Title: eXtreme Gradient Boosting
Diff between xgboost versions 0.3-1 dated 2014-09-07 and 0.3-2 dated 2014-09-07
Description: This package is a R wrapper of xgboost, which is short for eXtreme
Gradient Boosting. It is an efficient and scalable implementation of
gradient boosting framework. The package includes efficient linear model
solver and tree learning algorithms. The package can automatically do
parallel computation with OpenMP, and it can be more than 10 times faster
than existing gradient boosting packages such as gbm. It supports various
objective functions, including regression, classification and ranking. The
package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen
Maintainer: Tong He
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/utils.R | 18 ++----------------
3 files changed, 7 insertions(+), 21 deletions(-)
Title: Joint Analysis of Genotype and Group-specific Variability Using
a Novel Score Test Approach to Map eQTL
Diff between JAGUAR versions 1.0 dated 2014-09-05 and 1.1 dated 2014-09-07
Description: Implements a 2 degree-of-freedom score test that measures 1) the overall shift in the gene expression due to genotype, and 2) group-specific changes in gene expression due to genotype (interaction term) in a mixed-effects model framework.
Author: Chaitanya R. Acharya and Andrew S. Allen
Maintainer: Chaitanya Acharya
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
NAMESPACE | 2 +-
R/JAGUAR.R | 2 +-
4 files changed, 9 insertions(+), 9 deletions(-)
Title: Extremely Randomized Trees (ExtraTrees) method for
classification and regression
Diff between extraTrees versions 1.0.2 dated 2014-08-29 and 1.0.3 dated 2014-09-07
Description: Classification and regression based on an ensemble of decision trees. The package also provides extensions of ExtraTrees to multi-task learning and quantile regression. Uses Java implementation of the method.
Author: Jaak Simm, Ildefons Magrans de Abril
Maintainer: Jaak Simm
DESCRIPTION | 14 +++++++-------
MD5 | 14 ++++++++------
inst/CHANGELOG | 5 +++++
inst/CITATION |only
inst/doc/extraTrees.pdf |binary
inst/java/ExtraTrees.jar |binary
inst/tests/testthat/test-quantile.r |only
java/src/org/extratrees/QuantileExtraTrees.java | 3 +--
man/extraTrees.Rd | 18 ++++++++++++++++++
9 files changed, 39 insertions(+), 15 deletions(-)
Title: Implementation of Unobserved Components Model (UCM) in R
Diff between rucm versions 0.3 dated 2014-08-26 and 0.4 dated 2014-09-07
Description: Unobserved Components Models (introduced in Harvey, A. (1989),
Forecasting, structural time series models and the Kalman filter, Cambridge
New York: Cambridge University Press) decomposes a time series into
components such as trend, seasonal, cycle, and the regression effects due
to predictor series which captures the salient features of the series to
predict its behavior.
Author: Kaushik Roy Chowdhury
Maintainer: Kaushik Roy Chowdhury
DESCRIPTION | 10 ++++++----
MD5 | 27 +++++++++++++++++----------
NAMESPACE | 3 ++-
NEWS |only
R/predict.ucm.R | 4 ++--
R/print.ucm.R | 15 +++++++++++----
R/rucm-package.R | 12 +++++++++---
R/ucm.R | 13 +++++++++++--
build |only
inst |only
man/predict.ucm.Rd | 6 +++---
man/print.ucm.Rd | 2 +-
man/rucm-package.Rd | 12 +++++++++---
man/ucm.Rd | 4 ++--
vignettes |only
15 files changed, 73 insertions(+), 35 deletions(-)
Title: Implementation of sampling formulas for the unified neutral
model of biodiversity and biogeography, with or without guild
structure.
Diff between GUILDS versions 1.1 dated 2014-09-06 and 1.2 dated 2014-09-07
Description: The GUILDS package combines a range of sampling formulas for the unified neutral model of biogeography and biodiversity. Alongside the sampling formulas, it includes methods to perform maximum likelihood optimization of the sampling formulas, methods to generate data given the neutral model, and methods to estimate the expected species abundance distribution. Sampling formulas included in the GUILDS package are the Etienne Sampling Formula (Etienne 2005), the guild sampling formula, where guilds are assumed to differ in dispersal ability (Janzen 2014), and the guilds sampling formula conditioned on guild size (Janzen 2014).
Author: Thijs Janzen
Maintainer: Thijs Janzen
GUILDS-1.1/GUILDS/src/KDA_R2.h |only
GUILDS-1.2/GUILDS/DESCRIPTION | 6 -
GUILDS-1.2/GUILDS/MD5 | 7 -
GUILDS-1.2/GUILDS/man/GUILDS-package.Rd | 5
GUILDS-1.2/GUILDS/src/KDA_R.cpp | 191 +++++++++++++++-----------------
5 files changed, 104 insertions(+), 105 deletions(-)
Title: Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Diff between evmix versions 2.1 dated 2014-06-04 and 2.3 dated 2014-09-07
Description: The usual distribution functions, maximum likelihood inference and
model diagnostics for univariate stationary extreme value mixture models
are provided. Kernel density estimation including various boundary
corrected kernel density estimation methods and a wide choice of kernels,
with cross-validation likelihood based bandwidth estimator.
Reasonable consistency with the base functions in the evd package is
provided, so that users can safely interchange most code.
Author: Carl Scarrott and Yang Hu, University of Canterbury
Maintainer: Carl Scarrott
DESCRIPTION | 10
MD5 | 119 +++++-----
NAMESPACE | 33 ++
R/ddwm.r | 6
R/ditmgng.r |only
R/ditmnormgpd.r |only
R/ditmweibullgpd.r |only
R/evmix-package.r | 6
R/evmixdiag.r | 319 ++++++++++++++++++---------
R/fbckdengpd.r | 21 +
R/fbckdengpdcon.r | 21 +
R/fbetagpd.r | 23 +
R/fbetagpdcon.r | 23 +
R/fdwm.r | 10
R/fgammagpd.r | 23 +
R/fgammagpdcon.r | 23 +
R/fgkg.r | 32 +-
R/fgkgcon.r | 32 +-
R/fgng.r | 34 +-
R/fgngcon.r | 34 +-
R/fgpd.r | 8
R/fhpd.r | 8
R/fhpdcon.r | 22 +
R/fitmgng.r |only
R/fitmnormgpd.r |only
R/fitmweibullgpd.r |only
R/fkdengpd.r | 23 +
R/fkdengpdcon.r | 20 +
R/flognormgpd.r | 23 +
R/flognormgpdcon.r | 23 +
R/fmgamma.r | 17 -
R/fmgammagpd.r | 31 +-
R/fmgammagpdcon.r | 31 +-
R/fnormgpd.r | 28 +-
R/fnormgpdcon.r | 23 +
R/fweibullgpd.r | 31 +-
R/fweibullgpdcon.r | 31 +-
R/hillplot.r |only
R/mrlplot.r | 120 ++++++----
R/pickandsplot.r |only
R/tcplot.r | 267 ++++++++++++++--------
R/undocumented.r | 67 +++++
inst/CITATION | 4
inst/doc/HuScarrott_Submitted_compressed.pdf |only
inst/doc/Rd2.pdf |binary
man/dwm.Rd | 6
man/evmix-package.Rd | 6
man/evmix.diag.Rd | 17 -
man/fgkg.Rd | 9
man/fgkgcon.Rd | 9
man/fgng.Rd | 59 +++-
man/fgngcon.Rd | 59 +++-
man/fitmgng.Rd |only
man/fitmnormgpd.Rd |only
man/fitmweibullgpd.Rd |only
man/fnormgpd.Rd | 56 +++-
man/fnormgpdcon.Rd | 56 +++-
man/gng.Rd | 54 +++-
man/gngcon.Rd | 54 +++-
man/hillplot.Rd |only
man/internal.Rd | 20 +
man/itmgng.Rd |only
man/itmnormgpd.Rd |only
man/itmweibullgpd.Rd |only
man/mrlplot.Rd | 18 -
man/normgpd.Rd | 48 +++-
man/normgpdcon.Rd | 48 +++-
man/pickandsplot.Rd |only
man/tcplot.Rd | 33 +-
69 files changed, 1413 insertions(+), 685 deletions(-)
Title: eXtreme Gradient Boosting
Diff between xgboost versions 0.3-0 dated 2014-09-01 and 0.3-1 dated 2014-09-07
Description: This package is a R wrapper of xgboost, which is short for eXtreme
Gradient Boosting. It is an efficient and scalable implementation of
gradient boosting framework. The package includes efficient linear model
solver and tree learning algorithms. The package can automatically do
parallel computation with OpenMP, and it can be more than 10 times faster
than existing gradient boosting packages such as gbm. It supports various
objective functions, including regression, classification and ranking. The
package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen
Maintainer: Tong He
xgboost-0.3-0/xgboost/inst |only
xgboost-0.3-1/xgboost/DESCRIPTION | 24 +-
xgboost-0.3-1/xgboost/MD5 | 134 ++++++------
xgboost-0.3-1/xgboost/NAMESPACE | 2
xgboost-0.3-1/xgboost/R/getinfo.xgb.DMatrix.R | 11
xgboost-0.3-1/xgboost/R/predict.xgb.Booster.R | 25 +-
xgboost-0.3-1/xgboost/R/setinfo.xgb.DMatrix.R |only
xgboost-0.3-1/xgboost/R/slice.xgb.DMatrix.R | 6
xgboost-0.3-1/xgboost/R/utils.R | 127 +++++++++--
xgboost-0.3-1/xgboost/R/xgb.DMatrix.R | 10
xgboost-0.3-1/xgboost/R/xgb.DMatrix.save.R | 14 -
xgboost-0.3-1/xgboost/R/xgb.cv.R |only
xgboost-0.3-1/xgboost/R/xgb.dump.R | 19 +
xgboost-0.3-1/xgboost/R/xgb.load.R | 14 -
xgboost-0.3-1/xgboost/R/xgb.save.R | 14 -
xgboost-0.3-1/xgboost/R/xgb.train.R | 73 ++----
xgboost-0.3-1/xgboost/R/xgboost.R | 98 ++++++--
xgboost-0.3-1/xgboost/README.md | 17 +
xgboost-0.3-1/xgboost/data |only
xgboost-0.3-1/xgboost/demo |only
xgboost-0.3-1/xgboost/man/agaricus.test.Rd |only
xgboost-0.3-1/xgboost/man/agaricus.train.Rd |only
xgboost-0.3-1/xgboost/man/getinfo.Rd | 11
xgboost-0.3-1/xgboost/man/predict-xgb.Booster-method.Rd | 23 +-
xgboost-0.3-1/xgboost/man/setinfo.Rd |only
xgboost-0.3-1/xgboost/man/slice.Rd | 6
xgboost-0.3-1/xgboost/man/xgb.DMatrix.Rd | 10
xgboost-0.3-1/xgboost/man/xgb.DMatrix.save.Rd | 12 -
xgboost-0.3-1/xgboost/man/xgb.cv.Rd |only
xgboost-0.3-1/xgboost/man/xgb.dump.Rd | 19 +
xgboost-0.3-1/xgboost/man/xgb.load.Rd | 14 -
xgboost-0.3-1/xgboost/man/xgb.save.Rd | 14 -
xgboost-0.3-1/xgboost/man/xgb.train.Rd | 29 +-
xgboost-0.3-1/xgboost/man/xgboost.Rd | 14 -
xgboost-0.3-1/xgboost/src/Makevars | 4
xgboost-0.3-1/xgboost/src/Makevars.win | 4
xgboost-0.3-1/xgboost/src/src/gbm/gblinear-inl.hpp | 10
xgboost-0.3-1/xgboost/src/src/gbm/gbm.cpp | 1
xgboost-0.3-1/xgboost/src/src/gbm/gbm.h | 5
xgboost-0.3-1/xgboost/src/src/gbm/gbtree-inl.hpp | 24 +-
xgboost-0.3-1/xgboost/src/src/io/simple_dmatrix-inl.hpp | 26 +-
xgboost-0.3-1/xgboost/src/src/io/simple_fmatrix-inl.hpp | 12 -
xgboost-0.3-1/xgboost/src/src/learner/dmatrix.h | 8
xgboost-0.3-1/xgboost/src/src/learner/evaluation-inl.hpp | 9
xgboost-0.3-1/xgboost/src/src/learner/evaluation.h | 7
xgboost-0.3-1/xgboost/src/src/learner/helper_utils.h | 1
xgboost-0.3-1/xgboost/src/src/learner/learner-inl.hpp | 28 +-
xgboost-0.3-1/xgboost/src/src/learner/objective-inl.hpp | 19 -
xgboost-0.3-1/xgboost/src/src/learner/objective.h | 1
xgboost-0.3-1/xgboost/src/src/tree/model.h | 3
xgboost-0.3-1/xgboost/src/src/tree/param.h | 17 -
xgboost-0.3-1/xgboost/src/src/tree/updater.cpp | 1
xgboost-0.3-1/xgboost/src/src/tree/updater_colmaker-inl.hpp | 25 +-
xgboost-0.3-1/xgboost/src/src/tree/updater_prune-inl.hpp | 1
xgboost-0.3-1/xgboost/src/src/tree/updater_refresh-inl.hpp | 6
xgboost-0.3-1/xgboost/src/src/utils/fmap.h | 9
xgboost-0.3-1/xgboost/src/src/utils/io.h | 13 -
xgboost-0.3-1/xgboost/src/src/utils/omp.h | 2
xgboost-0.3-1/xgboost/src/src/utils/random.h | 4
xgboost-0.3-1/xgboost/src/src/utils/utils.h | 61 ++++-
xgboost-0.3-1/xgboost/src/src/xgboost_main.cpp | 6
xgboost-0.3-1/xgboost/src/wrapper/xgboost_wrapper.cpp | 50 +++-
xgboost-0.3-1/xgboost/src/wrapper/xgboost_wrapper.h | 20 +
xgboost-0.3-1/xgboost/src/xgboost_R.cpp | 86 +++----
xgboost-0.3-1/xgboost/src/xgboost_R.h | 8
xgboost-0.3-1/xgboost/src/xgboost_assert.c |only
xgboost-0.3-1/xgboost/vignettes/xgboost.Rnw | 73 +++---
xgboost-0.3-1/xgboost/vignettes/xgboost.bib | 10
68 files changed, 835 insertions(+), 459 deletions(-)
Title: Graphical user interface for data mining in R
Diff between rattle versions 3.1.0 dated 2014-07-18 and 3.3.0 dated 2014-09-07
Description: Rattle (the R Analytic Tool To Learn Easily) provides a
Gnome (RGtk2) based interface to R functionality for data mining.
The aim is to provide a simple and intuitive interface
that allows a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. All of this with knowing little
about R. All R commands are logged and commented through the log tab. Thus they
are available to the user as a script file or as an aide for the user to
learn R or to copy-and-paste directly into R itself.
Rattle also exports a number of utility
functions and the graphical user interface, invoked as rattle(), does
not need to be run to deploy these.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (Author of original print.summary.nnet)
Maintainer: Graham Williams
rattle-3.1.0/rattle/R/audit.R |only
rattle-3.1.0/rattle/R/tooltips.R |only
rattle-3.1.0/rattle/inst/ChangeLog |only
rattle-3.3.0/rattle/DESCRIPTION | 12
rattle-3.3.0/rattle/MD5 | 72 ++-
rattle-3.3.0/rattle/R/acquireAuditData.R |only
rattle-3.3.0/rattle/R/asRules.rpart.R |only
rattle-3.3.0/rattle/R/associate.R | 16
rattle-3.3.0/rattle/R/binning.R |only
rattle-3.3.0/rattle/R/data.R | 150 +++----
rattle-3.3.0/rattle/R/evaluate.R | 247 ++----------
rattle-3.3.0/rattle/R/ewkm.R | 4
rattle-3.3.0/rattle/R/execute.R | 6
rattle-3.3.0/rattle/R/executeHistPlot2.R |only
rattle-3.3.0/rattle/R/executeLogTab.R |only
rattle-3.3.0/rattle/R/explore.R | 118 +-----
rattle-3.3.0/rattle/R/export.R | 18
rattle-3.3.0/rattle/R/fancyRpartPlot.R |only
rattle-3.3.0/rattle/R/hclust.R | 6
rattle-3.3.0/rattle/R/kmeans.R | 6
rattle-3.3.0/rattle/R/loadLibs.R |only
rattle-3.3.0/rattle/R/loadTooltips.R |only
rattle-3.3.0/rattle/R/log.R | 16
rattle-3.3.0/rattle/R/model.R | 18
rattle-3.3.0/rattle/R/nnet.R | 4
rattle-3.3.0/rattle/R/normVarNames.R | 24 -
rattle-3.3.0/rattle/R/projects.R | 30 -
rattle-3.3.0/rattle/R/psfchart.R |only
rattle-3.3.0/rattle/R/random_forest.R | 20 -
rattle-3.3.0/rattle/R/rattle.R | 501 ++++++--------------------
rattle-3.3.0/rattle/R/rattleInfo.R |only
rattle-3.3.0/rattle/R/report.R | 4
rattle-3.3.0/rattle/R/riskchart.R | 58 +--
rattle-3.3.0/rattle/R/rpart.R | 179 ---------
rattle-3.3.0/rattle/R/survival.R | 4
rattle-3.3.0/rattle/R/textview.R | 22 -
rattle-3.3.0/rattle/R/transform.R | 122 ------
rattle-3.3.0/rattle/R/unloadLibs.R |only
rattle-3.3.0/rattle/R/zzz.R | 6
rattle-3.3.0/rattle/data/weatherAUS.RData |binary
rattle-3.3.0/rattle/inst/NEWS |only
rattle-3.3.0/rattle/inst/doc/rattle.pdf |binary
rattle-3.3.0/rattle/inst/etc/rattle.ui.140722 |only
rattle-3.3.0/rattle/man/binning.Rd | 2
rattle-3.3.0/rattle/man/fancyRpartPlot.Rd | 35 +
45 files changed, 500 insertions(+), 1200 deletions(-)
Title: R package for somoclu
Diff between Rsomoclu versions 1.4 dated 2014-09-06 and 1.4.1 dated 2014-09-07
Description: Somoclu is a cluster-oriented implementation of self-organizing maps. It relies on MPI for distributing the workload, and it can be accelerated by CUDA on a GPU cluster. A sparse kernel is also included, which is useful for training maps on vector spaces generated in text mining processes.
Author: Peter Wittek [aut], Shichao Gao [cre]
Maintainer: Shichao Gao
DESCRIPTION | 6 +++---
MD5 | 8 ++++----
src/denseCpuKernels.cpp | 19 ++++++++-----------
src/sparseCpuKernels.cpp | 17 +++++++----------
src/trainOneEpoch.cpp | 7 +++----
5 files changed, 25 insertions(+), 32 deletions(-)
Title: Random Effects Latent Class Analysis
Diff between randomLCA versions 0.8-7 dated 2013-12-14 and 0.9-0 dated 2014-09-07
Description: Fits random effects latent class models, as well as standard latent class models.
Author: Ken Beath
Maintainer: Ken Beath
randomLCA-0.8-7/randomLCA/inst/doc/randomLCA-example.R |only
randomLCA-0.8-7/randomLCA/vignettes/dentistry.lca2.outcomes.boot.RData |only
randomLCA-0.8-7/randomLCA/vignettes/dentistry.lca2random.outcomes.boot.RData |only
randomLCA-0.9-0/randomLCA/DESCRIPTION | 12
randomLCA-0.9-0/randomLCA/MD5 | 83 -
randomLCA-0.9-0/randomLCA/NAMESPACE | 26
randomLCA-0.9-0/randomLCA/R/calc.cond.prob.R | 60
randomLCA-0.9-0/randomLCA/R/calc.cond2.prob.R | 80 -
randomLCA-0.9-0/randomLCA/R/calc.marg.prob.R | 125 -
randomLCA-0.9-0/randomLCA/R/class.probs.randomLCA.R |only
randomLCA-0.9-0/randomLCA/R/fit.adapt.random.randomLCA.R | 560 ++++----
randomLCA-0.9-0/randomLCA/R/fit.adapt.random2.randomLCA.R | 662 +++++-----
randomLCA-0.9-0/randomLCA/R/fitted.randomLCA.R | 15
randomLCA-0.9-0/randomLCA/R/norm.gauss.hermite.R | 103 -
randomLCA-0.9-0/randomLCA/R/outcome.probs.randomLCA.R | 250 +--
randomLCA-0.9-0/randomLCA/R/plot.randomLCA.R | 177 +-
randomLCA-0.9-0/randomLCA/R/post.class.probs.randomLCA.R |only
randomLCA-0.9-0/randomLCA/R/randomLCA.R | 265 ++--
randomLCA-0.9-0/randomLCA/R/refit.randomLCA.R |only
randomLCA-0.9-0/randomLCA/R/simulate.randomLCA.R | 11
randomLCA-0.9-0/randomLCA/R/summary.randomLCA.R | 14
randomLCA-0.9-0/randomLCA/build/vignette.rds |binary
randomLCA-0.9-0/randomLCA/inst/NEWS | 22
randomLCA-0.9-0/randomLCA/inst/doc/randomLCA-example.Rnw | 376 -----
randomLCA-0.9-0/randomLCA/inst/doc/randomLCA-example.pdf |binary
randomLCA-0.9-0/randomLCA/man/calc.cond2.prob.Rd | 2
randomLCA-0.9-0/randomLCA/man/class.probs.Rd |only
randomLCA-0.9-0/randomLCA/man/dentistry.Rd | 92 -
randomLCA-0.9-0/randomLCA/man/fitted.Rd | 36
randomLCA-0.9-0/randomLCA/man/genderrole.Rd | 120 -
randomLCA-0.9-0/randomLCA/man/hivtests.Rd | 8
randomLCA-0.9-0/randomLCA/man/myocardial.Rd | 2
randomLCA-0.9-0/randomLCA/man/outcome.probs.Rd | 67 -
randomLCA-0.9-0/randomLCA/man/plot.Rd | 54
randomLCA-0.9-0/randomLCA/man/post.class.probs.Rd |only
randomLCA-0.9-0/randomLCA/man/randomLCA.Rd | 42
randomLCA-0.9-0/randomLCA/man/refit.Rd |only
randomLCA-0.9-0/randomLCA/man/summary.Rd | 1
randomLCA-0.9-0/randomLCA/man/symptoms.Rd | 10
randomLCA-0.9-0/randomLCA/man/uterinecarcinoma.Rd | 92 -
randomLCA-0.9-0/randomLCA/src/bernoulliprobrandom.c | 10
randomLCA-0.9-0/randomLCA/src/bernoulliprobrandom2.c | 23
randomLCA-0.9-0/randomLCA/src/lcemalgorith.c | 2
randomLCA-0.9-0/randomLCA/vignettes/randomLCA-example-010.pdf |only
randomLCA-0.9-0/randomLCA/vignettes/randomLCA-example-014.pdf |only
randomLCA-0.9-0/randomLCA/vignettes/randomLCA-example-015.pdf |only
randomLCA-0.9-0/randomLCA/vignettes/randomLCA-example-022.pdf |only
randomLCA-0.9-0/randomLCA/vignettes/randomLCA-example-026.pdf |only
randomLCA-0.9-0/randomLCA/vignettes/randomLCA-example.Rnw | 376 -----
randomLCA-0.9-0/randomLCA/vignettes/randomLCA-exampleTex.tex |only
50 files changed, 1541 insertions(+), 2237 deletions(-)
Title: Tools to analyse repertory grid data
Diff between OpenRepGrid versions 0.1.8 dated 2013-06-14 and 0.1.9 dated 2014-09-07
Description: Tools to analyse repertory grid data
Author: Mark Heckmann [aut, cre]
Maintainer: Mark Heckmann
OpenRepGrid-0.1.8/OpenRepGrid/README.md |only
OpenRepGrid-0.1.8/OpenRepGrid/man/show.Rd |only
OpenRepGrid-0.1.9/OpenRepGrid/CHANGELOG | 8
OpenRepGrid-0.1.9/OpenRepGrid/DESCRIPTION | 33
OpenRepGrid-0.1.9/OpenRepGrid/MD5 | 370 +++---
OpenRepGrid-0.1.9/OpenRepGrid/NAMESPACE | 52
OpenRepGrid-0.1.9/OpenRepGrid/NEWS | 12
OpenRepGrid-0.1.9/OpenRepGrid/R/bertin.r | 13
OpenRepGrid-0.1.9/OpenRepGrid/R/calc.r | 38
OpenRepGrid-0.1.9/OpenRepGrid/R/data-openrepgrid.r | 3
OpenRepGrid-0.1.9/OpenRepGrid/R/export.r | 2
OpenRepGrid-0.1.9/OpenRepGrid/R/gmMain.r | 4
OpenRepGrid-0.1.9/OpenRepGrid/R/import.r | 44
OpenRepGrid-0.1.9/OpenRepGrid/R/measures.r | 6
OpenRepGrid-0.1.9/OpenRepGrid/R/onair.r |only
OpenRepGrid-0.1.9/OpenRepGrid/R/openrepgrid.r | 3
OpenRepGrid-0.1.9/OpenRepGrid/R/repgrid-basicops.r | 32
OpenRepGrid-0.1.9/OpenRepGrid/R/repgrid-constructs.r | 7
OpenRepGrid-0.1.9/OpenRepGrid/R/repgrid-output.r | 21
OpenRepGrid-0.1.9/OpenRepGrid/R/repgrid-plots.r | 23
OpenRepGrid-0.1.9/OpenRepGrid/R/rgl-3d.r | 13
OpenRepGrid-0.1.9/OpenRepGrid/R/utils.r | 5
OpenRepGrid-0.1.9/OpenRepGrid/man/OpenRepGrid-overview.Rd | 417 +++----
OpenRepGrid-0.1.9/OpenRepGrid/man/OpenRepGrid.Rd | 67 -
OpenRepGrid-0.1.9/OpenRepGrid/man/addConstruct.Rd | 43
OpenRepGrid-0.1.9/OpenRepGrid/man/addElement.Rd | 32
OpenRepGrid-0.1.9/OpenRepGrid/man/addIndexColumnToMatrix.Rd | 7
OpenRepGrid-0.1.9/OpenRepGrid/man/addVarianceExplainedToBiplot2d.Rd | 101 -
OpenRepGrid-0.1.9/OpenRepGrid/man/alignByIdeal.Rd | 83 -
OpenRepGrid-0.1.9/OpenRepGrid/man/alignByLoadings.Rd | 104 -
OpenRepGrid-0.1.9/OpenRepGrid/man/angleOrderIndexes2d.Rd | 25
OpenRepGrid-0.1.9/OpenRepGrid/man/apply_pb.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/bertin.Rd | 138 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/bertinBase.Rd | 55 -
OpenRepGrid-0.1.9/OpenRepGrid/man/bertinCluster.Rd | 163 +--
OpenRepGrid-0.1.9/OpenRepGrid/man/bind.Rd | 36
OpenRepGrid-0.1.9/OpenRepGrid/man/bindConstructs.Rd | 32
OpenRepGrid-0.1.9/OpenRepGrid/man/biplot2d.Rd | 530 ++++------
OpenRepGrid-0.1.9/OpenRepGrid/man/biplot3d.Rd | 171 +--
OpenRepGrid-0.1.9/OpenRepGrid/man/biplot3dBase2.Rd | 49
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotDraw.Rd | 128 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotEsa2d.Rd | 87 -
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotEsa3d.Rd | 79 -
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotEsaPseudo3d.Rd | 78 -
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotPseudo3d.Rd | 216 +---
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotSimple.Rd | 134 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotSlater2d.Rd | 73 -
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotSlater3d.Rd | 76 -
OpenRepGrid-0.1.9/OpenRepGrid/man/biplotSlaterPseudo3d.Rd | 70 -
OpenRepGrid-0.1.9/OpenRepGrid/man/calcAngles.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/calcBiplotCoords.Rd | 39
OpenRepGrid-0.1.9/OpenRepGrid/man/calcCoordsBorders.Rd | 33
OpenRepGrid-0.1.9/OpenRepGrid/man/cascade.Rd | 17
OpenRepGrid-0.1.9/OpenRepGrid/man/center.Rd | 34
OpenRepGrid-0.1.9/OpenRepGrid/man/clearRatings.Rd | 18
OpenRepGrid-0.1.9/OpenRepGrid/man/cluster.Rd | 124 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/clusterBoot.Rd | 209 +--
OpenRepGrid-0.1.9/OpenRepGrid/man/constructCor.Rd | 40
OpenRepGrid-0.1.9/OpenRepGrid/man/constructD.Rd | 56 -
OpenRepGrid-0.1.9/OpenRepGrid/man/constructPca.Rd | 58 -
OpenRepGrid-0.1.9/OpenRepGrid/man/constructPcaLoadings.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/constructRmsCor.Rd | 49
OpenRepGrid-0.1.9/OpenRepGrid/man/convertImportObjectToRepGridObject.Rd | 12
OpenRepGrid-0.1.9/OpenRepGrid/man/convertScivescoImportObjectToRepGridObject.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/data-bell2010.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/data-bellmcgorry1992.Rd | 25
OpenRepGrid-0.1.9/OpenRepGrid/man/data-boeker.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/data-fbb2003.Rd | 12
OpenRepGrid-0.1.9/OpenRepGrid/man/data-feixas2004.Rd | 29
OpenRepGrid-0.1.9/OpenRepGrid/man/data-leach2001.Rd | 33
OpenRepGrid-0.1.9/OpenRepGrid/man/data-mackay1992.Rd | 14
OpenRepGrid-0.1.9/OpenRepGrid/man/data-raeithel.Rd | 19
OpenRepGrid-0.1.9/OpenRepGrid/man/data-slater1977a.Rd | 8
OpenRepGrid-0.1.9/OpenRepGrid/man/data-slater1977b.Rd | 19
OpenRepGrid-0.1.9/OpenRepGrid/man/decouple.Rd | 9
OpenRepGrid-0.1.9/OpenRepGrid/man/dim.repgrid.Rd | 18
OpenRepGrid-0.1.9/OpenRepGrid/man/distance.Rd | 59 -
OpenRepGrid-0.1.9/OpenRepGrid/man/distanceHartmann.Rd | 152 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/distanceNormalized.Rd | 156 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/distanceSlater.Rd | 117 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/doRectanglesOverlap.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/doubleEntry.Rd | 12
OpenRepGrid-0.1.9/OpenRepGrid/man/elementCor.Rd | 72 -
OpenRepGrid-0.1.9/OpenRepGrid/man/elementRmsCor.Rd | 66 -
OpenRepGrid-0.1.9/OpenRepGrid/man/extract-methods.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/formatMatrix.Rd | 28
OpenRepGrid-0.1.9/OpenRepGrid/man/getConstructNames.Rd | 9
OpenRepGrid-0.1.9/OpenRepGrid/man/getConstructNames2.Rd | 44
OpenRepGrid-0.1.9/OpenRepGrid/man/getElementNames.Rd | 16
OpenRepGrid-0.1.9/OpenRepGrid/man/getElementNames2.Rd | 35
OpenRepGrid-0.1.9/OpenRepGrid/man/getNoOfConstructs.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/getNoOfElements.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/getRatingLayer.Rd | 23
OpenRepGrid-0.1.9/OpenRepGrid/man/getScale.Rd | 16
OpenRepGrid-0.1.9/OpenRepGrid/man/getScaleMidpoint.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/home.Rd | 32
OpenRepGrid-0.1.9/OpenRepGrid/man/importExcel.Rd | 90 -
OpenRepGrid-0.1.9/OpenRepGrid/man/importExcelInternal.Rd | 72 -
OpenRepGrid-0.1.9/OpenRepGrid/man/importGridcor.Rd | 54 -
OpenRepGrid-0.1.9/OpenRepGrid/man/importGridcorInternal.Rd | 25
OpenRepGrid-0.1.9/OpenRepGrid/man/importGridstat.Rd | 99 -
OpenRepGrid-0.1.9/OpenRepGrid/man/importGridstatInternal.Rd | 109 --
OpenRepGrid-0.1.9/OpenRepGrid/man/importGridsuite.Rd | 59 -
OpenRepGrid-0.1.9/OpenRepGrid/man/importGridsuiteInternal.Rd | 43
OpenRepGrid-0.1.9/OpenRepGrid/man/importScivesco.Rd | 89 -
OpenRepGrid-0.1.9/OpenRepGrid/man/importScivescoInternal.Rd | 64 -
OpenRepGrid-0.1.9/OpenRepGrid/man/importTxt.Rd | 127 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/importTxtInternal.Rd | 112 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/indexBias.Rd | 30
OpenRepGrid-0.1.9/OpenRepGrid/man/indexConflict1.Rd | 113 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/indexConflict2.Rd | 114 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/indexConflict3.Rd | 147 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/indexDilemma.Rd | 367 +++---
OpenRepGrid-0.1.9/OpenRepGrid/man/indexIntensity.Rd | 105 -
OpenRepGrid-0.1.9/OpenRepGrid/man/indexPvaff.Rd | 59 -
OpenRepGrid-0.1.9/OpenRepGrid/man/indexVariability.Rd | 31
OpenRepGrid-0.1.9/OpenRepGrid/man/lapply_pb.Rd | 19
OpenRepGrid-0.1.9/OpenRepGrid/man/loadgrid.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/makeEmptyRepgrid.Rd | 9
OpenRepGrid-0.1.9/OpenRepGrid/man/makeRepgrid.Rd | 26
OpenRepGrid-0.1.9/OpenRepGrid/man/map.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/mapCoordinatesToColor.Rd | 26
OpenRepGrid-0.1.9/OpenRepGrid/man/mapCoordinatesToValue.Rd | 22
OpenRepGrid-0.1.9/OpenRepGrid/man/modifyConstruct.Rd | 34
OpenRepGrid-0.1.9/OpenRepGrid/man/modifyElement.Rd | 26
OpenRepGrid-0.1.9/OpenRepGrid/man/move.Rd | 38
OpenRepGrid-0.1.9/OpenRepGrid/man/multigridFileToSinglegridFiles.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/normalize.Rd | 20
OpenRepGrid-0.1.9/OpenRepGrid/man/openrepgridSettings.Rd | 9
OpenRepGrid-0.1.9/OpenRepGrid/man/ops-methods.Rd | 22
OpenRepGrid-0.1.9/OpenRepGrid/man/orderBy.Rd | 12
OpenRepGrid-0.1.9/OpenRepGrid/man/orderByString.Rd | 12
OpenRepGrid-0.1.9/OpenRepGrid/man/permuteConstructs.Rd | 19
OpenRepGrid-0.1.9/OpenRepGrid/man/permuteGrid.Rd | 22
OpenRepGrid-0.1.9/OpenRepGrid/man/prepareBiplotData.Rd | 228 +---
OpenRepGrid-0.1.9/OpenRepGrid/man/print.alignByLoadings.Rd | 24
OpenRepGrid-0.1.9/OpenRepGrid/man/print.constructCor.Rd | 31
OpenRepGrid-0.1.9/OpenRepGrid/man/print.constructD.Rd | 23
OpenRepGrid-0.1.9/OpenRepGrid/man/print.constructPca.Rd | 17
OpenRepGrid-0.1.9/OpenRepGrid/man/print.distance.Rd | 37
OpenRepGrid-0.1.9/OpenRepGrid/man/print.elementCor.Rd | 28
OpenRepGrid-0.1.9/OpenRepGrid/man/print.hdistance.Rd | 50
OpenRepGrid-0.1.9/OpenRepGrid/man/print.indexConflict1.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/print.indexConflict2.Rd | 22
OpenRepGrid-0.1.9/OpenRepGrid/man/print.indexConflict3.Rd | 27
OpenRepGrid-0.1.9/OpenRepGrid/man/print.indexIntensity.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/print.indexPvaff.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/print.rmsCor.Rd | 14
OpenRepGrid-0.1.9/OpenRepGrid/man/print.ssq.Rd | 27
OpenRepGrid-0.1.9/OpenRepGrid/man/print.statsConstructs.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/print.statsElements.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/quasiDistributionDistanceSlater.Rd | 37
OpenRepGrid-0.1.9/OpenRepGrid/man/randomGrid.Rd | 35
OpenRepGrid-0.1.9/OpenRepGrid/man/randomGrids.Rd | 40
OpenRepGrid-0.1.9/OpenRepGrid/man/randomSentence.Rd | 15
OpenRepGrid-0.1.9/OpenRepGrid/man/randomSentences.Rd | 20
OpenRepGrid-0.1.9/OpenRepGrid/man/randomWords.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/recycle.Rd | 29
OpenRepGrid-0.1.9/OpenRepGrid/man/recycle2.Rd | 18
OpenRepGrid-0.1.9/OpenRepGrid/man/reorder2d.Rd | 68 -
OpenRepGrid-0.1.9/OpenRepGrid/man/rglDrawConstructLabels.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/rglDrawConstructPoints.Rd | 19
OpenRepGrid-0.1.9/OpenRepGrid/man/rglDrawStandardAxes.Rd | 28
OpenRepGrid-0.1.9/OpenRepGrid/man/rglDrawStandardEllipses.Rd | 14
OpenRepGrid-0.1.9/OpenRepGrid/man/ring.Rd | 16
OpenRepGrid-0.1.9/OpenRepGrid/man/sapply_pb.Rd | 19
OpenRepGrid-0.1.9/OpenRepGrid/man/saveAsTxt.Rd | 75 -
OpenRepGrid-0.1.9/OpenRepGrid/man/setConstructAttr.Rd | 36
OpenRepGrid-0.1.9/OpenRepGrid/man/setElementAttr.Rd | 30
OpenRepGrid-0.1.9/OpenRepGrid/man/setMeta.Rd | 19
OpenRepGrid-0.1.9/OpenRepGrid/man/setScale.Rd | 23
OpenRepGrid-0.1.9/OpenRepGrid/man/settings.Rd | 35
OpenRepGrid-0.1.9/OpenRepGrid/man/settingsLoad.Rd | 14
OpenRepGrid-0.1.9/OpenRepGrid/man/settingsSave.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/shift.Rd | 20
OpenRepGrid-0.1.9/OpenRepGrid/man/show-repgrid-method.Rd |only
OpenRepGrid-0.1.9/OpenRepGrid/man/showMeta.Rd | 12
OpenRepGrid-0.1.9/OpenRepGrid/man/showScale.Rd | 11
OpenRepGrid-0.1.9/OpenRepGrid/man/slaterStandardization.Rd | 10
OpenRepGrid-0.1.9/OpenRepGrid/man/ssq.Rd | 112 +-
OpenRepGrid-0.1.9/OpenRepGrid/man/stats.Rd | 62 -
OpenRepGrid-0.1.9/OpenRepGrid/man/stepChart.Rd | 20
OpenRepGrid-0.1.9/OpenRepGrid/man/strReverse.Rd | 13
OpenRepGrid-0.1.9/OpenRepGrid/man/subassign.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/swapConstructs.Rd | 17
OpenRepGrid-0.1.9/OpenRepGrid/man/swapElements.Rd | 17
OpenRepGrid-0.1.9/OpenRepGrid/man/swapPoles.Rd | 21
OpenRepGrid-0.1.9/OpenRepGrid/man/trim_val.Rd | 21
188 files changed, 4611 insertions(+), 4810 deletions(-)