Sun, 31 Aug 2014

Package RNetCDF updated to version 1.6.3-1 with previous version 1.6.2-3 dated 2014-06-16

Title: R Interface to NetCDF Datasets
Description: This package provides an interface to Unidata's NetCDF library functions (version 3) and furthermore access to Unidata's UDUNITS calendar conversions. The routines and the documentation follow the NetCDF and UDUNITS C interface, so the corresponding manuals can be consulted for more detailed information.
Author: Pavel Michna
Maintainer: Pavel Michna

Diff between RNetCDF versions 1.6.2-3 dated 2014-06-16 and 1.6.3-1 dated 2014-08-31

 DESCRIPTION          |    6 +++---
 INSTALL              |    4 ++--
 MD5                  |   14 +++++++-------
 R/RNetCDF.R          |   46 +++++++++++++++-------------------------------
 configure            |   18 +++++++++---------
 configure.ac         |    2 +-
 src/RNetCDF.c        |    2 +-
 tests/RNetCDF-test.R |    2 +-
 8 files changed, 39 insertions(+), 55 deletions(-)

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Package ngramr updated to version 1.4.5 with previous version 1.4.3 dated 2014-02-01

Title: Retrieve and plot Google n-gram data
Description: Retrieve and plot word frequencies through time from the Google Ngram Viewer
Author: Sean Carmody
Maintainer: Sean Carmody

Diff between ngramr versions 1.4.3 dated 2014-02-01 and 1.4.5 dated 2014-08-31

 DESCRIPTION         |    6 +-
 MD5                 |   30 +++++++-------
 NAMESPACE           |    2 
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 man/ngrami.Rd       |    7 +--
 man/ngramr.Rd       |   61 ++++++++++++-----------------
 man/ngramw.Rd       |   10 ++--
 man/print.ngram.Rd  |    9 +---
 man/theme_google.Rd |    3 -
 16 files changed, 152 insertions(+), 149 deletions(-)

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Package chemosensors updated to version 0.7.8 with previous version 0.7.7 dated 2013-10-09

Title: A tool for the design of synthetic experiments in machine olfaction.
Description: This package introduces a software tool for the design of synthetic experiments in machine olfaction. The generator of gas sensor signals can be used in applications related to test and benchmarking of signal processing methods, neuromorphic simulations in machine olfaction and educational tools. A so-called virtual sensor array features unlimited number of sensors, support of multicomponent gas mixtures and full parametric control of the noise in the system. The artificial (virtual) sensor array is inspired from a reference database of seventeen polymeric sensors with concentration profiles for three analytes.
Author: Alexandre Perera-Lluna and Andrey Ziyatdinov
Maintainer: Andrey Ziyatdinov

Diff between chemosensors versions 0.7.7 dated 2013-10-09 and 0.7.8 dated 2014-08-31

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 chemosensors-0.7.8/chemosensors/MD5                          |   12 +++----
 chemosensors-0.7.8/chemosensors/NEWS                         |    6 +++
 chemosensors-0.7.8/chemosensors/R/SensorModelClassMethods.R  |   15 +++++----
 chemosensors-0.7.8/chemosensors/R/affinity.lib.R             |    4 +-
 chemosensors-0.7.8/chemosensors/inst/CITATION                |   17 +++++++++--
 8 files changed, 42 insertions(+), 22 deletions(-)

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Package chords updated to version 0.90 with previous version 0.67 dated 2012-09-05

Title: Estimation in respondent driven samples.
Description: Maximum likelihood estimation in respondent driven samples.
Author: Jonathan Rosenblatt
Maintainer: Jonathan Rosenblatt

Diff between chords versions 0.67 dated 2012-09-05 and 0.90 dated 2014-08-31

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Package CDM updated to version 3.4-21 with previous version 3.3-24 dated 2014-05-25

Title: Cognitive Diagnosis Modeling
Description: Functions for cognitive diagnosis modeling and multidimensional item response modeling for dichotomous and polytomous data. This package enables the estimation of the DINA and DINO model, the multiple group (polytomous) GDINA model, the multiple choice DINA model, the general diagnostic model (GDM), the multidimensional linear compensatory item response model and the structured latent class model (SLCA).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut], Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch

Diff between CDM versions 3.3-24 dated 2014-05-25 and 3.4-21 dated 2014-08-31

 DESCRIPTION                                    |   13 
 MD5                                            |   83 ++--
 NAMESPACE                                      |    2 
 R/din.R                                        |    3 
 R/gdina.R                                      |   33 +
 R/itemfit.sx2_aux.R                            |    6 
 R/mcdina.simul.R                               |    8 
 R/modelfit.cor.din.R                           |   12 
 R/modelfit.cor2.R                              |    5 
 R/skillspace.hierarchy.R                       |    4 
 inst/NEWS                                      |  442 +++++++++++++------------
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 man/data.mg.Rd                                 |   34 -
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 man/din.Rd                                     |   64 +--
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 man/gdm.Rd                                     |   74 +---
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 man/mcdina.Rd                                  |    3 
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 man/sim.din.Rd                                 |   16 
 man/skillspace.approximation.Rd                |   20 -
 man/skillspace.hierarchy.Rd                    |   36 +-
 man/slca.Rd                                    |   62 +--
 src/itemfit_sx2_calc_scoredistribution_cdm.cpp |only
 43 files changed, 1172 insertions(+), 970 deletions(-)

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New package lbfgs with initial version 1.2.1
Package: lbfgs
Type: Package
Title: Limited-memory BFGS Optimization
Version: 1.2.1
Date: 2014-07-08
Authors@R: c(person("Antonio", "Coppola", role = c("aut", "cre", "cph"), email = "acoppola@college.harvard.edu"), person("Brandon", "Stewart", role = c("aut", "cph")), person("Naoaki", "Okazaki", role = c("aut", "cph")), person("David", "Ardia", role = c("ctb", "cph")), person("Dirk", "Eddelbuettel", role = c("ctb", "cph")), person("Katharine", "Mullen", role = c("ctb", "cph")), person("Jorge", "Nocedal", role = c("ctb", "cph")))
Maintainer: Antonio Coppola
Description: A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implements both the Limited-memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS) and the Orthant-Wise Quasi-Newton Limited-Memory (OWL-QN) optimization algorithms. The L-BFGS algorithm solves the problem of minimizing an objective, given its gradient, by iteratively computing approximations of the inverse Hessian matrix. The OWL-QN algorithm finds the optimum of an objective plus the L1-norm of the problem's parameters. The package offers a fast and memory-efficient implementation of these optimization routines, which is particularly suited for high-dimensional problems.
License: GPL (>= 2)
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp
Packaged: 2014-08-30 10:14:37 UTC; antonio12
Author: Antonio Coppola [aut, cre, cph], Brandon Stewart [aut, cph], Naoaki Okazaki [aut, cph], David Ardia [ctb, cph], Dirk Eddelbuettel [ctb, cph], Katharine Mullen [ctb, cph], Jorge Nocedal [ctb, cph]
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-08-31 11:23:32

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Package pmg updated to version 0.9-43 with previous version 0.9-42 dated 2010-03-09

Title: Poor Man's GUI
Description: Simple GUI for R using gWidgets.
Author: John Verzani with contributions by Yvonnick Noel
Maintainer: John Verzani

Diff between pmg versions 0.9-42 dated 2010-03-09 and 0.9-43 dated 2014-08-31

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 pmg-0.9-43/pmg/R/WindowCollector.R        |   20 -
 pmg-0.9-43/pmg/R/YN.R                     |  400 ++++++++++++++----------------
 pmg-0.9-43/pmg/R/aaa.pmg.gw.R             |    7 
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New package SimuChemPC with initial version 1.3
Package: SimuChemPC
Type: Package
Title: Simulation process of 4 selection methods in predicting chemical potent compounds
Version: 1.3
Date: 2014-02-23
Author: Mohsen Ahmadi
Maintainer: Mohsen Ahmadi
Description: This package provides simulation process of 4 selection methods in predicting potent compounds
License: GPL-3
Depends: stats, graphics, grDevices, utils, rcdk, R (>= 2.13)
Packaged: 2014-02-24 22:53:35 UTC; M0H3N
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-02-25 07:44:36

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New package rcdklibs with initial version 1.5.8.4
Package: rcdklibs
Version: 1.5.8.4
Date: 2014-08-30
Title: rcdklib - CDK libraries packaged for R
Authors@R: c(person('Rajarshi', 'Guha', role=c('aut','cre'), email='rajarshi.guha@gmail.com'), person('CDK Project', '', role=c('ctb', 'cph'), comment='CDK Java library contained in multiple jar files'))
Maintainer: Rajarshi Guha
Depends: R (>= 2.0.0), rJava
License: LGPL
Description: This package provides the CDK libraries for use in the R environment. Given the size of the library itself, this package is not expected to change very frequently. To make use of the CDK within R, it is suggested that you use the rcdk package. Note that it is possible to directly interact with the CDK using rJava. However rcdk exposes functionality in a more idiomatic way. The CDK library itself is released as LGPL and the sources can be obtained from https://github.com/cdk/cdk
Packaged: 2014-08-30 17:36:06 UTC; guhar
Author: Rajarshi Guha [aut, cre], CDK Project [ctb, cph] (CDK Java library contained in multiple jar files)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-31 08:05:15

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New package rcdk with initial version 3.3.0
Package: rcdk
Version: 3.3.0
Date: 2014-08-30
Title: rcdk - Interface to the CDK Libraries
Authors@R: c(person('Rajarshi', 'Guha', role=c('aut','cre', 'cph'), email='rajarshi.guha@gmail.com'))
Maintainer: Rajarshi Guha
Depends: fingerprint
Imports: rJava, rcdklibs (>= 1.5.8), methods, png, iterators
Suggests: xtable, RUnit
License: LGPL
LazyLoad: yes
Description: This package allows the user to access functionality in the CDK, a Java framework for cheminformatics. This allows the user to load molecules, evaluate fingerprints, calculate molecular descriptors and so on. In addition the CDK API allows the user to view structures in 2D.
Packaged: 2014-08-30 17:36:06 UTC; guhar
Author: Rajarshi Guha [aut, cre, cph]
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-08-31 08:05:15

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