Title: Linear regression based on linear structure between covariates
Diff between CorReg versions 0.15.0 dated 2014-07-15 and 0.15.6 dated 2014-09-12
Description: Linear regression based on a recursive structural equation model
(explicit correlations) found by a MCMC algorithm. It permits to face
highly correlated covariates. Variable selection is included (by lasso,
elasticnet, etc.). It also provides some graphical tools for basic
statistics.
Author: Clement THERY [aut, cre],
Christophe BIERNACKI [ctb],
Gaetan LORIDANT [ctb],
Florian WATRIN [ctb],
Quentin GRIMONPREZ [ctb],
Vincent KUBICKI [ctb],
Samuel BLANCK [ctb],
Jeremie KELLNER [ctb]
Maintainer: Clement THERY
DESCRIPTION | 19 ++++---
MD5 | 104 ++++++++++++++++++++--------------------
NAMESPACE | 4 -
NEWS | 2
R/Estep.R | 7 +-
R/Gibbs_miss.R |only
R/Terminator.R | 9 +++
R/bender.R | 8 +--
R/correg.R | 27 ++++++----
R/inkei.R |only
R/matplot_zone.R | 3 -
R/meilleur_lars.R | 2
R/recursive_tree.R | 25 +++++++--
R/rforge.R |only
R/victory_int.R | 11 +++-
man/BicZ.Rd | 6 +-
man/BicZcurve.Rd | 2
man/CVMSE.Rd | 2
man/CorReg-package.Rd | 2
man/Estep.Rd | 10 +--
man/MSEZ.Rd | 2
man/MSE_loc.Rd | 2
man/OLS.Rd | 10 +--
man/ProbaZ.Rd | 8 +--
man/R2Z.Rd | 2
man/Terminator.Rd | 8 +--
man/WhoIs.Rd | 2
man/Winitial.Rd | 16 +++---
man/Y_generator.Rd | 6 +-
man/cleanYtest.Rd | 2
man/cleanZ.Rd | 6 +-
man/cleanZR2.Rd | 2
man/cleancolZ.Rd | 6 +-
man/compare_beta.Rd | 2
man/compare_sign.Rd | 2
man/compare_struct.Rd | 2
man/compare_zero.Rd | 2
man/confint_coef.Rd | 2
man/correg.Rd | 34 ++++++-------
man/density_estimation.Rd | 6 +-
man/fillmiss.Rd | 14 ++---
man/hatB.Rd | 2
man/matplot_zone.Rd | 12 ++--
man/mixture_generator.Rd | 18 +++---
man/readY.Rd | 2
man/readZ.Rd | 2
man/recursive_tree.Rd | 11 +++-
man/rforge.Rd |only
man/searchZ.Rd | 2
man/searchZ_sparse.Rd | 2
man/showdata.Rd | 2
src/rechercheZ.cpp | 13 +++--
src/rechercheZ_rejet.cpp | 9 +--
src/rechercheZ_relax.cpp | 10 ++-
src/rechercheZ_sparse_relax.cpp | 18 +++---
55 files changed, 275 insertions(+), 207 deletions(-)
Title: A Toolkit for Recursive Partytioning
Diff between partykit versions 0.8-1 dated 2014-09-08 and 0.8-2 dated 2014-09-12
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources (rpart, RWeka, PMML) yielding objects that share
functionality for print/plot/predict methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree) and model-based
recursive partitioning (mob) from the party package are provided based
on the new infrastructure.
Author: Torsten Hothorn [aut, cre],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
inst/NEWS | 5 +++++
inst/doc/constparty.pdf |binary
inst/doc/ctree.pdf |binary
inst/doc/mob.pdf |binary
inst/doc/partykit.pdf |binary
src/ctreesplit.c | 2 +-
8 files changed, 17 insertions(+), 12 deletions(-)
Title: Interactive web-maps based on the Leaflet JavaScript library
Diff between leafletR versions 0.2-1 dated 2014-07-09 and 0.3-0 dated 2014-09-12
Description: Display your spatial data on interactive web-maps using the open-source JavaScript library Leaflet. The package provides basic web-mapping functionality to combine vector data and online map tiles from different sources.
Author: Christian Graul, with contributions from Francois Guillem
Maintainer: Christian Graul
leafletR-0.2-1/leafletR/R/baseMap.R |only
leafletR-0.2-1/leafletR/R/leafletInt.R |only
leafletR-0.2-1/leafletR/R/print.leafletr.style.R |only
leafletR-0.2-1/leafletR/inst/files/lynx.dxf |only
leafletR-0.2-1/leafletR/inst/files/park_sk.zip |only
leafletR-0.2-1/leafletR/inst/files/peak_sk.kml |only
leafletR-0.2-1/leafletR/man/leafletInt.Rd |only
leafletR-0.3-0/leafletR/DESCRIPTION | 14 ++--
leafletR-0.3-0/leafletR/MD5 | 63 +++++++++++---------
leafletR-0.3-0/leafletR/NAMESPACE | 18 +++++
leafletR-0.3-0/leafletR/R/addBaseMap.R |only
leafletR-0.3-0/leafletR/R/dfToGeoJSON.R | 14 +++-
leafletR-0.3-0/leafletR/R/fileToGeoJSON.R | 6 -
leafletR-0.3-0/leafletR/R/getFeatureType.R | 38 ++----------
leafletR-0.3-0/leafletR/R/getProperties.R | 15 +---
leafletR-0.3-0/leafletR/R/leaflet.R | 57 ++++++++++++------
leafletR-0.3-0/leafletR/R/print.categorized.style.R |only
leafletR-0.3-0/leafletR/R/print.graduated.style.R |only
leafletR-0.3-0/leafletR/R/print.leaflet.R |only
leafletR-0.3-0/leafletR/R/print.single.style.R |only
leafletR-0.3-0/leafletR/R/spToGeoJSON.R | 13 +---
leafletR-0.3-0/leafletR/R/styleCat.R | 2
leafletR-0.3-0/leafletR/R/styleGrad.R | 2
leafletR-0.3-0/leafletR/R/styleSingle.R | 2
leafletR-0.3-0/leafletR/R/zzz.R | 57 ++++++++++++++++++
leafletR-0.3-0/leafletR/inst/NEWS | 21 ++++++
leafletR-0.3-0/leafletR/inst/files/lynx.zip |only
leafletR-0.3-0/leafletR/inst/files/park_sk.geojson |only
leafletR-0.3-0/leafletR/inst/files/peak_sk.kmz |only
leafletR-0.3-0/leafletR/inst/templates |only
leafletR-0.3-0/leafletR/man/addBaseMap.Rd |only
leafletR-0.3-0/leafletR/man/getFeatureType.Rd | 3
leafletR-0.3-0/leafletR/man/leaflet.Rd | 21 +-----
leafletR-0.3-0/leafletR/man/leafletR-package.Rd | 15 +---
leafletR-0.3-0/leafletR/man/styleCat.Rd | 8 --
leafletR-0.3-0/leafletR/man/styleGrad.Rd | 13 ----
leafletR-0.3-0/leafletR/man/styleSingle.Rd | 16 -----
leafletR-0.3-0/leafletR/man/toGeoJSON.Rd | 19 ++----
38 files changed, 234 insertions(+), 183 deletions(-)
Title: High-speed processing of whole-genome VCF-format variation data,
FASTA-format sequence data and several alignments formats.
Diff between WhopGenome versions 0.8.9 dated 2014-08-27 and 0.9.0 dated 2014-09-12
Description: WhopGenome's provides very fast access to whole genome, population scale variation data
from VCF files and sequence data from FASTA-formatted files.
It also reads in alignments from FASTA, Phylip, MAF and other file formats.
Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data
from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Author: Ulrich Wittelsbuerger
Maintainer: Ulrich Wittelsbuerger
WhopGenome-0.8.9/WhopGenome/inst/doc/WhopGenome_Usage.R |only
WhopGenome-0.9.0/WhopGenome/DESCRIPTION | 9 ++--
WhopGenome-0.9.0/WhopGenome/MD5 | 24 ++++++------
WhopGenome-0.9.0/WhopGenome/R/read_simple.R | 1
WhopGenome-0.9.0/WhopGenome/build |only
WhopGenome-0.9.0/WhopGenome/inst/doc/WhopGenome_Usage.pdf |binary
WhopGenome-0.9.0/WhopGenome/src/t_read.cpp | 7 +++
WhopGenome-0.9.0/WhopGenome/src/w_codemat.cpp | 11 -----
WhopGenome-0.9.0/WhopGenome/src/w_common.h | 13 +++++-
WhopGenome-0.9.0/WhopGenome/src/w_snpmat_diplo.cpp | 10 +----
WhopGenome-0.9.0/WhopGenome/src/w_snpmat_int.cpp | 27 +++++++++++---
WhopGenome-0.9.0/WhopGenome/src/w_snpmat_str.cpp | 16 ++++++--
WhopGenome-0.9.0/WhopGenome/src/w_vcf.cpp | 16 ++++----
WhopGenome-0.9.0/WhopGenome/src/w_vcf.h | 12 ++++--
14 files changed, 87 insertions(+), 59 deletions(-)
Title: Forecast verification routines for the SPECS FP7 project
Diff between SpecsVerification versions 0.1-1 dated 2014-05-02 and 0.2-0 dated 2014-09-12
More information about SpecsVerification at CRAN
Description: A collection of new forecast verification routines for the SPECS FP7 project. The emphasis is on comparative verification of ensemble forecasts.
Author: Stefan Siegert [aut, cre]
Maintainer: Stefan Siegert
DESCRIPTION | 9 ++---
MD5 | 47 +++++++++++++++++++-----------
NAMESPACE | 7 ++++
R/BrierScoreDecomposition.R | 64 +++++++++++++++++++++++++++++++++++++++--
R/ClimEns.R |only
R/DressCrpsDiff.R | 5 ++-
R/DressCrpss.R |only
R/DressIgnDiff.R | 5 ++-
R/DressIgnSs.R |only
R/FairBrierDiff.R | 5 ++-
R/FairBrierSs.R |only
R/FairCrpsDiff.R | 5 ++-
R/FairCrpss.R |only
R/FairRpsDiff.R | 5 ++-
R/FairRpss.R |only
R/GaussCrpsDecomposition.R | 53 ++++++++++++++++++++++++++++++++-
R/GaussCrpsDiff.R | 5 ++-
R/GaussCrpss.R |only
R/ReliabilityDiagram.R | 6 +--
man/BrierScoreDecomposition.Rd | 7 +++-
man/ClimEns.Rd |only
man/DressCrpsDiff.Rd | 4 +-
man/DressCrpss.Rd |only
man/DressIgnSs.Rd |only
man/FairRpsDiff.Rd | 4 +-
man/FairRpss.Rd |only
man/FairScoreDiff.Rd | 4 +-
man/FairSkillScore.Rd |only
man/GaussCrpsDecomposition.Rd | 8 +++--
man/GaussCrpsDiff.Rd | 4 +-
man/GaussCrpss.Rd |only
31 files changed, 203 insertions(+), 44 deletions(-)
Permanent link
Title: Sound analysis and synthesis
Diff between seewave versions 1.7.3 dated 2014-01-27 and 1.7.6 dated 2014-09-12
Description: seewave provides functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur
Maintainer: Jerome Sueur
DESCRIPTION | 15
MD5 | 44 -
NEWS | 22
R/seewave.r | 1152 +++++++++++++++++++++++++++--------------
build/vignette.rds |binary
inst/doc/seewave_IO.pdf |binary
inst/doc/seewave_analysis.pdf |binary
inst/doc/seewave_analysis.rnw | 13
man/ACI.Rd | 2
man/acoustat.Rd | 8
man/akamatsu.Rd |only
man/diffcumspec.Rd |only
man/diffspec.Rd | 4
man/ffilter.Rd | 16
man/fund.Rd | 12
man/istft.Rd |only
man/ks.dist.Rd | 15
man/lfs.Rd | 8
man/seewave.internal.Rd | 2
man/seewave.package.Rd | 14
man/simspec.Rd | 2
man/songmeter.Rd |only
man/spectro.Rd | 12
man/synth.Rd | 157 +++--
vignettes/seewave_analysis.rnw | 13
25 files changed, 1002 insertions(+), 509 deletions(-)
Title: Control the number of threads on BLAS for R
Diff between RhpcBLASctl versions 0.14-72 dated 2014-03-13 and 0.14-256 dated 2014-09-12
Description: Control the number of threads on BLAS(Aka GotoBLAS, ACML and MKL).
--
GotoBLAS(generic) binary for Windows i386 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x86/KATMAI/Rblas.dll
GotoBLAS(generic) binary for Windows x64 http://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/binary/windows/x64/PRESCOTT/Rblas.dll
Author: Junji NAKANO
Maintainer: Ei-ji Nakama
ChangeLog | 4 ++++
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
3 files changed, 11 insertions(+), 7 deletions(-)
Title: An R package for High-Performance Computing
Diff between Rhpc versions 0.14-78 dated 2014-03-22 and 0.14-256 dated 2014-09-12
Description: Rhpc_lapply, Rhpc_lapplyLB and Rhpc_worker_call using MPI provides better HPC environment on R(works fast on HPC).
and this package supports long vector, can deal with slightly big data.
Author: Junji NAKANO
Maintainer: Ei-ji Nakama
ChangeLog | 14 ++
DESCRIPTION | 15 +-
MD5 | 22 ++--
NAMESPACE | 1
R/Rhpc.R | 7 +
R/RhpcRNG.R | 2
configure | 194 +++++++++++++++++++++++++++++--------
configure.ac | 50 ++++++++-
man/Rhpc-package.Rd | 31 ++++-
src/RhpcMPIlapplyseq.h | 8 -
src/worker/RhpcWorker_Lapplyseq.h | 127 +++++++++++-------------
src/worker/RhpcWorker_WorkerCall.h | 2
12 files changed, 322 insertions(+), 151 deletions(-)
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Diff between PReMiuM versions 3.0.29 dated 2014-09-09 and 3.0.30 dated 2014-09-12
Description: This is a package for Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal, survival and categorical response, as well as Normal and discrete covariates. It also allows for fixed effects in the response model, where a spatial CAR (conditional autoregressive) term can be also included. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number of R functions for post-processing of the output are also provided. In addition to fitting mixtures, it may additionally be of interest to determine which covariates actively drive the mixture components. This is implemented in the package as variable selection.
Author: David I. Hastie
Maintainer: Silvia Liverani
PReMiuM-3.0.29/PReMiuM/inst/citation |only
PReMiuM-3.0.30/PReMiuM/DESCRIPTION | 10 -
PReMiuM-3.0.30/PReMiuM/MD5 | 16 -
PReMiuM-3.0.30/PReMiuM/inst/CITATION |only
PReMiuM-3.0.30/PReMiuM/man/PReMiuM-package.Rd | 12 -
PReMiuM-3.0.30/PReMiuM/src/Makevars | 5
PReMiuM-3.0.30/PReMiuM/src/include/Math/distribution.h | 3
PReMiuM-3.0.30/PReMiuM/src/include/PReMiuMArs.h | 137 ++++++++++-------
PReMiuM-3.0.30/PReMiuM/src/include/PReMiuMIO.h | 4
PReMiuM-3.0.30/PReMiuM/src/include/PReMiuMProposals.h | 4
10 files changed, 113 insertions(+), 78 deletions(-)
Title: Meta-Analysis with R
Diff between meta versions 3.7-1 dated 2014-07-29 and 3.8-0 dated 2014-09-12
Description: User-friendly general package providing standard methods for meta-analysis:
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from RevMan 5;
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression (if R package metafor is installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer
DESCRIPTION | 11
MD5 | 110 +++---
NAMESPACE | 22 +
NEWS | 47 ++
R/as.data.frame.meta.R | 2
R/backtransf.R |only
R/baujat.meta.R | 2
R/bubble.metareg.R | 15
R/forest.meta.R | 782 +++++++++++++++++++------------------------------
R/funnel.default.R | 35 --
R/funnel.meta.R | 47 +-
R/is.relative.effect.R |only
R/labbe.metabin.R | 2
R/meta-internal.R | 4
R/metabin.R | 3
R/metacont.R | 6
R/metacor.R | 3
R/metacr.R | 11
R/metacum.R | 4
R/metagen.R | 3
R/metainc.R | 3
R/metainf.R | 4
R/metaprop.R | 5
R/print.meta.R | 140 +++-----
R/print.summary.meta.R | 214 ++++---------
R/settings.meta.R | 28 +
R/summary.meta.R | 5
R/trimfill.default.R | 3
R/trimfill.meta.R | 5
R/update.meta.R | 8
R/warnarg.R | 26 +
R/xlab.R | 102 ++++--
man/amlodipine.Rd | 12
man/baujat.Rd | 12
man/bubble.Rd | 9
man/cisapride.Rd | 18 -
man/forest.Rd | 153 +++++----
man/funnel.Rd | 46 +-
man/labbe.Rd | 6
man/metabias.Rd | 24 -
man/metabin.Rd | 16 -
man/metacont.Rd | 8
man/metacor.Rd | 36 ++
man/metacr.Rd | 27 +
man/metacum.Rd | 2
man/metagen.Rd | 35 +-
man/metainc.Rd | 26 +
man/metainf.Rd | 2
man/metaprop.Rd | 142 +++++++-
man/metareg.Rd | 56 +--
man/print.meta.Rd | 14
man/print.rm5.Rd | 20 -
man/read.mtv.Rd | 14
man/read.rm5.Rd | 22 -
man/settings.meta.Rd | 71 ++--
man/trimfill.Rd | 14
man/update.meta.Rd | 8
57 files changed, 1289 insertions(+), 1156 deletions(-)
Title: Harrell Miscellaneous
Diff between Hmisc versions 3.14-4 dated 2014-04-13 and 3.14-5 dated 2014-09-12
Description: The Hmisc package contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, importing datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX code,
and recoding variables.
Author: Frank E Harrell Jr
Maintainer: Frank E Harrell Jr
DESCRIPTION | 12 ++---
MD5 | 51 +++++++++++-----------
NAMESPACE | 5 ++
NEWS | 17 +++++++
R/Misc.s | 4 -
R/describe.s | 66 +++++++++++++++--------------
R/latex.s | 15 +++++-
R/minor.tick.s | 31 ++++++-------
R/rcspline.plot.s | 2
R/sas.get.s | 106 +++++++++++++++++++++--------------------------
R/stata.get.s | 1
R/summary.formula.s | 4 -
R/summaryM.s | 3 -
R/summaryP.s | 47 +++++++++++---------
R/tabulr.s | 8 +--
R/transace.s | 4 -
R/transcan.s | 10 ++--
R/varclus.s | 11 ++--
R/wtd.stats.s | 2
README.md | 4 +
man/csv.get.Rd | 6 +-
man/describe.Rd | 14 +++++-
man/latexTabular.Rd | 2
man/varclus.Rd | 4 +
tests/dataframeReduce.r |only
tests/latex.s | 19 +++++++-
tests/latex.summaryM.Rnw |only
tests/minor.tick.r |only
28 files changed, 260 insertions(+), 188 deletions(-)
Title: Export tables to LaTeX or HTML
Diff between xtable versions 1.7-3 dated 2014-03-06 and 1.7-4 dated 2014-09-12
Description: Coerce data to LaTeX and HTML tables
Author: David B. Dahl
Maintainer: David Scott
DESCRIPTION | 15
MD5 | 32 -
NEWS | 9
R/print.xtable.R | 30 -
R/table.attributes.R | 8
R/toLatex.R | 2
R/xtable.R | 2
build/vignette.rds |binary
data/tli.txt.gz |binary
inst/doc/margintable.R | 36 -
inst/doc/margintable.pdf |binary
inst/doc/xtableGallery.R | 1166 ++++++++++++++++++++++-----------------------
inst/doc/xtableGallery.pdf |binary
man/print.xtable.Rd | 28 -
man/string.Rd | 4
man/table.attributes.Rd | 2
man/xtable.Rd | 26 -
17 files changed, 682 insertions(+), 678 deletions(-)
Title: TAP-compliant unit testing.
Diff between unittest versions 1.0-0 dated 2014-08-23 and 1.0-1 dated 2014-09-12
Description:
Concise TAP (http://testanything.org/) compliant unit testing package. Authored tests that can be run using CMD check with minimal implementation overhead.
Author: Jamie Lentin [aut],
Anthony Hennessey [aut, cre]
Maintainer: Anthony Hennessey
ChangeLog |only
DESCRIPTION | 10 ++--
MD5 | 8 ++-
README.md |only
man/unittest-package.Rd | 2
tests/test_non_interactive.R | 87 ++++++++++++++++++++++++-------------------
6 files changed, 60 insertions(+), 47 deletions(-)
Title: Bayesian spatial survival analysis with parametric proportional
hazards models.
Diff between spatsurv versions 0.9-6 dated 2014-07-15 and 0.9-7 dated 2014-09-12
Description: an R Package for Bayesian Inference with Spatial Survival Models
Author: Benjamin M. Taylor and Barry S. Rowlingson
Maintainer: Benjamin M. Taylor
DESCRIPTION | 9 -
MD5 | 226 ++++++++++++++---------------
NAMESPACE | 3
NEWS | 9 +
R/log_posteriors_and_derivatives.R | 2
R/postprocessing.R | 12 +
R/spatgrid.R | 10 -
R/spatsurvMisc.R | 12 +
R/survspat.R | 18 +-
man/Et_PP.Rd | 14 -
man/EvalCov.Rd | 10 -
man/ExponentialCovFct.Rd | 7
man/FFTgrid.Rd | 13 -
man/GammafromY.Rd | 11 -
man/MCE.Rd | 19 +-
man/NonSpatialLogLikelihood_or_gradient.Rd | 22 +-
man/QuadApprox.Rd | 22 +-
man/SpikedExponentialCovFct.Rd | 8 -
man/YfromGamma.Rd | 11 -
man/basehazard.Rd | 10 -
man/basehazard.basehazardspec.Rd | 9 -
man/baselinehazard.Rd | 35 +---
man/betapriorGauss.Rd | 16 --
man/checkSurvivalData.Rd | 11 -
man/circulant.Rd | 5
man/circulant.matrix.Rd | 14 -
man/circulant.numeric.Rd | 5
man/circulantij.Rd | 9 -
man/covmodel.Rd | 18 --
man/cumbasehazard.Rd | 13 -
man/cumbasehazard.basehazardspec.Rd | 12 -
man/density_PP.Rd | 5
man/densityquantile.Rd | 14 -
man/densityquantile.basehazardspec.Rd | 12 -
man/densityquantile_PP.Rd | 5
man/derivindepGaussianprior.Rd | 17 --
man/distinfo.Rd | 13 -
man/distinfo.basehazardspec.Rd | 15 -
man/estimateY.Rd | 16 --
man/etapriorGauss.Rd | 15 -
man/exponentialHaz.Rd | 100 ++++--------
man/fixedpars.Rd | 16 --
man/fixmatrix.Rd | 6
man/frailtylag1.Rd | 26 +--
man/gencens.Rd | 24 +--
man/getcov.Rd | 18 --
man/getleneta.Rd | 3
man/getparranges.Rd | 17 --
man/getsurvdata.Rd | 7
man/gompertzHaz.Rd | 100 ++++--------
man/gradbasehazard.Rd | 13 -
man/gradbasehazard.basehazardspec.Rd | 12 -
man/gradcumbasehazard.Rd | 13 -
man/gradcumbasehazard.basehazardspec.Rd | 15 -
man/grid2spdf.Rd | 11 -
man/grid2spix.Rd | 11 -
man/grid2spts.Rd | 11 -
man/gridY.Rd | 5
man/guess_t.Rd | 6
man/hasNext.Rd | 3
man/hasNext.iter.Rd | 7
man/hazard_PP.Rd | 5
man/hazardexceedance.Rd | 22 +-
man/hazardpars.Rd | 16 --
man/hessbasehazard.Rd | 13 -
man/hessbasehazard.basehazardspec.Rd | 12 -
man/hesscumbasehazard.Rd | 13 -
man/hesscumbasehazard.basehazardspec.Rd | 15 -
man/indepGaussianprior.Rd | 23 +-
man/inference.control.Rd | 31 +--
man/invtransformweibull.Rd | 13 -
man/is.burnin.Rd | 6
man/is.retain.Rd | 3
man/iteration.Rd | 6
man/logPosterior.Rd | 35 +---
man/logPosterior_gridded.Rd | 35 +---
man/loop.mcmc.Rd | 5
man/makehamHaz.Rd | 100 ++++--------
man/maxlikparamPHsurv.Rd | 13 -
man/mcmcLoop.Rd | 13 -
man/mcmcPriors.Rd | 40 +----
man/mcmcProgressNone.Rd | 3
man/mcmcProgressPrint.Rd | 3
man/mcmcProgressTextBar.Rd | 3
man/mcmcpars.Rd | 13 -
man/nextStep.Rd | 3
man/omegapriorGauss.Rd | 16 --
man/plotsurv.Rd | 51 ++----
man/posteriorcov.Rd | 33 +---
man/predict.mcmcspatsurv.Rd | 43 +----
man/print.mcmc.Rd | 8 -
man/print.mcmcspatsurv.Rd | 21 +-
man/priorposterior.Rd | 27 +--
man/proposalVariance.Rd | 27 +--
man/proposalVariance_gridded.Rd | 27 +--
man/quantile.mcmcspatsurv.Rd | 21 +-
man/randompars.Rd | 16 --
man/resetLoop.Rd | 3
man/setTxtProgressBar2.Rd | 12 -
man/setupHazard.Rd | 17 --
man/simsurv.Rd | 42 +----
man/spatialpars.Rd | 16 --
man/spatsurv-package.Rd | 41 +++--
man/spatsurvVignette.Rd | 1
man/summary.mcmc.Rd | 11 -
man/summary.mcmcspatsurv.Rd | 17 +-
man/surv3d.Rd | 30 +--
man/survival_PP.Rd | 5
man/survspat.Rd | 39 +----
man/tpowHaz.Rd | 105 ++++---------
man/transformweibull.Rd | 13 -
man/txtProgressBar2.Rd | 23 +-
man/vcov.mcmcspatsurv.Rd | 21 +-
man/weibullHaz.Rd | 100 ++++--------
114 files changed, 990 insertions(+), 1371 deletions(-)
Title: Simultaneous Comparisons for Multiple Endpoints
Diff between SimComp versions 1.9.0 dated 2014-02-28 and 2.2 dated 2014-09-12
Description: Simultaneous tests and confidence intervals are provided for one-way experimental designs with one or many normally distributed, primary response variables (endpoints). Differences (Hasler and Hothorn, 2011) or ratios (Hasler and Hothorn, 2012) of means can be considered. Various contrasts can be chosen, unbalanced sample sizes are allowed as well as heterogeneous variances (Hasler and Hothorn, 2008) or covariance matrices (Hasler, 2014).
Author: Mario Hasler
Maintainer: Mario Hasler
DESCRIPTION | 16 +++--------
MD5 | 68 +++++++++++++++++++++++++++----------------------
NAMESPACE | 4 ++
R/DfSattDiff.R |only
R/DfSattRat.R |only
R/SimCiDiff.R | 5 ++-
R/SimCiDiffHet.R | 1
R/SimCiDiffHom.R | 1
R/SimCiRat.R | 29 ++++++++++----------
R/SimCiRatHet.R | 1
R/SimCiRatHom.R | 1
R/SimTestDiff.R | 5 ++-
R/SimTestDiffHet.R | 5 ++-
R/SimTestDiffHom.R | 5 ++-
R/SimTestRat.R | 29 ++++++++++----------
R/SimTestRatHet.R | 5 ++-
R/SimTestRatHom.R | 5 ++-
R/ermvnorm.R | 8 ++++-
R/plot.SimCi.R |only
R/print.SimCi.R | 1
R/print.SimTest.R | 1
R/rcm.R |only
R/summary.SimCi.R | 1
R/summary.SimTest.R | 1
man/DfSattDiff.Rd |only
man/DfSattRat.Rd |only
man/SimCiDiff.Rd | 40 +++++++++++++++++-----------
man/SimCiRat.Rd | 53 +++++++++++++++++++++-----------------
man/SimComp-package.Rd | 39 ++++++++++++++++++----------
man/SimTestDiff.Rd | 38 +++++++++++++++------------
man/SimTestRat.Rd | 50 ++++++++++++++++++++----------------
man/coagulation.Rd | 12 ++++----
man/ermvnorm.Rd | 65 ++++++++++++++++++++++++++++++----------------
man/plot.SimCi.Rd |only
man/print.SimCi.Rd | 2 -
man/print.SimTest.Rd | 2 -
man/rcm.Rd |only
man/summary.SimCi.Rd | 2 -
man/summary.SimTest.Rd | 2 -
39 files changed, 290 insertions(+), 207 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-11 0.2.3
Title: Modelling Competitive Exclusion and Limited Dispersal in a
Statistical Phylogeographic Framework
Diff between phyloland versions 1.1 dated 2014-08-16 and 1.2 dated 2014-09-12
Description: Phyloland package models a space colonization process mapped onto a phylogeny, it aims at estimating limited dispersal and ecological competitive exclusion in a Bayesian MCMC statistical phylogeographic framework (please refer to phyloland-package help for details.)
Author: Louis Ranjard, Marie Paturel
Maintainer: Louis Ranjard
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/pack_Phylogeo_Functions_g.R | 29 ++++++++++++++++++++++-------
src/main.c | 4 ++--
4 files changed, 31 insertions(+), 16 deletions(-)
Title: Insilico peptide mutation, digestion and homologous comparison.
Diff between PepPrep versions 1.0.1 dated 2014-09-04 and 1.1.0 dated 2014-09-12
Description: Amino acid exchange based on single nucleotide variant (SNV) information and tryptic digestion on peptide sequence. Searching for homologous by comparison of tryptic digested peptide sequences.
Author: Rafael Dellen
Maintainer: Rafael Dellen
ChangeLog | 11 -
DESCRIPTION | 8
MD5 | 12 -
R/CompHomPep_functions.R | 249 +++++++++++++++-----------
R/SNVtoPep_functions.R | 442 ++++++++++++++++++++++++++---------------------
man/compHomToPepFasta.Rd | 19 +-
man/snvToPepFasta.Rd | 21 +-
7 files changed, 442 insertions(+), 320 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-09 0.2.22
2013-12-05 0.2.21
2011-10-23 0.2.20
2011-03-02 0.2.17
2010-09-16 0.2.15
2009-11-01 0.2.13
2009-06-29 0.2.11
2008-08-22 0.2.9
2008-03-27 0.2.8
2008-02-19 0.2.7
2008-02-03 0.2.5
2007-12-14 0.2.4
2007-10-04 0.2.3
2006-09-23 0.2.2
Title: Imputation of Zeros and Nondetects in Compositional Data Sets
Diff between zCompositions versions 1.0.2 dated 2014-09-09 and 1.0.3 dated 2014-09-12
Description: Principled methods to impute multivariate left-censored data and zeros in compositional data sets
Author: Javier Palarea-Albaladejo and Josep Antoni Martin-Fernandez
Maintainer: Javier Palarea-Albaladejo
DESCRIPTION | 6 +++---
MD5 | 12 ++++++------
NEWS | 2 +-
R/multKM.R | 9 +++++----
R/splineKM.R | 7 ++++---
man/multKM.Rd | 4 ++--
man/splineKM.Rd | 5 ++---
7 files changed, 23 insertions(+), 22 deletions(-)
Title: Data and Functions from the book R Graphics, Second Edition
Diff between RGraphics versions 2.0-9 dated 2014-06-10 and 2.0-12 dated 2014-09-12
Description: Data and Functions from the book R Graphics, Second Edition. There is a function to produce each figure in the book, plus several functions, classes, and methods defined in Chapter 8.
Author: Paul Murrell
Maintainer: Paul Murrell
DESCRIPTION | 14
MD5 | 9
R/figures.R | 798
inst/extra/capturecomic_moon.ps |only
inst/extra/comic_moon.ps.xml | 346
inst/extra/tiger.ps.xml |37165 ++++++++++++++++++++--------------------
6 files changed, 19327 insertions(+), 19005 deletions(-)