Title: Modular Leaf Orering Methods for Dendrogram Nodes
Diff between dendsort versions 0.2.1 dated 2014-06-17 and 0.3.1 dated 2014-09-27
Description: This package includes functions to optimize ordering of nodes in a dendrogram,
without affecting the meaning of the dendrogram. A dendrogram can be sorted based
on the average distance of subtrees, or based on the smallest distance value.
These sorting methods improve readability and interpretability of tree structure,
especially for tasks such as comparison of different distance measures or linkage
types and identification of tight clusters and outliers. As a result, it also
introduces more meaningful reordering for a coupled heatmap visualization.
Author: Ryo Sakai
Maintainer: Ryo Sakai
DESCRIPTION | 15 +++++++++------
MD5 | 42 +++++++++++++++++++++++++-----------------
R/cal_length.R | 5 +++--
R/cal_node_limit.R | 5 +++--
R/cal_total_length.R | 5 +++--
R/dendsort-package.R |only
R/dendsort.R | 5 +++--
R/sort_average.R | 5 +++--
R/sort_average_r.R | 5 +++--
R/sort_smallest.R | 7 ++++---
R/sort_smallest_r.R | 5 +++--
build |only
data |only
inst/doc |only
man/cal_length.Rd | 2 +-
man/cal_node_limit.Rd | 2 +-
man/cal_total_length.Rd | 2 +-
man/dendsort.Rd | 2 +-
man/sample_tcga.Rd |only
man/sort_average.Rd | 2 +-
man/sort_average_r.Rd | 2 +-
man/sort_smallest.Rd | 2 +-
man/sort_smallest_r.Rd | 2 +-
vignettes |only
24 files changed, 67 insertions(+), 48 deletions(-)
Title: Mark-Recapture Distance Sampling (mrds)
Diff between mrds versions 2.1.8 dated 2014-09-15 and 2.1.10 dated 2014-09-27
Description: This package implements mark-recapture distance sampling
methods as described in D.L. Borchers, W. Zucchini and Fewster,
R.M. (1988), "Mark-recapture models for line transect surveys",
Biometrics 54: 1207-1220. and Laake, J.L. (1999) "Distance sampling
with independent observers: Reducing bias from heterogeneity by
weakening the conditional independence assumption." in Amstrup,
G.W., Garner, S.C., Laake, J.L., Manly, B.F.J., McDonald, L.L. and
Robertson, D.G. (eds) "Marine mammal survey and assessment
methods", Balkema, Rotterdam: 137-148 and Borchers, D.L., Laake,
J.L., Southwell, C. and Paxton, C.L.G. "Accommodating unmodelled
heterogeneity in double-observer distance sampling surveys". 2006.
Biometrics 62:372-378.)
Author: Jeff Laake
Maintainer: David Miller
mrds-2.1.10/mrds/DESCRIPTION | 8
mrds-2.1.10/mrds/MD5 | 253 +++++++++-----------
mrds-2.1.10/mrds/NAMESPACE | 2
mrds-2.1.10/mrds/NEWS | 12
mrds-2.1.10/mrds/man/DeltaMethod.Rd | 2
mrds-2.1.10/mrds/man/NCovered.Rd | 2
mrds-2.1.10/mrds/man/adj.check.order.Rd | 2
mrds-2.1.10/mrds/man/apex.gamma.Rd | 2
mrds-2.1.10/mrds/man/assign.default.values.Rd | 2
mrds-2.1.10/mrds/man/assign.par.Rd | 2
mrds-2.1.10/mrds/man/average.line.Rd | 2
mrds-2.1.10/mrds/man/average.line.cond.Rd | 2
mrds-2.1.10/mrds/man/book.tee.data.Rd | 2
mrds-2.1.10/mrds/man/calc.se.Np.Rd | 2
mrds-2.1.10/mrds/man/cdf.ds.Rd | 2
mrds-2.1.10/mrds/man/cds.Rd | 2
mrds-2.1.10/mrds/man/check.bounds.Rd | 2
mrds-2.1.10/mrds/man/check.mono.Rd | 2
mrds-2.1.10/mrds/man/coef.ds.Rd | 2
mrds-2.1.10/mrds/man/compute.Nht.Rd | 2
mrds-2.1.10/mrds/man/covered.region.dht.Rd | 2
mrds-2.1.10/mrds/man/create.ddfobj.Rd | 2
mrds-2.1.10/mrds/man/create.model.frame.Rd | 2
mrds-2.1.10/mrds/man/create.varstructure.Rd | 2
mrds-2.1.10/mrds/man/ddf.Rd | 2
mrds-2.1.10/mrds/man/ddf.ds.Rd | 2
mrds-2.1.10/mrds/man/ddf.gof.Rd | 2
mrds-2.1.10/mrds/man/ddf.io.Rd | 2
mrds-2.1.10/mrds/man/ddf.io.fi.Rd | 2
mrds-2.1.10/mrds/man/ddf.rem.Rd | 2
mrds-2.1.10/mrds/man/ddf.rem.fi.Rd | 2
mrds-2.1.10/mrds/man/ddf.trial.Rd | 2
mrds-2.1.10/mrds/man/ddf.trial.fi.Rd | 2
mrds-2.1.10/mrds/man/det.tables.Rd | 2
mrds-2.1.10/mrds/man/detfct.fit.Rd | 2
mrds-2.1.10/mrds/man/detfct.fit.opt.Rd | 2
mrds-2.1.10/mrds/man/dht.Rd | 2
mrds-2.1.10/mrds/man/dht.deriv.Rd | 2
mrds-2.1.10/mrds/man/dht.se.Rd | 2
mrds-2.1.10/mrds/man/distpdf.Rd | 24 -
mrds-2.1.10/mrds/man/ds.function.Rd | 2
mrds-2.1.10/mrds/man/errors.Rd | 2
mrds-2.1.10/mrds/man/flnl.Rd | 2
mrds-2.1.10/mrds/man/flt.var.Rd | 2
mrds-2.1.10/mrds/man/g0.Rd | 2
mrds-2.1.10/mrds/man/getpar.Rd | 2
mrds-2.1.10/mrds/man/gof.ds.Rd | 2
mrds-2.1.10/mrds/man/gstdint.Rd | 2
mrds-2.1.10/mrds/man/histline.Rd | 2
mrds-2.1.10/mrds/man/integratedetfct.logistic.Rd | 2
mrds-2.1.10/mrds/man/integratelogistic.analytic.Rd | 2
mrds-2.1.10/mrds/man/integratepdf.Rd | 2
mrds-2.1.10/mrds/man/io.glm.Rd | 2
mrds-2.1.10/mrds/man/is.linear.logistic.Rd | 2
mrds-2.1.10/mrds/man/is.logistic.constant.Rd | 2
mrds-2.1.10/mrds/man/keyfct.th1.Rd | 2
mrds-2.1.10/mrds/man/keyfct.th2.Rd | 2
mrds-2.1.10/mrds/man/lfbcvi.Rd | 2
mrds-2.1.10/mrds/man/lfgcwa.Rd | 2
mrds-2.1.10/mrds/man/logisticbyx.Rd | 2
mrds-2.1.10/mrds/man/logisticbyz.Rd | 2
mrds-2.1.10/mrds/man/logisticdetfct.Rd | 2
mrds-2.1.10/mrds/man/logisticdupbyx.Rd | 2
mrds-2.1.10/mrds/man/logit.Rd | 2
mrds-2.1.10/mrds/man/mcds.Rd | 2
mrds-2.1.10/mrds/man/mrds-opt.Rd | 2
mrds-2.1.10/mrds/man/mrds-package.Rd | 2
mrds-2.1.10/mrds/man/p.det.Rd | 2
mrds-2.1.10/mrds/man/pdot.dsr.integrate.logistic.Rd | 2
mrds-2.1.10/mrds/man/plot.det.tables.Rd | 2
mrds-2.1.10/mrds/man/plot.ds.Rd | 2
mrds-2.1.10/mrds/man/plot.io.Rd | 8
mrds-2.1.10/mrds/man/plot.io.fi.Rd | 8
mrds-2.1.10/mrds/man/plot.layout.Rd | 2
mrds-2.1.10/mrds/man/plot.rem.Rd | 12
mrds-2.1.10/mrds/man/plot.rem.fi.Rd | 8
mrds-2.1.10/mrds/man/plot.trial.Rd | 2
mrds-2.1.10/mrds/man/plot.trial.fi.Rd | 8
mrds-2.1.10/mrds/man/plot_cond.Rd | 2
mrds-2.1.10/mrds/man/plot_uncond.Rd | 2
mrds-2.1.10/mrds/man/predict.ds.Rd | 2
mrds-2.1.10/mrds/man/print.ddf.Rd | 2
mrds-2.1.10/mrds/man/print.ddf.gof.Rd | 2
mrds-2.1.10/mrds/man/print.det.tables.Rd | 2
mrds-2.1.10/mrds/man/print.dht.Rd | 2
mrds-2.1.10/mrds/man/print.summary.ds.Rd | 2
mrds-2.1.10/mrds/man/print.summary.io.Rd | 2
mrds-2.1.10/mrds/man/print.summary.io.fi.Rd | 2
mrds-2.1.10/mrds/man/print.summary.rem.Rd | 2
mrds-2.1.10/mrds/man/print.summary.rem.fi.Rd | 2
mrds-2.1.10/mrds/man/print.summary.trial.Rd | 2
mrds-2.1.10/mrds/man/print.summary.trial.fi.Rd | 2
mrds-2.1.10/mrds/man/prob.deriv.Rd | 2
mrds-2.1.10/mrds/man/prob.se.Rd | 2
mrds-2.1.10/mrds/man/process.data.Rd | 2
mrds-2.1.10/mrds/man/pronghorn.Rd | 2
mrds-2.1.10/mrds/man/ptdata.distance.Rd | 2
mrds-2.1.10/mrds/man/ptdata.dual.Rd | 2
mrds-2.1.10/mrds/man/ptdata.removal.Rd | 2
mrds-2.1.10/mrds/man/ptdata.single.Rd | 2
mrds-2.1.10/mrds/man/qqplot.ddf.Rd | 2
mrds-2.1.10/mrds/man/rem.glm.Rd | 2
mrds-2.1.10/mrds/man/setbounds.Rd | 2
mrds-2.1.10/mrds/man/setcov.Rd | 2
mrds-2.1.10/mrds/man/setinitial.ds.Rd | 2
mrds-2.1.10/mrds/man/sim.mix.Rd | 2
mrds-2.1.10/mrds/man/stake77.Rd | 2
mrds-2.1.10/mrds/man/stake78.Rd | 2
mrds-2.1.10/mrds/man/summary.ds.Rd | 2
mrds-2.1.10/mrds/man/summary.io.Rd | 2
mrds-2.1.10/mrds/man/summary.io.fi.Rd | 2
mrds-2.1.10/mrds/man/summary.rem.Rd | 2
mrds-2.1.10/mrds/man/summary.rem.fi.Rd | 2
mrds-2.1.10/mrds/man/summary.trial.Rd | 2
mrds-2.1.10/mrds/man/summary.trial.fi.Rd | 2
mrds-2.1.10/mrds/man/survey.region.dht.Rd | 2
mrds-2.1.10/mrds/man/test.breaks.Rd | 2
mrds-2.1.10/mrds/man/varn.Rd | 6
mrds-2.1.8/mrds/inst/testData |only
mrds-2.1.8/mrds/tests |only
120 files changed, 278 insertions(+), 285 deletions(-)
Title: Reads mass spectrometry data in Bruker *flex format
Diff between readBrukerFlexData versions 1.7 dated 2013-08-10 and 1.8 dated 2014-09-27
More information about readBrukerFlexData at CRAN
Description: Reads data files acquired by MALDI-TOF MS on Bruker Daltonics
machines of the *flex series.
Author: Sebastian Gibb [aut, cre]
Maintainer: Sebastian Gibb
readBrukerFlexData-1.7/readBrukerFlexData/R/mqReadBrukerFlex-functions.R |only
readBrukerFlexData-1.7/readBrukerFlexData/man/mqReadBrukerFlex.Rd |only
readBrukerFlexData-1.8/readBrukerFlexData/DESCRIPTION | 15
readBrukerFlexData-1.8/readBrukerFlexData/MD5 | 41 -
readBrukerFlexData-1.8/readBrukerFlexData/NAMESPACE | 3
readBrukerFlexData-1.8/readBrukerFlexData/NEWS | 3
readBrukerFlexData-1.8/readBrukerFlexData/R/package.R | 31 -
readBrukerFlexData-1.8/readBrukerFlexData/R/readBrukerFlexDir-functions.R | 1
readBrukerFlexData-1.8/readBrukerFlexData/man/changePrecision.Rd | 23
readBrukerFlexData-1.8/readBrukerFlexData/man/cpSpecHpcMzXml.Rd | 18
readBrukerFlexData-1.8/readBrukerFlexData/man/double2singlePrecision.Rd | 33 -
readBrukerFlexData-1.8/readBrukerFlexData/man/extractHPCConstants.Rd | 45 -
readBrukerFlexData-1.8/readBrukerFlexData/man/grepAcquDoubleValue.Rd | 18
readBrukerFlexData-1.8/readBrukerFlexData/man/grepAcquValue.Rd | 18
readBrukerFlexData-1.8/readBrukerFlexData/man/hpc.Rd | 78 +-
readBrukerFlexData-1.8/readBrukerFlexData/man/readAcquFile.Rd | 20
readBrukerFlexData-1.8/readBrukerFlexData/man/readBrukerFlexData-defunct.Rd |only
readBrukerFlexData-1.8/readBrukerFlexData/man/readBrukerFlexData-package.Rd | 33 -
readBrukerFlexData-1.8/readBrukerFlexData/man/readBrukerFlexDir.Rd | 78 +-
readBrukerFlexData-1.8/readBrukerFlexData/man/readBrukerFlexFile.Rd | 266 +++++-----
readBrukerFlexData-1.8/readBrukerFlexData/man/readFidFile.Rd | 27 -
readBrukerFlexData-1.8/readBrukerFlexData/man/sampleName.Rd | 33 -
readBrukerFlexData-1.8/readBrukerFlexData/man/tof2mass.Rd | 47 -
23 files changed, 421 insertions(+), 410 deletions(-)
Permanent link
Title: Extended and enhanced Hierarchical Logistic Regression models
(so called Huisman-Olff-Fresco models).
Diff between eHOF versions 1.4 dated 2014-04-23 and 1.5 dated 2014-09-27
Description: Hierarchical logistic species response curves along one-dimensional gradients including no response, monotone, plateau, unimodal and bimodal models.
Author: Florian Jansen, Jari Oksanen
Maintainer: Florian Jansen
eHOF-1.4/eHOF/R/zzz.R |only
eHOF-1.5/eHOF/DESCRIPTION | 10 +--
eHOF-1.5/eHOF/MD5 | 42 +++++++-----
eHOF-1.5/eHOF/R/HOF.data.frame.r | 8 ++
eHOF-1.5/eHOF/R/HOF.default.r | 4 -
eHOF-1.5/eHOF/R/Para.opt.r | 100 +++++++++++++++---------------
eHOF-1.5/eHOF/R/pick.model.r | 13 ++-
eHOF-1.5/eHOF/R/plot.HOF.list.r | 36 ++++++-----
eHOF-1.5/eHOF/R/plot.HOF.r | 2
eHOF-1.5/eHOF/R/print.HOF.list.r | 2
eHOF-1.5/eHOF/R/print.HOF.r | 6 -
eHOF-1.5/eHOF/R/zzz.r |only
eHOF-1.5/eHOF/build/vignette.rds |binary
eHOF-1.5/eHOF/inst/ChangeLog | 4 +
eHOF-1.5/eHOF/inst/doc/eHOF.R | 23 +------
eHOF-1.5/eHOF/inst/doc/eHOF.Rnw | 6 -
eHOF-1.5/eHOF/inst/doc/eHOF.pdf |binary
eHOF-1.5/eHOF/man/HOF.Rd | 3
eHOF-1.5/eHOF/vignettes/eHOF.Rnw | 6 -
eHOF-1.5/eHOF/vignettes/figure |only
eHOF-1.5/eHOF/vignettes/taxonnames.csv | 108 ++++++++++++++++-----------------
21 files changed, 193 insertions(+), 180 deletions(-)
Title: Trust region nonlinear optimization, efficient for sparse
Hessians
Diff between trustOptim versions 0.8.3 dated 2013-12-08 and 0.8.4.1 dated 2014-09-27
Description: Trust region algorithm for nonlinear optimization. In addition to
being more stable and robust than optim, this package includes
methods that are scalable and efficient (in terms
of both speed and memory usage) when the Hessian is sparse.
Author: Michael Braun
Maintainer: Michael Braun
trustOptim-0.8.3/trustOptim/R/demo_funcs.R |only
trustOptim-0.8.3/trustOptim/R/utils.R |only
trustOptim-0.8.3/trustOptim/demo/choice_dense.R |only
trustOptim-0.8.3/trustOptim/demo/choice_sparse.R |only
trustOptim-0.8.3/trustOptim/inst/include/defines_optim.hpp |only
trustOptim-0.8.3/trustOptim/inst/include/exceptions.hpp |only
trustOptim-0.8.3/trustOptim/inst/include/include_eigen.hpp |only
trustOptim-0.8.3/trustOptim/man/demo.funcs.Rd |only
trustOptim-0.8.3/trustOptim/man/inv.logit.Rd |only
trustOptim-0.8.3/trustOptim/man/log.inv.logit.Rd |only
trustOptim-0.8.3/trustOptim/man/trustOptim-package.Rd |only
trustOptim-0.8.3/trustOptim/src/Rinterface.cpp |only
trustOptim-0.8.4.1/trustOptim/DESCRIPTION | 25
trustOptim-0.8.4.1/trustOptim/MD5 | 67
trustOptim-0.8.4.1/trustOptim/NAMESPACE | 20
trustOptim-0.8.4.1/trustOptim/NEWS | 13
trustOptim-0.8.4.1/trustOptim/R/callTrust.R | 142 +
trustOptim-0.8.4.1/trustOptim/R/hbc_funcs.R |only
trustOptim-0.8.4.1/trustOptim/R/logit.R |only
trustOptim-0.8.4.1/trustOptim/R/rosen_funcs.R |only
trustOptim-0.8.4.1/trustOptim/R/trustOptim.R |only
trustOptim-0.8.4.1/trustOptim/R/vech.R |only
trustOptim-0.8.4.1/trustOptim/build/vignette.rds |binary
trustOptim-0.8.4.1/trustOptim/demo/00Index | 4
trustOptim-0.8.4.1/trustOptim/demo/hbc_sparse.R |only
trustOptim-0.8.4.1/trustOptim/inst/CITATION |only
trustOptim-0.8.4.1/trustOptim/inst/doc/trustOptim.Rnw | 1053 +++++++++----
trustOptim-0.8.4.1/trustOptim/inst/doc/trustOptim.pdf |binary
trustOptim-0.8.4.1/trustOptim/inst/include/CG-base.h | 881 +++++-----
trustOptim-0.8.4.1/trustOptim/inst/include/CG-quasi.h | 40
trustOptim-0.8.4.1/trustOptim/inst/include/CG-sparse.h | 431 ++---
trustOptim-0.8.4.1/trustOptim/inst/include/Rfunc.cpp | 128 -
trustOptim-0.8.4.1/trustOptim/inst/include/RfuncHess.cpp | 200 +-
trustOptim-0.8.4.1/trustOptim/inst/include/common_R.hpp | 168 +-
trustOptim-0.8.4.1/trustOptim/man/demo_funcs_hbc.Rd |only
trustOptim-0.8.4.1/trustOptim/man/inv.vech.Rd | 24
trustOptim-0.8.4.1/trustOptim/man/logit.Rd | 41
trustOptim-0.8.4.1/trustOptim/man/rosen.Rd |only
trustOptim-0.8.4.1/trustOptim/man/trust.optim.Rd | 132 -
trustOptim-0.8.4.1/trustOptim/man/trustOptim.Rd |only
trustOptim-0.8.4.1/trustOptim/man/vech.Rd | 27
trustOptim-0.8.4.1/trustOptim/src/Makevars | 3
trustOptim-0.8.4.1/trustOptim/src/Makevars.win | 1
trustOptim-0.8.4.1/trustOptim/src/trustOptim.cpp |only
trustOptim-0.8.4.1/trustOptim/vignettes/trustOptim.Rnw | 1052 +++++++++---
trustOptim-0.8.4.1/trustOptim/vignettes/trustOptim.bib | 361 ++--
46 files changed, 3045 insertions(+), 1768 deletions(-)
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-39 dated 2014-09-18 and 0.9-40 dated 2014-09-27
Description: This package contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
DESCRIPTION | 8
MD5 | 38 +--
NAMESPACE | 20 -
R/MVA.synt.R | 434 +++++++++++++++----------------------------
R/lsm.basis.clm.R | 4
R/lsm.basis.clmm.R | 4
R/perm.anova.R | 28 +-
R/perm.bartlett.test.R | 2
R/perm.cor.test.R | 6
R/perm.t.test.R | 6
R/perm.var.test.R | 6
R/wald.ptheo.test.R |only
R/zzz.R | 2
man/MVA.synt.Rd | 4
man/RVAideMemoire-package.Rd | 4
man/perm.anova.Rd | 2
man/perm.bartlett.test.Rd | 3
man/perm.cor.test.Rd | 3
man/perm.t.test.Rd | 3
man/perm.var.test.Rd | 3
man/wald.ptheo.test.Rd |only
21 files changed, 231 insertions(+), 349 deletions(-)
Title: Propagation of Uncertainty
Diff between propagate versions 1.0-3 dated 2014-03-03 and 1.0-4 dated 2014-09-27
Description: Propagation of uncertainty using higher-order Taylor expansion and Monte Carlo simulation.
Author: Andrej-Nikolai Spiess
Maintainer: Andrej-Nikolai Spiess
DESCRIPTION | 8 +--
MD5 | 24 +++++----
NAMESPACE | 17 ++++---
NEWS | 13 +++++
R/interval.R |only
R/predictNLS.R | 2
R/print.propagate.R | 38 +--------------
R/propagate.R | 113 +++++++++++++++++++++++++----------------------
R/summary.propagate.R |only
R/utils.R | 6 ++
man/fitDistr.Rd | 2
man/interval.Rd |only
man/print.propagate.Rd | 11 ++--
man/propagate.Rd | 52 +++++++++++++++++----
man/summary.propagate.Rd |only
15 files changed, 162 insertions(+), 124 deletions(-)
Title: Hierarchical Generalized Linear Models
Diff between hglm versions 2.0-8 dated 2014-07-23 and 2.0-9 dated 2014-09-27
Description: The hglm package is used to fit hierarchical generalized linear models. It can be used for linear mixed models and generalized linear mixed models with random effects for a variety of links and a variety of distributions for both the outcomes and the random effects. Fixed effects can also be fitted in the dispersion part of the mean model.
Author: Xia Shen, Moudud Alam, Lars Ronnegard
Maintainer: Xia Shen
ChangeLog | 7 +++++++
DESCRIPTION | 10 +++++-----
MD5 | 16 ++++++++--------
R/likelihood.R | 3 ++-
build/vignette.rds |binary
man/CAR.Rd | 2 +-
man/hglm-package.Rd | 6 +++---
man/hglm.Rd | 4 ++--
man/hglm2.Rd | 2 +-
9 files changed, 29 insertions(+), 21 deletions(-)
Title: Improved access for blind useRs
Diff between BrailleR versions 0.9 dated 2014-06-27 and 0.11 dated 2014-09-27
Description: Blind useRs do not have access to the graphical output from R without printing the content of graph windows to an embosser of some kind. This is not as immediate as is required for efficient access to statistical output. The functions here are created so that blind people can make even better use of R.
Author: A. Jonathan R. Godfrey [aut, cre], Greg Snow [ctb], Paul Murrell [ctb], Yihui Xie [ctb]
Maintainer: A. Jonathan R. Godfrey
BrailleR-0.11/BrailleR/DESCRIPTION | 21 ++--
BrailleR-0.11/BrailleR/MD5 | 43 ++++++----
BrailleR-0.11/BrailleR/NAMESPACE | 4
BrailleR-0.11/BrailleR/R/MaskedFunctions.R |only
BrailleR-0.11/BrailleR/R/NonMethodFunctions.R |only
BrailleR-0.11/BrailleR/R/R2txtExtraJG.R |only
BrailleR-0.11/BrailleR/R/UniDesc.R |only
BrailleR-0.11/BrailleR/R/VIMethod.R |only
BrailleR-0.11/BrailleR/R/WhereXY.R |only
BrailleR-0.11/BrailleR/build |only
BrailleR-0.11/BrailleR/inst/doc/BrailleRManual.R |only
BrailleR-0.11/BrailleR/inst/doc/BrailleRManual.html |only
BrailleR-0.11/BrailleR/inst/doc/BrailleRManual.rmd |only
BrailleR-0.11/BrailleR/inst/doc/Ex1histograms.R |only
BrailleR-0.11/BrailleR/inst/doc/Ex1histograms.html |only
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Title: R Commander
Diff between Rcmdr versions 2.1-1 dated 2014-09-04 and 2.1-2 dated 2014-09-27
Description:
A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox
DESCRIPTION | 13
MD5 | 26
NEWS | 6
R/commander.R | 29 -
R/data-menu.R | 3
R/graphs-menu.R | 59 +-
R/startup.R | 4
R/utilities.R | 54 +
inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary
inst/doc/Rcmdr-manual-source.zip |binary
inst/etc/Rcmdr-menus.txt | 794 ++++++++++++++--------------
man/Commander.Rd | 4
man/Rcmdr-package.Rd | 4
man/Rcmdr.Utilities.Rd | 5
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Title: Rigorous - Positron Emission Tomography
Diff between oro.pet versions 0.2.1 dated 2012-07-20 and 0.2.3 dated 2014-09-27
Description: Image analysis techniques for positron emission tomography
(PET) that form part of the Rigorous Analytics bundle.
Author: Brandon Whitcher
Maintainer: Brandon Whitcher
oro.pet-0.2.1/oro.pet/COPYING |only
oro.pet-0.2.3/oro.pet/DESCRIPTION | 26 +++++-----
oro.pet-0.2.3/oro.pet/LICENSE |only
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oro.pet-0.2.3/oro.pet/R/qiba.R | 71 ++++++++++--------------------
oro.pet-0.2.3/oro.pet/R/reference.R | 13 ++---
oro.pet-0.2.3/oro.pet/R/wrappers.R | 2
oro.pet-0.2.3/oro.pet/R/zzz.R | 2
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oro.pet-0.2.3/oro.pet/man/qiba.Rd | 2
oro.pet-0.2.3/oro.pet/man/srtm.Rd | 2
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Title: A Robust, High Performance JSON Parser and Generator for R
Diff between jsonlite versions 0.9.11 dated 2014-09-04 and 0.9.12 dated 2014-09-27
Description: A fast JSON parser and generator optimized for statistical data and
the web. Started out as a fork of RJSONIO, but has been completely rewritten
in recent versions. The package offers flexible, robust, high performance
tools for working with JSON in R and is particularly powerful for building
pipelines and interacting with web APIs. The parser implementation is based
on the mapping described in the vignette of the package (Ooms, 2014). In
addition to drop-in replacements for toJSON and fromJSON, jsonlite contains
functions to stream, validate, and prettify JSON data, and many unit
tests to verify that all edge cases are encoded and decoded consistently
for use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms
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jsonlite-0.9.12/jsonlite/MD5 | 185 ++++------
jsonlite-0.9.12/jsonlite/NAMESPACE | 16
jsonlite-0.9.12/jsonlite/NEWS | 14
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jsonlite-0.9.12/jsonlite/R/asJSON.data.frame.R | 40 --
jsonlite-0.9.12/jsonlite/R/asJSON.list.R | 4
jsonlite-0.9.12/jsonlite/R/cleannames.R | 8
jsonlite-0.9.12/jsonlite/R/collapse.R | 2
jsonlite-0.9.12/jsonlite/R/collapse_object.R |only
jsonlite-0.9.12/jsonlite/R/deparse_vector.R | 2
jsonlite-0.9.12/jsonlite/R/flatten.R |only
jsonlite-0.9.12/jsonlite/R/fromJSON.R | 68 +--
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jsonlite-0.9.12/jsonlite/R/parseJSON.R | 15
jsonlite-0.9.12/jsonlite/R/prettify.R | 29 +
jsonlite-0.9.12/jsonlite/R/print.R | 8
jsonlite-0.9.12/jsonlite/R/rbind.pages.R | 11
jsonlite-0.9.12/jsonlite/R/serializeJSON.R | 14
jsonlite-0.9.12/jsonlite/R/simplify.R | 42 --
jsonlite-0.9.12/jsonlite/R/simplifyDataFrame.R | 22 +
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jsonlite-0.9.12/jsonlite/R/toJSON.R | 2
jsonlite-0.9.12/jsonlite/R/toMongo.R | 9
jsonlite-0.9.12/jsonlite/R/unbox.R | 4
jsonlite-0.9.12/jsonlite/R/validate.R | 8
jsonlite-0.9.12/jsonlite/build/vignette.rds |binary
jsonlite-0.9.12/jsonlite/inst/doc/json-aaquickstart.R | 15
jsonlite-0.9.12/jsonlite/inst/doc/json-aaquickstart.Rmd | 49 +-
jsonlite-0.9.12/jsonlite/inst/doc/json-aaquickstart.html | 102 +++--
jsonlite-0.9.12/jsonlite/inst/doc/json-apis.html | 19 -
jsonlite-0.9.12/jsonlite/inst/doc/json-mapping.pdf |binary
jsonlite-0.9.12/jsonlite/inst/doc/json-opencpu.pdf |binary
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jsonlite-0.9.12/jsonlite/inst/tests/test-libjson-escaping.R | 3
jsonlite-0.9.12/jsonlite/inst/tests/test-serializeJSON-types.R | 12
jsonlite-0.9.12/jsonlite/inst/tests/test-toJSON-NA-values.R | 8
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jsonlite-0.9.12/jsonlite/man/fromJSON.Rd | 48 +-
jsonlite-0.9.12/jsonlite/man/prettify.Rd | 8
jsonlite-0.9.12/jsonlite/man/rbind.pages.Rd | 8
jsonlite-0.9.12/jsonlite/man/serializeJSON.Rd | 16
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jsonlite-0.9.12/jsonlite/man/toMongo.Rd | 10
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jsonlite-0.9.12/jsonlite/man/validate.Rd | 6
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jsonlite-0.9.12/jsonlite/src/collapse_array.c | 2
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jsonlite-0.9.12/jsonlite/src/yajl |only
jsonlite-0.9.12/jsonlite/vignettes/json-aaquickstart.Rmd | 49 +-
jsonlite-0.9.12/jsonlite/vignettes/json-apis.Rmd.orig | 7
jsonlite-0.9.12/jsonlite/vignettes/precompile.R |only
81 files changed, 475 insertions(+), 463 deletions(-)