Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-29 0.4
Title: 3D visualization device system (OpenGL)
Diff between rgl versions 0.94.1131 dated 2014-09-08 and 0.94.1143 dated 2014-09-30
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler
Maintainer: Duncan Murdoch
DESCRIPTION | 10
MD5 | 57
NAMESPACE | 2
R/persp3d.R | 71
R/plot3d.R | 2
R/webGL.R | 3578 +++++++++++++++++++++++-------------------------
inst/NEWS | 11
man/persp3d.Rd | 17
man/persp3d.function.Rd |only
man/plot3d.Rd | 1
man/subscene3d.Rd | 4
src/Background.cpp | 2
src/NULLgui.cpp | 6
src/Texture.cpp | 227 +--
src/Viewpoint.cpp | 17
src/Viewpoint.h | 6
src/callbacks.cpp | 8
src/device.cpp | 3
src/geom.cpp | 31
src/geom.h | 1
src/glgui.cpp | 11
src/gui.cpp | 26
src/gui.h | 5
src/par3d.cpp | 56
src/rglmath.cpp | 39
src/rglmath.h | 7
src/rglview.cpp | 14
src/rglview.h | 3
src/subscene.cpp | 84 -
src/subscene.h | 12
30 files changed, 2231 insertions(+), 2080 deletions(-)
Title: Pipe operator and function
Diff between pipeR versions 0.4-2 dated 2014-08-22 and 0.5 dated 2014-09-30
Description: Provides Pipe operator and function based on syntax which support
to pipe value to first-argument of a function, to dot in expression,
by formula as lambda expression, for side-effect, and with assignment.
The set of syntax is designed to make the pipeline highly readable.
Author: Kun Ren
Maintainer: Kun Ren
pipeR-0.4-2/pipeR/R/legacy.R |only
pipeR-0.4-2/pipeR/build |only
pipeR-0.4-2/pipeR/man/deprecated.Rd |only
pipeR-0.4-2/pipeR/tests/testthat/test3-Performance.R |only
pipeR-0.5/pipeR/DESCRIPTION | 21
pipeR-0.5/pipeR/MD5 | 40 -
pipeR-0.5/pipeR/NAMESPACE | 4
pipeR-0.5/pipeR/NEWS | 14
pipeR-0.5/pipeR/R/functions.R | 149 +++---
pipeR-0.5/pipeR/R/pipe.R | 193 ++++---
pipeR-0.5/pipeR/R/pipeR.R | 115 ++++
pipeR-0.5/pipeR/R/utils.R | 19
pipeR-0.5/pipeR/README.md | 242 ++++++----
pipeR-0.5/pipeR/inst/doc/Examples.R | 1
pipeR-0.5/pipeR/inst/doc/Examples.html | 60 ++
pipeR-0.5/pipeR/inst/doc/Introduction.html | 185 ++++---
pipeR-0.5/pipeR/inst/doc/Performance.R | 50 --
pipeR-0.5/pipeR/inst/doc/Performance.html | 150 ------
pipeR-0.5/pipeR/inst/doc/Pipe.R |only
pipeR-0.5/pipeR/inst/doc/Pipe.html |only
pipeR-0.5/pipeR/man/Pipe.Rd | 37 +
pipeR-0.5/pipeR/man/grapes-greater-than-greater-than-grapes.Rd | 115 ++++
pipeR-0.5/pipeR/tests/testthat/test1-operator.R | 108 ++++
pipeR-0.5/pipeR/tests/testthat/test2-Pipe.R | 69 ++
24 files changed, 1011 insertions(+), 561 deletions(-)
Title: An R package for reading and writing BAM (Binary alignment)
files.
Diff between rbamtools versions 2.9.14 dated 2014-07-29 and 2.10.0 dated 2014-09-30
Description: This package provides an interface to functions of the
'SAMtools' C-Library by Heng Li.
Author: Wolfgang Kaisers
Maintainer: Wolfgang Kaisers
rbamtools-2.10.0/rbamtools/ChangeLog | 15
rbamtools-2.10.0/rbamtools/DESCRIPTION | 9
rbamtools-2.10.0/rbamtools/MD5 | 110 +-
rbamtools-2.10.0/rbamtools/NAMESPACE | 6
rbamtools-2.10.0/rbamtools/NEWS | 27
rbamtools-2.10.0/rbamtools/R/rbamtools.r | 842 ++++++++++++----
rbamtools-2.10.0/rbamtools/inst/doc/rbamtools.R | 14
rbamtools-2.10.0/rbamtools/inst/doc/rbamtools.Rnw | 18
rbamtools-2.10.0/rbamtools/inst/doc/rbamtools.pdf |binary
rbamtools-2.10.0/rbamtools/man/alignDepth-class.Rd | 75 +
rbamtools-2.10.0/rbamtools/man/as.data.frame-methods.Rd | 22
rbamtools-2.10.0/rbamtools/man/bamAlign-class.Rd | 201 ++-
rbamtools-2.10.0/rbamtools/man/bamAlign.Rd | 61 -
rbamtools-2.10.0/rbamtools/man/bamClose-methods.Rd | 12
rbamtools-2.10.0/rbamtools/man/bamCount.Rd | 33
rbamtools-2.10.0/rbamtools/man/bamHeader-class.Rd | 35
rbamtools-2.10.0/rbamtools/man/bamHeaderText-class.Rd | 76 +
rbamtools-2.10.0/rbamtools/man/bamRange-class.Rd | 155 ++
rbamtools-2.10.0/rbamtools/man/bamRange.Rd | 66 -
rbamtools-2.10.0/rbamtools/man/bamReader-class.Rd | 193 ++-
rbamtools-2.10.0/rbamtools/man/bamReader.Rd | 31
rbamtools-2.10.0/rbamtools/man/bamSort.Rd | 57 -
rbamtools-2.10.0/rbamtools/man/bamWriter-class.Rd | 66 -
rbamtools-2.10.0/rbamtools/man/bamWriter.Rd | 22
rbamtools-2.10.0/rbamtools/man/countNucs.Rd | 13
rbamtools-2.10.0/rbamtools/man/countTextLines.Rd | 21
rbamtools-2.10.0/rbamtools/man/createIdxBatch.Rd |only
rbamtools-2.10.0/rbamtools/man/extractRanges.Rd | 53 -
rbamtools-2.10.0/rbamtools/man/filename-methods.Rd | 12
rbamtools-2.10.0/rbamtools/man/gapList-class.Rd | 58 -
rbamtools-2.10.0/rbamtools/man/gapSiteList-class.Rd | 57 -
rbamtools-2.10.0/rbamtools/man/getHeaderText-methods.Rd | 47
rbamtools-2.10.0/rbamtools/man/getNextAlign-methods.Rd | 32
rbamtools-2.10.0/rbamtools/man/getQualDf.Rd | 36
rbamtools-2.10.0/rbamtools/man/getRefData.Rd | 23
rbamtools-2.10.0/rbamtools/man/getVal.Rd | 30
rbamtools-2.10.0/rbamtools/man/headerLine-class.Rd | 45
rbamtools-2.10.0/rbamtools/man/headerProgram-class.Rd | 51
rbamtools-2.10.0/rbamtools/man/headerReadGroup-class.Rd | 84 +
rbamtools-2.10.0/rbamtools/man/isOpen-methods.Rd | 29
rbamtools-2.10.0/rbamtools/man/nucStats.Rd | 22
rbamtools-2.10.0/rbamtools/man/range2fastq.Rd | 36
rbamtools-2.10.0/rbamtools/man/rbamtools-package.Rd | 38
rbamtools-2.10.0/rbamtools/man/readPooledBamGapDf.Rd | 32
rbamtools-2.10.0/rbamtools/man/readPooledBamGaps.Rd | 21
rbamtools-2.10.0/rbamtools/man/reader2fastq.Rd | 35
rbamtools-2.10.0/rbamtools/man/refSeqDict-class.Rd | 68 -
rbamtools-2.10.0/rbamtools/man/setVal.Rd | 36
rbamtools-2.10.0/rbamtools/src/rbamtools.c | 395 ++++---
rbamtools-2.10.0/rbamtools/src/rbamtools.h | 22
rbamtools-2.10.0/rbamtools/src/samtools/bam.h | 2
rbamtools-2.10.0/rbamtools/src/samtools/ksort.h | 11
rbamtools-2.10.0/rbamtools/src/samtools/razf.c | 2
rbamtools-2.10.0/rbamtools/tests/test-all.R | 3
rbamtools-2.10.0/rbamtools/tests/test_bam_align.r |only
rbamtools-2.10.0/rbamtools/tests/test_bam_header.r |only
rbamtools-2.10.0/rbamtools/vignettes/rbamtools.Rnw | 18
rbamtools-2.9.14/rbamtools/man/create.idx.batch.Rd |only
58 files changed, 2528 insertions(+), 950 deletions(-)
Title: Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Diff between protViz versions 0.2.06 dated 2014-09-18 and 0.2.9 dated 2014-09-30
Description: This R package helps with quality checks, visualizations
and analysis of mass spectrometry data, coming from proteomics
experiments. The package is developed, tested and used at the Functional
Genomics Center Zurich. We use this package mainly for prototyping,
teaching, and having fun with proteomics data. But it can also be
used to do data analysis for small scale data sets.
Author: Christian Panse
Maintainer: Christian Panse
DESCRIPTION | 10 ++--
MD5 | 48 ++++++++++----------
R/sysdata.rda |binary
build/vignette.rds |binary
data/AA.RData |binary
data/HexNAc.RData |binary
data/averagine.RData |binary
data/datalist | 1
data/fetuinLFQ.RData |binary
data/iRTpeptides.RData |binary
data/iTRAQ.RData |binary
data/msms.RData |binary
data/pgLFQfeature.RData |binary
data/pgLFQprot.RData |binary
data/pressureProfile.RData |binary
data/sigmamix.RData |only
exec/protViz_mgf2RData.pl | 94 ++++++++++++++++++++++++++++++++++++++---
inst/doc/PTM_MarkerFinder.R | 18 +++----
inst/doc/PTM_MarkerFinder.Rnw | 5 --
inst/doc/PTM_MarkerFinder.pdf |binary
inst/doc/protViz.R | 38 ++++++++--------
inst/doc/protViz.Rnw | 12 ++---
inst/doc/protViz.pdf |binary
man/sigmamix.Rd |only
vignettes/PTM_MarkerFinder.Rnw | 5 --
vignettes/protViz.Rnw | 12 ++---
26 files changed, 159 insertions(+), 84 deletions(-)
Title: Non-parametric Bayesian Multiple Imputation for Categorical Data
Diff between NPBayesImpute versions 0.2 dated 2014-09-04 and 0.3 dated 2014-09-30
Description: These routines create multiple imputations of missing at random categorical data, with or without structural zeros. Imputations are based on Dirichlet process mixtures of multinomial distributions, which is a non-parametric Bayesian modeling approach that allows for flexible joint modeling.
Author: Quanli Wang, Daniel Manrique-Vallier, Jerome P. Reiter and Jingchen Hu
Maintainer: Quanli Wang
DESCRIPTION | 6 +++---
MD5 | 4 ++--
R/ArrayUtils.R | 41 ++++++++++++++++++++++++++++++++++++-----
3 files changed, 41 insertions(+), 10 deletions(-)
Title: Latent Variable Analysis
Diff between lavaan versions 0.5-16 dated 2014-03-07 and 0.5-17 dated 2014-09-30
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre],
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsikatsou [ctb],
Mariska Barendse [ctb]
Maintainer: Yves Rosseel
lavaan-0.5-16/lavaan/R/lav_methods.R |only
lavaan-0.5-17/lavaan/DESCRIPTION | 8
lavaan-0.5-17/lavaan/MD5 | 133 +++++-----
lavaan-0.5-17/lavaan/NAMESPACE | 22 +
lavaan-0.5-17/lavaan/R/00class.R | 2
lavaan-0.5-17/lavaan/R/00generic.R | 5
lavaan-0.5-17/lavaan/R/01RefClass_02lavML.R | 2
lavaan-0.5-17/lavaan/R/FIX_semTools.R | 2
lavaan-0.5-17/lavaan/R/ctr_estfun.R | 42 ++-
lavaan-0.5-17/lavaan/R/ctr_informative_testing.R | 250 ++++++--------------
lavaan-0.5-17/lavaan/R/lav_bootstrap_lrt.R | 14 -
lavaan-0.5-17/lavaan/R/lav_constraints.R | 8
lavaan-0.5-17/lavaan/R/lav_cor.R | 9
lavaan-0.5-17/lavaan/R/lav_data.R | 23 +
lavaan-0.5-17/lavaan/R/lav_dataframe.R | 17 +
lavaan-0.5-17/lavaan/R/lav_deriv.R | 72 ++++-
lavaan-0.5-17/lavaan/R/lav_export_mplus.R | 15 +
lavaan-0.5-17/lavaan/R/lav_fit.R | 14 -
lavaan-0.5-17/lavaan/R/lav_fit_measures.R | 74 ++++-
lavaan-0.5-17/lavaan/R/lav_gamma.R | 18 -
lavaan-0.5-17/lavaan/R/lav_information.R | 57 +---
lavaan-0.5-17/lavaan/R/lav_matrix.R | 23 +
lavaan-0.5-17/lavaan/R/lav_missing.R | 11
lavaan-0.5-17/lavaan/R/lav_model_compute.R | 17 +
lavaan-0.5-17/lavaan/R/lav_model_estimate.R | 15 +
lavaan-0.5-17/lavaan/R/lav_model_gradient.R | 22 +
lavaan-0.5-17/lavaan/R/lav_model_gradient_mml.R | 2
lavaan-0.5-17/lavaan/R/lav_model_objective.R | 13 -
lavaan-0.5-17/lavaan/R/lav_model_utils.R | 7
lavaan-0.5-17/lavaan/R/lav_model_wls.R | 54 ++++
lavaan-0.5-17/lavaan/R/lav_modification.R | 42 ++-
lavaan-0.5-17/lavaan/R/lav_muthen1984.R | 30 ++
lavaan-0.5-17/lavaan/R/lav_nlminb_constr.R | 4
lavaan-0.5-17/lavaan/R/lav_object_inspect.R |only
lavaan-0.5-17/lavaan/R/lav_object_methods.R |only
lavaan-0.5-17/lavaan/R/lav_objective.R | 21 +
lavaan-0.5-17/lavaan/R/lav_options.R | 6
lavaan-0.5-17/lavaan/R/lav_partable.R | 64 ++++-
lavaan-0.5-17/lavaan/R/lav_partable_check.R |only
lavaan-0.5-17/lavaan/R/lav_partable_independence.R | 35 ++
lavaan-0.5-17/lavaan/R/lav_partable_unrestricted.R | 67 ++++-
lavaan-0.5-17/lavaan/R/lav_partable_vnames.R | 29 ++
lavaan-0.5-17/lavaan/R/lav_polychor.R | 45 +++
lavaan-0.5-17/lavaan/R/lav_polyserial.R | 18 +
lavaan-0.5-17/lavaan/R/lav_predict.R | 114 ++++++---
lavaan-0.5-17/lavaan/R/lav_print.R | 7
lavaan-0.5-17/lavaan/R/lav_probit.R | 5
lavaan-0.5-17/lavaan/R/lav_representation_lisrel.R | 213 +++++++++--------
lavaan-0.5-17/lavaan/R/lav_residuals.R | 18 -
lavaan-0.5-17/lavaan/R/lav_samplestats.R | 59 +++-
lavaan-0.5-17/lavaan/R/lav_simulate.R | 17 +
lavaan-0.5-17/lavaan/R/lav_start.R | 20 +
lavaan-0.5-17/lavaan/R/lav_syntax.R | 19 +
lavaan-0.5-17/lavaan/R/lav_tables.R | 77 ++++--
lavaan-0.5-17/lavaan/R/lav_tables_mvb.R |only
lavaan-0.5-17/lavaan/R/lav_test.R | 100 +++++---
lavaan-0.5-17/lavaan/R/lav_test_LRT.R | 6
lavaan-0.5-17/lavaan/R/lav_test_Wald.R | 4
lavaan-0.5-17/lavaan/R/lav_vcov.R | 10
lavaan-0.5-17/lavaan/R/lavaan.R | 70 ++++-
lavaan-0.5-17/lavaan/R/zzz_OLDNAMES.R |only
lavaan-0.5-17/lavaan/man/cfa.Rd | 4
lavaan-0.5-17/lavaan/man/growth.Rd | 4
lavaan-0.5-17/lavaan/man/lavInspect.Rd |only
lavaan-0.5-17/lavaan/man/lavTables.Rd | 6
lavaan-0.5-17/lavaan/man/lav_func.Rd |only
lavaan-0.5-17/lavaan/man/lav_partable.Rd |only
lavaan-0.5-17/lavaan/man/lavaan-class.Rd | 75 ------
lavaan-0.5-17/lavaan/man/lavaan.Rd | 6
lavaan-0.5-17/lavaan/man/plot.InformativeTesting.Rd | 17 -
lavaan-0.5-17/lavaan/man/sem.Rd | 4
lavaan-0.5-17/lavaan/man/simulateData.Rd | 1
72 files changed, 1417 insertions(+), 751 deletions(-)
Title: Reverse correlation image classification toolbox
Diff between rcicr versions 0.2.1 dated 2014-07-31 and 0.2.4 dated 2014-09-30
Description: Functions to generate stimuli and analyze data of reverse correlation image classification experiments.
Author: Ron Dotsch
Maintainer: Ron Dotsch
ChangeLog |only
DESCRIPTION | 11 +++---
MD5 | 12 ++++---
NAMESPACE | 1
R/rcicr_2IFC.R | 74 +++++++++++++++++++++++++++++++++++++++++++--
man/batchGenerateCI2IFC.Rd |only
man/generateStimuli2IFC.Rd | 4 +-
man/rcicr-package.Rd | 36 ++++++++++++++++++++-
8 files changed, 122 insertions(+), 16 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies
Diff between PowerTOST versions 1.1-13 dated 2014-08-12 and 1.2-01 dated 2014-09-30
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits based on simulations.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / samplesize estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut]
Maintainer: Detlew Labes
PowerTOST-1.1-13/PowerTOST/inst/doc/Implementation_scaledABE_simsV0.05.pdf |only
PowerTOST-1.2-01/PowerTOST/DESCRIPTION | 71 +++++-----
PowerTOST-1.2-01/PowerTOST/MD5 | 27 ++-
PowerTOST-1.2-01/PowerTOST/NAMESPACE | 8 +
PowerTOST-1.2-01/PowerTOST/NEWS | 15 ++
PowerTOST-1.2-01/PowerTOST/R/SampleSize.R | 3
PowerTOST-1.2-01/PowerTOST/R/SampleSize_doseprop.R |only
PowerTOST-1.2-01/PowerTOST/R/pa.ABE.R |only
PowerTOST-1.2-01/PowerTOST/R/pa.NTID.R |only
PowerTOST-1.2-01/PowerTOST/R/pa.scABE.R |only
PowerTOST-1.2-01/PowerTOST/R/power2.R | 2
PowerTOST-1.2-01/PowerTOST/R/power_doseprop.R |only
PowerTOST-1.2-01/PowerTOST/R/pwrA_S3methods.R |only
PowerTOST-1.2-01/PowerTOST/inst/doc/BE_power_sample_size_excerpt_V06.pdf |binary
PowerTOST-1.2-01/PowerTOST/inst/doc/Implementation_scaledABE_simsV0.06.pdf |only
PowerTOST-1.2-01/PowerTOST/man/pa.ABE.Rd |only
PowerTOST-1.2-01/PowerTOST/man/pa.NTIDFDA.Rd |only
PowerTOST-1.2-01/PowerTOST/man/pa.scABE.Rd |only
PowerTOST-1.2-01/PowerTOST/man/power.dp.Rd |only
PowerTOST-1.2-01/PowerTOST/man/sampleN.TOST.Rd | 16 +-
PowerTOST-1.2-01/PowerTOST/man/sampleN.dp.Rd |only
21 files changed, 91 insertions(+), 51 deletions(-)
Title: Regularized Categorical Effects/Categorical Effect
Modifiers/Continuous/Smooth effects in GLMs
Diff between gvcm.cat versions 1.6 dated 2013-11-14 and 1.7 dated 2014-09-30
Description: Generalized structured regression models with regularized categorical effects, categorical effect modifiers, continuous effects and smooth effects.
Author: Margret Oelker
Maintainer: Margret Oelker
DESCRIPTION | 12 ++++++------
MD5 | 14 +++++++-------
R/a.coefs.R | 6 +++---
R/cv.vectors.R | 6 +++---
R/gvcm.cat.default.R | 37 +++++++++++++++++++------------------
R/optimierung.R | 18 ++++++++++--------
R/path.matrix.R | 4 ++--
R/pest.R | 4 +++-
8 files changed, 53 insertions(+), 48 deletions(-)
Title: Curculionidae INstar IDentification
Diff between CINID versions 1.0 dated 2013-10-11 and 1.1 dated 2014-09-30
Description: This package provides functions to compute a method for identifying the instar of Curculionid larvae from the observed distribution of the headcapsule size of mature larvae.
Author: Aurelie Siberchicot, Adrien Merville, Marie-Claude Bel-Venner and Samuel Venner
Maintainer: Aurelie Siberchicot
CINID-1.0/CINID/man/CINID-package.Rd |only
CINID-1.1/CINID/DESCRIPTION | 13 ++++++-------
CINID-1.1/CINID/MD5 | 12 ++++++------
CINID-1.1/CINID/NAMESPACE | 3 +++
CINID-1.1/CINID/man/cinid-package.Rd |only
CINID-1.1/CINID/man/cinid.plot.Rd | 6 +++---
CINID-1.1/CINID/man/cinid.table.Rd | 2 +-
CINID-1.1/CINID/man/s.oryzae.Rd | 2 +-
8 files changed, 20 insertions(+), 18 deletions(-)
Title: Linkage map construction using the MSTmap algorithm
Diff between ASMap versions 0.3 dated 2014-09-24 and 0.3-1 dated 2014-09-30
Description: Functions for (A)ccurate and (S)peedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred R/qtl objects. This includes extremely fast linkage map clustering and optimal marker ordering using MSTmap (see Wu et al.,2008).
Author: Julian Taylor
Maintainer: Julian Taylor
DESCRIPTION | 10 +++++-----
MD5 | 4 ++--
R/mstmap9.R | 10 ++++++----
3 files changed, 13 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-04 1.10
2012-02-23 1.0
Title: Web Application Framework for R
Diff between shiny versions 0.10.1 dated 2014-07-26 and 0.10.2 dated 2014-09-30
Description: Shiny makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive pre-built widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: RStudio, Inc.
Maintainer: Winston Chang
shiny-0.10.1/shiny/inst/www/shared/datatables/css/DT_bootstrap.css |only
shiny-0.10.1/shiny/inst/www/shared/datatables/css/images |only
shiny-0.10.1/shiny/inst/www/shared/datatables/js/DT_bootstrap.js |only
shiny-0.10.2/shiny/DESCRIPTION | 29
shiny-0.10.2/shiny/MD5 | 292 ++++-----
shiny-0.10.2/shiny/NAMESPACE | 12
shiny-0.10.2/shiny/NEWS | 45 +
shiny-0.10.2/shiny/R/app.R | 113 ++-
shiny-0.10.2/shiny/R/bootstrap.R | 17
shiny-0.10.2/shiny/R/cache.R | 21
shiny-0.10.2/shiny/R/fileupload.R | 39 -
shiny-0.10.2/shiny/R/graph.R | 8
shiny-0.10.2/shiny/R/html-deps.R | 14
shiny-0.10.2/shiny/R/map.R | 55 +
shiny-0.10.2/shiny/R/middleware.R | 27
shiny-0.10.2/shiny/R/priorityqueue.R | 14
shiny-0.10.2/shiny/R/progress.R |only
shiny-0.10.2/shiny/R/react.R | 46 -
shiny-0.10.2/shiny/R/reactives.R | 97 +--
shiny-0.10.2/shiny/R/server.R | 7
shiny-0.10.2/shiny/R/shiny.R | 85 +-
shiny-0.10.2/shiny/R/shinyui.R | 13
shiny-0.10.2/shiny/R/shinywrappers.R | 47 +
shiny-0.10.2/shiny/R/showcase.R | 5
shiny-0.10.2/shiny/R/stack.R |only
shiny-0.10.2/shiny/R/timer.R | 15
shiny-0.10.2/shiny/R/update-input.R | 6
shiny-0.10.2/shiny/R/utils.R | 248 +++++---
shiny-0.10.2/shiny/README.md | 4
shiny-0.10.2/shiny/inst/staticdocs/index.r | 5
shiny-0.10.2/shiny/inst/tests/test-bootstrap.r | 5
shiny-0.10.2/shiny/inst/tests/test-gc.r | 12
shiny-0.10.2/shiny/inst/tests/test-stack.R |only
shiny-0.10.2/shiny/inst/tests/test-url.R | 22
shiny-0.10.2/shiny/inst/www-dir/index.html | 1
shiny-0.10.2/shiny/inst/www/shared/datatables/css/dataTables.bootstrap.css |only
shiny-0.10.2/shiny/inst/www/shared/datatables/css/dataTables.extra.css |only
shiny-0.10.2/shiny/inst/www/shared/datatables/images |only
shiny-0.10.2/shiny/inst/www/shared/datatables/js/dataTables.bootstrap.js |only
shiny-0.10.2/shiny/inst/www/shared/datatables/js/jquery.dataTables.min.js | 308 +++++-----
shiny-0.10.2/shiny/inst/www/shared/datatables/upgrade1.10.txt |only
shiny-0.10.2/shiny/inst/www/shared/shiny.css | 41 +
shiny-0.10.2/shiny/inst/www/shared/shiny.js | 279 ++++++++-
shiny-0.10.2/shiny/inst/www/shared/slider/js/jquery.slider.min.js | 2
shiny-0.10.2/shiny/man/Progress.Rd |only
shiny-0.10.2/shiny/man/absolutePanel.Rd | 2
shiny-0.10.2/shiny/man/actionButton.Rd | 2
shiny-0.10.2/shiny/man/addResourcePath.Rd | 2
shiny-0.10.2/shiny/man/bootstrapPage.Rd | 2
shiny-0.10.2/shiny/man/checkboxGroupInput.Rd | 2
shiny-0.10.2/shiny/man/checkboxInput.Rd | 2
shiny-0.10.2/shiny/man/column.Rd | 2
shiny-0.10.2/shiny/man/conditionalPanel.Rd | 2
shiny-0.10.2/shiny/man/createWebDependency.Rd |only
shiny-0.10.2/shiny/man/dateInput.Rd | 2
shiny-0.10.2/shiny/man/dateRangeInput.Rd | 14
shiny-0.10.2/shiny/man/domains.Rd | 2
shiny-0.10.2/shiny/man/downloadButton.Rd | 2
shiny-0.10.2/shiny/man/downloadHandler.Rd | 2
shiny-0.10.2/shiny/man/exprToFunction.Rd | 2
shiny-0.10.2/shiny/man/fileInput.Rd | 7
shiny-0.10.2/shiny/man/fixedPage.Rd | 2
shiny-0.10.2/shiny/man/flowLayout.Rd | 2
shiny-0.10.2/shiny/man/fluidPage.Rd | 2
shiny-0.10.2/shiny/man/headerPanel.Rd | 2
shiny-0.10.2/shiny/man/helpText.Rd | 2
shiny-0.10.2/shiny/man/htmlOutput.Rd | 2
shiny-0.10.2/shiny/man/icon.Rd | 2
shiny-0.10.2/shiny/man/imageOutput.Rd | 2
shiny-0.10.2/shiny/man/inputPanel.Rd | 2
shiny-0.10.2/shiny/man/installExprFunction.Rd | 2
shiny-0.10.2/shiny/man/invalidateLater.Rd | 2
shiny-0.10.2/shiny/man/is.reactivevalues.Rd | 2
shiny-0.10.2/shiny/man/isolate.Rd | 2
shiny-0.10.2/shiny/man/knitr_methods.Rd | 2
shiny-0.10.2/shiny/man/mainPanel.Rd | 2
shiny-0.10.2/shiny/man/makeReactiveBinding.Rd | 2
shiny-0.10.2/shiny/man/markRenderFunction.Rd | 2
shiny-0.10.2/shiny/man/maskReactiveContext.Rd | 2
shiny-0.10.2/shiny/man/navbarPage.Rd | 2
shiny-0.10.2/shiny/man/navlistPanel.Rd | 2
shiny-0.10.2/shiny/man/numericInput.Rd | 2
shiny-0.10.2/shiny/man/observe.Rd | 2
shiny-0.10.2/shiny/man/outputOptions.Rd | 2
shiny-0.10.2/shiny/man/pageWithSidebar.Rd | 2
shiny-0.10.2/shiny/man/parseQueryString.Rd | 11
shiny-0.10.2/shiny/man/plotOutput.Rd | 2
shiny-0.10.2/shiny/man/plotPNG.Rd | 2
shiny-0.10.2/shiny/man/radioButtons.Rd | 2
shiny-0.10.2/shiny/man/reactive.Rd | 2
shiny-0.10.2/shiny/man/reactiveFileReader.Rd | 2
shiny-0.10.2/shiny/man/reactivePlot.Rd | 2
shiny-0.10.2/shiny/man/reactivePoll.Rd | 2
shiny-0.10.2/shiny/man/reactivePrint.Rd | 2
shiny-0.10.2/shiny/man/reactiveTable.Rd | 2
shiny-0.10.2/shiny/man/reactiveText.Rd | 2
shiny-0.10.2/shiny/man/reactiveTimer.Rd | 2
shiny-0.10.2/shiny/man/reactiveUI.Rd | 2
shiny-0.10.2/shiny/man/reactiveValues.Rd | 2
shiny-0.10.2/shiny/man/reactiveValuesToList.Rd | 2
shiny-0.10.2/shiny/man/registerInputHandler.Rd | 2
shiny-0.10.2/shiny/man/removeInputHandler.Rd | 2
shiny-0.10.2/shiny/man/renderDataTable.Rd | 8
shiny-0.10.2/shiny/man/renderImage.Rd | 2
shiny-0.10.2/shiny/man/renderPlot.Rd | 2
shiny-0.10.2/shiny/man/renderPrint.Rd | 2
shiny-0.10.2/shiny/man/renderTable.Rd | 2
shiny-0.10.2/shiny/man/renderText.Rd | 2
shiny-0.10.2/shiny/man/renderUI.Rd | 2
shiny-0.10.2/shiny/man/repeatable.Rd | 2
shiny-0.10.2/shiny/man/runApp.Rd | 2
shiny-0.10.2/shiny/man/runExample.Rd | 2
shiny-0.10.2/shiny/man/runUrl.Rd | 2
shiny-0.10.2/shiny/man/selectInput.Rd | 8
shiny-0.10.2/shiny/man/serverInfo.Rd | 6
shiny-0.10.2/shiny/man/session.Rd | 2
shiny-0.10.2/shiny/man/shiny-package.Rd | 2
shiny-0.10.2/shiny/man/shinyApp.Rd | 8
shiny-0.10.2/shiny/man/shinyDeprecated.Rd | 2
shiny-0.10.2/shiny/man/shinyServer.Rd | 2
shiny-0.10.2/shiny/man/shinyUI.Rd | 2
shiny-0.10.2/shiny/man/showReactLog.Rd | 2
shiny-0.10.2/shiny/man/sidebarLayout.Rd | 2
shiny-0.10.2/shiny/man/sidebarPanel.Rd | 2
shiny-0.10.2/shiny/man/sliderInput.Rd | 8
shiny-0.10.2/shiny/man/splitLayout.Rd | 2
shiny-0.10.2/shiny/man/stopApp.Rd | 2
shiny-0.10.2/shiny/man/submitButton.Rd | 2
shiny-0.10.2/shiny/man/tabPanel.Rd | 2
shiny-0.10.2/shiny/man/tableOutput.Rd | 2
shiny-0.10.2/shiny/man/tabsetPanel.Rd | 2
shiny-0.10.2/shiny/man/textInput.Rd | 2
shiny-0.10.2/shiny/man/textOutput.Rd | 2
shiny-0.10.2/shiny/man/titlePanel.Rd | 2
shiny-0.10.2/shiny/man/updateCheckboxGroupInput.Rd | 2
shiny-0.10.2/shiny/man/updateCheckboxInput.Rd | 2
shiny-0.10.2/shiny/man/updateDateInput.Rd | 2
shiny-0.10.2/shiny/man/updateDateRangeInput.Rd | 2
shiny-0.10.2/shiny/man/updateNumericInput.Rd | 2
shiny-0.10.2/shiny/man/updateRadioButtons.Rd | 2
shiny-0.10.2/shiny/man/updateSelectInput.Rd | 12
shiny-0.10.2/shiny/man/updateSliderInput.Rd | 2
shiny-0.10.2/shiny/man/updateTabsetPanel.Rd | 2
shiny-0.10.2/shiny/man/updateTextInput.Rd | 2
shiny-0.10.2/shiny/man/validate.Rd | 2
shiny-0.10.2/shiny/man/verbatimTextOutput.Rd | 2
shiny-0.10.2/shiny/man/verticalLayout.Rd | 2
shiny-0.10.2/shiny/man/wellPanel.Rd | 2
shiny-0.10.2/shiny/man/withMathJax.Rd | 2
shiny-0.10.2/shiny/man/withProgress.Rd |only
150 files changed, 1389 insertions(+), 815 deletions(-)
Title: R and Hive
Diff between RHive versions 2.0-0.1 dated 2014-08-27 and 2.0-0.2 dated 2014-09-30
Description: RHive is an R extension facilitating
distributed computing via HIVE query.
It provides an easy to use HQL like SQL
and R objects and functions in HQL.
Author: NexR
Maintainer: Bruce Shin
DESCRIPTION | 10 +++++-----
MD5 | 2 +-
2 files changed, 6 insertions(+), 6 deletions(-)
Title: Multiple Criteria Optimization Algorithms and Related Functions
Diff between mco versions 1.0-14 dated 2014-09-21 and 1.0-15 dated 2014-09-30
Description: Functions for multiple criteria optimization using genetic
algorithms and related test problems
Author: Olaf Mersmann [aut, cre],
Heike Trautmann [ctb],
Detlef Steuer [ctb],
Bernd Bischl [ctb],
Kalyanmoy Deb [cph]
Maintainer: Olaf Mersmann
DESCRIPTION | 10 ++++----
MD5 | 17 ++++++++-----
R/nsga2.R | 41 ++++++++++++++++++++-------------
build |only
man/normalizeFront.Rd | 4 +--
man/nsga2.Rd | 28 +++++++++++++++++++---
man/paretoFront.Rd | 2 -
src/nsga2.c | 62 ++++++++++++++++++++++++++++++++++++++++----------
tests |only
9 files changed, 118 insertions(+), 46 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Diff between MASS versions 7.3-34 dated 2014-08-21 and 7.3-35 dated 2014-09-30
Description: Functions and datasets to support Venables and Ripley,
'Modern Applied Statistics with S' (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Kurt Hornik [trl] (partial port ca 1998),
Albrecht Gebhardt [trl] (partial port ca 1998),
David Firth [ctb]
Maintainer: Brian Ripley
DESCRIPTION | 10 +-
MD5 | 10 +-
R/misc.R | 4
man/Null.Rd | 18 ++-
man/nlschools.Rd | 2
tests/Examples/MASS-Ex.Rout.save | 190 ++++++++++++++++++---------------------
6 files changed, 115 insertions(+), 119 deletions(-)
Title: Bootstrap Functions (originally by Angelo Canty for S)
Diff between boot versions 1.3-11 dated 2014-03-28 and 1.3-13 dated 2014-09-30
Description: functions and datasets for bootstrapping from the
book "Bootstrap Methods and Their Applications" by A. C. Davison and
D. V. Hinkley (1997, CUP).
Author: Angelo Canty [aut],
Brian Ripley [aut, trl, cre] (author of parallel support)
Maintainer: Brian Ripley
ChangeLog | 8 +++++
DESCRIPTION | 8 ++---
MD5 | 14 ++++-----
inst/po/en@quot/LC_MESSAGES/R-boot.mo |binary
man/abc.ci.Rd | 2 +
man/boot.Rd | 2 +
po/R-boot.pot | 4 +-
tests/Examples/boot-Ex.Rout.save | 50 +++++++++++++++++++++-------------
8 files changed, 56 insertions(+), 32 deletions(-)