Title: Similarity Network Fusion
Diff between SNFtool versions 2.1 dated 2014-03-29 and 2.2 dated 2014-09-08
Description: Similarity Network Fusion takes multiple views of a network and fuses them together to construct an overall status matrix. The input to our algorithm can be feature vectors, pairwise distances, or pairwise similarities. The learned status matrix can then be used for retrieval, clustering, and classification.
Author: Bo Wang, Aziz Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu, Michael Brudno, Benjamin Haibe-Kains, Anna Goldenberg
Maintainer: Bo Wang
DESCRIPTION | 7 ++++---
MD5 | 10 ++++++++--
NAMESPACE | 1 +
R/displayClustersWithHeatmap.R |only
R/getColorsForGroups.R |only
R/rankFeaturesByNMI.R |only
man/displayClustersWithHeatmap.Rd |only
man/getColorsForGroups.Rd |only
man/rankFeaturesByNMI.Rd |only
9 files changed, 13 insertions(+), 5 deletions(-)
Title: MODIS Subsetting Tools
Diff between MODISTools versions 0.93.9 dated 2014-03-26 and 0.94.4 dated 2014-09-08
Description: Provides several functions for downloading, storing and processing
subsets of MODIS Land Processes data as a batch process.
Author: Sean Tuck, Helen Phillips
Maintainer: Sean Tuck
DESCRIPTION | 8 -
MD5 | 30 +++--
R/BatchDownload.R | 49 +++++----
R/FindID.R | 3
R/LandCover.R | 13 +-
R/MODISGrid.R |only
R/MODISSubsets.R | 90 +++++++++++------
R/MODISSummaries.R | 217 ++++++++++++++++++++++++++++++++-----------
R/MODISTimeSeries.R | 51 ++++++----
R/QualityCheck.R | 15 --
R/UpdateSubsets.R | 82 ++++++++++------
inst/doc/UsingMODISTools.pdf |binary
man/MODISGrid.Rd |only
man/MODISSubsets.Rd | 12 +-
man/MODISSummaries.Rd | 22 +++-
man/MODISTimeSeries.Rd | 36 +++++--
man/UpdateSubsets.Rd | 12 +-
17 files changed, 427 insertions(+), 213 deletions(-)
Title: Visualization tools for partially accruing data
Diff between accrued versions 1.1 dated 2014-06-11 and 1.2 dated 2014-09-08
Description: Package for visualizing data quality of partially accruing time series.
Author: Julie Eaton and Ian Painter
Maintainer: Julie Eaton
DESCRIPTION | 8 -
MD5 | 48 ++++-----
NAMESPACE | 1
R/accruedErrors.R | 24 ++--
R/asOf.R |only
R/barcode.R | 55 ++++++----
R/data.accrued.R | 7 -
R/lagHistogram.R | 7 -
R/laggedTSarray.R | 11 +-
R/plot.accrued.R | 211 +++++++++++++++++++++++++++--------------
R/stackedUploadData.R | 2
R/summary.accrued.R | 25 +++-
R/uploadPattern.R | 81 ++++++++++-----
data/accruedDataExample.rda |binary
data/accruedDataILIExample.rda |binary
inst/doc/accrued_vignette.pdf |binary
man/accrued-package.Rd | 10 +
man/accruedErrors.Rd | 4
man/asOf.Rd |only
man/barcode.Rd | 4
man/data.accrued.Rd | 9 -
man/errorQuantileSummary.Rd | 8 -
man/lagHistogram.Rd | 5
man/plot.accrued.Rd | 4
man/stackedUploadData.Rd | 2
man/uploadPattern.Rd | 2
26 files changed, 330 insertions(+), 198 deletions(-)
Title: Test Analysis Modules
Diff between TAM versions 1.0-3 dated 2014-06-27 and 1.0-3.18-1 dated 2014-09-08
Description:
The package includes marginal and joint maximum likelihood
estimation of uni- and multidimensional item response models
(Rasch, 2PL, 3PL, Generalized Partial Credit, Multi Facets,
Structured Latent Class Analysis),
fit statistics, standard error estimation, as
well as plausible value imputation and weighted likelihood
estimation of ability.
Author: Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch
DESCRIPTION | 23 ++--
MD5 | 69 +++++++-------
NAMESPACE | 3
R/tam.fit.R | 187 ++++++++++++--------------------------
R/tam.jml.fit.R |only
R/tam.modelfit.R | 7 -
R/tam_thurstonian_threshold.R | 3
data/data.cqc01.rda |binary
data/data.cqc02.rda |binary
data/data.cqc03.rda |binary
data/data.cqc04.rda |binary
data/data.cqc05.rda |binary
data/data.ex08.rda |binary
data/data.ex10.rda |binary
data/data.ex11.rda |binary
data/data.ex12.rda |binary
data/data.ex14.rda |binary
data/data.ex15.rda |binary
data/data.fims.Aus.Jpn.raw.rda |binary
data/data.fims.Aus.Jpn.scored.rda |binary
data/data.gpcm.rda |binary
data/data.mc.rda |binary
data/data.numeracy.rda |binary
data/data.timssAusTwn.rda |binary
data/data.timssAusTwn.scored.rda |binary
data/sim.facets.rda |binary
data/sim.mfr.rda |binary
data/sim.rasch.missing.rda |binary
data/sim.rasch.pweights.rda |binary
data/sim.rasch.rda |binary
inst/NEWS | 22 ++++
man/TAM-package.Rd | 4
man/tam.fit.Rd | 30 +++++-
man/tam.mml.Rd | 4
man/tam.modelfit.Rd | 7 +
man/tam.threshold.Rd | 8 +
36 files changed, 181 insertions(+), 186 deletions(-)
Title: Tools for HTML
Diff between htmltools versions 0.2.4 dated 2014-05-27 and 0.2.6 dated 2014-09-08
Description: Tools for HTML generation and output
Author: RStudio, Inc.
Maintainer: Joe Cheng
DESCRIPTION | 8 ++---
MD5 | 64 +++++++++++++++++++++---------------------
NAMESPACE | 4 +-
NEWS |only
R/html_dependency.R | 36 +++++++++++++++++++++--
R/html_print.R | 59 ++++++++++++++++++++++++++------------
R/tags.R | 40 +++++++++++++++++++++++++-
inst/tests/test-deps.r | 1
man/HTML.Rd | 2 -
man/as.tags.Rd | 2 -
man/browsable.Rd | 2 -
man/builder.Rd | 2 -
man/copyDependencyToDir.Rd | 2 -
man/findDependencies.Rd | 2 -
man/htmlDependencies.Rd | 2 -
man/htmlDependency.Rd | 18 ++++++++++-
man/htmlEscape.Rd | 2 -
man/htmlPreserve.Rd | 2 -
man/html_print.Rd | 13 +++++++-
man/include.Rd | 2 -
man/knitr_methods.Rd | 2 -
man/makeDependencyRelative.Rd | 2 -
man/print.html.Rd | 2 -
man/renderDependencies.Rd | 2 -
man/renderTags.Rd | 2 -
man/resolveDependencies.Rd | 2 -
man/save_html.Rd |only
man/singleton.Rd | 2 -
man/singleton_tools.Rd | 2 -
man/subtractDependencies.Rd | 2 -
man/tag.Rd | 4 +-
man/urlEncodePath.Rd | 4 +-
man/validateCssUnit.Rd | 2 -
man/withTags.Rd | 2 -
34 files changed, 204 insertions(+), 89 deletions(-)
Title: Rcmdr Evidence Based Medicine Plug-In package
Diff between RcmdrPlugin.EBM versions 1.0-3 dated 2014-01-08 and 1.0-8 dated 2014-09-08
More information about RcmdrPlugin.EBM at CRAN
Description: This package provides an Rcmdr plug-in GUI extension for Evidence Based Medicine medical indicators calculations (Sensitivity, specificity, absolute risk reduction, relative risk, ...).
Author: Daniel-Corneliu Leucuta
Maintainer: Daniel-Corneliu Leucuta
DESCRIPTION | 8 +++---
MD5 | 10 +++----
NAMESPACE | 1
R/CrossTab.R | 70 ++++++++++++++++++++++++++---------------------------
inst/CHANGES | 2 +
inst/etc/menus.txt | 8 +++---
6 files changed, 51 insertions(+), 48 deletions(-)
Permanent link
Title: Astronomy Functions, Tools and Routines
Diff between astro versions 1.1 dated 2013-11-13 and 1.2 dated 2014-09-08
Description: The astro package provides a series of functions, tools and routines in everyday use within astronomy. Broadly speaking, one may group these functions into 7 main areas, namely: cosmology, FITS file manipulation, the Sersic function, plotting, data manipulation, statistics and general convenience functions and scripting tools.
Author: Lee Kelvin
Maintainer: Lee Kelvin
astro-1.1/astro/R/gauss.fit.R |only
astro-1.1/astro/man/gauss.fit.Rd |only
astro-1.2/astro/DESCRIPTION | 10 +-
astro-1.2/astro/MD5 | 81 +++++++++++++------
astro-1.2/astro/NAMESPACE | 1
astro-1.2/astro/R/aaxis.R | 6 -
astro-1.2/astro/R/chicdf.R |only
astro-1.2/astro/R/chipdf.R |only
astro-1.2/astro/R/chipval.R |only
astro-1.2/astro/R/combrad.R |only
astro-1.2/astro/R/concen.R |only
astro-1.2/astro/R/convmu.R |only
astro-1.2/astro/R/convrad.R |only
astro-1.2/astro/R/get.fitskey.R |only
astro-1.2/astro/R/h2re.R |only
astro-1.2/astro/R/igamma.R |only
astro-1.2/astro/R/kron.R |only
astro-1.2/astro/R/kronrad.R |only
astro-1.2/astro/R/label.R | 31 ++++---
astro-1.2/astro/R/p2chi.R |only
astro-1.2/astro/R/petro.R |only
astro-1.2/astro/R/petroindex.R |only
astro-1.2/astro/R/petrorad.R |only
astro-1.2/astro/R/put.fitskey.R |only
astro-1.2/astro/R/re2h.R |only
astro-1.2/astro/R/read.fits.R | 122 ++++++++---------------------
astro-1.2/astro/R/read.fitshdr.R |only
astro-1.2/astro/R/read.fitsim.R |only
astro-1.2/astro/R/read.fitskey.R |only
astro-1.2/astro/R/read.fitstab.R |only
astro-1.2/astro/R/schechter.bin.R |only
astro-1.2/astro/R/schechter.ellipse.R | 15 ++-
astro-1.2/astro/R/schechter.fit.R | 129 +++++++------------------------
astro-1.2/astro/R/sersic.R | 115 ---------------------------
astro-1.2/astro/R/write.fits.R | 55 -------------
astro-1.2/astro/R/write.fitshdr.R |only
astro-1.2/astro/R/write.fitskey.R |only
astro-1.2/astro/R/writeBin64.R |only
astro-1.2/astro/man/aqbeta.Rd | 4
astro-1.2/astro/man/astro.Rd | 70 +++++++++++-----
astro-1.2/astro/man/chicdf.Rd |only
astro-1.2/astro/man/chipdf.Rd |only
astro-1.2/astro/man/chipval.Rd |only
astro-1.2/astro/man/combrad.Rd |only
astro-1.2/astro/man/convrad.Rd | 2
astro-1.2/astro/man/get.fitskey.Rd |only
astro-1.2/astro/man/p2chi.Rd |only
astro-1.2/astro/man/put.fitskey.Rd |only
astro-1.2/astro/man/read.fits.Rd | 3
astro-1.2/astro/man/read.fitshdr.Rd | 5 -
astro-1.2/astro/man/read.fitsim.Rd | 4
astro-1.2/astro/man/read.fitskey.Rd | 6 +
astro-1.2/astro/man/read.fitstab.Rd | 4
astro-1.2/astro/man/schechter.bin.Rd |only
astro-1.2/astro/man/schechter.ellipse.Rd | 19 ++--
astro-1.2/astro/man/schechter.fit.Rd | 21 ++---
astro-1.2/astro/man/sersic.Rd | 2
astro-1.2/astro/man/strip.Rd | 2
astro-1.2/astro/man/write.fits.Rd | 2
astro-1.2/astro/man/writeBin64.Rd |only
60 files changed, 254 insertions(+), 455 deletions(-)
Title: 3D visualization device system (OpenGL)
Diff between rgl versions 0.93.1098 dated 2014-07-02 and 0.94.1131 dated 2014-09-08
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler
Maintainer: Duncan Murdoch
rgl-0.93.1098/rgl/src/ABCLineSet.hpp |only
rgl-0.93.1098/rgl/src/BBoxDeco.hpp |only
rgl-0.93.1098/rgl/src/Background.hpp |only
rgl-0.93.1098/rgl/src/ClipPlane.hpp |only
rgl-0.93.1098/rgl/src/Color.hpp |only
rgl-0.93.1098/rgl/src/Device.hpp |only
rgl-0.93.1098/rgl/src/DeviceManager.hpp |only
rgl-0.93.1098/rgl/src/Disposable.hpp |only
rgl-0.93.1098/rgl/src/Light.hpp |only
rgl-0.93.1098/rgl/src/Material.hpp |only
rgl-0.93.1098/rgl/src/NULLgui.hpp |only
rgl-0.93.1098/rgl/src/PlaneSet.hpp |only
rgl-0.93.1098/rgl/src/PrimitiveSet.hpp |only
rgl-0.93.1098/rgl/src/RenderContext.hpp |only
rgl-0.93.1098/rgl/src/SceneNode.hpp |only
rgl-0.93.1098/rgl/src/Shape.hpp |only
rgl-0.93.1098/rgl/src/SphereMesh.hpp |only
rgl-0.93.1098/rgl/src/SphereSet.hpp |only
rgl-0.93.1098/rgl/src/SpriteSet.hpp |only
rgl-0.93.1098/rgl/src/String.hpp |only
rgl-0.93.1098/rgl/src/Surface.hpp |only
rgl-0.93.1098/rgl/src/TextSet.hpp |only
rgl-0.93.1098/rgl/src/Texture.hpp |only
rgl-0.93.1098/rgl/src/Viewpoint.hpp |only
rgl-0.93.1098/rgl/src/assert.hpp |only
rgl-0.93.1098/rgl/src/config.hpp |only
rgl-0.93.1098/rgl/src/geom.hpp |only
rgl-0.93.1098/rgl/src/glgui.hpp |only
rgl-0.93.1098/rgl/src/gui.hpp |only
rgl-0.93.1098/rgl/src/init.hpp |only
rgl-0.93.1098/rgl/src/lib.hpp |only
rgl-0.93.1098/rgl/src/opengl.hpp |only
rgl-0.93.1098/rgl/src/osx/osxgui.hpp |only
rgl-0.93.1098/rgl/src/win32gui.hpp |only
rgl-0.93.1098/rgl/src/x11gui.hpp |only
rgl-0.94.1131/rgl/DESCRIPTION | 10
rgl-0.94.1131/rgl/MD5 | 289 ++++---
rgl-0.94.1131/rgl/NAMESPACE | 27
rgl-0.94.1131/rgl/R/animate.R | 20
rgl-0.94.1131/rgl/R/callbacks.R | 3
rgl-0.94.1131/rgl/R/cylinder3d.R | 55 -
rgl-0.94.1131/rgl/R/enum.R | 5
rgl-0.94.1131/rgl/R/getscene.R | 168 +++-
rgl-0.94.1131/rgl/R/material.R | 6
rgl-0.94.1131/rgl/R/par3d.R | 28
rgl-0.94.1131/rgl/R/persp3d.R | 2
rgl-0.94.1131/rgl/R/plot3d.R | 4
rgl-0.94.1131/rgl/R/ply.R | 13
rgl-0.94.1131/rgl/R/r3d.rgl.R | 28
rgl-0.94.1131/rgl/R/scene.R | 85 +-
rgl-0.94.1131/rgl/R/subdivision.mesh3d.R | 19
rgl-0.94.1131/rgl/R/subscenes.R |only
rgl-0.94.1131/rgl/R/triangulate.R | 8
rgl-0.94.1131/rgl/R/turn3d.R | 3
rgl-0.94.1131/rgl/R/webGL.R | 549 +++++++++++---
rgl-0.94.1131/rgl/R/zzz.R | 4
rgl-0.94.1131/rgl/configure | 2
rgl-0.94.1131/rgl/configure.ac | 4
rgl-0.94.1131/rgl/demo/flag.R | 52 -
rgl-0.94.1131/rgl/inst/NEWS | 18
rgl-0.94.1131/rgl/inst/WebGL/CanvasMatrix.src.js |only
rgl-0.94.1131/rgl/man/abclines.Rd | 2
rgl-0.94.1131/rgl/man/attributes.Rd | 42 -
rgl-0.94.1131/rgl/man/axes3d.Rd | 4
rgl-0.94.1131/rgl/man/bg.Rd | 4
rgl-0.94.1131/rgl/man/callbacks.Rd | 7
rgl-0.94.1131/rgl/man/cylinder3d.Rd | 18
rgl-0.94.1131/rgl/man/mfrow3d.Rd |only
rgl-0.94.1131/rgl/man/observer3d.Rd |only
rgl-0.94.1131/rgl/man/par3d.Rd | 89 +-
rgl-0.94.1131/rgl/man/par3dinterp.Rd | 10
rgl-0.94.1131/rgl/man/persp3d.Rd | 2
rgl-0.94.1131/rgl/man/planes.Rd | 19
rgl-0.94.1131/rgl/man/play3d.Rd | 186 ++---
rgl-0.94.1131/rgl/man/primitive.Rd | 2
rgl-0.94.1131/rgl/man/r3d.Rd | 42 -
rgl-0.94.1131/rgl/man/rgl-package.Rd | 98 --
rgl-0.94.1131/rgl/man/rgl.Sweave.Rd | 30
rgl-0.94.1131/rgl/man/rgl.open.Rd |only
rgl-0.94.1131/rgl/man/rgl.user2window.Rd | 10
rgl-0.94.1131/rgl/man/scene.Rd | 32
rgl-0.94.1131/rgl/man/spheres.Rd | 2
rgl-0.94.1131/rgl/man/spin3d.Rd | 109 +-
rgl-0.94.1131/rgl/man/subscene3d.Rd |only
rgl-0.94.1131/rgl/man/subsceneInfo.Rd |only
rgl-0.94.1131/rgl/man/texts.Rd | 6
rgl-0.94.1131/rgl/man/viewpoint.Rd | 13
rgl-0.94.1131/rgl/man/writeWebGL.Rd | 30
rgl-0.94.1131/rgl/src/ABCLineSet.cpp | 11
rgl-0.94.1131/rgl/src/ABCLineSet.h |only
rgl-0.94.1131/rgl/src/BBoxDeco.cpp | 8
rgl-0.94.1131/rgl/src/BBoxDeco.h |only
rgl-0.94.1131/rgl/src/Background.cpp | 36
rgl-0.94.1131/rgl/src/Background.h |only
rgl-0.94.1131/rgl/src/ClipPlane.cpp | 4
rgl-0.94.1131/rgl/src/ClipPlane.h |only
rgl-0.94.1131/rgl/src/Color.cpp | 4
rgl-0.94.1131/rgl/src/Color.h |only
rgl-0.94.1131/rgl/src/Device.h |only
rgl-0.94.1131/rgl/src/DeviceManager.h |only
rgl-0.94.1131/rgl/src/Disposable.cpp | 4
rgl-0.94.1131/rgl/src/Disposable.h |only
rgl-0.94.1131/rgl/src/Light.cpp | 2
rgl-0.94.1131/rgl/src/Light.h |only
rgl-0.94.1131/rgl/src/LineSet.cpp | 2
rgl-0.94.1131/rgl/src/LineStripSet.cpp | 2
rgl-0.94.1131/rgl/src/Makevars.in | 4
rgl-0.94.1131/rgl/src/Material.cpp | 6
rgl-0.94.1131/rgl/src/Material.h |only
rgl-0.94.1131/rgl/src/NULLgui.cpp | 20
rgl-0.94.1131/rgl/src/NULLgui.h |only
rgl-0.94.1131/rgl/src/PlaneSet.cpp | 12
rgl-0.94.1131/rgl/src/PlaneSet.h |only
rgl-0.94.1131/rgl/src/PointSet.cpp | 2
rgl-0.94.1131/rgl/src/PrimitiveSet.cpp | 2
rgl-0.94.1131/rgl/src/PrimitiveSet.h |only
rgl-0.94.1131/rgl/src/QuadSet.cpp | 2
rgl-0.94.1131/rgl/src/RenderContext.cpp | 8
rgl-0.94.1131/rgl/src/RenderContext.h |only
rgl-0.94.1131/rgl/src/SceneNode.h |only
rgl-0.94.1131/rgl/src/Shape.cpp | 8
rgl-0.94.1131/rgl/src/Shape.h |only
rgl-0.94.1131/rgl/src/SphereMesh.cpp | 4
rgl-0.94.1131/rgl/src/SphereMesh.h |only
rgl-0.94.1131/rgl/src/SphereSet.cpp | 12
rgl-0.94.1131/rgl/src/SphereSet.h |only
rgl-0.94.1131/rgl/src/SpriteSet.cpp | 6
rgl-0.94.1131/rgl/src/SpriteSet.h |only
rgl-0.94.1131/rgl/src/String.cpp | 2
rgl-0.94.1131/rgl/src/String.h |only
rgl-0.94.1131/rgl/src/Surface.cpp | 4
rgl-0.94.1131/rgl/src/Surface.h |only
rgl-0.94.1131/rgl/src/TextSet.cpp | 5
rgl-0.94.1131/rgl/src/TextSet.h |only
rgl-0.94.1131/rgl/src/Texture.cpp | 6
rgl-0.94.1131/rgl/src/Texture.h |only
rgl-0.94.1131/rgl/src/Viewpoint.cpp | 141 ++-
rgl-0.94.1131/rgl/src/Viewpoint.h |only
rgl-0.94.1131/rgl/src/api.cpp | 854 +++++++++--------------
rgl-0.94.1131/rgl/src/api.h | 66 -
rgl-0.94.1131/rgl/src/assert.cpp | 2
rgl-0.94.1131/rgl/src/assert.h |only
rgl-0.94.1131/rgl/src/callbacks.cpp | 31
rgl-0.94.1131/rgl/src/config.h |only
rgl-0.94.1131/rgl/src/device.cpp | 6
rgl-0.94.1131/rgl/src/devicemanager.cpp | 8
rgl-0.94.1131/rgl/src/ext/ftgl/FTInternals.h | 6
rgl-0.94.1131/rgl/src/fps.cpp | 4
rgl-0.94.1131/rgl/src/geom.cpp | 2
rgl-0.94.1131/rgl/src/geom.h |only
rgl-0.94.1131/rgl/src/glErrors.cpp | 2
rgl-0.94.1131/rgl/src/glgui.cpp | 13
rgl-0.94.1131/rgl/src/glgui.h |only
rgl-0.94.1131/rgl/src/gui.cpp | 6
rgl-0.94.1131/rgl/src/gui.h |only
rgl-0.94.1131/rgl/src/init.cpp | 45 -
rgl-0.94.1131/rgl/src/init.h |only
rgl-0.94.1131/rgl/src/lib.h |only
rgl-0.94.1131/rgl/src/opengl.h |only
rgl-0.94.1131/rgl/src/osx/osxgui.h |only
rgl-0.94.1131/rgl/src/osx/osxgui.mm | 23
rgl-0.94.1131/rgl/src/osx/osxlib.cpp | 10
rgl-0.94.1131/rgl/src/par3d.cpp | 497 +++++++++++--
rgl-0.94.1131/rgl/src/pixmap.cpp | 4
rgl-0.94.1131/rgl/src/pixmap.h | 4
rgl-0.94.1131/rgl/src/platform.cpp | 6
rgl-0.94.1131/rgl/src/platform.h | 2
rgl-0.94.1131/rgl/src/pngpixmap.h | 4
rgl-0.94.1131/rgl/src/pragma.h | 6
rgl-0.94.1131/rgl/src/render.cpp | 2
rgl-0.94.1131/rgl/src/render.h | 2
rgl-0.94.1131/rgl/src/rglmath.cpp | 11
rgl-0.94.1131/rgl/src/rglmath.h | 15
rgl-0.94.1131/rgl/src/rglview.cpp | 304 +++++---
rgl-0.94.1131/rgl/src/rglview.h | 47 -
rgl-0.94.1131/rgl/src/scene.cpp | 764 ++++----------------
rgl-0.94.1131/rgl/src/scene.h | 149 +---
rgl-0.94.1131/rgl/src/subscene.cpp |only
rgl-0.94.1131/rgl/src/subscene.h |only
rgl-0.94.1131/rgl/src/win32gui.cpp | 12
rgl-0.94.1131/rgl/src/win32gui.h |only
rgl-0.94.1131/rgl/src/win32lib.cpp | 12
rgl-0.94.1131/rgl/src/x11gui.cpp | 16
rgl-0.94.1131/rgl/src/x11gui.h |only
rgl-0.94.1131/rgl/src/x11lib.cpp | 10
185 files changed, 2937 insertions(+), 2484 deletions(-)
Title: Interactive Interpretation of Linear Regression Models
Diff between LinRegInteractive versions 0.2-1 dated 2014-08-26 and 0.2-2 dated 2014-09-08
More information about LinRegInteractive at CRAN
Description: Interactive visualization of effects and marginal effects for
linear regression models and of link functions, response functions and
marginal effects for generalized linear regression models with binary
dependent variables. A major feature is the handling of the effects of
categorical covariates: if two or more factors are used as covariates every
combination of the levels of each factor is treated separately. The
interactive approach, the automatic calculation of marginal effects and
far-reaching possibilities to customize the graphical output are
characteristic features as well.
Author: Martin Meermeyer
Maintainer: Martin Meermeyer
LinRegInteractive-0.2-1/LinRegInteractive/demo/vigngraphs.R |only
LinRegInteractive-0.2-1/LinRegInteractive/vignettes/fig-002.png |only
LinRegInteractive-0.2-1/LinRegInteractive/vignettes/fig-003.pdf |only
LinRegInteractive-0.2-2/LinRegInteractive/DESCRIPTION | 8
LinRegInteractive-0.2-2/LinRegInteractive/MD5 | 64
LinRegInteractive-0.2-2/LinRegInteractive/R/LinRegInteractive_functions.R | 16
LinRegInteractive-0.2-2/LinRegInteractive/build/vignette.rds |binary
LinRegInteractive-0.2-2/LinRegInteractive/demo/00Index | 2
LinRegInteractive-0.2-2/LinRegInteractive/demo/VignetteFigures.R |only
LinRegInteractive-0.2-2/LinRegInteractive/inst/doc/LinRegInteractive.R |only
LinRegInteractive-0.2-2/LinRegInteractive/inst/doc/LinRegInteractive.Rnw | 1752 ++++------
LinRegInteractive-0.2-2/LinRegInteractive/inst/doc/LinRegInteractive.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/inst/doc/vignettegraphics.zip |binary
LinRegInteractive-0.2-2/LinRegInteractive/man/LinRegInteractive-package.Rd | 6
LinRegInteractive-0.2-2/LinRegInteractive/man/glm.interactive.Rd | 24
LinRegInteractive-0.2-2/LinRegInteractive/man/lm.interactive.Rd | 28
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/LinRegInteractive.Rnw | 1752 ++++------
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/LinRegInteractive.tex |only
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-age-link-1-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-age-link-2-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-age-marg-1-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-age-marg-2-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-age-resp-1-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-age-resp-2-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-amount-link-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-amount-marg-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-amount-np-link-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-amount-np-marg-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-amount-np-resp-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-amount-resp-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-dur-link-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-dur-marg-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/cd-dur-resp-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/fig-002-1.png |only
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/fig-002-2.pdf |only
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/mr-income-resp-001.pdf |binary
LinRegInteractive-0.2-2/LinRegInteractive/vignettes/vignettegraphics.zip |binary
37 files changed, 1821 insertions(+), 1831 deletions(-)
Permanent link
Title: Conduct the F test for hidden additivity in two-factor
experiments
Diff between hiddenf versions 1.0 dated 2014-06-11 and 1.1 dated 2014-09-08
Description: Compute the maximal F-ratio and Bonferroni-adjusted pvalue for a test of no interaction between group and Factor 2 among all possible assignments of levels of Factor 1 into two groups. Generate ANOVA table and interaction plot corresponding to this maximal configuration.
Author: Jason A. Osborne and Christopher T. Franck
Maintainer: Jason A. Osborne
hiddenf-1.0/hiddenf/R/maketall.R |only
hiddenf-1.1/hiddenf/DESCRIPTION | 13 +++++++------
hiddenf-1.1/hiddenf/MD5 | 29 ++++++++++++++++-------------
hiddenf-1.1/hiddenf/NAMESPACE | 2 +-
hiddenf-1.1/hiddenf/R/anova.hiddenf.R | 3 +--
hiddenf-1.1/hiddenf/R/hiddenf.R | 3 ---
hiddenf-1.1/hiddenf/R/makemtx.fcn.R |only
hiddenf-1.1/hiddenf/R/maketall.fcn.R |only
hiddenf-1.1/hiddenf/R/plot.hiddenf.R |only
hiddenf-1.1/hiddenf/R/print.hiddenf.R | 3 +++
hiddenf-1.1/hiddenf/R/rconfig.fcn.R | 1 -
hiddenf-1.1/hiddenf/R/summary.hiddenf.R | 7 ++++---
hiddenf-1.1/hiddenf/data/Boik.mtx.rda |binary
hiddenf-1.1/hiddenf/man/anova.hiddenf.Rd | 2 +-
hiddenf-1.1/hiddenf/man/hiddenf.Rd | 2 +-
hiddenf-1.1/hiddenf/man/plot.hiddenf.Rd |only
hiddenf-1.1/hiddenf/man/print.hiddenf.Rd | 2 +-
hiddenf-1.1/hiddenf/man/summary.hiddenf.Rd | 2 +-
18 files changed, 36 insertions(+), 33 deletions(-)
Title: Analysis of variance and other important complementary analyzes
Diff between easyanova versions 3.0 dated 2013-09-25 and 4.0 dated 2014-09-08
Description: Perform analysis of variance and other important complementary analyzes. The functions are easy to use. Performs analysis in various designs, with balanced and unbalanced data.
Author: Emmanuel Arnhold
Maintainer: Emmanuel Arnhold
DESCRIPTION | 11 +++---
MD5 | 9 +++--
NAMESPACE | 2 +
R/ea2.R | 77 +++++++++++++++++++++++------------------------
inst |only
man/easyanova-package.Rd | 4 +-
6 files changed, 53 insertions(+), 50 deletions(-)
Title: A Toolkit for Recursive Partytioning
Diff between partykit versions 0.8-0 dated 2014-03-27 and 0.8-1 dated 2014-09-08
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources (rpart, RWeka, PMML) yielding objects that share
functionality for print/plot/predict methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree) and model-based
recursive partitioning (mob) from the party package are provided based
on the new infrastructure.
Author: Torsten Hothorn [aut, cre],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn
DESCRIPTION | 10 ++--
MD5 | 56 +++++++++++++------------
NAMESPACE | 1
R/as.party.R | 2
R/ctree.R | 32 +++++++-------
R/mob-plot.R | 14 +++---
R/modelparty.R | 34 ++++++---------
R/node.R | 5 +-
R/party.R | 2
R/pmmlTreeModel.R | 60 +++++++++++++--------------
R/print.R | 15 ++++++
build/vignette.rds |binary
demo |only
inst/NEWS | 27 ++++++++++++
inst/doc/constparty.R | 37 +++++++++++++++--
inst/doc/constparty.Rnw | 35 +++++++++++++++-
inst/doc/constparty.pdf |binary
inst/doc/ctree.pdf |binary
inst/doc/mob.R | 4 -
inst/doc/mob.Rnw | 4 -
inst/doc/mob.pdf |binary
inst/doc/partykit.pdf |binary
man/ctree.Rd | 38 +++++++++++++----
man/partynode-methods.Rd | 91 ++++++++++++++++++++----------------------
src/ctreelinstat.c | 47 ++++++++++++++++-----
tests/regtest-party.Rout.save | 2
vignettes/constparty.Rnw | 35 +++++++++++++++-
vignettes/mob.Rnw | 4 -
vignettes/party.bib | 64 ++++++++++++++---------------
29 files changed, 399 insertions(+), 220 deletions(-)
Title: Additional binary operators for the R language
Diff between operators versions 0.1-6 dated 2010-04-11 and 0.1-7 dated 2014-09-08
Description: A set of binary operators for common tasks such as regex
manipulation.
Author: Romain Francois
Maintainer: Romain Francois
operators-0.1-6/operators/R/000.R |only
operators-0.1-6/operators/inst/unit |only
operators-0.1-6/operators/tests/doRUnit.R |only
operators-0.1-7/operators/DESCRIPTION | 18 ++++++++++--------
operators-0.1-7/operators/LICENSE |only
operators-0.1-7/operators/MD5 |only
operators-0.1-7/operators/R/patternMatching.R | 2 +-
operators-0.1-7/operators/R/patternRemoving.R | 2 +-
operators-0.1-7/operators/R/plusEqual.R | 2 +-
operators-0.1-7/operators/R/withOption.R | 8 ++++----
operators-0.1-7/operators/README.md |only
operators-0.1-7/operators/man/operators-package.Rd | 9 ---------
operators-0.1-7/operators/tests/testthat |only
operators-0.1-7/operators/tests/testthat.R |only
14 files changed, 17 insertions(+), 24 deletions(-)
Title: R Client for the MTurk Requester API
Diff between MTurkR versions 0.4 dated 2014-01-08 and 0.5.1 dated 2014-09-08
Description: Provides R access to the Amazon Mechanical Turk (MTurk) Requester API.
Author: Thomas J. Leeper [aut, cre],
Solomon Messing [ctb],
Sean Murphy [ctb]
Maintainer: Thomas J. Leeper
MTurkR-0.4/MTurkR/R/AnswerKeyToDataFrame.R |only
MTurkR-0.4/MTurkR/R/AssignmentsToDataFrame.R |only
MTurkR-0.4/MTurkR/R/BonusPaymentsToDataFrame.R |only
MTurkR-0.4/MTurkR/R/ExternalQuestionToDataFrame.R |only
MTurkR-0.4/MTurkR/R/HITsToDataFrame.R |only
MTurkR-0.4/MTurkR/R/HTMLQuestionToDataFrame.R |only
MTurkR-0.4/MTurkR/R/ParseErrorCodes.R |only
MTurkR-0.4/MTurkR/R/QualificationRequestsToDataFrame.R |only
MTurkR-0.4/MTurkR/R/QualificationRequirementsToDataFrame.R |only
MTurkR-0.4/MTurkR/R/QualificationTypesToDataFrame.R |only
MTurkR-0.4/MTurkR/R/QualificationsToDataFrame.R |only
MTurkR-0.4/MTurkR/R/QuestionFormAnswersToDataFrame.R |only
MTurkR-0.4/MTurkR/R/QuestionFormToDataFrame.R |only
MTurkR-0.4/MTurkR/R/ReviewResultsToDataFrame.R |only
MTurkR-0.4/MTurkR/R/WorkerBlockToDataFrame.R |only
MTurkR-0.4/MTurkR/R/genericmturkr.R |only
MTurkR-0.4/MTurkR/man/ParseErrorCodes.Rd |only
MTurkR-0.4/MTurkR/man/authenticate.Rd |only
MTurkR-0.4/MTurkR/man/genericmturkr.Rd |only
MTurkR-0.4/MTurkR/man/mturkhelp.Rd |only
MTurkR-0.5.1/MTurkR/DESCRIPTION | 27
MTurkR-0.5.1/MTurkR/MD5 | 261
MTurkR-0.5.1/MTurkR/NAMESPACE | 222
MTurkR-0.5.1/MTurkR/NEWS | 45
MTurkR-0.5.1/MTurkR/R/AccountBalance.R | 49
MTurkR-0.5.1/MTurkR/R/ApproveAllAssignments.R | 42
MTurkR-0.5.1/MTurkR/R/ApproveAssignment.R | 52
MTurkR-0.5.1/MTurkR/R/AssignQualification.R | 97
MTurkR-0.5.1/MTurkR/R/BlockWorker.R | 53
MTurkR-0.5.1/MTurkR/R/ChangeHITType.R | 76
MTurkR-0.5.1/MTurkR/R/ContactWorker.R | 163
MTurkR-0.5.1/MTurkR/R/CreateHIT.R | 141
MTurkR-0.5.1/MTurkR/R/CreateQualificationType.R | 103
MTurkR-0.5.1/MTurkR/R/DisableHIT.R | 68
MTurkR-0.5.1/MTurkR/R/DisposeHIT.R | 53
MTurkR-0.5.1/MTurkR/R/DisposeQualificationType.R | 58
MTurkR-0.5.1/MTurkR/R/ExpireHIT.R | 51
MTurkR-0.5.1/MTurkR/R/ExtendHIT.R | 68
MTurkR-0.5.1/MTurkR/R/GenerateAnswerKey.R | 56
MTurkR-0.5.1/MTurkR/R/GenerateExternalQuestion.R | 6
MTurkR-0.5.1/MTurkR/R/GenerateHITLayoutParameter.R | 2
MTurkR-0.5.1/MTurkR/R/GenerateHITsFromTemplate.R | 1
MTurkR-0.5.1/MTurkR/R/GenerateHTMLQuestion.R | 21
MTurkR-0.5.1/MTurkR/R/GenerateNotification.R | 6
MTurkR-0.5.1/MTurkR/R/GenerateQualificationRequirement.R | 133
MTurkR-0.5.1/MTurkR/R/GenerateReviewPolicy.R | 6
MTurkR-0.5.1/MTurkR/R/GetAssignment.R | 124
MTurkR-0.5.1/MTurkR/R/GetBlockedWorkers.R | 55
MTurkR-0.5.1/MTurkR/R/GetBonuses.R | 161
MTurkR-0.5.1/MTurkR/R/GetFileUpload.R | 74
MTurkR-0.5.1/MTurkR/R/GetHIT.R | 71
MTurkR-0.5.1/MTurkR/R/GetHITsForQualificationType.R | 91
MTurkR-0.5.1/MTurkR/R/GetQualificationRequests.R | 86
MTurkR-0.5.1/MTurkR/R/GetQualificationScore.R | 77
MTurkR-0.5.1/MTurkR/R/GetQualificationType.R | 73
MTurkR-0.5.1/MTurkR/R/GetQualifications.R | 70
MTurkR-0.5.1/MTurkR/R/GetReviewResultsForHIT.R | 77
MTurkR-0.5.1/MTurkR/R/GetReviewableHITs.R | 40
MTurkR-0.5.1/MTurkR/R/GetStatistic.R | 98
MTurkR-0.5.1/MTurkR/R/GetWorkerStatistic.R | 99
MTurkR-0.5.1/MTurkR/R/GrantBonus.R | 58
MTurkR-0.5.1/MTurkR/R/GrantQualification.R | 56
MTurkR-0.5.1/MTurkR/R/HITStatus.R | 39
MTurkR-0.5.1/MTurkR/R/ListStatistics.R | 2
MTurkR-0.5.1/MTurkR/R/OpenDownloadPage.R | 2
MTurkR-0.5.1/MTurkR/R/RegisterHITType.R | 70
MTurkR-0.5.1/MTurkR/R/RejectAssignment.R | 62
MTurkR-0.5.1/MTurkR/R/RejectQualification.R | 62
MTurkR-0.5.1/MTurkR/R/RequesterReport.R | 23
MTurkR-0.5.1/MTurkR/R/RevokeQualification.R | 53
MTurkR-0.5.1/MTurkR/R/SearchHITs.R | 56
MTurkR-0.5.1/MTurkR/R/SearchQualificationTypes.R | 74
MTurkR-0.5.1/MTurkR/R/SendTestEventNotification.R | 53
MTurkR-0.5.1/MTurkR/R/SetHITAsReviewing.R | 71
MTurkR-0.5.1/MTurkR/R/SetHITTypeNotification.R | 72
MTurkR-0.5.1/MTurkR/R/SufficientFunds.R | 54
MTurkR-0.5.1/MTurkR/R/UnblockWorker.R | 60
MTurkR-0.5.1/MTurkR/R/UpdateQualificationScore.R | 72
MTurkR-0.5.1/MTurkR/R/UpdateQualificationType.R | 117
MTurkR-0.5.1/MTurkR/R/ViewAvailableHITs.R | 2
MTurkR-0.5.1/MTurkR/R/WorkerReport.R | 12
MTurkR-0.5.1/MTurkR/R/asdataframe.R |only
MTurkR-0.5.1/MTurkR/R/credentials.R | 14
MTurkR-0.5.1/MTurkR/R/hitsfromtemplate.R | 1
MTurkR-0.5.1/MTurkR/R/mturkhelp.R | 58
MTurkR-0.5.1/MTurkR/R/mturkr.wizard.R | 7356 ++++++------
MTurkR-0.5.1/MTurkR/R/onLoad.r | 6
MTurkR-0.5.1/MTurkR/R/readlogfile.R | 6
MTurkR-0.5.1/MTurkR/R/request.R | 226
MTurkR-0.5.1/MTurkR/R/seconds.R | 8
MTurkR-0.5.1/MTurkR/R/wizard.simple.R | 184
MTurkR-0.5.1/MTurkR/README.md | 50
MTurkR-0.5.1/MTurkR/man/AccountBalance.Rd | 28
MTurkR-0.5.1/MTurkR/man/ApproveAssignment.Rd | 23
MTurkR-0.5.1/MTurkR/man/AssignQualification.Rd | 14
MTurkR-0.5.1/MTurkR/man/BlockWorker.Rd | 30
MTurkR-0.5.1/MTurkR/man/ChangeHITType.Rd | 14
MTurkR-0.5.1/MTurkR/man/ContactWorker.Rd | 18
MTurkR-0.5.1/MTurkR/man/CreateHIT.Rd | 15
MTurkR-0.5.1/MTurkR/man/CreateQualificationType.Rd | 18
MTurkR-0.5.1/MTurkR/man/DisableHIT.Rd | 16
MTurkR-0.5.1/MTurkR/man/DisposeHIT.Rd | 16
MTurkR-0.5.1/MTurkR/man/DisposeQualificationType.Rd | 15
MTurkR-0.5.1/MTurkR/man/ExpireHIT.Rd | 13
MTurkR-0.5.1/MTurkR/man/ExtendHIT.Rd | 17
MTurkR-0.5.1/MTurkR/man/GenerateAnswerKey.Rd | 3
MTurkR-0.5.1/MTurkR/man/GenerateExternalQuestion.Rd | 9
MTurkR-0.5.1/MTurkR/man/GenerateNotification.Rd | 8
MTurkR-0.5.1/MTurkR/man/GenerateQualificationRequirement.Rd | 35
MTurkR-0.5.1/MTurkR/man/GetAssignment.Rd | 17
MTurkR-0.5.1/MTurkR/man/GetBonuses.Rd | 19
MTurkR-0.5.1/MTurkR/man/GetFileUpload.Rd | 15
MTurkR-0.5.1/MTurkR/man/GetHIT.Rd | 23
MTurkR-0.5.1/MTurkR/man/GetHITsForQualificationType.Rd | 14
MTurkR-0.5.1/MTurkR/man/GetQualificationRequests.Rd | 12
MTurkR-0.5.1/MTurkR/man/GetQualificationScore.Rd | 19
MTurkR-0.5.1/MTurkR/man/GetQualificationType.Rd | 16
MTurkR-0.5.1/MTurkR/man/GetQualifications.Rd | 18
MTurkR-0.5.1/MTurkR/man/GetReviewResultsForHIT.Rd | 18
MTurkR-0.5.1/MTurkR/man/GetReviewableHITs.Rd | 18
MTurkR-0.5.1/MTurkR/man/GetStatistic.Rd | 36
MTurkR-0.5.1/MTurkR/man/GrantBonus.Rd | 16
MTurkR-0.5.1/MTurkR/man/GrantQualification.Rd | 15
MTurkR-0.5.1/MTurkR/man/MTurkR-package.Rd | 13
MTurkR-0.5.1/MTurkR/man/MTurkR.Wizard.Rd | 4
MTurkR-0.5.1/MTurkR/man/Miscellaneous.Rd | 4
MTurkR-0.5.1/MTurkR/man/RegisterHITType.Rd | 14
MTurkR-0.5.1/MTurkR/man/RejectAssignment.Rd | 16
MTurkR-0.5.1/MTurkR/man/RejectQualification.Rd | 14
MTurkR-0.5.1/MTurkR/man/RevokeQualification.Rd | 14
MTurkR-0.5.1/MTurkR/man/SearchHITs.Rd | 20
MTurkR-0.5.1/MTurkR/man/SearchQualificationTypes.Rd | 18
MTurkR-0.5.1/MTurkR/man/SendTestEventNotification.Rd | 26
MTurkR-0.5.1/MTurkR/man/SetHITAsReviewing.Rd | 16
MTurkR-0.5.1/MTurkR/man/SetHITTypeNotification.Rd | 16
MTurkR-0.5.1/MTurkR/man/UpdateQualificationScore.Rd | 14
MTurkR-0.5.1/MTurkR/man/UpdateQualificationType.Rd | 20
MTurkR-0.5.1/MTurkR/man/XMLToDataFrame.Rd | 79
MTurkR-0.5.1/MTurkR/man/authenticate-internal.Rd |only
MTurkR-0.5.1/MTurkR/man/credentials.Rd | 11
MTurkR-0.5.1/MTurkR/man/mturkhelp-internal.Rd |only
MTurkR-0.5.1/MTurkR/man/readlogfile.Rd | 2
MTurkR-0.5.1/MTurkR/man/request.Rd | 37
143 files changed, 6111 insertions(+), 6810 deletions(-)
Title: R package to compute the FastRCS outlyingness index.
Diff between FastRCS versions 0.0.3 dated 2014-04-24 and 0.0.4 dated 2014-09-08
Description: The FastRCS outlyingness index is an algorithm for finding outliers for the linear regression model.
Author: Kaveh Vakili [aut, cre]
Maintainer: Kaveh Vakili
DESCRIPTION | 11 ++++----
MD5 | 12 ++++-----
R/FastRCS.R | 40 +++++++++++++++++++++++++------
man/FastRCS-package.Rd | 2 -
man/FastRCS.Rd | 47 ++++++++++++++++++++++++++++++-------
src/FastRCS.cpp | 62 ++++++++++++++++++++++++++++++++++++++++++-------
src/Makevars | 11 ++------
7 files changed, 140 insertions(+), 45 deletions(-)
Title: R package to compute the FastPCS outlyingness index.
Diff between FastPCS versions 0.0.9 dated 2014-04-24 and 0.1.0 dated 2014-09-08
Description: The FastPCS outlyingness index is an algorithm for finding outliers for the multivariate elliptical model.
Author: Kaveh Vakili [aut, cre]
Maintainer: Kaveh Vakili
DESCRIPTION | 13 +++---
MD5 | 12 ++---
R/FastPCS.R | 43 ++++++++++++++++----
man/FastPCS-package.Rd | 2
man/FastPCS.Rd | 24 ++++++++++-
src/FastPCS.cpp | 104 +++++++++++++++++++++++++++++++++++++++----------
src/Makevars | 11 -----
7 files changed, 155 insertions(+), 54 deletions(-)
Title: High-Dimensional Penalized Regression.
Diff between HDPenReg versions 0.89.8 dated 2014-07-28 and 0.89.9 dated 2014-09-08
Description: This package contains algorithms for lasso and fused-lasso
problems. It contains an implementation of the lars algorithm [1], for the
lasso and fusion penalization and EM-based algorithms for (logistic) lasso
and fused-lasso.
Author: Quentin Grimonprez [aut, cre],
Serge Iovleff [ctb]
Maintainer: Quentin Grimonprez
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/HDPenReg-package.R | 4 ++--
inst/doc/vignette.pdf |binary
man/HDPenReg-package.Rd | 4 ++--
src/stkpp/makefile | 26 ++++++++++++++------------
6 files changed, 27 insertions(+), 25 deletions(-)
Title: An R Package for Linear Mixed Model Analyses
Diff between minque versions 1.0 dated 2014-01-16 and 1.1 dated 2014-09-08
Description: This package offers three important components: (1) to construct a use-defined linear mixed model, (2) to employ one of linear mixed model approaches: minimum norm quadratic unbiased estimation (MINQUE) (Rao, 1971) for variance component estimation and random effect prediction; and (3) to employ a jackknife resampling technique to conduct various statistical tests. In addition, this package provides the function for model or data evaluations.This R package offers fast computations for large data sets analyses for various irregular data structures.
Author: Jixiang Wu
Maintainer: Jixiang Wu
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
NAMESPACE | 2 +-
R/remlfunctions.R | 20 +++++++++++++++++---
man/mq-package.Rd | 4 ++--
5 files changed, 29 insertions(+), 15 deletions(-)
Title: INCOMPLETE BLOCK DESIGNS
Diff between ibd versions 1.1 dated 2013-04-04 and 1.2 dated 2014-09-08
Description: This package contains several utility functions related to incomplete block designs. The package contains function to generate efficient incomplete block designs with given numbers of treatments, blocks and block size. The package also contains function to generate an incomplete block design with specified concurrence matrix. There are functions to generate balanced treatment incomplete block designs and incomplete block designs for test versus control treatments comparisons with specified concurrence matrix. Package also allows performing analysis of variance of data and computing least square means of factors from experiments using a connected incomplete block design. Tests of hypothesis of treatment contrasts in incomplete block design set up is supported.
Author: B N Mandal
Maintainer: B N Mandal
ibd-1.1/ibd/man/C.Rd |only
ibd-1.1/ibd/man/NNPmat.Rd |only
ibd-1.2/ibd/DESCRIPTION | 26 --
ibd-1.2/ibd/MD5 | 52 +++-
ibd-1.2/ibd/NAMESPACE | 3
ibd-1.2/ibd/R/ibd.R | 359 ++++++++++-----------------------
ibd-1.2/ibd/data |only
ibd-1.2/ibd/man/A_eff.NNP.Rd |only
ibd-1.2/ibd/man/A_eff.Rd | 12 -
ibd-1.2/ibd/man/A_eff_tc.Rd | 9
ibd-1.2/ibd/man/Cmatrix.Rd |only
ibd-1.2/ibd/man/D_eff.Rd | 13 -
ibd-1.2/ibd/man/LIP.Rd |only
ibd-1.2/ibd/man/NLIP.Rd |only
ibd-1.2/ibd/man/N_to_Design.Rd | 14 -
ibd-1.2/ibd/man/aov.ibd.Rd | 66 ++++--
ibd-1.2/ibd/man/bibd.Rd |only
ibd-1.2/ibd/man/btib.Rd | 17 +
ibd-1.2/ibd/man/btib1.Rd |only
ibd-1.2/ibd/man/ccmat.Rd |only
ibd-1.2/ibd/man/ccmat_LP.Rd |only
ibd-1.2/ibd/man/check.orthogonality.Rd |only
ibd-1.2/ibd/man/check.validity.NNP.Rd |only
ibd-1.2/ibd/man/design_to_N.Rd | 15 -
ibd-1.2/ibd/man/do.exist.NBIB.Rd |only
ibd-1.2/ibd/man/ibd.Rd | 22 +-
ibd-1.2/ibd/man/ibddata.Rd |only
ibd-1.2/ibd/man/ibdgen.Rd |only
ibd-1.2/ibd/man/ibdtvc.Rd | 24 --
ibd-1.2/ibd/man/interchange.NNP.Rd |only
ibd-1.2/ibd/man/is.connected.Rd | 15 -
ibd-1.2/ibd/man/is.equir.Rd | 15 -
ibd-1.2/ibd/man/is.orthogonal.Rd | 15 -
ibd-1.2/ibd/man/is.proper.Rd | 15 -
ibd-1.2/ibd/man/is.vb.Rd | 15 -
ibd-1.2/ibd/man/is.wholenumber.Rd |only
36 files changed, 285 insertions(+), 422 deletions(-)
Title: Bayesian emulation of computer programs
Diff between emulator versions 1.2-13 dated 2013-12-02 and 1.2-15 dated 2014-09-08
Description:
This package allows one to estimate the output of a computer program,
as a function of the input parameters, without actually running it.
The computer program is assumed to be a Gaussian process, whose
parameters are estimated using Bayesian techniques that give a PDF of
expected program output. This PDF is conditional on a ``training set''
of runs, each consisting of a point in parameter space and the model
output at that point. The emphasis is on complex codes that take
weeks or months to run, and that have a large number of undetermined
input parameters; many climate prediction models fall into this
class. The emulator essentially determines Bayesian posterior
estimates of the PDF of the output of a model, conditioned on results
from previous runs and a user-specified prior linear model. A
working example is given in the help page for function `interpolant()',
which should be the first point of reference.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin
emulator-1.2-13/emulator/inst/doc/uncertainty.bib.svn-base |only
emulator-1.2-15/emulator/DESCRIPTION | 12 +--
emulator-1.2-15/emulator/MD5 | 27 +++----
emulator-1.2-15/emulator/NAMESPACE | 2
emulator-1.2-15/emulator/R/aaa_cprod.R | 25 ++++++-
emulator-1.2-15/emulator/R/emulator.R | 10 ++
emulator-1.2-15/emulator/build/vignette.rds |binary
emulator-1.2-15/emulator/data/expert.estimates.rda |binary
emulator-1.2-15/emulator/data/results.table.rda |binary
emulator-1.2-15/emulator/data/toy.rda |binary
emulator-1.2-15/emulator/inst/doc/emulex.pdf |binary
emulator-1.2-15/emulator/man/betahat.fun.Rd | 4 -
emulator-1.2-15/emulator/man/interpolant.Rd | 13 ++-
emulator-1.2-15/emulator/man/latin.hypercube.Rd | 10 ++
emulator-1.2-15/emulator/man/quad.form.Rd | 45 ++++++++++---
15 files changed, 109 insertions(+), 39 deletions(-)
Title: Simple and Canonical Correspondence Analysis.
Diff between anacor versions 1.0-4 dated 2013-12-03 and 1.0-5 dated 2014-09-08
Description: Performs simple and canonical CA (covariates on rows/columns) on a two-way frequency table (with missings) by means of SVD. Different scaling methods (standard, centroid, Benzecri, Goodman) as well as various plots including confidence ellipsoids are provided.
Author: Patrick Mair [aut, cre], Jan De Leeuw [aut]
Maintainer: Patrick Mair
DESCRIPTION | 30 ++++++++++++++++--------------
MD5 | 28 ++++++++++++++--------------
NAMESPACE | 1 +
R/anacor.R | 17 +++++++++++------
R/plot.anacor.R | 15 +++++++++------
data/bitterling.rda |binary
data/galton.rda |binary
data/glass.rda |binary
data/maxwell.rda |binary
data/sleeping.rda |binary
data/spider.rda |binary
data/srole.rda |binary
data/tocher.rda |binary
man/anacor.Rd | 12 +++++++-----
man/plot.anacor.Rd | 2 +-
15 files changed, 59 insertions(+), 46 deletions(-)