Fri, 19 Sep 2014

Package intervals updated to version 0.15.0 with previous version 0.14.0 dated 2013-03-07

Title: Tools for working with points and intervals
Description: Tools for working with and comparing sets of points and intervals.
Author: Richard Bourgon
Maintainer: Edzer Pebesma

Diff between intervals versions 0.14.0 dated 2013-03-07 and 0.15.0 dated 2014-09-19

 DESCRIPTION                     |   18 +++++++++---------
 MD5                             |   15 +++++++++------
 NAMESPACE                       |   16 ++++------------
 build                           |only
 inst/doc/intervals_overview.R   |only
 inst/doc/intervals_overview.pdf |binary
 src/plot_overlap.cpp            |    7 +------
 src/reduce.cpp                  |   11 ++++-------
 src/which_nearest.cpp           |    6 +++---
 vignettes                       |only
 10 files changed, 30 insertions(+), 43 deletions(-)

More information about intervals at CRAN
Permanent link

Package spdep updated to version 0.5-77 with previous version 0.5-74 dated 2014-06-06

Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix objects from polygon contiguities, from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial autocorrelation, including global Moran's I, APLE, Geary's C, Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assunção/Reis Index, Getis/Ord G and multicoloured join count statistics, local Moran's I and Getis/Ord G, saddlepoint approximations and exact tests for global and local Moran's I; and functions for estimating spatial simultaneous autoregressive (SAR) lag and error models, impact measures for lag models, weighted and unweighted SAR and CAR spatial regression models, semi-parametric and Moran eigenvector spatial filtering, GM SAR error models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut], Micah Altman [ctb], Luc Anselin [ctb], Renato Assunção [ctb], Olaf Berke [ctb], Andrew Bernat [ctb], Guillaume Blanchet [ctb], Eric Blankmeyer [ctb], Marilia Carvalho [ctb], Bjarke Christensen [ctb], Yongwan Chun [ctb], Carsten Dormann [ctb], Stéphane Dray [ctb], Virgilio Gómez-Rubio [ctb], Rein Halbersma [ctb], Elias Krainski [ctb], Pierre Legendre [ctb], Nicholas Lewin-Koh [ctb], Hongfei Li [ctb], Jielai Ma [ctb], Giovanni Millo [ctb], Werner Mueller [ctb], Hisaji Ono [ctb], Pedro Peres-Neto [ctb], Gianfranco Piras [ctb], Markus Reder [ctb], Michael Tiefelsdorf [ctb], Danlin Yu [ctb]
Maintainer: Roger Bivand

Diff between spdep versions 0.5-74 dated 2014-06-06 and 0.5-77 dated 2014-09-19

 ChangeLog                     |   32 +++++++++++++++++++++++++
 DESCRIPTION                   |   15 ++++++-----
 MD5                           |   53 +++++++++++++++++++++---------------------
 NAMESPACE                     |    4 +++
 R/aple.mc.R                   |    2 -
 R/bptest.sarlm.R              |    2 -
 R/dnearneigh.R                |   11 +++++++-
 R/impacts.R                   |    4 +--
 R/jacobian.R                  |   36 ++++++++++++++++++++--------
 R/knearneigh.R                |    5 ++-
 R/listw2sn.R                  |   18 +++++++-------
 R/nb2listw.R                  |   16 +++++++-----
 R/nbcosts.R                   |    4 +--
 R/prunecost.R                 |    4 +--
 R/tri2nb.R                    |    6 ++++
 build/vignette.rds            |binary
 inst/ChangeLog                |   32 +++++++++++++++++++++++++
 inst/copyright.diff           |only
 inst/doc/CO69.pdf             |binary
 inst/doc/SpatialFiltering.pdf |binary
 inst/doc/nb.pdf               |binary
 inst/doc/sids.pdf             |binary
 man/dnearneigh.Rd             |    5 ++-
 man/do_ldet.Rd                |    4 +++
 man/nb2listw.Rd               |    7 +++--
 man/summary.nb.Rd             |    2 -
 src/dnn.c                     |    8 ++++--
 src/soigraph.c                |    5 ++-
 28 files changed, 197 insertions(+), 78 deletions(-)

More information about spdep at CRAN
Permanent link

Package spMC updated to version 0.3.4 with previous version 0.3.2 dated 2014-08-22

Title: Continuous Lag Spatial Markov Chains
Description: The main goal of this package is to provide a set of functions for 1) the stratum lengths analysis along a chosen direction, 2) fast estimation of continuous lag spatial Markov chains model parameters and probability computing (also for large data sets), 3) transition probability maps and transiograms drawing, 4) simulation methods for categorical random fields.
Author: Luca Sartore
Maintainer: Luca Sartore

Diff between spMC versions 0.3.2 dated 2014-08-22 and 0.3.4 dated 2014-09-19

 DESCRIPTION             |    8 
 MD5                     |   36 ++--
 NEWS                    |   37 ++++
 R/is.transiogram.R      |    6 
 R/plot.transiogram.R    |   34 +++-
 R/quench.R              |only
 R/sim_ck.R              |   81 ---------
 R/sim_ik.R              |   81 ---------
 R/transiogram.R         |  122 ++++++++++++--
 man/plot.transiogram.Rd |    9 -
 man/quench.Rd           |only
 man/sim_ck.Rd           |   21 --
 man/sim_ik.Rd           |   20 --
 man/spMC-package.Rd     |    4 
 man/transiogram.Rd      |    1 
 src/Makevars            |    2 
 src/spMC.c              |  404 +-----------------------------------------------
 src/spMC.h              |   47 ++++-
 src/trans.h             |only
 src/wfun.h              |only
 tests/spMC-Ex.R         |   20 +-
 21 files changed, 299 insertions(+), 634 deletions(-)

More information about spMC at CRAN
Permanent link

New package opentraj with initial version 1.0
Package: opentraj
Type: Package
Title: Tools for Creating and Analysing Air Trajectory Data
Version: 1.0
Date: 2014-08-22
Author: Thalles Santos Silva
Maintainer: Thalles Silva
Description: opentraj uses the Hybrid Single Particle Lagrangian Integrated Trajectory Model (HYSPLIT) for computing simple air parcel trajectories. The functions in this package allow users to run HYSPLIT for trajectory calculations, as well as get its results, directly from R without using any GUI interface.
License: GPL-2
Imports: plyr, maptools, openair, raster, rgdal, reshape, doParallel, parallel, foreach, sp
LazyData: yes
Packaged: 2014-09-19 13:19:58 UTC; thalles
Depends: R (>= 2.10)
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 17:35:43

More information about opentraj at CRAN
Permanent link

Package gdsfmt updated to version 1.1.0.1 with previous version 1.1.0 dated 2014-09-11

Title: R Interface to CoreArray Genomic Data Structure (GDS) files
Description: This package provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files, which are portable across platforms and include hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited for large-scale datasets, especially for data which are much larger than the available random-access memory. The gdsfmt package offers the efficient operations specifically designed for integers with less than 8 bits, since a single genetic/genomic variant, such like single-nucleotide polymorphism, usually occupies fewer bits than a byte. Data compression and decompression are also supported. It is allowed to read a GDS file in parallel with multiple R processes supported by the parallel package.
Author: Xiuwen Zheng
Maintainer: Xiuwen Zheng

Diff between gdsfmt versions 1.1.0 dated 2014-09-11 and 1.1.0.1 dated 2014-09-19

 DESCRIPTION     |    8 ++++----
 MD5             |    4 ++--
 src/dPlatform.h |    4 ++++
 3 files changed, 10 insertions(+), 6 deletions(-)

More information about gdsfmt at CRAN
Permanent link

New package BOIN with initial version 1.0
Package: BOIN
Type: Package
Title: Bayesian Optimal Interval Design for Phase I Clinical Trials
Version: 1.0
Date: 2014-08-14
Author: Ying Yuan and Suyu Liu
Maintainer: Ying Yuan
Description: The Bayesian optimal interval (BOIN) design is a novel phase I clinical trial design for finding the maximum tolerated dose (MTD). The BOIN design is motivated by the top priority and concern of clinicians when testing a new drug, which is to effectively treat patients and minimize the chance of exposing them to subtherapeutic or overly toxic doses. The prominent advantage of the BOIN design is that it achieves simplicity and superior performance at the same time. The BOIN design is algorithm-based and can be implemented in a simple way similar to the traditional 3+3 design. The BOIN design yields average performance comparable to the continual reassessment method (CRM, one of the best model-based design) in terms of selecting the MTD, but has a substantially lower risk of assigning patients to subtherapeutic or overly toxic doses.
License: GPL-2
Packaged: 2014-09-19 14:36:20 UTC; yingyuan
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 17:28:46

More information about BOIN at CRAN
Permanent link

Package wild1 (with last version 1.09) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-01 1.09
2010-12-04 1.08
2010-11-22 1.07

Permanent link
Package wnominate (with last version 0.98) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-17 0.98
2011-07-23 0.96
2011-05-26 0.95
2007-09-01 0.94
2007-01-13 0.93

Permanent link
Package weathermetrics (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-08-07 1.0

Permanent link
Package varcompci (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-05 1.0.1

Permanent link
Package roxygen (with last version 0.1-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-12-23 0.1-3
2009-11-12 0.1-2
2008-08-31 0.1

Permanent link
Package survJamda.data (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-11 1.0.1
2010-10-10 1.0

Permanent link
Package survBayes (with last version 0.2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-06-05 0.2.2
2009-02-23 0.2.1.1
2007-02-22 0.2.1

Permanent link
Package scaleboot (with last version 0.3-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-05-16 0.3-3
2008-02-05 0.3-2
2006-11-15 0.2-2

Permanent link
Package survJamda (with last version 1.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-03-08 1.1.2
2011-01-19 1.1.1
2010-12-06 1.0.1
2010-10-10 1.0

Permanent link
Package sugaR (with last version 0.0-5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-06-07 0.0-5
2009-06-02 0.0-4

Permanent link
Package rcqp (with last version 0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-10-19 0.3
2012-06-26 0.1

Permanent link
Package speedRlibTF (with last version 0.3-39) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-31 0.3-39

Permanent link
Package standGL (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-09 1.1
2011-11-17 1.0

Permanent link
Package treethresh (with last version 0.1-7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-08-31 0.1-7
2012-08-29 0.1-6
2010-01-07 0.1-5
2010-01-04 0.1-4
2009-07-26 0.1-3

Permanent link
Package randomUniformForest updated to version 1.0.8 with previous version 1.0.6 dated 2014-05-29

Title: Random Uniform Forests for Classification and Regression
Description: Ensemble model, for classification and regression, based on a forest of unpruned and randomized binary trees. Each tree is grown by sampling, with replacement, a set of variables at each node. Each cut-point is generated randomly, according to the Uniform distribution on the support of each candidate variable. Optimal random node is, then, selected by maximizing information gain (classification) or minimizing 'L2' (or 'L1') distance (regression). Data are either bootstrapped or sub-sampled for each tree. Random Uniform Forests are aimed to lower correlation between trees, to offer more details about variable importance and selection and to allow native incremental learning.
Author: Saip Ciss
Maintainer: Saip Ciss

Diff between randomUniformForest versions 1.0.6 dated 2014-05-29 and 1.0.8 dated 2014-09-19

 randomUniformForest-1.0.6/randomUniformForest/R/OnliningRandomUniformForests.r          |only
 randomUniformForest-1.0.6/randomUniformForest/R/genericFunctions.r                      |only
 randomUniformForest-1.0.8/randomUniformForest/DESCRIPTION                               |   16 
 randomUniformForest-1.0.8/randomUniformForest/MD5                                       |   43 
 randomUniformForest-1.0.8/randomUniformForest/NEWS                                      |only
 randomUniformForest-1.0.8/randomUniformForest/R/DecisionTreesCPP.R                      |  174 +-
 randomUniformForest-1.0.8/randomUniformForest/R/OnliningRandomUniformForests.R          |only
 randomUniformForest-1.0.8/randomUniformForest/R/RandomUniformForestsCPP.R               |  759 ++++++----
 randomUniformForest-1.0.8/randomUniformForest/R/genericFunctions.R                      |only
 randomUniformForest-1.0.8/randomUniformForest/build                                     |only
 randomUniformForest-1.0.8/randomUniformForest/inst/doc                                  |only
 randomUniformForest-1.0.8/randomUniformForest/man/bCI.Rd                                |    4 
 randomUniformForest-1.0.8/randomUniformForest/man/fillNA2.randomUniformForest.Rd        |   14 
 randomUniformForest-1.0.8/randomUniformForest/man/importance.randomUniformForest.Rd     |    2 
 randomUniformForest-1.0.8/randomUniformForest/man/internalFunctions.Rd                  |    6 
 randomUniformForest-1.0.8/randomUniformForest/man/partialDependenceBetweenPredictors.Rd |   20 
 randomUniformForest-1.0.8/randomUniformForest/man/partialDependenceOverResponses.Rd     |    8 
 randomUniformForest-1.0.8/randomUniformForest/man/postProcessingVotes.Rd                |    4 
 randomUniformForest-1.0.8/randomUniformForest/man/predict.randomUniformForest.Rd        |   10 
 randomUniformForest-1.0.8/randomUniformForest/man/rUniformForest.big.Rd                 |    2 
 randomUniformForest-1.0.8/randomUniformForest/man/rUniformForest.combine.Rd             |    6 
 randomUniformForest-1.0.8/randomUniformForest/man/randomUniformForest-package.Rd        |   15 
 randomUniformForest-1.0.8/randomUniformForest/man/randomUniformForest.Rd                |   75 
 randomUniformForest-1.0.8/randomUniformForest/man/roc.curve.Rd                          |   27 
 randomUniformForest-1.0.8/randomUniformForest/man/simulationData.Rd                     |    6 
 randomUniformForest-1.0.8/randomUniformForest/vignettes                                 |only
 26 files changed, 736 insertions(+), 455 deletions(-)

More information about randomUniformForest at CRAN
Permanent link

New package nat.nblast with initial version 1.5
Package: nat.nblast
Type: Package
Title: NeuroAnatomy Toolbox (nat) Extension for Assessing Neuron Similarity and Clustering
Version: 1.5
Date: 2014-09-18
Author: Greg Jefferis and James Manton
Maintainer: James Manton
Description: Extends package nat (NeuroAnatomy Toolbox) by providing a collection of NBLAST-related functions.
Depends: R (>= 2.15.1), rgl, methods, nat (>= 1.5.12)
Imports: nabor, dendroextras, plyr, spam
Suggests: bigmemory, ff, testthat
License: GPL-3
LazyData: yes
Packaged: 2014-09-19 11:20:01 UTC; jefferis
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 14:57:33

More information about nat.nblast at CRAN
Permanent link

New package multipleNCC with initial version 1.0
Package: multipleNCC
Type: Package
Title: Weighted Cox-regression for nested case-control data
Version: 1.0
Date: 2014-08-28
Author: Nathalie C. Stoer, Sven Ove Samuelsen
Maintainer: Nathalie C. Stoer
Description: This package fit Cox proportional hazard models with a weighted partial likelihood. It handles one or multiple endpoints, additional matching and makes it possible to reuse controls for other endpoints.
Depends: survival, gam
License: GPL-2
Packaged: 2014-09-19 12:44:29 UTC; Nathalie
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 15:06:25

More information about multipleNCC at CRAN
Permanent link

New package confidence with initial version 1.0-0
Package: confidence
Type: Package
Title: Confidence Estimation of Environmental State Classifications
Description: Functions for estimating and reporting multiyear averages and corresponding confidence intervals and distributions. A potential use case is reporting the chemical and ecological status of surface waters according to the European Water Framework Directive.
Version: 1.0-0
Date: 2014-09-18
Authors@R: c(person(given = c("Willem", "M.", "G.", "M."), family = "van Loon", email = "willem.van.loon@rws.nl", role = c("aut", "cph")), person(given = c("Dennis", "J.", "J."), family = "Walvoort", email = "dennis.Walvoort@wur.nl", role = c("aut", "cre")))
Depends: R (>= 3.0.0), tcltk
Imports: knitr, markdown, plyr, xtable, ggplot2
Suggests: testthat
VignetteBuilder: knitr
License: GPL (>= 3)
Packaged: 2014-09-19 12:09:37 UTC; dennis
Author: Willem M. G. M. van Loon [aut, cph], Dennis J. J. Walvoort [aut, cre]
Maintainer: Dennis J. J. Walvoort
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 14:57:31

More information about confidence at CRAN
Permanent link

Package lancet.iraqmortality (with last version 0.2-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2007-06-21 0.2-0

Permanent link
Package ppstat (with last version 0.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-07 0.9
2012-08-20 0.8.1

Permanent link
Package maticce (with last version 1.0-3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-11 1.0-3

Permanent link
Package qfa (with last version 0.0-10) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-06-21 0.0-10

Permanent link
Package oc (with last version 0.93) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-24 0.93

Permanent link
Package processdata (with last version 0.8.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-02 0.8.2
2012-05-11 0.8.1
2012-03-02 0.8
2010-10-09 0.7

Permanent link
Package mfp (with last version 1.4.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-11-29 1.4.9
2010-09-21 1.4.8
2008-08-31 1.4.6
2008-06-26 1.4.5
2008-04-07 1.4.4
2007-12-12 1.4.3
2007-11-13 1.4.1
2007-11-13 1.4.2
2007-05-18 1.4.0

Permanent link
Package latticist (with last version 0.9-44) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-01-04 0.9-44
2010-06-30 0.9-43
2008-11-14 0.9-42
2008-11-07 0.9-41
2008-11-04 0.9-40

Permanent link
Package likert (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-25 1.1

Permanent link
Package iwtp (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-02 1.0.0

Permanent link
Package RUnit updated to version 0.4.27 with previous version 0.4.26 dated 2010-09-16

Title: R Unit test framework
Description: R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools
Author: Matthias Burger , Klaus Juenemann , Thomas Koenig
Maintainer: ORPHANED

Diff between RUnit versions 0.4.26 dated 2010-09-16 and 0.4.27 dated 2014-09-19

 RUnit-0.4.26/RUnit/.cvsignore          |only
 RUnit-0.4.26/RUnit/inst/doc/Makefile   |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.dvi  |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.out  |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.ps   |only
 RUnit-0.4.26/RUnit/inst/doc/RUnit.tex  |only
 RUnit-0.4.27/RUnit/DESCRIPTION         |   16 ++++++-----
 RUnit-0.4.27/RUnit/MD5                 |only
 RUnit-0.4.27/RUnit/NAMESPACE           |    4 +-
 RUnit-0.4.27/RUnit/R/00Init.r          |   10 +-----
 RUnit-0.4.27/RUnit/R/runit.r           |   48 ++++++++++++++++-----------------
 RUnit-0.4.27/RUnit/build               |only
 RUnit-0.4.27/RUnit/inst/doc/RUnit.R    |only
 RUnit-0.4.27/RUnit/inst/doc/RUnit.pdf  |binary
 RUnit-0.4.27/RUnit/man/textProtocol.Rd |    4 +-
 RUnit-0.4.27/RUnit/vignettes           |only
 16 files changed, 40 insertions(+), 42 deletions(-)

More information about RUnit at CRAN
Permanent link

Package pcaPP updated to version 1.9-50 with previous version 1.9-49 dated 2013-03-22

Title: Robust PCA by Projection Pursuit
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: ORPHANED

Diff between pcaPP versions 1.9-49 dated 2013-03-22 and 1.9-50 dated 2014-09-19

 pcaPP-1.9-49/pcaPP/inst/doc/load.package.name.R |only
 pcaPP-1.9-49/pcaPP/inst/doc/matlab.example.txt  |only
 pcaPP-1.9-49/pcaPP/matlab                       |only
 pcaPP-1.9-50/pcaPP/DESCRIPTION                  |   16 +++++----
 pcaPP-1.9-50/pcaPP/MD5                          |   41 +++++-------------------
 pcaPP-1.9-50/pcaPP/NAMESPACE                    |    8 ++++
 pcaPP-1.9-50/pcaPP/build                        |only
 pcaPP-1.9-50/pcaPP/inst/doc/matlab.R            |only
 pcaPP-1.9-50/pcaPP/inst/doc/matlab.pdf          |binary
 pcaPP-1.9-50/pcaPP/man/PCdiagplot.Rd            |    3 +
 pcaPP-1.9-50/pcaPP/man/l1median_NLM.Rd          |   19 +++++++----
 pcaPP-1.9-50/pcaPP/vignettes                    |only
 12 files changed, 40 insertions(+), 47 deletions(-)

More information about pcaPP at CRAN
Permanent link

Package beanplot updated to version 1.2 with previous version 1.1 dated 2008-11-06

Title: Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
Description: Plots univariate comparison graphs, an alternative to boxplot/stripchart/violin plot.
Author: Peter Kampstra
Maintainer: Peter Kampstra

Diff between beanplot versions 1.1 dated 2008-11-06 and 1.2 dated 2014-09-19

 beanplot-1.1/beanplot/inst/doc/beanplot.bib   |only
 beanplot-1.2/beanplot/DESCRIPTION             |   27 +++++++++++++++-----------
 beanplot-1.2/beanplot/MD5                     |only
 beanplot-1.2/beanplot/R/beanplot.R            |   18 ++++++++++-------
 beanplot-1.2/beanplot/R/beanplotbeanlines.R   |    3 ++
 beanplot-1.2/beanplot/R/fixcolorvector.R      |    4 +--
 beanplot-1.2/beanplot/R/seemslog.R            |   17 ++++++++++------
 beanplot-1.2/beanplot/build                   |only
 beanplot-1.2/beanplot/inst/doc/beanplot.R     |only
 beanplot-1.2/beanplot/inst/doc/beanplot.pdf   |binary
 beanplot-1.2/beanplot/man/beanplot-package.Rd |    6 ++---
 beanplot-1.2/beanplot/man/beanplot.Rd         |   19 ++++++++++++------
 beanplot-1.2/beanplot/vignettes               |only
 13 files changed, 59 insertions(+), 35 deletions(-)

More information about beanplot at CRAN
Permanent link

Package basicspace (with last version 0.07) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-02 0.07
2012-08-02 0.06
2012-01-17 0.05
2011-07-23 0.03
2011-01-26 0.02

Permanent link
Package gWidgetsWWW (with last version 0.0-23) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-09 0.0-23
2011-01-12 0.0-22
2010-09-02 0.0-21
2010-06-19 0.0-19
2010-06-18 0.0-18
2010-06-17 0.0-17
2009-12-10 0.0-14
2009-11-13 0.0-13
2009-11-01 0.0-12
2009-08-23 0.0-11
2009-08-16 0.0-9
2009-08-08 0.0-8
2009-03-03 0.0-6
2009-02-10 0.0-5
2008-08-06 0.0-3
2008-07-28 0.0-2
2008-07-20 0.0-1

Permanent link
Package acer (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-08-22 0.1.2
2011-12-16 0.1

Permanent link
Package cwhmisc (with last version 4.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-03 4.0

Permanent link
Package anoint (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-07 1.3
2013-01-10 1.2
2012-04-24 1.0

Permanent link
Package cacher (with last version 1.1-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-21 1.1-2
2010-08-27 1.1-1
2009-06-24 1.1
2008-12-21 1.0
2008-04-29 0.2-1
2008-04-04 0.1-2
2007-11-20 0.1-1

Permanent link
Package cusp (with last version 2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2009-11-06 2.2

Permanent link
Package Rknots (with last version 1.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-02-27 1.2.1
2011-12-27 1.2
2011-09-06 1.1
2011-07-04 1.0

Permanent link
Package StateTrace (with last version 1.0-4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-04 1.0-4
2012-01-03 1.0-2
2011-11-30 1.0-1
2011-11-29 1.0

Permanent link
Package anominate (with last version 0.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-04-27 0.4
2014-04-13 0.3

Permanent link
Package sdmvspecies updated to version 0.3.1 with previous version 0.3 dated 2014-07-06

Title: Create virtual species for species distribution modelling
Description: This package includes several methods to create virtual species distribution map. Those maps can be used for species distribution modelling (SDM) study. SDM use environmental data for sites of occurrence of a species to predict all the sites where the environmental conditions are suitable for the species to persist, and may be expected to occur.
Author: Xiaoquan Kong, Renyan Duan, Minyi Huang
Maintainer: Howl Anderson

Diff between sdmvspecies versions 0.3 dated 2014-07-06 and 0.3.1 dated 2014-09-19

 DESCRIPTION                         |    6 +++---
 MD5                                 |   20 ++++++++++----------
 R/auto_PCA.R                        |   18 +++++-------------
 R/rescale.R                         |   14 ++++++++++----
 inst/doc/sdmvspecies.R              |   12 ++++++------
 inst/doc/sdmvspecies.Rnw            |   16 ++++++++--------
 inst/doc/sdmvspecies.pdf            |binary
 inst/tests/testthat/test_auto_PCA.R |    4 ++--
 inst/tests/testthat/test_rescale.R  |    2 +-
 man/autoPCA.Rd                      |    4 ++--
 vignettes/sdmvspecies.Rnw           |   16 ++++++++--------
 11 files changed, 55 insertions(+), 57 deletions(-)

More information about sdmvspecies at CRAN
Permanent link

Package Rhpc updated to version 0.14-261 with previous version 0.14-256 dated 2014-09-12

Title: An R package for High-Performance Computing
Description: Rhpc_lapply, Rhpc_lapplyLB and Rhpc_worker_call using MPI provides better HPC environment on R(works fast on HPC). and this package supports long vector, can deal with slightly big data.
Author: Junji NAKANO and Eiji NAKAMA
Maintainer: Ei-ji Nakama

Diff between Rhpc versions 0.14-256 dated 2014-09-12 and 0.14-261 dated 2014-09-19

 ChangeLog               |    6 +++++
 DESCRIPTION             |    8 +++---
 MD5                     |   14 ++++++------
 configure               |   32 ++++++++++-----------------
 configure.ac            |   32 +++++++++++----------------
 src/RhpcMPI.c           |   55 ++++++++++++++++++++++++++++++++++--------------
 src/common/Rhpc.h       |    2 -
 src/worker/RhpcWorker.c |   41 +++++++++++++++++++++++------------
 8 files changed, 110 insertions(+), 80 deletions(-)

More information about Rhpc at CRAN
Permanent link

Package RcmdrPlugin.NMBU updated to version 1.7.5 with previous version 1.7.4 dated 2014-09-16

Title: R Commander Plug-In for Statistics at NMBU
Description: This package provides an Rcmdr "plug-in" extending some functions of linear models and providing an interface to PLS, LDA and QDA.
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland

Diff between RcmdrPlugin.NMBU versions 1.7.4 dated 2014-09-16 and 1.7.5 dated 2014-09-19

 DESCRIPTION        |    8 ++++----
 MD5                |    4 ++--
 R/NMBU.Utilities.R |    2 +-
 3 files changed, 7 insertions(+), 7 deletions(-)

More information about RcmdrPlugin.NMBU at CRAN
Permanent link

New package iki.dataclim with initial version 1.0
Package: iki.dataclim
Type: Package
Title: Consistency, Homogeneity and Summary Statistics of Climatological Data
Version: 1.0
Date: 2014-07-18
Author: Boris Orlowsky
Maintainer: Boris Orlowsky
URL: www.climate-babel.org
Description: The package offers an S4 infrastructure to store climatological station data of various temporal aggregation scales. In-built quality control and homogeneity tests follow the methodology from the European Climate Assessment & Dataset project. Wrappers for climate indices defined by the Expert Team on Climate Change Detection and Indices (ETCCDI), a quick summary of important climate statistics and climate diagram plots provide a fast overview of climatological characteristics of the station.
License: GPL-3
Copyright: Boris Orlowsky
Depends: R (>= 3.0.0)
Imports: methods, zoo, lubridate, climdex.pcic (>= 1.1-1), PCICt
Packaged: 2014-09-18 20:02:19 UTC; oboris
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-09-19 10:33:43

More information about iki.dataclim at CRAN
Permanent link

Package comclim updated to version 0.9.4 with previous version 0.9.2 dated 2014-03-10

Title: Community climate statistics.
Description: Computes community climate statistics for volume and mismatch using species' climate niches either unscaled or scaled relative to a regional species pool. These statistics can be used to describe biogeographic patterns and infer community assembly processes. Includes a vignette outlining usage.
Author: Benjamin Blonder
Maintainer: Benjamin Blonder

Diff between comclim versions 0.9.2 dated 2014-03-10 and 0.9.4 dated 2014-09-19

 DESCRIPTION                            |   10 +--
 MD5                                    |   18 +++---
 R/comclim.R                            |   87 +++++++++++++++++----------------
 inst/doc/comclim.pdf                   |binary
 man/CommunityClimateInput-class.Rd     |   10 +--
 man/climatestatistics.Rd               |   12 ++--
 man/comclim-package.Rd                 |    8 +--
 man/communityclimate.Rd                |   31 ++++++-----
 man/inputcommunitydata.Rd              |   10 +--
 man/plot.CommunityClimateStatistics.Rd |   17 +++---
 10 files changed, 106 insertions(+), 97 deletions(-)

More information about comclim at CRAN
Permanent link

Package PamGeneMixed (with last version 1.03) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-04 1.03
2012-12-18 1.02

Permanent link
Package MiscPsycho (with last version 1.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-04-21 1.6
2009-11-19 1.5
2009-03-10 1.4
2008-10-02 1.3
2008-03-03 1.2
2008-01-24 1.1
2007-05-13 1.0

Permanent link
Package Mangrove (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-08 1.1
2011-10-26 1.0

Permanent link
Package Rearrangement (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-09-12 1.0

Permanent link
Package RcmdrPlugin.MA (with last version 0.0-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-03-23 0.0-1

Permanent link
Package MLPAstats (with last version 0.5-9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-11 0.5-9
2011-01-31 0.5-7

Permanent link
Package RBerkeley (with last version 0.7-4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-15 0.7-4
2009-10-15 0.7-1
2009-08-13 0.7-0

Permanent link
Package Guerry (with last version 1.5-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-24 1.5-0
2010-02-16 1.4
2009-12-03 1.3
2009-10-30 1.1

Permanent link
Package IBrokers (with last version 0.9-10) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-09-29 0.9-10
2012-09-09 0.9-9

Permanent link
Package MFSAS (with last version 1.0-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-07-21 1.0-0

Permanent link
Package Devore6 (with last version 0.6-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-06-01 0.6-0
2006-02-09 0.5-6

Permanent link
Package ARAMIS (with last version 1.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-01-21 1.0.1
2013-01-17 1.0

Permanent link
Package DWD (with last version 0.11) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-05-09 0.11
2011-11-06 0.10

Permanent link
Package CFL (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-08-31 0.1

Permanent link
Package BiomarkeR (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-12-05 1.3
2011-06-17 1.2
2011-06-04 1.1
2011-06-01 1.0

Permanent link
Package Animal (with last version 1.04) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-05-09 1.04

Permanent link
Package BMAmevt (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-09-02 1.0

Permanent link
Package FeaLect (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-11-26 1.3
2010-11-03 1.1

Permanent link
Package EffectStars (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-12-17 1.3
2012-11-22 1.2
2012-05-23 1.1
2012-03-06 1.0

Permanent link
Package AncestryMapper (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-12-01 1.1
2012-10-01 1.0

Permanent link
Package edgeRun updated to version 1.0.9 with previous version 1.0.8 dated 2014-09-18

Title: More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
Description: Extends edgeR functionality by improving on exactTest using an unconditional exact test of negative binomial means.
Author: Emmanuel Dimont
Maintainer: Emmanuel Dimont

Diff between edgeRun versions 1.0.8 dated 2014-09-18 and 1.0.9 dated 2014-09-19

 DESCRIPTION            |    8 ++++----
 MD5                    |    4 ++--
 man/edgeRun-package.Rd |   16 ++++++----------
 3 files changed, 12 insertions(+), 16 deletions(-)

More information about edgeRun at CRAN
Permanent link

New package BEANSP with initial version 1.0
Package: BEANSP
Type: Package
Title: Bayesian Estimate of Age-specific Nest Survival Probabilities
Version: 1.0
Date: 2014-08-09
Author: Chong He, Yiqun Yang, Jing Cao
Maintainer: Yiqun Yang
Description: Computing age specific nest survival rates based on a Bayesian hierarchical model. This package can handle unknown nest age, irregular visiting schedule and nest-specific covariates.
License: GPL-2
Packaged: 2014-09-18 16:01:43 UTC; emily
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-09-19 06:22:07

More information about BEANSP at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.