Title: Smoothing Splines for Large Samples
Diff between bigsplines versions 1.0-3 dated 2014-08-26 and 1.0-4 dated 2014-10-03
Description: Fits smoothing spline regression models using scalable algorithms designed for large samples. Five marginal spline types are supported: cubic, different cubic, cubic periodic, cubic thin-plate, and nominal. Parametric predictors are also supported. Response can be Gaussian or non-Gaussian: Binomial, Poisson, Gamma, Inverse Gaussian, or Negative Binomial.
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
ChangeLog | 14 ++++++++++++++
DESCRIPTION | 10 +++++-----
MD5 | 46 +++++++++++++++++++++++-----------------------
R/predict.ssa.R | 33 ++++++++++++++-------------------
R/predict.ssg.R | 25 ++++++++++++-------------
R/predict.ssp.R | 25 +++++++++++--------------
man/bigspline.Rd | 4 ++--
man/bigsplines-package.Rd | 4 ++--
man/bigssa.Rd | 4 ++--
man/bigssg.Rd | 4 ++--
man/bigssp.Rd | 4 ++--
man/bigtps.Rd | 4 ++--
man/binsamp.Rd | 2 +-
man/imagebar.Rd | 2 +-
man/makessa.Rd | 4 ++--
man/makessg.Rd | 4 ++--
man/makessp.Rd | 4 ++--
man/predict.css.Rd | 4 ++--
man/predict.ssa.Rd | 14 ++++++++------
man/predict.ssg.Rd | 14 ++++++++------
man/predict.ssp.Rd | 14 ++++++++------
man/predict.tps.Rd | 4 ++--
man/print.Rd | 2 +-
man/summary.Rd | 2 +-
24 files changed, 129 insertions(+), 118 deletions(-)
Title: Useful tools for structural equation modeling.
Diff between semTools versions 0.4-0 dated 2013-05-03 and 0.4-6 dated 2014-10-03
Description: This package provide useful tools for structural equation modeling analysis. Note that the OpenMx package can be obtained from the following URL: http://openmx.psyc.virginia.edu/
Author: Sunthud Pornprasertmanit [aut, cre],
Patrick Miller [aut],
Alexander Schoemann [aut],
Yves Rosseel [aut],
Corbin Quick [ctb],
Mauricio Garnier-Villarreal [ctb],
James Selig [ctb],
Aaron Boulton [ctb],
Kristopher Preacher [ctb],
Donna Coffman [ctb],
Mijke Rhemtulla [ctb],
Alexander Robitzsch [ctb],
Craig Enders [ctb],
Ruber Arslan [ctb],
Bell Clinton [ctb],
Pavel Panko [ctb],
Edgar Merkle [ctb],
Terry Jorgensen [ctb],
Steven Chesnut [ctb]
Maintainer: Sunthud Pornprasertmanit
DESCRIPTION | 85 ++++++++------
MD5 | 163 ++++++++++++++++-----------
NAMESPACE | 20 ++-
R/NET.R |only
R/auxiliary.R | 94 ++++++++++++----
R/compareFit.R | 6 -
R/efa.R | 69 +++++++++--
R/fitIndices.R | 2
R/fitOpenMx.R | 68 +++++------
R/fmi.R | 6 -
R/imposeStart.R | 2
R/indProd.R | 19 ++-
R/kd.R |only
R/lisrel2lavaan.R | 12 --
R/longInvariance.R | 29 +++-
R/measurementInvariance.R | 192 ++++++++++++++++++--------------
R/measurementInvarianceCat.R |only
R/miPowerFit.R | 2
R/missingBootstrap.R |only
R/monteCarloMed.R | 17 ++
R/mvrnonnorm.R |only
R/parcelAllocation.R | 15 +-
R/partialInvariance.R |only
R/partialInvarianceCat.R |only
R/powerAnalysisSS.R |only
R/quark.R |only
R/reliability.R | 229 +++++++++++++++++++++++++++++++++++++--
R/runMI.R | 147 ++++++++-----------------
R/singleParamTest.R |only
R/wald.R | 15 +-
build |only
data/datCat.rda |only
inst |only
man/BootMiss-class.Rd |only
man/EFA-class.Rd | 4
man/FitDiff-class.Rd | 2
man/Net-class.Rd |only
man/SSpower.Rd |only
man/auxiliary.Rd | 4
man/bsBootMiss.Rd |only
man/clipboard.Rd | 2
man/combinequark.Rd |only
man/compareFit.Rd | 2
man/datCat.Rd |only
man/efaUnrotate.Rd | 12 +-
man/findRMSEApower.Rd | 2
man/findRMSEApowernested.Rd | 2
man/findRMSEAsamplesize.Rd | 2
man/findRMSEAsamplesizenested.Rd | 2
man/fitMeasuresMx.Rd | 2
man/fmi.Rd | 3
man/impliedFactorStat.Rd | 2
man/imposeStart.Rd | 2
man/indProd.Rd | 16 +-
man/kd.Rd |only
man/kurtosis.Rd | 2
man/lavaanStar-class.Rd | 6 -
man/lisrel2lavaan.Rd | 2
man/loadingFromAlpha.Rd | 2
man/longInvariance.Rd | 5
man/mardiaKurtosis.Rd | 2
man/mardiaSkew.Rd | 2
man/maximalRelia.Rd |only
man/measurementInvariance.Rd | 9 -
man/measurementInvarianceCat.Rd |only
man/miPowerFit.Rd | 6 -
man/monteCarloMed.Rd | 14 +-
man/moreFitIndices.Rd | 6 -
man/mvrnonnorm.Rd |only
man/net.Rd |only
man/nullMx.Rd | 2
man/parcelAllocation.Rd | 12 +-
man/partialInvariance.Rd |only
man/plotProbe.Rd | 5
man/plotRMSEAdist.Rd | 2
man/plotRMSEApower.Rd | 2
man/plotRMSEApowernested.Rd | 2
man/probe2WayMC.Rd | 2
man/probe2WayRC.Rd | 4
man/probe3WayMC.Rd | 5
man/probe3WayRC.Rd | 7 -
man/quark.Rd |only
man/reliability.Rd | 30 +++--
man/reliabilityL2.Rd | 4
man/residualCovariate.Rd | 4
man/rotate.Rd | 4
man/runMI.Rd | 15 +-
man/saturateMx.Rd | 2
man/singleParamTest.Rd |only
man/skew.Rd | 2
man/splitSample.rd | 2
man/standardizeMx.Rd | 2
man/tukeySEM.rd | 2
man/wald.Rd | 3
vignettes |only
95 files changed, 915 insertions(+), 505 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-08-26 1.1-1
2007-07-28 1.0-5
2007-07-24 1.0-2
2007-07-23 1.0.0
Title: Intermittent Time Series Forecasting
Diff between tsintermittent versions 1.3 dated 2014-08-04 and 1.4 dated 2014-10-03
More information about tsintermittent at CRAN
Description: This package contains functions for analysing and forecasting intermittent demand/slow moving items time series.
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes
ChangeLog | 5 +++++
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
R/crost.R | 5 +++++
R/imapa.R | 33 +++++++++++++++++++++++----------
R/simID.R | 2 +-
man/simID.Rd | 2 +-
7 files changed, 45 insertions(+), 22 deletions(-)
Permanent link
Title: Spatial and Space-Time Point Pattern Analysis
Diff between splancs versions 2.01-34 dated 2013-09-01 and 2.01-36 dated 2014-10-03
Description: Spatial and Space-Time Point Pattern Analysis Functions
Author: Roger Bivand [cre],
Barry Rowlingson [aut],
Peter Diggle [aut],
Giovanni Petris [ctb],
Stephen Eglen [ctb]
Maintainer: Roger Bivand
ChangeLog | 278 +++++++++++++++++++++++++++++++++++++--------------------
DESCRIPTION | 16 ++-
MD5 | 10 +-
R/inout.S | 5 -
inst/ChangeLog | 278 +++++++++++++++++++++++++++++++++++++--------------------
src/inpip.f | 8 -
6 files changed, 392 insertions(+), 203 deletions(-)
Title: Robust periodogram methods for irregularly sampled time series
and robust periodicity detection methods
Diff between RobPer versions 1.1 dated 2014-06-24 and 1.2 dated 2014-10-03
Description: Package to calculate periodograms based on (robustly) fitting periodic functions to light curves (irregularly observed time series, possibly with measurement accuracies, occurring in astroparticle physics). Three main functions are included: RobPer calculates the periodogram. Outlying periodogram bars (indicating a period) can be detected with betaCvMfit. Artificial light curves can be generated using the function tsgen. For more details see Thieler, Fried and Rathjens (2013).
Author: Anita M. Thieler, Jonathan Rathjens and Roland Fried, with contributions from Brenton R. Clarke, Uwe Ligges, Matias Salibian-Barrera, Gert Willems and Victor Yohai
Maintainer: Jonathan Rathjens
RobPer-1.1/RobPer/tests/tests.Rout.save |only
RobPer-1.1/RobPer/vignettes/images |only
RobPer-1.2/RobPer/DESCRIPTION | 12
RobPer-1.2/RobPer/MD5 | 49 +--
RobPer-1.2/RobPer/NAMESPACE | 11
RobPer-1.2/RobPer/build/vignette.rds |binary
RobPer-1.2/RobPer/data |only
RobPer-1.2/RobPer/inst/doc/RobPer_Vignette.R | 350 +++++++++++++++++++--
RobPer-1.2/RobPer/inst/doc/RobPer_Vignette.Rnw | 388 ++++++++++++++++++------
RobPer-1.2/RobPer/inst/doc/RobPer_Vignette.pdf |binary
RobPer-1.2/RobPer/inst/extdata |only
RobPer-1.2/RobPer/man/Mrk421.Rd |only
RobPer-1.2/RobPer/man/Mrk501.Rd |only
RobPer-1.2/RobPer/man/RobPer-package.rd | 4
RobPer-1.2/RobPer/man/star_groj0422.32.Rd |only
RobPer-1.2/RobPer/tests/tests.R | 8
RobPer-1.2/RobPer/vignettes/RobPer_Art.bib | 20 +
RobPer-1.2/RobPer/vignettes/RobPer_Vignette.Rnw | 388 ++++++++++++++++++------
RobPer-1.2/RobPer/vignettes/subfigure.sty |only
19 files changed, 982 insertions(+), 248 deletions(-)
Title: Multiple Aggregation Prediction Algorithm
Diff between MAPA versions 1.7 dated 2014-07-31 and 1.8 dated 2014-10-03
Description: This package contains functions and wrappers for using the Multiple Aggregation Prediction Algorithm, proposed by Kourentzes et al. (2014).
Author: Nikolaos Kourentzes and Fotios Petropoulos
Maintainer: Nikolaos Kourentzes
ChangeLog | 3 +++
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/MAPA.R | 40 +++++++++++++++++++++++++++-------------
4 files changed, 37 insertions(+), 20 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial
trading strategies.
Author: Jeffrey A. Ryan
Maintainer: ORPHANED
Diff between quantmod versions 0.4-0 dated 2013-01-20 and 0.4-1 dated 2014-10-03
DESCRIPTION | 21 ++-- MD5 | 48 +++++----- NAMESPACE | 18 ++- R/TA.R | 26 ++--- R/addAroon.R | 43 ++++----- R/addCLV.R | 24 ++--- R/addCMF.R | 12 +- R/addCMO.R | 12 +- R/addChaikin.R | 49 ++++------ R/addEMV.R | 28 ++---- R/addKST.R | 26 ++--- R/addMFI.R | 22 ++-- R/addOBV.R | 22 ++-- R/addSMI.R | 20 +--- R/addTA.R | 222 ++++++++++++++++++++---------------------------- R/addTDI.R | 22 ++-- R/addVolatility.R | 22 ++-- R/addWPR.R | 12 +- R/addZigZag.R | 25 ++--- R/add_Last.R | 16 +-- R/chart_Series.R | 122 +++++++++++++------------- R/getSymbols.R | 118 +++++++++++++------------ R/getSymbols.skeleton.R | 10 +- R/newTA.R | 25 ++--- R/reChart.R | 40 ++++---- 25 files changed, 477 insertions(+), 528 deletions(-)
Title: Nested Block Designs for Unstructured Treatments
Diff between blocksdesign versions 1.0 dated 2014-09-29 and 1.1 dated 2014-10-03
Description: Nested block designs for unstructured treatment sets where blocks
can be repeatedly nested and treatments can have different levels of
replication. Blocks strata are optimized hierarchically with each set of
nested blocks optimized within the levels of the preceding set. Block sizes
are equal if the number of blocks exactly divides the number of plots,
otherwise they differ by at most one plot. The design output is a data
table giving a randomised allocation of treatments to blocks together with
a plan table showing treatments in blocks and a set of blocks-by-treatments
incidence matrices, one for each blocks stratum.
Author: R. N. Edmondson
Maintainer: Rodney Edmondson
DESCRIPTION | 9 +-
MD5 | 10 +--
R/blocks.r | 149 ++++++++++++++++++++++-----------------------
inst/doc/blocksdesign.Rmd | 10 ++-
inst/doc/blocksdesign.html | 3
vignettes/blocksdesign.Rmd | 10 ++-
6 files changed, 102 insertions(+), 89 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-07 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-28 1.0.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-18 0.1-2
2013-03-11 0.1-1
2012-08-24 0.1
Title: SIMulated Structural Equation Modeling.
Diff between simsem versions 0.5-3 dated 2013-03-17 and 0.5-8 dated 2014-10-03
Description: This package can be used to generate data using the structural equation modeling framework. This package is tailored to use those simulated data for various purposes, such as model fit evaluation, power analysis, or missing data handling and planning. Note that the OpenMx package can be obtained from the following URL: http://openmx.psyc.virginia.edu/
Author: Sunthud Pornprasertmanit [aut, cre],
Patrick Miller [aut],
Alexander Schoemann [aut],
Corbin Quick [ctb],
Terry Jorgensen [ctb]
Maintainer: Sunthud Pornprasertmanit
DESCRIPTION | 37 +-
MD5 | 200 +++++++--------
NAMESPACE | 3
R/analyze.R | 24 -
R/bind.R | 152 -----------
R/createData.R | 104 ++++++--
R/drawParam.R | 100 -------
R/find.R | 3
R/generate.R | 549 +++++++++++++++++++++++++++++--------------
R/getCutoff.R | 6
R/getPowerCoverage.R | 12
R/likRatioFit.R | 2
R/model.R | 249 -------------------
R/openMx.R | 23 +
R/pValue.R | 6
R/pValueNested.R | 2
R/pValueNonNested.R | 2
R/plotCutoff.R | 8
R/plotPowerCoverage.R | 11
R/sim.R | 176 +++++++++----
R/summary-methods.R | 3
R/summarySimResult.R | 10
R/zzz.R | 1
man/SimDataDist-class.Rd | 2
man/SimMatrix-class.Rd | 2
man/SimMissing-class.Rd | 6
man/SimResult-class.Rd | 2
man/SimSem-class.Rd | 4
man/SimVector-class.Rd | 4
man/analyze.Rd | 4
man/anova.Rd | 4
man/bind.Rd | 4
man/bindDist.Rd | 2
man/coef.Rd | 2
man/combineSim.Rd | 4
man/continuousCoverage.Rd | 17 -
man/continuousPower.Rd | 7
man/createData.Rd | 12
man/draw.Rd | 5
man/estmodel.Rd | 19 -
man/exportData.Rd | 16 -
man/findCoverage.Rd | 2
man/findFactorIntercept.Rd | 2
man/findFactorMean.Rd | 2
man/findFactorResidualVar.Rd | 2
man/findFactorTotalCov.Rd | 2
man/findFactorTotalVar.Rd | 2
man/findIndIntercept.Rd | 2
man/findIndMean.Rd | 2
man/findIndResidualVar.Rd | 2
man/findIndTotalVar.Rd | 2
man/findPossibleFactorCor.Rd | 2
man/findPower.Rd | 2
man/findRecursiveSet.Rd | 2
man/generate.Rd | 15 -
man/getCIwidth.Rd | 2
man/getCoverage.Rd | 2
man/getCutoff.Rd | 2
man/getCutoffNested.Rd | 5
man/getCutoffNonNested.Rd | 2
man/getExtraOutput.Rd | 2
man/getPopulation.Rd | 2
man/getPower.Rd | 2
man/getPowerFit.Rd | 2
man/getPowerFitNested.Rd | 8
man/getPowerFitNonNested.Rd | 2
man/imposeMissing.Rd | 79 +++---
man/inspect.Rd | 2
man/likRatioFit.Rd | 8
man/miss.Rd | 6
man/model.Rd | 13 -
man/modelLavaan.Rd | 3
man/multipleAllEqual.Rd | 2
man/pValue.Rd | 2
man/pValueNested.Rd | 8
man/pValueNonNested.Rd | 8
man/plotCIwidth.Rd | 7
man/plotCoverage.Rd | 7
man/plotCutoff.Rd | 7
man/plotCutoffNested.Rd | 2
man/plotCutoffNonNested.Rd | 2
man/plotDist.Rd | 2
man/plotLogitMiss.Rd | 2
man/plotMisfit.Rd | 2
man/plotPower.Rd | 7
man/plotPowerFit.Rd | 17 -
man/plotPowerFitNested.Rd | 22 +
man/plotPowerFitNonNested.Rd | 2
man/popDiscrepancy.Rd | 2
man/popMisfitMACS.Rd | 2
man/rawDraw.Rd | 2
man/setPopulation.Rd | 5
man/sim.Rd | 54 +++-
man/summaryConverge.Rd | 2
man/summaryFit.Rd | 4
man/summaryMisspec.Rd | 2
man/summaryParam.Rd | 6
man/summaryPopulation.Rd | 2
man/summarySeed.Rd | 2
man/summaryShort.Rd | 2
man/summaryTime.Rd | 2
101 files changed, 1041 insertions(+), 1127 deletions(-)
Title: HIBAG -- HLA Genotype Imputation with Attribute Bagging
Diff between HIBAG versions 1.2.3 dated 2014-03-06 and 1.2.4 dated 2014-10-03
Description: HIBAG is a state of the art software package for imputing HLA
types using SNP data, and it uses the R statistical programming language.
HIBAG can be used by researchers with published parameter estimates instead
of requiring access to large training sample datasets. It combines the
concepts of attribute bagging, an ensemble classifier method, with
haplotype inference for SNPs and HLA types. Attribute bagging is a
technique which improves the accuracy and stability of classifier
ensembles using bootstrap aggregating and random variable selection.
Author: Xiuwen Zheng, Bruce S. Weir
Maintainer: Xiuwen Zheng
DESCRIPTION | 13 +-
MD5 | 27 ++---
NEWS | 7 +
R/HIBAG.r | 218 +++++++++++++++++++++++++++++++++++++++----
build/vignette.rds |binary
inst/doc/HIBAG_Tutorial.Rnw | 18 +++
inst/doc/HIBAG_Tutorial.pdf |binary
man/HIBAG-package.Rd | 2
man/hlaBED2Geno.Rd | 2
man/hlaGDS2Geno.Rd |only
man/hlaLociInfo.Rd | 4
src/LibHLA.cpp | 4
src/LibHLA.h | 2
src/StructHLA.h | 2
vignettes/HIBAG_Tutorial.Rnw | 18 +++
15 files changed, 274 insertions(+), 43 deletions(-)