | 152 ++-
R/plot.nestedPenal.additivePenal.R | 74 +
R/prediction.R | 28
R/print.additivePenal.R | 31
R/print.frailtyPenal.R | 18
R/print.jointPenal.R | 22
R/print.multivPenal.R | 2
R/print.nestedPenal.R | 34
R/survival.R | 109 +-
demo/frailtypack_additivePenal.R | 6
demo/frailtypack_frailtyPenal.R | 46 -
demo/frailtypack_jointPenal.R | 41
demo/frailtypack_nestedPenal.R | 14
man/Cmeasures.Rd | 6
man/Diffepoce.Rd | 20
man/SurvIC.Rd | 10
man/additivePenal.Rd | 52 -
man/epoce.Rd | 12
man/frailtyPenal.Rd | 107 +-
man/frailtypack-package.Rd | 18
man/hazard.Rd | 2
man/num.id.Rd | 2
man/plotAdditive.Rd | 15
man/plotFrailtyPenal.Rd | 10
man/plotJointPenal.Rd | 12
man/plotNestedPenal.Rd | 15
man/prediction.Rd | 41
man/slope.Rd | 6
man/subcluster.Rd | 2
man/summaryAdditive.Rd | 4
man/summaryFrailtyPenal.Rd | 4
man/summaryJointPenal.Rd | 4
man/summaryNestedPenal.Rd | 2
man/survival.Rd | 2
man/timedep.Rd | 6
src/Aparameters.f90 | 36
src/Makevars |only
src/aaOptim.f90 | 31
src/aaUseFunction.f90 | 8
src/aresidusMartingale.f90 | 3
src/distance.f90 | 1548 ++++++++++++++++++++++++++-----------
src/frailtypack.f90 | 343 ++++----
src/funcpaG_tps.f90 | 34
src/funcpaGcpm.f90 | 142 +--
src/funcpaGcpm_intcens.f90 | 23
src/funcpaGcpm_log.f90 | 31
src/funcpaGsplines.f90 | 82 -
src/funcpaGsplines_intcens.f90 | 25
src/funcpaGsplines_log.f90 | 42 -
src/funcpaGweib.f90 | 131 +--
src/funcpaGweib_intcens.f90 | 33
src/funcpaGweib_log.f90 | 58 -
src/funcpaMultivCpm.f90 | 132 +--
src/funcpaMultivSplines.f90 | 297 +++----
src/funcpaMultivWeib.f90 | 139 +--
src/funcpaacpm.f90 | 336 +++-----
src/funcpaasplines.f90 | 359 ++++----
src/funcpaaweib.f90 | 281 +++---
src/funcpaj_tps.f90 | 15
src/funcpajcpm.f90 | 41
src/funcpajcpm_log.f90 | 54 -
src/funcpajsplines.f90 | 204 ++--
src/funcpajsplines_intcens.f90 | 4
src/funcpajsplines_log.f90 | 123 +-
src/funcpajweib.f90 | 43 -
src/funcpajweib_intcens.f90 | 5
src/funcpajweib_log.f90 | 44 -
src/funcpancpm.f90 | 230 ++---
src/funcpansplines.f90 | 288 +++---
src/funcpanweib.f90 | 108 +-
src/funcpas_tps.f90 | 4
src/funcpascpm.f90 | 328 ++-----
src/funcpascpm_intcens.f90 | 40
src/funcpascpm_log.f90 | 252 +-----
src/funcpassplines.f90 | 175 +---
src/funcpassplines_intcens.f90 | 48 -
src/funcpassplines_log.f90 | 237 ++---
src/funcpasweib.f90 | 92 --
src/funcpasweib_intcens.f90 | 26
src/funcpasweib_log.f90 | 113 --
src/joint.f90 | 211 ++---
src/multiveJoint.f90 | 44 -
src/nested.f90 | 19
src/risque.f90 | 60 +
src/survival.f90 | 246 +++++
95 files changed, 4826 insertions(+), 4263 deletions(-)
Title: Calculate indices and theoretical physicochemical properties of
peptides and protein sequences
Diff between Peptides versions 0.4 dated 2014-03-26 and 1.0 dated 2014-08-30
Description: Calculate physicochemical properties and indices from aminoacid sequences of peptides and proteins. Include also utilities for read and plot GROMACS output files .XVG.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio
Peptides-0.4/Peptides/R/AAcomp.R |only
Peptides-0.4/Peptides/R/Boman.R |only
Peptides-0.4/Peptides/R/MW.R |only
Peptides-0.4/Peptides/R/h.R |only
Peptides-0.4/Peptides/R/kd.R |only
Peptides-0.4/Peptides/data/Pepdata.RData |only
Peptides-0.4/Peptides/man/kd.Rd |only
Peptides-1.0/Peptides/DESCRIPTION | 13 ++-
Peptides-1.0/Peptides/MD5 | 82 ++++++++++++++-----------
Peptides-1.0/Peptides/NAMESPACE | 2
Peptides-1.0/Peptides/R/aacomp.R |only
Peptides-1.0/Peptides/R/aindex.R | 36 +++++------
Peptides-1.0/Peptides/R/boman.R |only
Peptides-1.0/Peptides/R/charge.R | 44 ++++++++-----
Peptides-1.0/Peptides/R/hmoment.R | 71 ++++++++-------------
Peptides-1.0/Peptides/R/hydrophobicity.R |only
Peptides-1.0/Peptides/R/instaindex.R | 64 ++++++++++++-------
Peptides-1.0/Peptides/R/lengthpep.R | 8 +-
Peptides-1.0/Peptides/R/membpos.R | 80 ++++++++----------------
Peptides-1.0/Peptides/R/mw.R |only
Peptides-1.0/Peptides/R/pI.R | 45 ++++---------
Peptides-1.0/Peptides/R/plot.xvg.R | 7 ++
Peptides-1.0/Peptides/R/read.xvg.R | 12 +++
Peptides-1.0/Peptides/data/H.RData |only
Peptides-1.0/Peptides/data/datalist | 4 -
Peptides-1.0/Peptides/data/pKscales.RData |only
Peptides-1.0/Peptides/data/pepdata.RData |only
Peptides-1.0/Peptides/inst/tests |only
Peptides-1.0/Peptides/man/AAcomp.Rd | 66 ++++++++++++--------
Peptides-1.0/Peptides/man/Boman.Rd | 26 +++----
Peptides-1.0/Peptides/man/MW.Rd | 22 +++++-
Peptides-1.0/Peptides/man/Pepdata.Rd | 12 +--
Peptides-1.0/Peptides/man/Peptides-package.Rd | 12 +--
Peptides-1.0/Peptides/man/aindex.Rd | 22 +++---
Peptides-1.0/Peptides/man/charge.Rd | 76 ++++++++++++++++++-----
Peptides-1.0/Peptides/man/h.Rd | 85 +++++++++++++++++++-------
Peptides-1.0/Peptides/man/hmoment.Rd | 33 ++++++----
Peptides-1.0/Peptides/man/hydrophobicity.Rd |only
Peptides-1.0/Peptides/man/instaindex.Rd | 15 +++-
Peptides-1.0/Peptides/man/lengthpep.Rd | 19 +++--
Peptides-1.0/Peptides/man/membpos.Rd | 41 +++++++++---
Peptides-1.0/Peptides/man/pI.Rd | 50 +++++++++++----
Peptides-1.0/Peptides/man/pKscales.Rd |only
Peptides-1.0/Peptides/man/plot.xvg.Rd | 16 +++-
Peptides-1.0/Peptides/man/read.xvg.Rd | 13 +++
Peptides-1.0/Peptides/tests |only
46 files changed, 590 insertions(+), 386 deletions(-)
Title: Recognize and parse dates in various formats, including all ISO
8601 formats
Diff between parsedate versions 1.0.2 dated 2014-08-28 and 1.0.3 dated 2014-08-30
Description: Parse dates automatically, without the need of
specifying a format. Currently it includes the git date parser.
It can also recognize and parse all ISO 8601 formats.
Author: Gabor Csardi, Linus Torvalds
Maintainer: Gabor Csardi
DESCRIPTION | 6 +++---
MD5 | 6 +++---
R/parsedate-package.r | 3 +--
tests/testthat.R | 4 +++-
4 files changed, 10 insertions(+), 9 deletions(-)
Title: Supplementary Item Response Theory Models
Diff between sirt versions 0.46-15 dated 2014-08-05 and 0.47-36 dated 2014-08-30
Description:
Supplementary item response theory models
to complement existing functions in R.
Author: Alexander Robitzsch
Maintainer: Alexander Robitzsch
sirt-0.46-15/sirt/R/isop_alg.R |only
sirt-0.46-15/sirt/man/rasch.conquest.Rd |only
sirt-0.47-36/sirt/DESCRIPTION | 20
sirt-0.47-36/sirt/MD5 | 133 +
sirt-0.47-36/sirt/NAMESPACE | 13
sirt-0.47-36/sirt/R/lavaan2mirt.R |only
sirt-0.47-36/sirt/R/matrix_functions.R | 4
sirt-0.47-36/sirt/R/mirt.wrapper.calc.counts.R |only
sirt-0.47-36/sirt/R/mirt.wrapper.coef.R |only
sirt-0.47-36/sirt/R/mirt.wrapper.fscores.R |only
sirt-0.47-36/sirt/R/mirt.wrapper.posterior.R |only
sirt-0.47-36/sirt/R/modelfit.cor.R | 9
sirt-0.47-36/sirt/R/noharm.sirt.R | 8
sirt-0.47-36/sirt/R/plot.noharm.sirt.R | 3
sirt-0.47-36/sirt/R/rasch.conquest.R | 4
sirt-0.47-36/sirt/R/smirt_postproc.R | 7
sirt-0.47-36/sirt/R/tam2mirt.R |only
sirt-0.47-36/sirt/R/tam2mirt.aux.R |only
sirt-0.47-36/sirt/inst/NEWS | 46
sirt-0.47-36/sirt/man/R2conquest.Rd |only
sirt-0.47-36/sirt/man/automatic.recode.Rd | 4
sirt-0.47-36/sirt/man/class.accuracy.rasch.Rd | 32
sirt-0.47-36/sirt/man/conf.detect.Rd | 62
sirt-0.47-36/sirt/man/data.big5.Rd | 6
sirt-0.47-36/sirt/man/data.long.Rd | 49
sirt-0.47-36/sirt/man/data.mcdonald.Rd | 12
sirt-0.47-36/sirt/man/data.mixed1.Rd | 12
sirt-0.47-36/sirt/man/data.read.Rd | 670 +++++++++-
sirt-0.47-36/sirt/man/data.reck.Rd | 10
sirt-0.47-36/sirt/man/data.wide2long.Rd | 24
sirt-0.47-36/sirt/man/equating.rasch.Rd | 53
sirt-0.47-36/sirt/man/fuzcluster.Rd | 62
sirt-0.47-36/sirt/man/gom.em.Rd | 77 +
sirt-0.47-36/sirt/man/greenyang.reliability.Rd | 28
sirt-0.47-36/sirt/man/invariance.alignment.Rd | 313 ++--
sirt-0.47-36/sirt/man/isop.test.Rd | 16
sirt-0.47-36/sirt/man/latent.regression.em.raschtype.Rd | 142 +-
sirt-0.47-36/sirt/man/lavaan2mirt.Rd |only
sirt-0.47-36/sirt/man/linking.haberman.Rd | 116 -
sirt-0.47-36/sirt/man/linking.robust.Rd | 28
sirt-0.47-36/sirt/man/lsdm.Rd | 132 -
sirt-0.47-36/sirt/man/marginal.truescore.reliability.Rd | 39
sirt-0.47-36/sirt/man/mcmclist2coda.Rd | 3
sirt-0.47-36/sirt/man/mirt.wrapper.Rd |only
sirt-0.47-36/sirt/man/modelfit.sirt.Rd | 36
sirt-0.47-36/sirt/man/pbivnorm2.Rd | 14
sirt-0.47-36/sirt/man/person.parameter.rasch.copula.Rd | 6
sirt-0.47-36/sirt/man/personfit.stat.Rd | 46
sirt-0.47-36/sirt/man/pgenlogis.Rd | 6
sirt-0.47-36/sirt/man/plausible.value.imputation.raschtype.Rd | 48
sirt-0.47-36/sirt/man/polychoric2.Rd | 2
sirt-0.47-36/sirt/man/prmse.subscores.scales.Rd | 50
sirt-0.47-36/sirt/man/prob.guttman.Rd | 126 +
sirt-0.47-36/sirt/man/qmc.nodes.Rd | 28
sirt-0.47-36/sirt/man/rasch.copula.Rd | 130 +
sirt-0.47-36/sirt/man/rasch.evm.pcm.Rd | 82 -
sirt-0.47-36/sirt/man/rasch.jml.Rd | 5
sirt-0.47-36/sirt/man/rasch.jml.biascorr.Rd | 14
sirt-0.47-36/sirt/man/rasch.jml.jackknife1.Rd | 43
sirt-0.47-36/sirt/man/rasch.mirtlc.Rd | 178 ++
sirt-0.47-36/sirt/man/rasch.mml.Rd | 21
sirt-0.47-36/sirt/man/rasch.pairwise.itemcluster.Rd | 40
sirt-0.47-36/sirt/man/rasch.pml.Rd | 10
sirt-0.47-36/sirt/man/rm.hrm.Rd | 32
sirt-0.47-36/sirt/man/sim.qm.ramsay.Rd | 71 -
sirt-0.47-36/sirt/man/sirt-package.Rd | 197 +-
sirt-0.47-36/sirt/man/smirt.Rd | 3
sirt-0.47-36/sirt/man/stratified.cronbach.alpha.Rd | 19
sirt-0.47-36/sirt/man/tam2mirt.Rd |only
sirt-0.47-36/sirt/man/testlet.marginalized.Rd | 20
sirt-0.47-36/sirt/man/tetrachoric2.Rd | 11
sirt-0.47-36/sirt/man/unidim.test.csn.Rd | 4
sirt-0.47-36/sirt/man/wle.rasch.jackknife.Rd | 42
sirt-0.47-36/sirt/man/yen.q3.Rd | 20
74 files changed, 2302 insertions(+), 1139 deletions(-)
Title: An Efficient Swiss Army Knife for Population Genomic Analyses
Diff between PopGenome versions 2.0.8 dated 2014-07-31 and 2.0.9 dated 2014-08-30
Description: PopGenome is an R-package for Population Genetic & Genomic Analysis
Author: Bastian Pfeifer, Ulrich Wittelsbuerger
Maintainer: Bastian Pfeifer
DESCRIPTION | 8
MD5 | 43 ++---
NEWS | 13 +
R/PopGplot.R | 4
R/Whop_readVCF.R | 26 +--
R/concatenate.R | 24 +-
R/fstcalc.R | 4
R/get_gff_info.R | 18 +-
R/get_segsites.R | 2
R/linkdisequ_FAST.R | 18 +-
R/readData.R | 43 +++--
R/readVCF.R | 152 ++++++++++++++----
R/set.synnonsyn.R | 17 +-
R/set_gff_info.R |only
R/splitting.data.R | 5
inst/doc/An_introduction_to_the_PopGenome_package.pdf |binary
inst/doc/Integration_of_new_Methods.pdf |binary
man/PopGplot.Rd | 4
man/Whop_readVCF.Rd | 2
man/readVCF.Rd | 9 -
src/find_lines.c | 101 +++++++++++
src/myReadVCFC.c | 103 ++++++++++--
src/whopgenome/whopgen_codemat.cpp | 2
23 files changed, 466 insertions(+), 132 deletions(-)
Title: IRT models for multiple choice items (mcIRT)
Diff between mcIRT versions 0.40 dated 2014-03-15 and 0.41 dated 2014-08-30
Description: This package provides functions to estimate two popular IRT-models: The Nominal Response Model (Bock 1972) and the quite recently developed Nested Logit Model (Suh & Bolt 2010). These are two models to examine multiple-choice items and other multicategorial response formats.
Author: Manuel Reif
Maintainer: Manuel Reif
DESCRIPTION | 11 ++++++-----
MD5 | 12 ++++++------
NAMESPACE | 1 -
R/Infnelm.R | 14 +++++++++-----
R/Infnrm.R | 17 +++++++++++------
R/reshMG.R | 29 ++++++++++++++++++++---------
data/examp1.RData |binary
7 files changed, 52 insertions(+), 32 deletions(-)
Title: Tuned Data Mining in R
Diff between TDMR versions 1.1 dated 2014-06-06 and 1.2 dated 2014-08-30
Description: Tuned Data Mining in R (TDMR) performs a complete tuning of a data
mining task.
Author: Wolfgang Konen
Maintainer: Wolfgang Konen
TDMR-1.1/TDMR/R/Output |only
TDMR-1.1/TDMR/R/tdmCompleteEval.r |only
TDMR-1.1/TDMR/demo/aaClassify.r |only
TDMR-1.1/TDMR/demo/aaRegression.r |only
TDMR-1.1/TDMR/demo/demo00sonar.r |only
TDMR-1.1/TDMR/demo/demo01cpu.r |only
TDMR-1.1/TDMR/inst/demo01cpu/demo04cpu.RData |only
TDMR-1.1/TDMR/inst/demo02sonar/demoSonarCma_j.RData |only
TDMR-1.1/TDMR/inst/demo02sonar/outcmaesdisp.dat |only
TDMR-1.1/TDMR/inst/demo02sonar/plotEnvtTwiddle.r |only
TDMR-1.1/TDMR/inst/demo02sonar/plotSonarTwiddle.r |only
TDMR-1.1/TDMR/inst/demo02sonar/script_all.R |only
TDMR-1.1/TDMR/inst/demo02sonar/script_phase2.R |only
TDMR-1.1/TDMR/inst/demo02sonar/sonar_01_compact.conf |only
TDMR-1.1/TDMR/inst/demo08trnFrac |only
TDMR-1.1/TDMR/inst/doc/TDMR-docu-Dateien |only
TDMR-1.1/TDMR/inst/doc/TDMR-docu.html |only
TDMR-1.1/TDMR/inst/doc/TDMR-tutorial-Dateien |only
TDMR-1.1/TDMR/inst/doc/TDMR-tutorial.html |only
TDMR-1.1/TDMR/inst/doc/changes-Dateien |only
TDMR-1.1/TDMR/man/tdmCompleteEval.Rd |only
TDMR-1.2/TDMR/DESCRIPTION | 31
TDMR-1.2/TDMR/MD5 | 181 +--
TDMR-1.2/TDMR/NAMESPACE | 4
TDMR-1.2/TDMR/R/tdmBigLoop.r | 74 +
TDMR-1.2/TDMR/R/tdmClassify.r | 59 -
TDMR-1.2/TDMR/R/tdmClassifyLoop.r | 57 -
TDMR-1.2/TDMR/R/tdmDefaultsFill.r | 12
TDMR-1.2/TDMR/R/tdmDispatchTuner.r | 19
TDMR-1.2/TDMR/R/tdmEnvTMakeNew.r | 12
TDMR-1.2/TDMR/R/tdmExecSpotStep.r | 2
TDMR-1.2/TDMR/R/tdmGeneralUtils.r | 13
TDMR-1.2/TDMR/R/tdmGetObj.r | 2
TDMR-1.2/TDMR/R/tdmGraphicUtils.r | 12
TDMR-1.2/TDMR/R/tdmModelingUtils.r | 160 +--
TDMR-1.2/TDMR/R/tdmOptsDefaults.r | 8
TDMR-1.2/TDMR/R/tdmPlotResMeta.r | 15
TDMR-1.2/TDMR/R/tdmPreprocUtils.r | 12
TDMR-1.2/TDMR/R/tdmROCR.r | 10
TDMR-1.2/TDMR/R/tdmReadData.r | 6
TDMR-1.2/TDMR/R/tdmRegress.r | 84 +
TDMR-1.2/TDMR/R/tdmRegressLoop.r | 44
TDMR-1.2/TDMR/R/unbiasedRun.r | 7
TDMR-1.2/TDMR/demo/00Index | 27
TDMR-1.2/TDMR/demo/demo00-0classif.r |only
TDMR-1.2/TDMR/demo/demo00-1regress.r |only
TDMR-1.2/TDMR/demo/demo01-1sonar.r |only
TDMR-1.2/TDMR/demo/demo01-2cpu.r |only
TDMR-1.2/TDMR/demo/demo02sonar.r | 23
TDMR-1.2/TDMR/demo/demo03newdata.r |only
TDMR-1.2/TDMR/demo/demo03sonar.r | 42
TDMR-1.2/TDMR/demo/demo03sonar_B.r | 19
TDMR-1.2/TDMR/demo/demo04cpu.r | 32
TDMR-1.2/TDMR/demo/demo06ROCR.r | 20
TDMR-1.2/TDMR/inst/demo01cpu/script_all.R | 1
TDMR-1.2/TDMR/inst/demo01cpu/start_bigLoop.r |only
TDMR-1.2/TDMR/inst/demo02sonar/demo03.RData |binary
TDMR-1.2/TDMR/inst/demo02sonar/sonar_00.apd | 17
TDMR-1.2/TDMR/inst/demo02sonar/sonar_01.apd | 1
TDMR-1.2/TDMR/inst/demo02sonar/sonar_01.conf | 2
TDMR-1.2/TDMR/inst/demo02sonar/sonar_04.apd | 1
TDMR-1.2/TDMR/inst/demo02sonar/sonar_04.conf | 4
TDMR-1.2/TDMR/inst/demo02sonar/sonar_06.apd |only
TDMR-1.2/TDMR/inst/demo02sonar/sonar_06.conf |only
TDMR-1.2/TDMR/inst/demo02sonar/sonar_06.roi |only
TDMR-1.2/TDMR/inst/demo02sonar/start_bigLoop.r |only
TDMR-1.2/TDMR/inst/demo02sonar/start_rerun.r |only
TDMR-1.2/TDMR/inst/demo02sonar/start_sonar.r |only
TDMR-1.2/TDMR/inst/doc/TDMR-docu.pdf |only
TDMR-1.2/TDMR/inst/doc/TDMR-tutorial.pdf |only
TDMR-1.2/TDMR/inst/doc/aareadme.txt | 16
TDMR-1.2/TDMR/inst/doc/changes.html | 998 ++++---------------
TDMR-1.2/TDMR/inst/doc/index.html | 155 --
TDMR-1.2/TDMR/inst/examples/ex_demo04Par.r | 2
TDMR-1.2/TDMR/inst/examples/ex_tdmClassify.r |only
TDMR-1.2/TDMR/inst/examples/ex_tdmClassifyLoop.r |only
TDMR-1.2/TDMR/inst/examples/ex_tdmRegress.r |only
TDMR-1.2/TDMR/inst/examples/ex_tdmRegressLoop.r |only
TDMR-1.2/TDMR/man/TDMR-package.Rd | 2
TDMR-1.2/TDMR/man/tdmBigLoop.Rd | 82 -
TDMR-1.2/TDMR/man/tdmClassify.Rd | 31
TDMR-1.2/TDMR/man/tdmClassifyLoop.Rd | 13
TDMR-1.2/TDMR/man/tdmDefaultsFill.Rd | 20
TDMR-1.2/TDMR/man/tdmEnvTMakeNew.Rd | 7
TDMR-1.2/TDMR/man/tdmOptsDefaultsFill.Rd | 3
TDMR-1.2/TDMR/man/tdmOptsDefaultsSet.Rd | 16
TDMR-1.2/TDMR/man/tdmROCRbase.Rd | 20
TDMR-1.2/TDMR/man/tdmReadData.Rd | 16
TDMR-1.2/TDMR/man/tdmRegress.Rd | 56 -
TDMR-1.2/TDMR/man/tdmRegressLoop.Rd | 19
TDMR-1.2/TDMR/man/unbiasedRun.Rd | 4
91 files changed, 975 insertions(+), 1498 deletions(-)
Title: Person Parameter estimation
Diff between PP versions 0.2-1 dated 2013-12-29 and 0.5 dated 2014-08-30
Description: The PP package includes estimation of (MLE, WLE, MAP, EAP, ROBUST)
person parameters for the 1,2,3,4-PL model and the GPCM (generalized
partial credit model). The parameters are estimated under the assumption
that the item parameters are known and fixed. The package could be useful
when items from an itempool/itembank with known item parameters are
administered to a new population of testtakers and an ability estimation
for every testtaker is needed.
Author: Manuel Reif
Maintainer: Manuel Reif
PP-0.2-1/PP/R/DELTA_mle.R |only
PP-0.2-1/PP/R/PP_3PLmle.R |only
PP-0.2-1/PP/R/PP_3PLwle.R |only
PP-0.2-1/PP/R/PP_GPCMmle.R |only
PP-0.2-1/PP/R/PP_GPCMwle.R |only
PP-0.2-1/PP/R/PP_RMmle.R |only
PP-0.2-1/PP/R/PP_RMwle.R |only
PP-0.2-1/PP/R/co_3PL.R |only
PP-0.2-1/PP/R/co_gpcm.R |only
PP-0.2-1/PP/R/gpcm_mle_func.R |only
PP-0.2-1/PP/R/gpcm_wle_func.R |only
PP-0.2-1/PP/R/summary.PPd.R |only
PP-0.2-1/PP/R/summary.PPp.R |only
PP-0.2-1/PP/R/summary.PPr.R |only
PP-0.2-1/PP/inst/tests |only
PP-0.2-1/PP/man/PP-package.Rd |only
PP-0.2-1/PP/man/PP_3PLmle.Rd |only
PP-0.2-1/PP/man/PP_3PLwle.Rd |only
PP-0.2-1/PP/man/PP_GPCMmle.Rd |only
PP-0.2-1/PP/man/PP_GPCMwle.Rd |only
PP-0.2-1/PP/man/PP_RMmle.Rd |only
PP-0.2-1/PP/man/PP_RMwle.Rd |only
PP-0.2-1/PP/man/summary.PPd.Rd |only
PP-0.2-1/PP/man/summary.PPp.Rd |only
PP-0.2-1/PP/man/summary.PPr.Rd |only
PP-0.2-1/PP/tests/run-all.R |only
PP-0.5/PP/DESCRIPTION | 30 +++++++++++------
PP-0.5/PP/MD5 | 70 ++++++++++++++++++++++++-----------------
PP-0.5/PP/NAMESPACE | 35 +++++++++++++-------
PP-0.5/PP/R/JKpp.R |only
PP-0.5/PP/R/PP.R |only
PP-0.5/PP/R/PP_4pl.R |only
PP-0.5/PP/R/PP_gpcm.R |only
PP-0.5/PP/R/PPall.R |only
PP-0.5/PP/R/PV.R |only
PP-0.5/PP/R/RcppExports.R |only
PP-0.5/PP/R/checkINP.R |only
PP-0.5/PP/R/dataRd.R |only
PP-0.5/PP/R/eap.R |only
PP-0.5/PP/R/findmodel.R |only
PP-0.5/PP/R/make_dup.R |only
PP-0.5/PP/R/pkg_start.R |only
PP-0.5/PP/R/prints.R |only
PP-0.5/PP/R/quadIT.R |only
PP-0.5/PP/R/sim_gpcm.R |only
PP-0.5/PP/R/stdrdize_hist.R |only
PP-0.5/PP/data |only
PP-0.5/PP/inst/CITATION |only
PP-0.5/PP/man/Jkpp.Rd |only
PP-0.5/PP/man/PP.Rd |only
PP-0.5/PP/man/PP_4pl.Rd |only
PP-0.5/PP/man/PP_gpcm.Rd |only
PP-0.5/PP/man/PPall.Rd |only
PP-0.5/PP/man/PV.Rd |only
PP-0.5/PP/man/findmodel.Rd |only
PP-0.5/PP/man/fourpl_df.Rd |only
PP-0.5/PP/man/sim_4pl.Rd |only
PP-0.5/PP/man/sim_gpcm.Rd |only
PP-0.5/PP/src |only
PP-0.5/PP/tests/test-all.R |only
PP-0.5/PP/tests/testthat |only
PP-0.5/PP/vignettes |only
62 files changed, 84 insertions(+), 51 deletions(-)
Title: R Client for Adobe Analytics API v1.4
Diff between RSiteCatalyst versions 1.3.3 dated 2014-04-12 and 1.4.0 dated 2014-08-30
Description: Functions for accessing the Adobe Analytics Reporting API
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch
RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetAdminConsoleLog.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetAvailableElements.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetAvailableMetrics.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetRealTimeConfiguration.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetReportQueue.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetTokenCount.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/GetTrafficVars.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/RSiteCatalyst-package.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/SaveRealTimeConfiguration.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/buildURL.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/getReport.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/getStatus.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/jsonResponseError.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/R/postRequest.R |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetAdminConsoleLog.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetAvailableElements.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetAvailableMetrics.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetEVars.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetRealTimeConfiguration.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetReportQueue.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetTokenCount.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/GetTrafficVars.Rd |only
RSiteCatalyst-1.3.3/RSiteCatalyst/man/SaveRealTimeConfiguration.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/DESCRIPTION | 22
RSiteCatalyst-1.4.0/RSiteCatalyst/LICENSE |only
RSiteCatalyst-1.4.0/RSiteCatalyst/MD5 | 126 ++-
RSiteCatalyst-1.4.0/RSiteCatalyst/NAMESPACE | 55 +
RSiteCatalyst-1.4.0/RSiteCatalyst/NEWS | 11
RSiteCatalyst-1.4.0/RSiteCatalyst/R/ApiRequest.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/BuildClassificationValueSegment.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/BuildInnerBreakdownsRecursively.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/BuildLineItemSegment.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/BuildRealTimeReportStructure.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/CancelReport.R | 78 +-
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetClassifications.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetEVars.R | 114 ---
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetElements.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetEndpoint.R | 30
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetMetrics.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetProps.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetQueue.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetRealTimeReport.R | 223 ++----
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetRealTimeSettings.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetReportSuites.R | 56 -
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetSegments.R | 104 --
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetSuccessEvents.R | 107 +-
RSiteCatalyst-1.4.0/RSiteCatalyst/R/GetUsageLog.R | 98 --
RSiteCatalyst-1.4.0/RSiteCatalyst/R/JsonQueueRealTimeReport.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/JsonQueueReport.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/ParseFallout.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/ParseOvertime.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/ParsePathing.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/ParseRanked.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/ParseTrended.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/QueueFallout.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/QueueOvertime.R | 252 +-----
RSiteCatalyst-1.4.0/RSiteCatalyst/R/QueuePathing.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/QueueRanked.R | 363 ++--------
RSiteCatalyst-1.4.0/RSiteCatalyst/R/QueueTrended.R | 363 +++-------
RSiteCatalyst-1.4.0/RSiteCatalyst/R/RSiteCatalyst.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/SCAuth.R | 171 +++-
RSiteCatalyst-1.4.0/RSiteCatalyst/R/SaveRealTimeSettings.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/ValidateReport.R |only
RSiteCatalyst-1.4.0/RSiteCatalyst/R/buildHeader.R | 44 -
RSiteCatalyst-1.4.0/RSiteCatalyst/man/ApiRequest.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/BuildClassificationValueSegment.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/BuildHeader.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/BuildInnerBreakdownsRecursively.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/BuildLineItemSegment.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/BuildRealTimeReportStructure.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/CancelReport.Rd | 21
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetClassifications.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetElements.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetEndpoint.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetEvars.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetMetrics.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetProps.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetQueue.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetRealTimeReport.Rd | 108 --
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetRealTimeSettings.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetReportSuites.Rd | 12
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetSegments.Rd | 21
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetSuccessEvents.Rd | 22
RSiteCatalyst-1.4.0/RSiteCatalyst/man/GetUsageLog.Rd | 51 -
RSiteCatalyst-1.4.0/RSiteCatalyst/man/JsonQueueRealTimeReport.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/JsonQueueReport.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/ParseFallout.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/ParseOvertime.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/ParsePathing.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/ParseRanked.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/ParseTrended.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/QueueFallout.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/QueueOvertime.Rd | 109 +--
RSiteCatalyst-1.4.0/RSiteCatalyst/man/QueuePathing.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/QueueRanked.Rd | 128 +--
RSiteCatalyst-1.4.0/RSiteCatalyst/man/QueueTrended.Rd | 137 +--
RSiteCatalyst-1.4.0/RSiteCatalyst/man/RSiteCatalyst.Rd | 38 -
RSiteCatalyst-1.4.0/RSiteCatalyst/man/SCAuth.Rd | 51 -
RSiteCatalyst-1.4.0/RSiteCatalyst/man/SaveRealTimeSettings.Rd |only
RSiteCatalyst-1.4.0/RSiteCatalyst/man/ValidateReport.Rd |only
100 files changed, 1161 insertions(+), 1754 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-22 0.2-0
2012-06-18 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-13 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-13 0.1
Title: Mathematical Modeling of Infectious Disease
Diff between EpiModel versions 1.0.1 dated 2014-07-29 and 1.0.2 dated 2014-08-30
Description: Tools for simulating mathematical models of infectious disease.
Epidemic model classes include deterministic compartmental models,
stochastic individual contact models, and stochastic network models.
Disease types include SI, SIR, and SIS epidemics with and without
demography, with tools available for expansion to model complex epidemic
processes.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Li Wang [ctb]
Maintainer: Samuel Jenness
DESCRIPTION | 8
MD5 | 120 ++++++------
NAMESPACE | 5
NEWS | 38 +++
R/as.data.frame.R | 6
R/conc.microsim.R | 363 +++++++++++++++++++-------------------
R/control.R | 4
R/crosscheck.R | 61 +++++-
R/dcm.R | 8
R/dcm.mods.R | 36 +--
R/icm.R | 11 -
R/icm.mod.status.R | 4
R/merge.R | 4
R/net.mod.init.R | 4
R/net.mod.simnet.R | 7
R/net.mod.status.R | 26 +-
R/net.mod.vital.R | 2
R/net.utils.R | 297 +++++++++++++++----------------
R/netdx.R | 25 +-
R/netest.R | 15 -
R/netsim.R | 4
R/param.R | 27 +-
R/plot.R | 108 ++++-------
R/print.r | 6
R/summary.R | 24 +-
R/utils.R | 2
R/zzz.R | 11 -
inst/doc/Intro.R | 1
inst/doc/Intro.Rnw | 11 -
inst/doc/Intro.pdf |binary
man/as.data.frame.dcm.Rd | 4
man/as.data.frame.icm.Rd | 2
man/comp_plot.Rd | 4
man/conc_microsim.Rd | 1
man/copy_toall_attr.Rd |only
man/dcm.Rd | 8
man/dissolution_coefs.Rd | 1
man/get_attr_prop.Rd |only
man/get_formula_terms.Rd |only
man/icm.Rd | 8
man/merge.icm.Rd | 2
man/merge.netsim.Rd | 2
man/netest.Rd | 15 -
man/netsim.Rd | 4
man/param.dcm.Rd | 12 -
man/param.icm.Rd | 12 -
man/param.net.Rd | 11 -
man/plot.conc_microsim.Rd | 1
man/plot.dcm.Rd | 15 -
man/plot.icm.Rd | 14 -
man/plot.netsim.Rd | 2
man/split_bip.Rd |only
man/summary.dcm.Rd | 2
man/summary.icm.Rd | 2
man/summary.netsim.Rd | 4
man/update_nwattr.Rd |only
tests/testthat/test-dcm.R | 42 ++--
tests/testthat/test-diagnostics.R | 42 ++++
tests/testthat/test-icm.R | 30 +--
tests/testthat/test-merge.R | 4
tests/testthat/test-netattr.R | 22 +-
tests/testthat/test-netsim.R | 20 +-
tests/testthat/test-netvary.R |only
vignettes/Intro.Rnw | 11 -
64 files changed, 831 insertions(+), 704 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-11 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-17 0.9.5.1
2012-03-21 0.9.5
2009-10-14 0.9.2
2008-07-08 0.9
2007-02-11 0.8.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-22 0.8
2011-05-23 0.7
2011-04-01 0.6
2011-02-11 0.5
2009-08-06 0.4
2009-07-18 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-07 1.0-1
2013-04-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-13 2.0.3
2012-09-11 2.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-16 1.0-0
2014-02-28 0.9-7
2013-04-25 0.9-6
2013-01-22 0.9.5
2013-01-17 0.9.4
2012-07-19 0.9.3
2012-01-09 0.9.2
2011-08-22 0.9.1
2011-08-20 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-30 0.9-7
2013-03-20 0.9-6
2012-03-14 0.9-5
2010-02-12 0.9-4
2009-09-24 0.9-3
2009-08-10 0.9-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-01-18 2.2
2009-07-01 2.1
2009-06-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-02 1.0-5
2009-02-09 1.0-4
2008-06-18 1.0-3
2008-06-02 1.0-1
2008-05-30 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-23 2.16-2
2012-07-05 2.11-2
2012-05-30 2.11-1
2012-01-13 2.9-4
2011-12-27 2.9
Title: Stochastic Newton Sampler (SNS)
Diff between sns versions 0.9 dated 2014-08-25 and 0.9.1 dated 2014-08-30
Description: Multivariate, Markov Chain Monte Carlo sampler for twice differentiable, log-concave probability densities. SNS is a Metropolis-Hastings variant, where the proposal function is a local Gaussian approximation to the density obtained via a second order Taylor expansion around the current point. The mean of the Gaussian proposal is taken as the full Newton-Raphson step from the current point. During burn-in, Newton-Raphson optimization is performed to get close to the mode of the pdf which is unique due to convexity.
Author: Alireza S. Mahani, Asad Hasan, Marshall Jiang, Mansour T.A. Sharabiani
Maintainer: Asad Hasan
DESCRIPTION | 14 +++++++-------
MD5 | 12 ++++++------
NEWS | 9 +++++++--
R/sns.R | 8 ++++++--
man/bayesGLM.Rd | 4 ++--
man/ess.Rd | 6 +++---
man/sns.Rd | 14 +++++++-------
7 files changed, 38 insertions(+), 29 deletions(-)