Wed, 17 Sep 2014

Package Taxonstand updated to version 1.4 with previous version 1.3 dated 2014-02-10

Title: Taxonomic standardization of plant species names
Description: Automated standardization of taxonomic names and removal of orthographic errors in plant species names using the The Plant List (TPL) website (www.theplantlist.org)
Author: Luis Cayuela and Jari Oksanen
Maintainer: Luis Cayuela

Diff between Taxonstand versions 1.3 dated 2014-02-10 and 1.4 dated 2014-09-17

 DESCRIPTION |    8 
 MD5         |    6 
 R/TPLck.R   |  641 ++++++++++++++++++++++++++++++------------------------------
 man/TPL.Rd  |   11 -
 4 files changed, 338 insertions(+), 328 deletions(-)

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New package powerr with initial version 0.1-3
Package: powerr
Type: Package
Title: Analysis of Power System
Version: 0.1-3
Date: 2014-09-17
Authors@R: c(person("Jingfan", "Sun", role=c("aut", "cre"), email="sunjfsjfan@gmail.com"))
Author: Jingfan Sun [aut, cre]
Maintainer: Jingfan Sun
URL: https://github.com/Ambaboo/powerr
Imports: Rcpp (>= 0.11.2)
LinkingTo: Rcpp, RcppEigen (>= 0.3.2.2.0)
Depends: R (>= 3.1.1), methods, tools, Matrix
Description: 'powerr' is used for electric power system analysis and control, including basic power flow analysis and CASCADE analysis. Other features will be updated soon.
License: GPL (>= 2)
Packaged: 2014-09-17 21:16:33 UTC; Outrace
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-18 00:34:37

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Package mapmisc updated to version 1.0.0 with previous version 0.9.4 dated 2014-04-09

Title: Utilities for producing maps
Description: This package contains various utilities for producing nice looking maps in R.
Author: Patrick Brown [aut, cre], Barry Rowlingson [ctb]
Maintainer: Patrick Brown

Diff between mapmisc versions 0.9.4 dated 2014-04-09 and 1.0.0 dated 2014-09-17

 DESCRIPTION              |   15 -
 MD5                      |   56 +++---
 NAMESPACE                |    2 
 R/colourScale.R          |   27 ++
 R/geonames.R             |   22 +-
 R/getTiles.R             |   45 ++--
 R/insetMap.R             |   44 +++-
 R/legendBreaks.R         |    9 
 R/map.new.R              |    8 
 R/openmap.R              |   68 +++----
 R/scaleBar.R             |   21 +-
 R/utils.R                |   10 -
 build/vignette.rds       |binary
 inst/doc/mapLayers.R     |    5 
 inst/doc/mapLayers.pdf   |binary
 inst/doc/mapLayers.rnw   |    1 
 inst/doc/mapmisc.R       |  432 ++++++++++++++++++++++++++++++++++++++--------
 inst/doc/mapmisc.pdf     |binary
 inst/doc/mapmisc.rnw     |  434 ++++++++++++++++++++++++++++++++++++++++-------
 inst/extdata/tiles.RData |binary
 man/colourScale.Rd       |   18 +
 man/geonames.Rd          |   11 -
 man/netherlands.Rd       |   54 +++--
 man/openmap.Rd           |    7 
 man/scaleBar.Rd          |    5 
 tests/openmap.R          |    8 
 vignettes/Makefile       |    3 
 vignettes/mapLayers.rnw  |    1 
 vignettes/mapmisc.rnw    |  434 ++++++++++++++++++++++++++++++++++++++++-------
 29 files changed, 1373 insertions(+), 367 deletions(-)

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Package gfcanalysis updated to version 1.2 with previous version 1.1 dated 2014-03-28

Title: Tools for working with Hansen et al. 2013 Global Forest Change dataset
Description: The gfcanalysis package supports analyses using the Global Forest Change dataset released by Hansen et al. 2013. gfcanalysis was written by the Tropical Ecology Assessment and Monitoring (TEAM) Network (http://www.teamnetwork.org). For additional details on the Global Forest Change dataset, see: Hansen, M. et al. 2013. "High-Resolution Global Maps of 21st-Century Forest Cover Change." Science 342 (15 November): 850-53. Data available on-line from: http://earthenginepartners.appspot.com/science-2013-global-forest
Author: Alex Zvoleff [aut, cre]
Maintainer: Alex Zvoleff

Diff between gfcanalysis versions 1.1 dated 2014-03-28 and 1.2 dated 2014-09-17

 gfcanalysis-1.1/gfcanalysis/man/utm_zone-methods.Rd    |only
 gfcanalysis-1.2/gfcanalysis/DESCRIPTION                |    8 -
 gfcanalysis-1.2/gfcanalysis/MD5                        |   45 +++---
 gfcanalysis-1.2/gfcanalysis/NAMESPACE                  |    5 
 gfcanalysis-1.2/gfcanalysis/NEWS                       |   11 +
 gfcanalysis-1.2/gfcanalysis/R/calc_gfc_tiles.R         |    4 
 gfcanalysis-1.2/gfcanalysis/R/extract_gfc.R            |  111 ++++++++++++++---
 gfcanalysis-1.2/gfcanalysis/R/gfc_stats.R              |    3 
 gfcanalysis-1.2/gfcanalysis/R/threshold_gfc.R          |   10 -
 gfcanalysis-1.2/gfcanalysis/R/utm_zone.R               |    8 -
 gfcanalysis-1.2/gfcanalysis/man/animate_annual.Rd      |   55 +++-----
 gfcanalysis-1.2/gfcanalysis/man/annual_stack.Rd        |   31 ++--
 gfcanalysis-1.2/gfcanalysis/man/calc_gfc_tiles.Rd      |   15 +-
 gfcanalysis-1.2/gfcanalysis/man/calc_pixel_areas.Rd    |    8 -
 gfcanalysis-1.2/gfcanalysis/man/download_tiles.Rd      |   26 +--
 gfcanalysis-1.2/gfcanalysis/man/extract_gfc.Rd         |   43 +++---
 gfcanalysis-1.2/gfcanalysis/man/gen_grid.Rd            |   26 +--
 gfcanalysis-1.2/gfcanalysis/man/gfc_stats.Rd           |   53 +++-----
 gfcanalysis-1.2/gfcanalysis/man/gfc_tiles.Rd           |    8 -
 gfcanalysis-1.2/gfcanalysis/man/plot_gfc.Rd            |   26 +--
 gfcanalysis-1.2/gfcanalysis/man/scale_by_pixel_area.Rd |   33 ++---
 gfcanalysis-1.2/gfcanalysis/man/scale_toar.Rd          |only
 gfcanalysis-1.2/gfcanalysis/man/test_poly.Rd           |    8 -
 gfcanalysis-1.2/gfcanalysis/man/threshold_gfc.Rd       |  103 +++++++++------
 gfcanalysis-1.2/gfcanalysis/man/utm_zone.Rd            |only
 25 files changed, 371 insertions(+), 269 deletions(-)

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New package aRxiv with initial version 0.5.2
Package: aRxiv
Title: Interface to the arXiv API
Version: 0.5.2
Date: 2014-09-17
Authors@R: c(person("Karthik", "Ram", role="aut", email="karthik.ram@gmail.com"), person("Karl", "Broman", rol=c("aut","cre"), email="kbroman@biostat.wisc.edu"))
Description: An interface to the API for arXiv, a repository of electronic preprints for computer science, mathematics, physics, quantitative biology, quantitative finance, and statistics.
URL: https://github.com/ropensci/aRxiv
BugReports: https://github.com/ropensci/aRxiv/issues
Depends: R (>= 3.0.0)
License: MIT + file LICENSE
Imports: httr, utils, XML
Suggests: devtools, knitr, roxygen2, testthat
VignetteBuilder: knitr
LazyData: true
Packaged: 2014-09-17 16:14:55 UTC; kbroman
Author: Karthik Ram [aut], Karl Broman [aut, cre]
Maintainer: Karl Broman
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-18 01:01:41

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New package adaptDA with initial version 1.0
Package: adaptDA
Type: Package
Title: Adaptive Mixture Discriminant Analysis
Version: 1.0
Date: 2014-09-15
Author: Charles Bouveyron
Maintainer: Charles Bouveyron
Depends: MASS
Description: The adaptive mixture discriminant analysis (AMDA) allows to adapt a model-based classifier to the situation where a class represented in the test set may have not been encountered earlier in the learning phase.
License: GPL-2
LazyLoad: yes
Packaged: 2014-09-17 20:23:28 UTC; charles
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-18 01:00:33

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Package RadioSonde updated to version 1.4 with previous version 1.3 dated 2010-09-20

Title: Tools for plotting skew-T diagrams and wind profiles
Description: RadioSonde is a collection of programs for reading and plotting SKEW-T,log p diagrams and wind profiles for data collected by radiosondes (the typical weather balloon-borne instrument), which we will call "flights", "sondes", or "profiles" throughout the associated documentation. The raw data files are in a common format that has a header followed by specific variables. Use "help(ExampleSonde)" for the full explanation of the data files.
Author: Doug Nychka, Eric Gilleland, Liangying Zhang, Tim Hoar
Maintainer: Doug Nychka

Diff between RadioSonde versions 1.3 dated 2010-09-20 and 1.4 dated 2014-09-17

 DESCRIPTION       |   15 ++++++++-------
 MD5               |only
 NAMESPACE         |only
 man/getsonde.Rd   |    2 +-
 man/plotsonde.Rd  |    2 +-
 man/plotwind.Rd   |    2 +-
 man/skewt.axis.Rd |    2 +-
 7 files changed, 12 insertions(+), 11 deletions(-)

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New package RMOAjars with initial version 1.0
Package: RMOAjars
Version: 1.0
Title: External jars required for package RMOA
Author: See file AUTHORS
Description: External jars required for package RMOA. RMOA is a framework to build data stream models on top of MOA (Massive Online Analysis - http://moa.cms.waikato.ac.nz)
Depends: R (>= 2.6.0)
Imports: rJava (>= 0.6-3)
SystemRequirements: Java (>= 5.0)
License: GPL-3
Copyright: See file COPYRIGHTS
Maintainer: Jan Wijffels
URL: http://moa.cms.waikato.ac.nz/, https://github.com/jwijffels/RMOA
Packaged: 2014-09-17 06:43:14 UTC; janw
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 18:33:28

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New package rmarkdown with initial version 0.3.3
Package: rmarkdown
Type: Package
Title: Dynamic Documents for R
Version: 0.3.3
Date: 2014-09-08
Author: JJ Allaire, Jonathan McPherson, Yihui Xie, Hadley Wickham, Joe Cheng, Jeff Allen
Maintainer: JJ Allaire
Description: Convert R Markdown documents into a variety of formats including HTML, MS Word, PDF, and Beamer.
Depends: R (>= 3.0)
Imports: tools, utils, knitr (>= 1.6), yaml (>= 2.1.5), htmltools (>= 0.2.4), caTools
Suggests: shiny (>= 0.10.1), testthat, digest
SystemRequirements: pandoc (>= 1.12.3) - http://johnmacfarlane.net/pandoc
URL: http://rmarkdown.rstudio.com
License: GPL-3
Packaged: 2014-09-17 11:35:12 UTC; jjallaire
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 18:12:29

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New package qgtools with initial version 1.0
Package: qgtools
Type: Package
Title: Tools for Quantitative Genetics Data Analyses
Version: 1.0
Date: 2014-09-05
Author: Jixiang Wu (South Dakota State University), Johnie N. Jenkins and Jack C. McCarty (USDA-ARS)
Maintainer: Jixiang Wu
Description: Two linear mixed model approaches: REML(restricted maximum likelihood) and MINQUE (minimum norm quadratic unbiased estimation) approaches and several resampling techniques are integrated for various quantitative genetics analyses. With these two types of approaches, various unbalanced data structures, missing data, and any irregular genetic mating designs can be analyzed and statistically tested. This package also offers fast computations for many large data sets. Other functions will be added to this R tool in the future.
License: GPL-2
LazyLoad: yes
Depends: stats,utils,Matrix, MASS
Packaged: 2014-09-16 02:38:25 UTC; Owner
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 18:12:26

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Package party updated to version 1.0-17 with previous version 1.0-16 dated 2014-08-19

Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning. The core of the package is ctree(), an implementation of conditional inference trees which embed tree-structured regression models into a well defined theory of conditional inference procedures. This non-parametric class of regression trees is applicable to all kinds of regression problems, including nominal, ordinal, numeric, censored as well as multivariate response variables and arbitrary measurement scales of the covariates. Based on conditional inference trees, cforest() provides an implementation of Breiman's random forests. The function mob() implements an algorithm for recursive partitioning based on parametric models (e.g. linear models, GLMs or survival regression) employing parameter instability tests for split selection. Extensible functionality for visualizing tree-structured regression models is available.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Carolin Strobl [aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn

Diff between party versions 1.0-16 dated 2014-08-19 and 1.0-17 dated 2014-09-17

 DESCRIPTION        |   10 +++++-----
 MD5                |   14 +++++++-------
 NAMESPACE          |    1 +
 R/zInitMethods.R   |    3 +++
 build/vignette.rds |binary
 inst/NEWS          |    6 ++++++
 inst/doc/MOB.pdf   |binary
 inst/doc/party.pdf |binary
 8 files changed, 22 insertions(+), 12 deletions(-)

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Package gamlss updated to version 4.3-1 with previous version 4.3-0 dated 2014-06-03

Title: Generalised Additive Models for Location Scale and Shape.
Description: The library for fitting GAMLSS models.
Author: Mikis Stasinopoulos , Bob Rigby Vlasios Voudouris with contributions from Calliope Akantziliotou, and Marco Enea
Maintainer: Mikis Stasinopoulos

Diff between gamlss versions 4.3-0 dated 2014-06-03 and 4.3-1 dated 2014-09-17

 gamlss-4.3-0/gamlss/R/lms-20-6-13.r     |only
 gamlss-4.3-1/gamlss/DESCRIPTION         |   10 
 gamlss-4.3-1/gamlss/MD5                 |   29 -
 gamlss-4.3-1/gamlss/NAMESPACE           |   20 -
 gamlss-4.3-1/gamlss/R/centile-pred.R    |    2 
 gamlss-4.3-1/gamlss/R/centilesFan.R     |  259 +++++++--------
 gamlss-4.3-1/gamlss/R/centilesPLOT.R    |  543 ++++++++++++++++----------------
 gamlss-4.3-1/gamlss/R/centilescom.R     |  318 +++++++++---------
 gamlss-4.3-1/gamlss/R/gamlss-01-05-13.R |    6 
 gamlss-4.3-1/gamlss/R/lms.R             |only
 gamlss-4.3-1/gamlss/R/qstats-29-12-12.R |    3 
 gamlss-4.3-1/gamlss/R/quantSheets.R     |only
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 gamlss-4.3-1/gamlss/inst/doc/NEWS.txt   |   29 +
 gamlss-4.3-1/gamlss/man/centiles.Rd     |  197 +++++------
 gamlss-4.3-1/gamlss/man/lms.Rd          |   15 
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 18 files changed, 741 insertions(+), 698 deletions(-)

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Package coin updated to version 1.0-24 with previous version 1.0-23 dated 2013-09-03

Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.
Author: Torsten Hothorn [aut, cre], Kurt Hornik [aut], Mark A. van de Wiel [aut], Achim Zeileis [aut]
Maintainer: Torsten Hothorn

Diff between coin versions 1.0-23 dated 2013-09-03 and 1.0-24 dated 2014-09-17

 coin-1.0-23/coin/inst/NEWS                        |only
 coin-1.0-24/coin/DESCRIPTION                      |    8 -
 coin-1.0-24/coin/MD5                              |   43 ++++----
 coin-1.0-24/coin/R/ExactDistributions.R           |    6 -
 coin-1.0-24/coin/R/InitMethods.R                  |   22 ++++
 coin-1.0-24/coin/build                            |only
 coin-1.0-24/coin/data/alpha.rda                   |binary
 coin-1.0-24/coin/data/asat.rda                    |binary
 coin-1.0-24/coin/data/glioma.rda                  |binary
 coin-1.0-24/coin/data/mercuryfish.rda             |binary
 coin-1.0-24/coin/data/neuropathy.rda              |binary
 coin-1.0-24/coin/data/ocarcinoma.rda              |binary
 coin-1.0-24/coin/data/photocar.rda                |binary
 coin-1.0-24/coin/data/rotarod.rda                 |binary
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 coin-1.0-24/coin/inst/doc/MAXtest.pdf             |binary
 coin-1.0-24/coin/inst/doc/coin.pdf                |binary
 coin-1.0-24/coin/inst/doc/coin_implementation.pdf |binary
 coin-1.0-24/coin/man/initialize-methods.Rd        |    6 +
 coin-1.0-24/coin/tests/Examples/coin-Ex.Rout.save |  108 ++++++++++++++++++++--
 coin-1.0-24/coin/tests/bugfixes.R                 |   22 ++++
 coin-1.0-24/coin/tests/bugfixes.Rout.save         |   29 +++++
 24 files changed, 208 insertions(+), 36 deletions(-)

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Package geostatsp updated to version 1.0.0 with previous version 0.9.999 dated 2014-08-04

Title: Geostatistics using SpatialPoints and rasters
Description: This package provides to geostatistical modelling facilities using raster and SpatialPoints objects.
Author: Patrick Brown [aut, cre], Robert Hijmans [ctb]
Maintainer: Patrick Brown

Diff between geostatsp versions 0.9.999 dated 2014-08-04 and 1.0.0 dated 2014-09-17

 DESCRIPTION            |   15 -
 MD5                    |   43 ++--
 NAMESPACE              |   11 -
 R/RFsimulate.R         |  454 ++++++++++++++++++++++++++++++++++---------------
 R/excProb.R            |    5 
 R/lgm.R                |   21 +-
 R/lgm.Raster.R         |only
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 R/param.R              |   15 +
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 R/stackRasterList.R    |    4 
 R/variog.R             |   24 ++
 data/datalist          |    1 
 data/swissRainR.RData  |only
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 man/lgm.Rd             |   91 +++++++--
 man/likfitLgm.Rd       |    3 
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 man/stackRasterList.Rd |    2 
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 tests/RFsimulate.R     |   59 ++++--
 tests/lgm.R            |    7 
 tests/lgmRaster.R      |only
 tests/likfitLgm.R      |    5 
 25 files changed, 584 insertions(+), 255 deletions(-)

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Package gamlss.dist updated to version 4.3-1 with previous version 4.3-0 dated 2014-06-03

Title: Distributions to be used for GAMLSS modelling.
Description: This package contains the distributions for GAMLSS modelling.
Author: Mikis Stasinopoulos , Bob Rigby with contributions from Calliope Akantziliotou, Gillian Heller, Raydonal Ospina , Nicoletta Motpan, Fiona McElduff, Vlasios Voudouris, Majid Djennad, Marco Enea and Alexios Ghalanos.
Maintainer: Mikis Stasinopoulos

Diff between gamlss.dist versions 4.3-0 dated 2014-06-03 and 4.3-1 dated 2014-09-17

 DESCRIPTION     |    8 -
 MD5             |   18 +--
 NAMESPACE       |    5 
 R/BE.R          |  220 ++++++++++++++++++++---------------------
 R/BEo.R         |  184 +++++++++++++++++------------------
 R/DELAPORT.R    |   66 +++++++++---
 R/ZAGA.R        |  274 ++++++++++++++++++++++++++--------------------------
 R/ZAIG.R        |  294 ++++++++++++++++++++++++++++----------------------------
 R/flexDist.R    |only
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 11 files changed, 561 insertions(+), 522 deletions(-)

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New package fCopulae with initial version 3011.81
Package: fCopulae
Title: Rmetrics - Bivariate Dependence Structures with Copulae
Date: 2013-03-18
Version: 3011.81
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre] Yohan Chalabi [ctb]
Maintainer: Tobias Setz
Description: Environment for teaching "Financial Engineering and Computational Finance".
Depends: R (>= 2.15.1), timeDate, timeSeries, fBasics, fMultivar
Suggests: methods, RUnit, tcltk, mvtnorm, sn
Note: SEVERAL PARTS ARE STILL PRELIMINARY AND MAY BE CHANGED IN THE FUTURE. THIS TYPICALLY INCLUDES FUNCTION AND ARGUMENT NAMES, AS WELL AS DEFAULTS FOR ARGUMENTS AND RETURN VALUES.
LazyData: yes
License: GPL (>= 2)
URL: https://www.rmetrics.org
Packaged: 2014-09-16 14:55:28 UTC; Tobi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-17 15:56:52

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Package dnet updated to version 1.0.6 with previous version 1.0.5 dated 2014-07-02

Title: Integrative analysis of omics data in terms of network, evolution and ontology
Description: This package is initiated to fill in the need of an open-source tool for high-throughput omics data in an integrative manner in terms of network, evolution and ontology. More specifically, dnet intends to analyse the biological network whose nodes/genes are associated with digitised information such as expression levels across samples. To help make sense of identified networks, enrichment analysis is also supported using a wide variety of pre-compiled ontologies and phylostratific gene age information in major organisms including human, mouse, rat, chicken, C.elegans, fruit fly, zebrafish and arabidopsis. Add-on functionalities are supports for semantic similarity calculation between ontology terms (and genes), and network affinity calculation using Random Walk with Restart; both can be done via high-performance parallel computing. In summary, dnet aims to deliver an eye-intuitive tool with rich visuals but less inputs.
Author: Hai Fang and Julian Gough
Maintainer: Hai Fang

Diff between dnet versions 1.0.5 dated 2014-07-02 and 1.0.6 dated 2014-09-17

 DESCRIPTION                      |   18 +-
 MD5                              |  111 ++++++-------
 NAMESPACE                        |    4 
 R/dCheckParallel.r               |    2 
 R/dEnricher.r                    |   11 +
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 inst/staticdocs/demo/TCGA_pre.r  |   47 ++++-
 inst/staticdocs/faq/FAQ1.r       |    4 
 man/dBUMfit.Rd                   |   98 +++++------
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 man/dCheckParallel.Rd            |   26 +--
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 man/dDAGannotate.Rd              |   67 +++----
 man/dDAGgeneSim.Rd               |  170 +++++++++-----------
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 man/dEnricher.Rd                 |  330 ++++++++++++++++++---------------------
 man/dEnricherView.Rd             |   60 +++----
 man/dFDRscore.Rd                 |   38 ++--
 man/dGSEA.Rd                     |  325 ++++++++++++++++++--------------------
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 man/dNetInduce.Rd                |   53 +++---
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 man/dNetReorder.Rd               |  196 +++++++++++------------
 man/dPvalAggregate.Rd            |   43 ++---
 man/dRDataLoader.Rd              |  113 +++++--------
 man/dRWR.Rd                      |  160 ++++++++----------
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 man/dRWRpipeline.Rd              |  190 ++++++++++------------
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 man/visBoxplotAdv.Rd             |  139 +++++++---------
 man/visDAG.Rd                    |  205 ++++++++++++------------
 man/visGSEA.Rd                   |   37 ++--
 man/visNet.Rd                    |  129 ++++++---------
 man/visNetArc.Rd                 |   61 +++----
 man/visNetCircle.Rd              |  102 +++++-------
 man/visNetMul.Rd                 |   99 +++++------
 man/visNetReorder.Rd             |   99 +++++------
 57 files changed, 2005 insertions(+), 2120 deletions(-)

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Package yuima updated to version 1.0.30 with previous version 1.0.28 dated 2014-09-03

Title: The YUIMA Project package for SDEs
Description: Simulation and Inference for Stochastic Differential Equations
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus

Diff between yuima versions 1.0.28 dated 2014-09-03 and 1.0.30 dated 2014-09-17

 DESCRIPTION                   |    8 +-
 MD5                           |   14 ++--
 NEWS                          |    3 
 R/AllClasses.R                |   14 ++--
 R/qmle.R                      |  103 ++++++++++++++++++++++++--------
 R/yuima.R                     |    7 ++
 man/yuima.carma.qmle-class.Rd |    1 
 src/cce_functions.c           |  132 ++++++++++++++++++++++--------------------
 8 files changed, 179 insertions(+), 103 deletions(-)

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Package simsalapar updated to version 1.0-4 with previous version 1.0-3 dated 2014-06-10

Title: Tools for Simulation Studies in Parallel with R
Description: Tools for setting up, conducting, and evaluating larger-scale simulation studies, including parallel computations.
Author: Marius Hofert and Martin Maechler
Maintainer: Marius Hofert

Diff between simsalapar versions 1.0-3 dated 2014-06-10 and 1.0-4 dated 2014-09-17

 DESCRIPTION            |   20 +++++++++-------
 MD5                    |   22 +++++++++---------
 NAMESPACE              |    5 +++-
 R/doApply.R            |   59 +++++++++++++++++++++++++++++++++----------------
 R/subjob.R             |    9 ++++++-
 R/tryCatchWE.R         |    3 ++
 demo/TGforecasts.R     |    1 
 demo/VaRsuperadd.R     |   13 +++++-----
 demo/robcovMCD.R       |    4 +--
 demo/robust.mean.R     |    4 ---
 man/doApply.Rd         |   16 +++++--------
 tests/tstTGforecasts.R |   18 +++++++++++---
 12 files changed, 109 insertions(+), 65 deletions(-)

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Package EntropyEstimation updated to version 1.0 with previous version 0.1 dated 2014-04-12

Title: Estimation of Entropy and Related Quantities
Description: Contains methods for the estimation of Shannon's entropy, variants of Renyi's entropy, mutual information, Kullback-Leibler divergence, and generalized Simpson's indices. The estimators used have a bias that decays exponentially fast.
Author: Lijuan Cao and Michael Grabchak
Maintainer: Michael Grabchak

Diff between EntropyEstimation versions 0.1 dated 2014-04-12 and 1.0 dated 2014-09-17

 DESCRIPTION                      |   12 ++++++------
 MD5                              |   18 +++++++++---------
 man/EntropyEstimation-package.Rd |   10 +++++-----
 man/KL.Plugin.Rd                 |    2 +-
 man/KL.sd.Rd                     |    2 +-
 man/KL.z.Rd                      |    2 +-
 man/SymKL.Plugin.Rd              |    2 +-
 man/SymKL.sd.Rd                  |    2 +-
 man/SymKL.z.Rd                   |    2 +-
 src/EntropEst.c                  |    8 ++++----
 10 files changed, 30 insertions(+), 30 deletions(-)

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