Wed, 01 Oct 2014

Package testthat updated to version 0.9.1 with previous version 0.9 dated 2014-09-22

Title: Testthat code. Tools to make testing fun :)
Description: A testing package specifically tailored for R that's fun, flexible and easy to set up.
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham

Diff between testthat versions 0.9 dated 2014-09-22 and 0.9.1 dated 2014-10-01

 DESCRIPTION |    8 ++++----
 MD5         |    2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

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Package fume (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-02-11 1.0

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New package TFDEA with initial version 0.9.5
Package: TFDEA
Version: 0.9.5
Title: TFDEA (Technology Forecasting using DEA)
Author: ETA Research Group at Portland State University
Maintainer: Tom Shott
Depends: R (>= 3.0.0), lpSolveAPI
License: GPL-2
Description: The package implements the TFDEA algorithm for technology forecasting. Using DEA it forecasts the capabilities of future technologies. The package also includes basic DEA (Data Envelopment Analysis) and SDEA (Super-efficiency Data Envelopment Analysis). In additional the package includes some standard technology forecasting data sets.
URL: http://www.pdx.edu/extreme-technology-analytics/open-tfdea-r-package
Packaged: 2014-09-28 17:14:36 UTC; tshott
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 18:51:41

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Package shiny updated to version 0.10.2.1 with previous version 0.10.2 dated 2014-09-30

Title: Web Application Framework for R
Description: Shiny makes it incredibly easy to build interactive web applications with R. Automatic "reactive" binding between inputs and outputs and extensive pre-built widgets make it possible to build beautiful, responsive, and powerful applications with minimal effort.
Author: RStudio, Inc.
Maintainer: Winston Chang

Diff between shiny versions 0.10.2 dated 2014-09-30 and 0.10.2.1 dated 2014-10-01

 DESCRIPTION       |    6 +++---
 MD5               |   18 +++++++++---------
 NEWS              |    5 +++++
 R/app.R           |    2 +-
 R/run-url.R       |    6 +++---
 R/server.R        |    5 +++--
 man/runApp.Rd     |    3 ++-
 man/runExample.Rd |    2 +-
 man/runUrl.Rd     |    6 +++---
 man/shinyApp.Rd   |    2 +-
 10 files changed, 31 insertions(+), 24 deletions(-)

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New package measuRing with initial version 0.1
Package: measuRing
Type: Package
Title: Detection and Control of Tree-Ring Widths on Scanned Image Sections of Dendrochronological Samples
Version: 0.1
Date: 2014-10-01
Author: Wilson Lara , Carlos Sierra
Maintainer: Wilson Lara
Description: This package assists in the identification of ring borders on scanned image sections from dendrochronological samples. It processes the image section and computes luminance data from images producing a matrix of gray values and a time series of smoothed gray values. Luminance data is plotted on segmented images for users to perform both: visual identification of ring borders, or control of automatic detection. The package provides functions to visually include/exclude ring borders on the R graphical device, or automatically detect ring borders using a linear detection algorithm. This algorithm detects ring borders according to negative extreme values in the smoothed time-series of gray values.
License: GPL-3
Depends: tiff, zoo, pastecs
LazyData: TRUE
Packaged: 2014-10-01 09:36:57 UTC; wilar
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 17:32:39

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New package lazyeval with initial version 0.1.9
Package: lazyeval
Version: 0.1.9
Title: Lazy (Non-Standard) Evaluation
Description: A disciplined approach to non-standard evaluation.
Authors@R: as.person(c( "Hadley Wickham [aut,cre]", "RStudio [cph]" ))
License: GPL-3
LazyData: true
Depends: R (>= 3.1.0)
Suggests: knitr, rmarkdown (>= 0.2.65), microbenchmark
VignetteBuilder: knitr
Packaged: 2014-10-01 15:45:41 UTC; hadley
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-01 18:28:28

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Package GMCM updated to version 1.1 with previous version 1.0.1 dated 2014-05-29

Title: Fast estimation of Gaussian Mixture Copula Models
Description: Unsupervised Clustering and Meta-analysis using Gaussian Mixture Copula Models.
Author: Anders Ellern Bilgrau, Martin Boegsted, Poul Svante Eriksen
Maintainer: Anders Ellern Bilgrau

Diff between GMCM versions 1.0.1 dated 2014-05-29 and 1.1 dated 2014-10-01

 GMCM-1.0.1/GMCM/R/par2theta.R          |only
 GMCM-1.0.1/GMCM/R/theta2par.R          |only
 GMCM-1.1/GMCM/DESCRIPTION              |   19 +-
 GMCM-1.1/GMCM/MD5                      |  151 ++++++++++--------
 GMCM-1.1/GMCM/NAMESPACE                |   39 ++--
 GMCM-1.1/GMCM/R/EMAlgortihm.R          |   56 +++++-
 GMCM-1.1/GMCM/R/EStep.R                |   59 ++++++-
 GMCM-1.1/GMCM/R/GMCM-package.R         |only
 GMCM-1.1/GMCM/R/MStep.R                |    3 
 GMCM-1.1/GMCM/R/PseudoEMAlgorithm.R    |  114 ++++++++++++-
 GMCM-1.1/GMCM/R/RcppExports.R          |   46 +++++
 GMCM-1.1/GMCM/R/SimulateGMCMData.R     |   61 +++++++
 GMCM-1.1/GMCM/R/SimulateGMMData.R      |   28 ++-
 GMCM-1.1/GMCM/R/Uhat.R                 |   21 ++
 GMCM-1.1/GMCM/R/choose.theta.R         |   67 ++++++--
 GMCM-1.1/GMCM/R/colSds.R               |   23 ++
 GMCM-1.1/GMCM/R/cummean.R              |   16 +
 GMCM-1.1/GMCM/R/dgmcm.loglik.R         |   82 +++++++++
 GMCM-1.1/GMCM/R/dgmm.loglik.R          |    1 
 GMCM-1.1/GMCM/R/dgmm.loglik.marginal.R |   28 +--
 GMCM-1.1/GMCM/R/fit.full.GMCM.R        |  119 ++++++++++++--
 GMCM-1.1/GMCM/R/fit.meta.GMCM.R        |  124 ++++++++++++--
 GMCM-1.1/GMCM/R/full2meta.R            |   46 ++++-
 GMCM-1.1/GMCM/R/get.IDR2.R             |   62 +++++++
 GMCM-1.1/GMCM/R/get.idr.R              |   14 +
 GMCM-1.1/GMCM/R/get.prob.R             |    7 
 GMCM-1.1/GMCM/R/inv.logit.R            |    7 
 GMCM-1.1/GMCM/R/inv.rho.transform.R    |   12 -
 GMCM-1.1/GMCM/R/inv.tt.R               |    8 
 GMCM-1.1/GMCM/R/is.theta.R             |   55 ++++--
 GMCM-1.1/GMCM/R/logit.R                |   22 ++
 GMCM-1.1/GMCM/R/meta.gmcm.loglik.R     |   13 +
 GMCM-1.1/GMCM/R/meta2full.R            |    6 
 GMCM-1.1/GMCM/R/pgmm.marginal.R        |    2 
 GMCM-1.1/GMCM/R/qgmm.marginal.R        |    3 
 GMCM-1.1/GMCM/R/rho.transform.R        |   25 ++-
 GMCM-1.1/GMCM/R/rowSds.R               |only
 GMCM-1.1/GMCM/R/rtheta.R               |   58 +++++--
 GMCM-1.1/GMCM/R/theta2vector.R         |only
 GMCM-1.1/GMCM/R/tt.R                   |   47 +++++
 GMCM-1.1/GMCM/R/vector2theta.R         |only
 GMCM-1.1/GMCM/README.md                |   26 +--
 GMCM-1.1/GMCM/data/datalist            |only
 GMCM-1.1/GMCM/data/freshVsFrozen.RData |only
 GMCM-1.1/GMCM/data/u133VsExon.RData    |binary
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 GMCM-1.1/GMCM/inst/tests               |only
 GMCM-1.1/GMCM/man/EMAlgorithm.Rd       |   90 ++++------
 GMCM-1.1/GMCM/man/EStep.Rd             |   79 ++++-----
 GMCM-1.1/GMCM/man/GMCM-package.Rd      |  100 +++++++-----
 GMCM-1.1/GMCM/man/PseudoEMAlgorithm.Rd |  136 ++++++++--------
 GMCM-1.1/GMCM/man/SimulateGMCMData.Rd  |  100 +++++-------
 GMCM-1.1/GMCM/man/Uhat.Rd              |   53 ++----
 GMCM-1.1/GMCM/man/choose.theta.Rd      |   70 +++-----
 GMCM-1.1/GMCM/man/colSds.Rd            |only
 GMCM-1.1/GMCM/man/cummean.Rd           |   47 +----
 GMCM-1.1/GMCM/man/dgmcm.loglik.Rd      |  121 +++++++-------
 GMCM-1.1/GMCM/man/dmvnormal.Rd         |   76 ++++-----
 GMCM-1.1/GMCM/man/fit.full.GMCM.Rd     |  135 ++++++++--------
 GMCM-1.1/GMCM/man/fit.meta.GMCM.Rd     |  140 ++++++++--------
 GMCM-1.1/GMCM/man/freshVsFrozen.Rd     |only
 GMCM-1.1/GMCM/man/full2meta.Rd         |   83 +++++-----
 GMCM-1.1/GMCM/man/get.IDR.Rd           |  115 +++++++------
 GMCM-1.1/GMCM/man/is.theta.Rd          |   65 +++----
 GMCM-1.1/GMCM/man/logit.Rd             |   65 +++----
 GMCM-1.1/GMCM/man/rho.transform.Rd     |   72 +++-----
 GMCM-1.1/GMCM/man/rtheta.Rd            |   71 +++-----
 GMCM-1.1/GMCM/man/tt.Rd                |  102 ++++++------
 GMCM-1.1/GMCM/man/u133VsExon.Rd        |   57 ++++--
 GMCM-1.1/GMCM/src/GMCM.cpp             |  273 +++++++++++++++++++++------------
 GMCM-1.1/GMCM/src/RcppExports.cpp      |   50 ++++++
 GMCM-1.1/GMCM/tests                    |only
 73 files changed, 2285 insertions(+), 1289 deletions(-)

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Package FuzzyNumbers updated to version 0.3-5 with previous version 0.3-3 dated 2014-01-03

Title: Tools to deal with fuzzy numbers
Description: The FuzzyNumbers package provides S4 classes and methods to deal with fuzzy numbers. With them you can calculate any arithmetic operations (e.g. by using the Zadeh extension principle), perform approximation of arbitrary FNs by trapezoidal and piecewise linear FNs, prepare plots of FNs for publications, etc.
Author: Marek Gagolewski [aut, cre], Jan Caha [ctb]
Maintainer: Marek Gagolewski

Diff between FuzzyNumbers versions 0.3-3 dated 2014-01-03 and 0.3-5 dated 2014-10-01

 FuzzyNumbers-0.3-3/FuzzyNumbers/.Rinstignore                                |only
 FuzzyNumbers-0.3-5/FuzzyNumbers/DESCRIPTION                                 |   19 
 FuzzyNumbers-0.3-5/FuzzyNumbers/MD5                                         |  101 +-
 FuzzyNumbers-0.3-5/FuzzyNumbers/NAMESPACE                                   |    6 
 FuzzyNumbers-0.3-5/FuzzyNumbers/NEWS                                        |   11 
 FuzzyNumbers-0.3-5/FuzzyNumbers/R/FuzzyNumbers-package.R                    |   24 
 FuzzyNumbers-0.3-5/FuzzyNumbers/R/class-01-FuzzyNumber.R                    |    8 
 FuzzyNumbers-0.3-5/FuzzyNumbers/R/class-02-PowerFuzzyNumber.R               |    7 
 FuzzyNumbers-0.3-5/FuzzyNumbers/R/methods-piecewiseLinearApproximation.R    |  434 ++++-----
 FuzzyNumbers-0.3-5/FuzzyNumbers/build                                       |only
 FuzzyNumbers-0.3-5/FuzzyNumbers/inst/doc                                    |only
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/Arithmetic-methods.Rd                   |  328 +++---
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/DiscontinuousFuzzyNumber-class.Rd       |   77 -
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/DiscontinuousFuzzyNumber.Rd             |   78 -
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/Extract-methods.Rd                      |    8 
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/FuzzyNumber-class.Rd                    |  296 +++---
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/FuzzyNumber.Rd                          |  212 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/FuzzyNumbers-package.Rd                 |  177 +--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/PiecewiseLinearFuzzyNumber-class.Rd     |  179 +--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/PiecewiseLinearFuzzyNumber.Rd           |  165 +--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/PowerFuzzyNumber-class.Rd               |  101 +-
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/PowerFuzzyNumber.Rd                     |   77 -
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/TrapezoidalFuzzyNumber-class.Rd         |  142 +-
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/TrapezoidalFuzzyNumber.Rd               |  123 +-
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/TriangularFuzzyNumber.Rd                |  124 +-
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/alphaInterval-methods.Rd                |  453 ++++-----
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/alphacut-methods.Rd                     |  201 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/ambiguity-methods.Rd                    |  211 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/approxInvert.Rd                         |   22 
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/as.FuzzyNumber.Rd                       |  240 ++---
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/as.PiecewiseLinearFuzzyNumber.Rd        |  446 ++++-----
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/as.PowerFuzzyNumber.Rd                  |  471 ++++-----
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/as.TrapezoidalFuzzyNumber.Rd            |  475 +++++-----
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/as.character-methods.Rd                 |  388 ++++----
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/convertAlpha.Rd                         |    9 
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/convertSide.Rd                          |   15 
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/core-methods.Rd                         |  191 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/distance-methods.Rd                     |  224 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/evaluate-methods.Rd                     |  187 ++-
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/expectedInterval-methods.Rd             |  458 ++++-----
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/expectedValue-methods.Rd                |  211 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/fapply-methods.Rd                       |  180 +--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/integrateAlpha-methods.Rd               |  223 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/integrate_discont_val.Rd                |   21 
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/piecewiseLinearApproximation-methods.Rd |  279 ++---
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/plot-methods.Rd                         |  472 ++++-----
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/show-methods.Rd                         |  188 ++-
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/supp-methods.Rd                         |  191 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/trapezoidalApproximation-methods.Rd     |  280 ++---
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/value-methods.Rd                        |  216 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/weightedExpectedValue-methods.Rd        |  216 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/man/width-methods.Rd                        |  212 ++--
 FuzzyNumbers-0.3-5/FuzzyNumbers/vignettes                                   |only
 53 files changed, 4716 insertions(+), 4661 deletions(-)

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Package exsic updated to version 1.1.1 with previous version 1.0 dated 2013-03-26

Title: Convenience Functions for Botanists to Create Specimens Indices
Description: The package provides tools for botanists, plant taxonomists, curators of plant genebanks and perhaps other biological collections.
Author: Reinhard Simon [aut, cre] (CIP), David M. Spooner [aut] (USDA), International Potato Center [cph]
Maintainer: Reinhard Simon

Diff between exsic versions 1.0 dated 2013-03-26 and 1.1.1 dated 2014-10-01

 exsic-1.0/exsic/R/exsic-new.R                |only
 exsic-1.1.1/exsic/DESCRIPTION                |   27 
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 exsic-1.1.1/exsic/R/utils.R                  |  501 +++---
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 exsic-1.1.1/exsic/inst/samples/exsic.R       |only
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 exsic-1.1.1/exsic/man/exsic.Rd               |  148 -
 exsic-1.1.1/exsic/man/format.ASPT.Rd         |   56 
 exsic-1.1.1/exsic/man/format.NYBG.Rd         |   59 
 exsic-1.1.1/exsic/man/format.PK.Rd           |   57 
 exsic-1.1.1/exsic/man/format.SBMG.Rd         |   50 
 exsic-1.1.1/exsic/man/index.citations.Rd     |   61 
 exsic-1.1.1/exsic/man/index.collections.Rd   |   62 
 exsic-1.1.1/exsic/man/index.countries.Rd     |   57 
 exsic-1.1.1/exsic/man/index.species.Rd       |   57 
 exsic-1.1.1/exsic/man/index.species.short.Rd |   57 
 exsic-1.1.1/exsic/man/is.exsic.Rd            |   51 
 exsic-1.1.1/exsic/man/is.format.Rd           |   57 
 exsic-1.1.1/exsic/man/is.sortfilter.Rd       |   50 
 exsic-1.1.1/exsic/man/potato.Rd              |   44 
 exsic-1.1.1/exsic/man/prepare.table.Rd       |   70 
 exsic-1.1.1/exsic/man/read.exsic.Rd          |   74 
 exsic-1.1.1/exsic/man/section.exsic.Rd       |   59 
 exsic-1.1.1/exsic/man/sort.specs.Rd          |   24 
 exsic-1.1.1/exsic/man/strip.final.dot.Rd     |   59 
 exsic-1.1.1/exsic/man/write.exsic.Rd         |   56 
 35 files changed, 2096 insertions(+), 2031 deletions(-)

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Package ConConPiWiFun updated to version 0.4.3 with previous version 0.4.2 dated 2013-11-05

Title: Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
Description: Continuous convex piecewise linear (ccpl) resp. quadratic (ccpq) functions can be implemented with sorted breakpoints and slopes. This includes functions that are ccpl (resp. ccpq) on a convex set (i.e. an interval or a point) and infinite out of the domain. These functions can be very useful for a large class of optimisation problems. Efficient manipulation (such as log(N) insertion) of such data structure is obtained with map standard template library of C++ (that hides balanced trees). This package is a wrapper on such a class based on Rcpp modules.
Author: Robin Girard
Maintainer: Robin Girard

Diff between ConConPiWiFun versions 0.4.2 dated 2013-11-05 and 0.4.3 dated 2014-10-01

 DESCRIPTION                             |   10 
 MD5                                     |   42 
 NAMESPACE                               |    8 
 R/test                                  |only
 R/zzz.R                                 |  148 +-
 inst/include/ConConPiWiFun.h            |  118 -
 inst/include/convex_function_manip.hpp  |  160 +-
 inst/include/convex_functions_tools.hpp |  244 +--
 inst/include/cplfunction.hpp            | 2098 ++++++++++++++++----------------
 inst/include/cplfunctionvec.hpp         |  591 +++++----
 inst/include/cpqfunction.hpp            | 1226 +++++++++---------
 inst/include/cpqfunctionvec.hpp         |  283 ++--
 man/ConConPiWiFun-package.Rd            |   76 -
 man/cplfunction.Rd                      |  172 +-
 man/cplfunctionvec.Rd                   |  162 +-
 man/cpqfunction.Rd                      |  160 +-
 man/cpqfunctionvec.Rd                   |  130 -
 src/Makevars                            |    2 
 src/Makevars.win                        |    6 
 src/Modules.cc                          |   16 
 20 files changed, 2889 insertions(+), 2763 deletions(-)

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Package cna updated to version 1.0-0 with previous version 0.1-3 dated 2014-05-12

Title: A Package for Coincidence Analysis (CNA)
Description: Provides functions for performing Coincidence Analysis (CNA).
Author: Ambuehl, Mathias, Michael Baumgartner, Ruedi Epple, Alexis Kauffmann and Alrik Thiem
Maintainer: Alexis Kauffmann

Diff between cna versions 0.1-3 dated 2014-05-12 and 1.0-0 dated 2014-10-01

 cna-0.1-3/cna/man/cna-package.Rd   |only
 cna-1.0-0/cna/DESCRIPTION          |   20 -
 cna-1.0-0/cna/INDEX                |only
 cna-1.0-0/cna/MD5                  |   43 ++--
 cna-1.0-0/cna/NAMESPACE            |   11 -
 cna-1.0-0/cna/R/cna.r              |  168 +++++++++------
 cna-1.0-0/cna/R/cna_aux.r          |  271 ++++++++++++-------------
 cna-1.0-0/cna/R/condTbl.r          |  222 ++++++++++----------
 cna-1.0-0/cna/R/condition.r        |   18 -
 cna-1.0-0/cna/R/onAttach.R         |only
 cna-1.0-0/cna/R/truthTab.r         |   18 -
 cna-1.0-0/cna/data                 |only
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 cna-1.0-0/cna/man/cna.package.Rd   |only
 cna-1.0-0/cna/man/condTbl.Rd       |  121 ++++++++---
 cna-1.0-0/cna/man/condition.Rd     |  141 +++++++++----
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 cna-1.0-0/cna/man/truthTab.Rd      |  130 +++++++++---
 25 files changed, 1053 insertions(+), 505 deletions(-)

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New package checkpoint with initial version 0.3.2
Package: checkpoint
Title: Install Packages from Snapshots on the Checkpoint Server for Reproducibility
Description: The goal of checkpoint is to solve the problem of package reproducibility in R. Specifically, checkpoint allows you to install packages as they existed on CRAN on a specific snapshot date as if you had a CRAN time machine. To achieve reproducibility, the checkpoint() function installs the packages required or called by your project and scripts to a local library exactly as they existed at the specified point in time. Only those packages are available to your project, thereby avoiding any package updates that came later and may have altered your results. In this way, anyone using checkpoint's checkpoint() can ensure the reproducibility of your scripts or projects at any time. To create the snapshot archives, once a day (at midnight UTC) we refresh the Austria CRAN mirror, on the "Managed R Archived Network" server (http://mran.revolutionanalytics.com/). Immediately after completion of the rsync mirror process, we take a snapshot, thus creating the archive. Snapshot archives exist starting from 2014-09-17.
Version: 0.3.2
Date: 2014-10-01
Author: Revolution Analytics
Maintainer: Andrie de Vries
Copyright: Revolution Analytics
License: GPL-2
URL: https://github.com/RevolutionAnalytics/checkpoint
BugReports: http://www.github.com/RevolutionAnalytics/checkpoint/issues
Imports: knitr
Suggests: testthat(>= 0.9)
Packaged: 2014-10-01 16:25:38 UTC; Andrie de Vries
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 18:44:47

More information about checkpoint at CRAN
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Package miniCRAN updated to version 0.1-1 with previous version 0.1-0 dated 2014-09-16

Title: Tools to create an internally consistent, mini version of CRAN with selected packages only.
Description: Tools to create an internally consistent, mini version of CRAN with selected packages only.
Author: Revolution Analytics [aut], Andrie de Vries [aut, cre]
Maintainer: Andrie de Vries

Diff between miniCRAN versions 0.1-0 dated 2014-09-16 and 0.1-1 dated 2014-10-01

 DESCRIPTION                              |   10 +++----
 MD5                                      |   26 ++++++++++---------
 R/addPackages.R                          |    7 ++---
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Package kyotil updated to version 2014.10-5 with previous version 2014.4-1 dated 2014-04-01

Title: Utility Functions by Youyi & Krisz
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong , Krisztian Sebestyen
Maintainer: Youyi Fong

Diff between kyotil versions 2014.4-1 dated 2014-04-01 and 2014.10-5 dated 2014-10-01

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Package stylo updated to version 0.5.8-1 with previous version 0.5.8 dated 2014-09-03

Title: Functions for a variety of stylometric analyses
Description: A number of functions, supplemented by GUI, to perform various analyses in the field of computational stylistics, authorship attribution, etc.
Author: Maciej Eder, Jan Rybicki, Mike Kestemont
Maintainer: Maciej Eder

Diff between stylo versions 0.5.8 dated 2014-09-03 and 0.5.8-1 dated 2014-10-01

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Package RandomFields updated to version 3.0.44 with previous version 3.0.42 dated 2014-09-22

Title: Simulation and Analysis of Random Fields
Description: Simulation of Gaussian and extreme value random fields; conditional simulation; kriging; maximum likelihood estimation
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Peter Menck [aut], Sebastian Gross [aut], Ulrike Ober [ctb], Katharina Burmeister [ctb], Juliane Manitz [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather

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Package distrom updated to version 0.3-1 with previous version 0.2 dated 2014-01-31

Title: Distributed Multinomial Regression
Description: Estimation for a multinomial logistic regression factorized into independent Poisson log regressions. See the textir package for applications in multinomial inverse regression analysis of text.
Author: Matt Taddy
Maintainer: Matt Taddy

Diff between distrom versions 0.2 dated 2014-01-31 and 0.3-1 dated 2014-10-01

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Package deducorrect updated to version 1.3-5 with previous version 1.3-4 dated 2013-07-01

Title: deducorrect: Deductive correction, deductive imputation, and deterministic correction.
Description: A collection of methods for automated data cleaning where all actions are logged.
Author: Mark van der Loo, Edwin de Jonge, and Sander Scholtus
Maintainer: Mark van der Loo

Diff between deducorrect versions 1.3-4 dated 2013-07-01 and 1.3-5 dated 2014-10-01

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Package locfdr (with last version 1.1-7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2011-02-23 1.1-7
2007-11-03 1.1-6
2007-08-27 1.1-5
2007-04-04 1.1-4

Permanent link
Package highfrequency (with last version 0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-04-09 0.2
2012-12-26 0.1

Permanent link
Package nnclust (with last version 2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-01-20 2.2
2009-09-22 2.1

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Package TED updated to version 1.1 with previous version 1.0 dated 2014-05-10

Title: Turbulence time series Event Detection and classification
Description: TED performs event detection and classification in turbulence time series.
Author: Yanfei Kang, Danijel Belusic and Kate Smith-Miles
Maintainer: Yanfei Kang

Diff between TED versions 1.0 dated 2014-05-10 and 1.1 dated 2014-10-01

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New package steepness with initial version 0.2-2
Package: steepness
Version: 0.2-2
Date: 2014-29-09
Title: Testing Steepness of Dominance Hierarchies
Author: David Leiva & Han de Vries .
Maintainer: David Leiva
Depends: R (>= 3.1.0)
Description: steepness is a package that computes steepness as a property of dominance hierarchies. Steepness is defined as the absolute slope of the straight line fitted to the normalized David's scores. The normalized David's scores can be obtained on the basis of dyadic dominance indices corrected for chance or by means of proportions of wins. Given an observed sociomatrix, it computes hierarchy's steepness and estimates statistical significance by means of a randomization test.
License: GPL (>= 2)
Packaged: 2014-09-29 21:01:16 UTC; dleivaur
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-01 07:28:10

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New package SQDA with initial version 1.0
Package: SQDA
Type: Package
Title: Sparse Quadratic Discriminant Analysis
Version: 1.0
Date: 2014-09-19
Author: Jiehuan Sun
Maintainer: Jiehuan Sun
Depends: R (>= 2.10)
Imports: limma (>= 3.18.13), PDSCE (>= 1.2), mvtnorm (>= 0.9.99992)
Description: Sparse Quadratic Discriminant Analysis (SQDA) can be performed. In SQDA, the covariance matrix are assumed to be block-diagonal.And, for each block, sparsity assumption is imposed on the covariance matrix. It is useful in high-dimensional setting.
License: GPL-3
Packaged: 2014-09-30 18:53:29 UTC; jiehuansun
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-01 07:22:24

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New package repra with initial version 0.4.1
Package: repra
Title: Renewable Energy Probability Resource Assessment Tool (REPRA)
Version: 0.4.1
Date: 2014-09-30
Authors@R: as.person(c( "Eduardo Ibanez [aut, cre]", "National Renewable Energy Laboratory [cph]" ))
Description: This package includes methods to calculate resource adequacy metrics in power systems. These methods are based in the notion of loss-of-load probability (LOLP) and include the treatment of conventional and variable renewable generators.
License: MIT + file LICENSE
Depends: R(>= 3.1.0)
Imports: data.table, dplyr, Rcpp, reshape2, ggplot2, assertthat
Suggests: testthat, knitr
LinkingTo: Rcpp (>= 0.11.1)
VignetteBuilder: knitr
LazyData: TRUE
Packaged: 2014-09-30 16:21:53 UTC; eibanez
Author: Eduardo Ibanez [aut, cre], National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-10-01 07:06:42

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Package gamlr updated to version 1.12-1 with previous version 1.12 dated 2014-09-15

Title: Gamma Lasso Regression
Description: This package implements the gamma lasso algorithm for regularization paths corresponding to a range of non-convex cost functions between L0 and L1 norms. As much as possible, usage is analogous to that for the glmnet package (which does the same thing for penalization between L1 and L2 norms).
Author: Matt Taddy
Maintainer: Matt Taddy

Diff between gamlr versions 1.12 dated 2014-09-15 and 1.12-1 dated 2014-10-01

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Package FLSSS updated to version 2.0.1 with previous version 2.0 dated 2014-09-29

Title: Fixed Size Subset Sum Solution
Description: Solve an approximate Subset Sum Problem by introducing a recursive compression algorithm
Author: Charlie Wusuo Liu
Maintainer: Charlie Wusuo Liu

Diff between FLSSS versions 2.0 dated 2014-09-29 and 2.0.1 dated 2014-10-01

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Package EpiModel updated to version 1.1 with previous version 1.0.2 dated 2014-08-30

Title: Mathematical Modeling of Infectious Disease
Description: Tools for simulating mathematical models of infectious disease. Epidemic model classes include deterministic compartmental models, stochastic individual contact models, and stochastic network models. Disease types include SI, SIR, and SIS epidemics with and without demography, with tools available for expansion to model complex epidemic processes.
Author: Samuel Jenness [cre, aut], Steven M. Goodreau [aut], Martina Morris [aut], Li Wang [ctb]
Maintainer: Samuel Jenness

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 man/summary.icm.Rd                |    2 
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 tests/testthat/test-netattr.R     |    6 
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 tests/testthat/test-newicm.R      |only
 tests/testthat/test-newnet.R      |only
 124 files changed, 2560 insertions(+), 2047 deletions(-)

More information about EpiModel at CRAN
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Package eaf updated to version 1.06 with previous version 1.05 dated 2013-02-20

Title: Plots of the Empirical Attainment Function
Description: Plots of the empirical attainment function for two objectives.
Author: Carlos Fonseca, Luis Paquete, Thomas Stützle, Manuel López-Ibáñez and Marco Chiarandini.
Maintainer: Manuel López-Ibáñez

Diff between eaf versions 1.05 dated 2013-02-20 and 1.06 dated 2014-10-01

 eaf-1.05/eaf/doc                             |only
 eaf-1.06/eaf/DESCRIPTION                     |   14 -
 eaf-1.06/eaf/MD5                             |   33 ++--
 eaf-1.06/eaf/NEWS                            |   19 ++
 eaf-1.06/eaf/R/eaf.R                         |   99 +++++++------
 eaf-1.06/eaf/inst/scripts/eaf/eaf.c          |   30 ++--
 eaf-1.06/eaf/inst/scripts/eaf/eaf.h          |    5 
 eaf-1.06/eaf/inst/scripts/eaf/eaf_main.c     |   54 ++++++-
 eaf-1.06/eaf/inst/scripts/eaf/svn_version    |    2 
 eaf-1.06/eaf/inst/scripts/eafdiff/eafdiff.pl |   54 ++++---
 eaf-1.06/eaf/inst/scripts/eafplot/eafplot.pl |  191 +++++++++++++++++----------
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 eaf-1.06/eaf/man/eafdiffplot.Rd              |    5 
 eaf-1.06/eaf/man/eafplot.Rd                  |    2 
 eaf-1.06/eaf/src/eaf.c                       |   30 ++--
 eaf-1.06/eaf/src/eaf.h                       |    5 
 eaf-1.06/eaf/src/eaf_io_priv.h               |   24 +--
 17 files changed, 358 insertions(+), 223 deletions(-)

More information about eaf at CRAN
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