Title: Beta Regression
Diff between betareg versions 3.0-4 dated 2013-09-16 and 3.0-5 dated 2014-09-24
Description: Beta regression for modeling beta-distributed dependent variables, e.g., rates and proportions.
In addition to maximum likelihood regression (for both mean and precision of a beta-distributed
response), bias-corrected and bias-reduced estimation as well as finite mixture models and
recursive partitioning for beta regressions are provided.
Author: Achim Zeileis [aut, cre],
Francisco Cribari-Neto [aut],
Bettina Gruen [aut],
Ioannis Kosmidis [aut],
Alexandre B. Simas [ctb] (earlier version by),
Andrea V. Rocha [ctb] (earlier version by)
Maintainer: Achim Zeileis
DESCRIPTION | 14 +++++------
MD5 | 45 ++++++++++++++++++------------------
NAMESPACE | 1
NEWS | 8 ++++++
R/betamix.R | 6 ++--
R/betamixfix.R | 4 +--
R/betatree.R | 4 +--
build |only
data/CarTask.rda |binary
data/FoodExpenditure.rda |binary
data/GasolineYield.rda |binary
data/ImpreciseTask.rda |binary
data/MockJurors.rda |binary
data/ReadingSkills.rda |binary
data/StressAnxiety.rda |binary
data/WeatherTask.rda |binary
inst/doc/betareg-ext.pdf |binary
inst/doc/betareg.pdf |binary
tests/Examples/betareg-Ex.Rout.save | 28 +++++++++++-----------
tests/betamix.Rout.save | 28 +++++++---------------
tests/betatree.Rout.save | 24 ++++++-------------
tests/bias.Rout.save | 11 ++++----
vignettes/betareg-ext.Rout.save | 29 +++++++----------------
vignettes/betareg.Rout.save | 22 +++++++++--------
24 files changed, 104 insertions(+), 120 deletions(-)
Title: Generate high-resolution Venn and Euler plots
Diff between VennDiagram versions 1.6.8 dated 2014-09-11 and 1.6.9 dated 2014-09-24
Description: A set of functions to generate high-resolution Venn and Euler plots. Includes handling for several special cases, including two-case scaling, and extensive customization of plot shape and structure.
Author: Hanbo Chen
Maintainer: Paul Boutros
DESCRIPTION | 6 +++---
MD5 | 6 +++---
NEWS | 10 ++++++++++
R/draw.pairwise.venn.R | 4 ++--
4 files changed, 18 insertions(+), 8 deletions(-)
Title: Analysis of Spatially Distributed Data
Diff between RSurvey versions 0.8-0 dated 2014-01-06 and 0.8-2 dated 2014-09-24
Description: This package is a processing program for spatially
distributed data. It features graphing tools, query building, and
polygon clipping. A graphical user interface is provided.
Author: Jason C. Fisher
Maintainer: Jason C. Fisher
RSurvey-0.8-0/RSurvey/R/ImportPackageData.R |only
RSurvey-0.8-0/RSurvey/R/ImportSpreadsheetData.R |only
RSurvey-0.8-0/RSurvey/R/ImportTextData.R |only
RSurvey-0.8-0/RSurvey/man/ImportPackageData.Rd |only
RSurvey-0.8-0/RSurvey/man/ImportSpreadsheetData.Rd |only
RSurvey-0.8-0/RSurvey/man/ImportTextData.Rd |only
RSurvey-0.8-2/RSurvey/DESCRIPTION | 10
RSurvey-0.8-2/RSurvey/MD5 | 158 +++---
RSurvey-0.8-2/RSurvey/NAMESPACE | 8
RSurvey-0.8-2/RSurvey/NEWS | 28 +
RSurvey-0.8-2/RSurvey/R/AddAxis.R | 2
RSurvey-0.8-2/RSurvey/R/Autocrop.R | 6
RSurvey-0.8-2/RSurvey/R/AutocropRegion.R | 6
RSurvey-0.8-2/RSurvey/R/BuildHistogram.R | 37 -
RSurvey-0.8-2/RSurvey/R/BuildPackage.R | 36 +
RSurvey-0.8-2/RSurvey/R/ChooseColor.R | 10
RSurvey-0.8-2/RSurvey/R/ChoosePch.R | 6
RSurvey-0.8-2/RSurvey/R/CutoutPolygon.R | 4
RSurvey-0.8-2/RSurvey/R/EditData.R | 500 +++++++++++----------
RSurvey-0.8-2/RSurvey/R/EditFunction.R | 22
RSurvey-0.8-2/RSurvey/R/EditText.R | 2
RSurvey-0.8-2/RSurvey/R/EvalFunction.R | 2
RSurvey-0.8-2/RSurvey/R/ExportData.R | 174 +++----
RSurvey-0.8-2/RSurvey/R/Format.R | 2
RSurvey-0.8-2/RSurvey/R/FormatDateTime.R | 20
RSurvey-0.8-2/RSurvey/R/GetFile.R | 10
RSurvey-0.8-2/RSurvey/R/ImportPackage.R |only
RSurvey-0.8-2/RSurvey/R/ImportSpreadsheet.R |only
RSurvey-0.8-2/RSurvey/R/ImportText.R |only
RSurvey-0.8-2/RSurvey/R/LoadPackages.R | 7
RSurvey-0.8-2/RSurvey/R/ManagePolygons.R | 18
RSurvey-0.8-2/RSurvey/R/ManageVariables.R | 124 +----
RSurvey-0.8-2/RSurvey/R/OpenRSurvey.R | 224 +++++----
RSurvey-0.8-2/RSurvey/R/POSIXct2Character.R | 18
RSurvey-0.8-2/RSurvey/R/Plot3d.R | 14
RSurvey-0.8-2/RSurvey/R/ProgressBar.R |only
RSurvey-0.8-2/RSurvey/R/Rename.R | 2
RSurvey-0.8-2/RSurvey/R/Search.R | 6
RSurvey-0.8-2/RSurvey/R/SetAxesLimits.R | 2
RSurvey-0.8-2/RSurvey/R/SetConfiguration.R | 2
RSurvey-0.8-2/RSurvey/R/SetInterpolation.R | 2
RSurvey-0.8-2/RSurvey/R/SetPolygonLimits.R | 2
RSurvey-0.8-2/RSurvey/R/SetSortOrder.R | 8
RSurvey-0.8-2/RSurvey/README.md | 61 +-
RSurvey-0.8-2/RSurvey/data/ex.data.rda |binary
RSurvey-0.8-2/RSurvey/data/ex.project.RData |binary
RSurvey-0.8-2/RSurvey/man/AddAxis.Rd | 9
RSurvey-0.8-2/RSurvey/man/Autocrop.Rd | 16
RSurvey-0.8-2/RSurvey/man/AutocropRegion.Rd | 16
RSurvey-0.8-2/RSurvey/man/BuildHistogram.Rd | 21
RSurvey-0.8-2/RSurvey/man/BuildPackage.Rd | 13
RSurvey-0.8-2/RSurvey/man/CheckEntry.Rd | 14
RSurvey-0.8-2/RSurvey/man/ChooseColor.Rd | 16
RSurvey-0.8-2/RSurvey/man/ChoosePch.Rd | 20
RSurvey-0.8-2/RSurvey/man/CutoutPolygon.Rd | 11
RSurvey-0.8-2/RSurvey/man/Data.Rd | 10
RSurvey-0.8-2/RSurvey/man/EditData.Rd | 24 -
RSurvey-0.8-2/RSurvey/man/EditFunction.Rd | 21
RSurvey-0.8-2/RSurvey/man/EditText.Rd | 12
RSurvey-0.8-2/RSurvey/man/EvalFunction.Rd | 18
RSurvey-0.8-2/RSurvey/man/ExportData.Rd | 18
RSurvey-0.8-2/RSurvey/man/Format.Rd | 24 -
RSurvey-0.8-2/RSurvey/man/FormatDateTime.Rd | 14
RSurvey-0.8-2/RSurvey/man/GetBitmapImage.Rd | 30 -
RSurvey-0.8-2/RSurvey/man/GetFile.Rd | 8
RSurvey-0.8-2/RSurvey/man/ImportPackage.Rd |only
RSurvey-0.8-2/RSurvey/man/ImportSpreadsheet.Rd |only
RSurvey-0.8-2/RSurvey/man/ImportText.Rd |only
RSurvey-0.8-2/RSurvey/man/LoadPackages.Rd | 8
RSurvey-0.8-2/RSurvey/man/ManagePolygons.Rd | 4
RSurvey-0.8-2/RSurvey/man/ManageVariables.Rd | 23
RSurvey-0.8-2/RSurvey/man/OpenRSurvey.Rd | 8
RSurvey-0.8-2/RSurvey/man/POSIXct2Character.Rd | 22
RSurvey-0.8-2/RSurvey/man/Plot3d.Rd | 11
RSurvey-0.8-2/RSurvey/man/ProcessData.Rd | 14
RSurvey-0.8-2/RSurvey/man/ProgressBar.Rd |only
RSurvey-0.8-2/RSurvey/man/RSurvey-package.Rd | 8
RSurvey-0.8-2/RSurvey/man/Rename.Rd | 15
RSurvey-0.8-2/RSurvey/man/RestoreSession.Rd | 12
RSurvey-0.8-2/RSurvey/man/Search.Rd | 16
RSurvey-0.8-2/RSurvey/man/SetAxesLimits.Rd | 12
RSurvey-0.8-2/RSurvey/man/SetConfiguration.Rd | 16
RSurvey-0.8-2/RSurvey/man/SetInterpolation.Rd | 12
RSurvey-0.8-2/RSurvey/man/SetPolygonLimits.Rd | 12
RSurvey-0.8-2/RSurvey/man/SetSortOrder.Rd | 8
RSurvey-0.8-2/RSurvey/man/ex.data.Rd | 14
RSurvey-0.8-2/RSurvey/man/ex.project.Rd | 17
87 files changed, 989 insertions(+), 1091 deletions(-)
Title: Shape constrained additive models
Diff between scam versions 1.1-7 dated 2014-05-27 and 1.1-8 dated 2014-09-24
Description: Routines for generalized additive modelling under shape
constraints on the component functions of the linear predictor.
Models can contain multiple shape constrained (univariate
and/or bivariate) and unconstrained terms. The routines of
mgcv(gam) package are used for setting up the model matrix,
printing and plotting the results. Penalized likelihood
maximization based on Newton-Raphson method is used to fit a
model with multiple smoothing parameter selection by GCV or
UBRE/AIC.
Author: Natalya Pya
Maintainer: Natalya Pya
ChangeLog | 11 ++++
DESCRIPTION | 14 ++---
MD5 | 68 ++++++++++++++---------------
NAMESPACE | 2
R/bivar.smooth.const.R | 12 ++---
R/scam.r | 11 ++--
R/summary.scam.R | 2
R/uni.smooth.const.R | 16 +++---
man/Predict.matrix.mpi.smooth.Rd | 2
man/bfgs_gcv.ubre.Rd | 2
man/derivative.scam.Rd | 5 --
man/gcv.ubre_grad.Rd | 2
man/marginal.matrices.tesmi1.ps.Rd | 2
man/marginal.matrices.tesmi2.ps.Rd | 2
man/plot.scam.Rd | 2
man/predict.scam.Rd | 2
man/scam-package.Rd | 10 ++--
man/scam.Rd | 5 --
man/scam.fit.Rd | 2
man/shape.constrained.smooth.terms.Rd | 2
man/smooth.construct.cv.smooth.spec.rd | 2
man/smooth.construct.cx.smooth.spec.Rd | 2
man/smooth.construct.mdcv.smooth.spec.Rd | 2
man/smooth.construct.mdcx.smooth.spec.Rd | 2
man/smooth.construct.micv.smooth.spec.Rd | 2
man/smooth.construct.micx.smooth.spec.Rd | 2
man/smooth.construct.mpd.smooth.spec.Rd | 2
man/smooth.construct.mpi.smooth.spec.Rd | 2
man/smooth.construct.tedmd.smooth.spec.Rd | 2
man/smooth.construct.tedmi.smooth.spec.Rd | 2
man/smooth.construct.tesmd1.smooth.spec.Rd | 2
man/smooth.construct.tesmd2.smooth.spec.Rd | 2
man/smooth.construct.tesmi1.smooth.spec.Rd | 2
man/smooth.construct.tesmi2.smooth.spec.Rd | 2
man/summary.scam.Rd | 2
35 files changed, 108 insertions(+), 96 deletions(-)
Title: Mathematical morphology in any number of dimensions
Diff between mmand versions 1.0.0 dated 2014-06-18 and 1.1.0 dated 2014-09-24
Description: This package provides tools for performing mathematical morphology operations, such as erosion and dilation, on data of arbitrary dimensionality. It can also be used for resampling, filtering, smoothing and other image processing-style operations.
Author: Jon Clayden
Maintainer: Jon Clayden
mmand-1.0.0/mmand/inst/images/lena-small.png |only
mmand-1.0.0/mmand/inst/images/lena.png |only
mmand-1.0.0/mmand/tests/testthat/lena_closed.rds |only
mmand-1.0.0/mmand/tests/testthat/lena_dilated.rds |only
mmand-1.0.0/mmand/tests/testthat/lena_eroded.rds |only
mmand-1.0.0/mmand/tests/testthat/lena_mean_filtered.rds |only
mmand-1.0.0/mmand/tests/testthat/lena_median_filtered.rds |only
mmand-1.0.0/mmand/tests/testthat/lena_opened.rds |only
mmand-1.0.0/mmand/tests/testthat/matches_file.R |only
mmand-1.1.0/mmand/DESCRIPTION | 10
mmand-1.1.0/mmand/MD5 | 37 -
mmand-1.1.0/mmand/NEWS | 38 +
mmand-1.1.0/mmand/README.md | 307 +++++++++++++-
mmand-1.1.0/mmand/inst/images/fan-small.png |only
mmand-1.1.0/mmand/inst/images/fan.png |only
mmand-1.1.0/mmand/src/Morpher.cpp | 20
mmand-1.1.0/mmand/tests/testthat/2d_smooth_large.rds |binary
mmand-1.1.0/mmand/tests/testthat/2d_smooth_small.rds |binary
mmand-1.1.0/mmand/tests/testthat/fan_closed.rds |only
mmand-1.1.0/mmand/tests/testthat/fan_dilated.rds |only
mmand-1.1.0/mmand/tests/testthat/fan_eroded.rds |only
mmand-1.1.0/mmand/tests/testthat/fan_mean_filtered.rds |only
mmand-1.1.0/mmand/tests/testthat/fan_median_filtered.rds |only
mmand-1.1.0/mmand/tests/testthat/fan_opened.rds |only
mmand-1.1.0/mmand/tests/testthat/test-05-kernels.R | 24 -
mmand-1.1.0/mmand/tests/testthat/test-10-morph.R | 22 -
mmand-1.1.0/mmand/tests/testthat/test-15-automata.R | 8
mmand-1.1.0/mmand/tests/testthat/test-20-resample.R | 2
28 files changed, 397 insertions(+), 71 deletions(-)
Title: Hydrological Data Discovery Tools
Diff between hddtools versions 0.1.1 dated 2014-08-13 and 0.2.2 dated 2014-09-24
Description: Facilitates discovery of hydrological data, non-programmatic
access to catalogues and databases.
Author: Claudia Vitolo
Maintainer: Claudia Vitolo
DESCRIPTION | 10 ++++++----
MD5 | 20 ++++++++++++--------
NAMESPACE | 1 +
R/TRMM.R |only
inst/test.txt |only
inst/trmm.sh |only
man/Data60UKCatalogue.Rd | 2 +-
man/Data60UKDailyTS.Rd | 2 +-
man/GRDCCatalogue.Rd | 2 +-
man/GRDCMonthlyTS.Rd | 2 +-
man/Hydrological-Data-Discovery-Tools.Rd | 2 +-
man/KGClimateClass.Rd | 2 +-
man/TRMM.Rd |only
13 files changed, 25 insertions(+), 18 deletions(-)
Title: Flexible Mixture Modeling
Diff between flexmix versions 2.3-11 dated 2013-09-28 and 2.3-12 dated 2014-09-24
Description: FlexMix implements a general framework for finite
mixtures of regression models using the EM algorithm.
FlexMix provides the E-step and all data handling, while the M-step can be
supplied by the user to easily define new models. Existing drivers
implement mixtures of standard linear models, generalized linear
models and model-based clustering.
Author: Bettina Gruen [aut, cre],
Friedrich Leisch [aut],
Deepayan Sarkar [ctb]
Maintainer: Bettina Gruen
DESCRIPTION | 18 +++----
MD5 | 46 +++++++++----------
R/condlogit.R | 2
R/flexmix.R | 6 +-
R/flexmixFix.R | 23 ++++++---
R/flxdist.R | 4 -
R/glmFix.R | 5 +-
R/lmmc.R | 92 ++++++++++++--------------------------
R/mgcv.R | 1
build |only
data/Mehta.RData |binary
inst/NEWS.Rd | 9 +++
inst/doc/bootstrapping.R | 39 +++++++---------
inst/doc/bootstrapping.Rnw | 31 ++++++------
inst/doc/bootstrapping.pdf |binary
inst/doc/flexmix-intro.pdf |binary
inst/doc/mixture-regressions.Rnw | 2
inst/doc/mixture-regressions.pdf |binary
inst/doc/regression-examples.R | 2
inst/doc/regression-examples.Rnw | 2
inst/doc/regression-examples.pdf |binary
tests/A315-Zhang1-Dat.txt |only
vignettes/bootstrapping.Rnw | 31 ++++++------
vignettes/mixture-regressions.Rnw | 2
vignettes/regression-examples.Rnw | 2
25 files changed, 151 insertions(+), 166 deletions(-)
Title: Methods to analyse ring re-encounter data
Diff between birdring versions 1.1 dated 2014-06-10 and 1.2 dated 2014-09-24
Description: The package contains methods and functions to analyse re-encounter data of birds marked by metal rings. For a tutorial, go to http://www.tandfonline.com/doi/full/10.1080/03078698.2014.933053.
Author: Fraenzi Korner-Nievergelt, Rob Robinson
Maintainer: Fraenzi Korner-Nievergelt
DESCRIPTION | 8 ++++----
MD5 | 15 ++++++++-------
R/draw.map.r | 1 +
R/place2name.R | 4 +++-
R/read.euring2000.r | 10 ++++++----
R/read.euring2000plus.r | 10 ++++++----
R/sysdata.rda |only
data/schemes.rda |binary
man/birdring-package.Rd | 4 ++--
9 files changed, 30 insertions(+), 22 deletions(-)
Title: Batch computing with R.
Diff between BatchJobs versions 1.3 dated 2014-07-09 and 1.4 dated 2014-09-24
Description: Provides Map, Reduce and Filter variants to generate jobs on batch
computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine.
Multicore and SSH systems are also supported. For further details see the
project web page.
Author: Bernd Bischl
Maintainer: Bernd Bischl
DESCRIPTION | 10 -
MD5 | 277 +++++++++++++++---------------
NAMESPACE | 12 +
NEWS | 16 +
R/Exports.R | 76 +++++++-
R/Packages.R |only
R/Registry.R | 22 +-
R/Resources.R | 2
R/addJob.R | 11 +
R/applyJobFunction.R | 1
R/batchApply.R | 1
R/batchExpandGrid.R | 16 +
R/batchMap.R | 5
R/batchMapQuick.R | 3
R/batchReduce.R | 1
R/batchReduceResults.R | 1
R/callFunctionOnSSHWorkers.R | 1
R/checkIdValid.R | 6
R/clusterFunctions.R | 3
R/clusterFunctionsHelpers.R | 4
R/clusterFunctionsInteractive.R | 2
R/clusterFunctionsLSF.R | 1
R/clusterFunctionsLocal.R | 2
R/clusterFunctionsMulticore.R | 5
R/clusterFunctionsSGE.R | 5
R/clusterFunctionsSLURM.R | 1
R/clusterFunctionsSSH.R | 3
R/clusterFunctionsTorque.R | 1
R/conf.R | 7
R/database.R | 25 +-
R/debugMulticore.R | 2
R/debugSSH.R | 7
R/doJob.R | 12 -
R/filenames.R | 17 -
R/filterResults.R | 1
R/getErrorMessages.R | 2
R/getJobInfo.R | 26 +-
R/getJobParamDf.R |only
R/getLogFiles.R | 1
R/getSSHWorkersInfo.R | 1
R/grepLogs.R | 3
R/helpers.R | 22 --
R/installPackagesOnSSHWorkers.R | 1
R/killJobs.R | 2
R/reduceResults.R | 3
R/resetJobs.R | 2
R/sanitizePath.R |only
R/setJobFunction.R | 2
R/showClusterStatus.R | 1
R/showLog.R | 3
R/showStatus.R | 1
R/sourceRegistryFiles.R | 114 +++++++++++-
R/sweepRegistry.R | 8
R/testJob.R | 3
R/updateRegistry.R | 9
R/waitForJobs.R | 1
R/writeRscripts.R | 1
R/zzz.R | 19 ++
man/BatchJobs.Rd | 20 ++
man/addRegistryPackages.Rd |only
man/addRegistrySourceDirs.Rd |only
man/addRegistrySourceFiles.Rd |only
man/applyJobFunction.Rd | 6
man/batchExpandGrid.Rd | 10 -
man/batchExport.Rd |only
man/batchMap.Rd | 2
man/batchMapQuick.Rd | 4
man/batchMapResults.Rd | 2
man/batchReduce.Rd | 2
man/batchReduceResults.Rd | 2
man/batchUnexport.Rd |only
man/callFunctionOnSSHWorkers.Rd | 5
man/cfBrewTemplate.Rd | 5
man/cfHandleUnknownSubmitError.Rd | 5
man/cfKillBatchJob.Rd | 5
man/cfReadBrewTemplate.Rd | 5
man/configuration.Rd | 6
man/copyRequiredJobFiles.Rd | 2
man/dbCreateJobDefTable.Rd | 2
man/dbGetJobs.Rd | 2
man/debugMulticore.Rd | 10 -
man/debugSSH.Rd | 13 +
man/filterResults.Rd | 2
man/findJobs.Rd | 2
man/findState.Rd | 2
man/getConfig.Rd | 6
man/getErrorMessages.Rd | 9
man/getJob.Rd | 2
man/getJobIds.Rd | 2
man/getJobInfo.Rd | 20 +-
man/getJobNr.Rd | 2
man/getJobParamDf.Rd |only
man/getJobResources.Rd | 2
man/getJobs.Rd | 2
man/getLogFiles.Rd | 10 -
man/getResources.Rd | 2
man/getSSHWorkersInfo.Rd | 5
man/grepLogs.Rd | 9
man/installPackagesOnSSHWorkers.Rd | 5
man/killJobs.Rd | 13 +
man/loadConfig.Rd | 6
man/loadExports.Rd | 17 +
man/loadRegistry.Rd | 2
man/loadResult.Rd | 2
man/loadResults.Rd | 2
man/makeClusterFunctions.Rd | 11 -
man/makeClusterFunctionsInteractive.Rd | 16 +
man/makeClusterFunctionsLSF.Rd | 13 +
man/makeClusterFunctionsLocal.Rd | 16 +
man/makeClusterFunctionsMulticore.Rd | 13 +
man/makeClusterFunctionsSGE.Rd | 13 +
man/makeClusterFunctionsSLURM.Rd | 13 +
man/makeClusterFunctionsSSH.Rd | 14 +
man/makeClusterFunctionsTorque.Rd | 13 +
man/makeJob.Rd | 2
man/makeRegistry.Rd | 2
man/makeSSHWorker.Rd | 2
man/makeSubmitJobResult.Rd | 2
man/reduceResults.Rd | 14 -
man/removeRegistryPackages.Rd |only
man/removeRegistrySourceDirs.Rd |only
man/removeRegistrySourceFiles.Rd |only
man/resetJobs.Rd | 13 +
man/sanitizePath.Rd |only
man/setConfig.Rd | 6
man/setJobFunction.Rd | 13 +
man/setJobNames.Rd | 2
man/showClusterStatus.Rd | 2
man/showLog.Rd | 12 -
man/showStatus.Rd | 10 -
man/sourceRegistryFiles.Rd | 2
man/submitJobs.Rd | 2
man/sweepRegistry.Rd | 6
man/testJob.Rd | 19 +-
man/updateRegistry.Rd | 2
man/waitForJobs.Rd | 2
tests/run-all.R | 2
tests/testthat/helpers.R | 4
tests/testthat/test_batchMap.R | 33 +--
tests/testthat/test_doJob.R | 3
tests/testthat/test_export.R | 24 ++
tests/testthat/test_getJobInfo.R | 26 ++
tests/testthat/test_getJobParamDf.R |only
tests/testthat/test_makeRegistry.R | 2
tests/testthat/test_packages.R |only
tests/testthat/test_sanitizePath.R |only
tests/testthat/test_sourceRegistryFiles.R | 110 ++++++++---
tests/testthat/test_sweepRegistry.R |only
148 files changed, 1000 insertions(+), 455 deletions(-)
Title: Statistical experiments on batch computing clusters.
Diff between BatchExperiments versions 1.2 dated 2014-07-10 and 1.3 dated 2014-09-24
More information about BatchExperiments at CRAN
Description: Extends the BatchJobs package to run statistical experiments on
batch computing clusters. For further details see the project web page.
Author: Bernd Bischl
Maintainer: Michel Lang
DESCRIPTION | 10 -
MD5 | 98 ++++++------
NAMESPACE | 2
NEWS | 19 +-
R/Algorithm.R | 5
R/Experiment.R | 3
R/ExperimentRegistry.R | 3
R/Problem.R | 5
R/addExperiments.R | 8 -
R/database.R | 5
R/designs.R | 4
R/findExperiments.R | 2
R/generateProblemInstance.R | 2
R/getAlgorithm.R | 8 -
R/getAlgorithmIds.R | 4
R/getIndex.R | 16 +-
R/getJob.R | 5
R/getJobInfo.R | 6
R/getProblem.R | 7
R/getProblemIds.R | 4
R/reduceResultsExperiments.R | 33 ++--
R/reduceResultsExperimentsParallel.R | 62 ++++---
R/removeAlgorithm.R | 5
R/removeExperiments.R | 5
R/removeProblem.R | 5
R/summarizeExperiments.R | 3
man/BatchExperiments.Rd | 2
man/ExperimentJob.Rd | 2
man/addAlgorithm.Rd | 7
man/addExperiments.Rd | 11 +
man/addProblem.Rd | 10 +
man/findExperiments.Rd | 2
man/generateProblemInstance.Rd | 2
man/getAlgorithm.Rd | 13 +
man/getAlgorithmIds.Rd | 7
man/getIndex.Rd | 15 +
man/getJobs.ExperimentRegistry.Rd | 7
man/getProblem.Rd | 10 +
man/getProblemIds.Rd | 8 -
man/getResultVars.Rd | 2
man/makeDesign.Rd | 8 -
man/makeExperimentRegistry.Rd | 5
man/reduceResultsExperiments.Rd | 12 -
man/reduceResultsExperimentsParallel.Rd | 18 +-
man/removeAlgorithm.Rd | 6
man/removeExperiments.Rd | 6
man/removeProblem.Rd | 6
man/summarizeExperiments.Rd | 2
tests/testthat/test_reduceResults.R | 134 ++++++++++-------
tests/testthat/test_reduceResultsExperimentsParallel.R | 86 ++++++----
50 files changed, 437 insertions(+), 273 deletions(-)
Permanent link
Title: Graph estimation based on birth-death MCMC approach
Diff between BDgraph versions 2.11 dated 2014-09-23 and 2.12 dated 2014-09-24
Description: This package provides a Bayesian methodology for structure learning in undirected graphical models. Our Bayesian methodology is based on birth-death Markov chain Monte Carlo (BDMCMC) algorithm which is the main function with the name 'bdgraph'. The main target of this package is high-dimensional data analysis wherein usually p >> n. The computation is memory-optimized using the sparse matrix output.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi
DESCRIPTION | 6 ++--
MD5 | 6 ++--
R/BDgraph.R | 82 +++++++++++++++++++++++++--------------------------------
src/bdmcmc.cpp | 29 +++++++++-----------
4 files changed, 57 insertions(+), 66 deletions(-)
Title: R Database Interface
Diff between DBI versions 0.3.0 dated 2014-09-02 and 0.3.1 dated 2014-09-24
Description: A database interface (DBI) definition for communication
between R and relational database management systems. All
classes in this package are virtual and need to be extended by
the various R/DBMS implementations.
Author: R Special Interest Group on Databases (R-SIG-DB)
Maintainer: Hadley Wickham
DESCRIPTION | 11 ++++-------
MD5 | 12 ++++++------
NAMESPACE | 1 +
NEWS | 6 ++++++
R/DBConnection.R | 2 +-
R/DBObject.R | 1 +
README.md | 13 ++++++++-----
7 files changed, 27 insertions(+), 19 deletions(-)
More information about SimplicialCubature at CRAN
Permanent link
Title: Forecasting functions for time series and linear models
Diff between forecast versions 5.5 dated 2014-08-12 and 5.6 dated 2014-09-24
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob J Hyndman
Maintainer: Rob J Hyndman
ChangeLog | 10 +++
DESCRIPTION | 8 +-
MD5 | 18 +++---
R/arima.R | 3 -
R/checkAdmissibility.R | 4 -
R/clean.R | 3 -
R/ets.R | 110 +++++++++++++++++++++------------------
R/getResponse.R | 9 ---
R/newarima2.R | 13 ++--
src/etsTargetFunctionWrapper.cpp | 26 ++++-----
10 files changed, 112 insertions(+), 92 deletions(-)
Title: Calculate observed and expected disease incidence counts from a
case file and population data.
Diff between diseasemapping versions 0.7.7 dated 2014-08-14 and 1.0.1 dated 2014-09-24
More information about diseasemapping at CRAN
Description: Tools for calculating rates and Standardized Incidence Ratios from case and population data.
Author: Patrick Brown
Maintainer: Patrick Brown
DESCRIPTION | 15 +++++------
MD5 | 21 ++++++++--------
NAMESPACE | 3 ++
R/getRates.R | 18 +++++++-------
R/getSMR.data.frame.R | 53 ++++++++++++++++++++++++++----------------
man/cancerRates.Rd | 44 ++++++++++++++++++++++++++++------
man/diseasemapping-package.Rd | 49 ++++++++++++++++++++++++++------------
man/formatCases.Rd | 4 +--
man/formatPopulation.Rd | 2 -
man/getBreaks.Rd | 2 -
man/getRates.Rd | 12 ++++-----
tests/cancerRates.R |only
12 files changed, 142 insertions(+), 81 deletions(-)
Permanent link