Title: R Code for MARK Analysis
Diff between RMark versions 2.1.8 dated 2014-06-26 and 2.1.9 dated 2014-10-06
Description: This package provides an interface to the
software package MARK developed by Gary White. MARK is
freely available at
(http://www.phidot.org/software/mark/download/) but is
not open source.
Author: Jeff Laake
Maintainer: Jeff Laake
DESCRIPTION | 10 +-
MD5 | 192 ++++++++++++++++++++--------------------
NAMESPACE | 2
NEWS | 9 +
R/make.design.data.R | 8 +
R/make.mark.model.R | 25 ++---
R/process.data.R | 2
inst/parameters.txt | 42 ++++----
man/ABeginnersGuide.Rd | 2
man/Blackduck.Rd | 2
man/Donovan.7.Rd | 2
man/Donovan.8.Rd | 2
man/IELogitNormalMR.Rd | 2
man/LogitNormalMR.Rd | 2
man/NicholsMSOccupancy.Rd | 2
man/PIMS.Rd | 2
man/PoissonMR.Rd | 2
man/Poisson_twoMR.Rd | 2
man/RDOccupancy.Rd | 2
man/RDSalamander.Rd | 2
man/TransitionMatrix.Rd | 2
man/Whatsnew.Rd | 2
man/add.design.data.Rd | 2
man/adjust.parameter.count.Rd | 2
man/adjust.value.Rd | 6 -
man/brownie.Rd | 2
man/cleanup.Rd | 2
man/collect.model.names.Rd | 2
man/collect.models.Rd | 2
man/compute.design.data.Rd | 2
man/compute.link.Rd | 2
man/compute.links.from.reals.Rd | 2
man/compute.real.Rd | 2
man/convert.inp.Rd | 2
man/convert.link.to.real.Rd | 2
man/covariate.predictions.Rd | 12 +-
man/crdms.Rd | 2
man/create.mark.mcmc.Rd | 2
man/create.model.list.Rd | 2
man/deer.Rd | 2
man/deltamethod.special.Rd | 2
man/deriv_inverse.link.Rd | 2
man/dipper.Rd | 2
man/edwards.eberhardt.Rd | 2
man/example.data.Rd | 2
man/export.MARK.Rd | 2
man/export.chdata.Rd | 2
man/export.model.Rd | 2
man/extract.indices.Rd | 2
man/extract.mark.output.Rd | 2
man/fill.covariates.Rd | 2
man/find.covariates.Rd | 2
man/get.link.Rd | 2
man/get.real.Rd | 2
man/import.chdata.Rd | 2
man/inverse.link.Rd | 2
man/killdeer.Rd | 2
man/larksparrow.Rd | 2
man/load.model.Rd | 2
man/make.design.data.Rd | 2
man/make.mark.model.Rd | 2
man/make.time.factor.Rd | 2
man/mallard.Rd | 2
man/mark.Rd | 2
man/mark.wrapper.Rd | 2
man/mark.wrapper.parallel.Rd | 2
man/mata.wald.Rd | 16 +--
man/merge.mark.Rd | 2
man/merge_design.covariates.Rd | 2
man/model.average.Rd | 2
man/model.average.list.Rd | 12 +-
man/model.average.marklist.Rd | 12 +-
man/model.table.Rd | 2
man/mstrata.Rd | 2
man/popan.derived.Rd | 20 ++--
man/print.mark.Rd | 2
man/process.data.Rd | 2
man/read.mark.binary.Rd | 2
man/release.gof.Rd | 2
man/remove.mark.Rd | 2
man/rerun.mark.Rd | 2
man/robust.Rd | 2
man/run.mark.model.Rd | 2
man/run.models.Rd | 2
man/salamander.Rd | 2
man/setup.model.Rd | 2
man/setup.parameters.Rd | 2
man/splitCH.Rd | 2
man/store.Rd | 2
man/strip.comments.Rd | 2
man/summary.mark.Rd | 6 -
man/summary_ch.Rd | 2
man/valid.parameters.Rd | 2
man/var.components.Rd | 2
man/var.components.reml.Rd | 2
man/weta.Rd | 2
man/wwdo.popan.Rd | 2
97 files changed, 276 insertions(+), 262 deletions(-)
Title: Renewable Energy Probability Resource Assessment Tool (REPRA)
Diff between repra versions 0.4.1 dated 2014-10-01 and 0.4.2 dated 2014-10-06
Description: This package includes methods to calculate resource adequacy
metrics in power systems. These methods are based in the notion of
loss-of-load probability (LOLP) and include the treatment of conventional
and variable renewable generators.
Author: Eduardo Ibanez [aut, cre],
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez
DESCRIPTION | 11 +++++++----
MD5 | 20 ++++++++++----------
R/auxiliary.R | 11 ++++++-----
R/calculate_elcc.R | 2 +-
R/calculate_metrics.R | 2 +-
R/capacity_value.R | 4 ++--
R/sliding_window.R | 2 +-
inst/doc/repra.Rmd | 2 +-
inst/doc/repra.html | 6 +++---
inst/doc/sliding_window.Rmd | 4 ++--
inst/doc/sliding_window.html | 4 ++--
11 files changed, 36 insertions(+), 32 deletions(-)
Title: Fast estimation of Gaussian Mixture Copula Models
Diff between GMCM versions 1.1 dated 2014-10-01 and 1.1.1 dated 2014-10-06
Description: Unsupervised Clustering and Meta-analysis using Gaussian Mixture
Copula Models.
Author: Anders Ellern Bilgrau, Martin Boegsted, Poul Svante Eriksen
Maintainer: Anders Ellern Bilgrau
DESCRIPTION | 6 +++---
MD5 | 10 +++++-----
R/SimulateGMMData.R | 5 +++--
README.md | 2 +-
inst/NEWS.Rd | 6 ++++++
inst/tests/test-qgmm.marginal.R | 2 +-
6 files changed, 19 insertions(+), 12 deletions(-)
Title: Some further GIS capabilities for R
Diff between GISTools versions 0.7-3 dated 2014-08-15 and 0.7-4 dated 2014-10-06
Description: Some mapping and spatial data manipulation tools - in particular
drawing choropleth maps with nice looking legends, and aggregation of point
data to polygons.
Author: Chris Brunsdon and Hongyan Chen
Maintainer: Chris Brunsdon
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/choro.legend.R | 25 +++++++++++++------------
man/choro.legend.Rd | 6 ++++--
4 files changed, 24 insertions(+), 21 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Diff between embryogrowth versions 5.0 dated 2014-08-15 and 5.1 dated 2014-10-06
Description: Tools to analyze the thermal reaction norm of embryo growth
Author: Marc Girondot
Maintainer: Marc Girondot
embryogrowth-5.0/embryogrowth/R/ShinyEmbryogrowth.R |only
embryogrowth-5.0/embryogrowth/R/embryogrowth_Script_MCMC.r |only
embryogrowth-5.0/embryogrowth/man/embryogrowth_MHmcmc.Rd |only
embryogrowth-5.1/embryogrowth/DESCRIPTION | 14
embryogrowth-5.1/embryogrowth/MD5 | 149 ++---
embryogrowth-5.1/embryogrowth/NAMESPACE | 12
embryogrowth-5.1/embryogrowth/NEWS | 15
embryogrowth-5.1/embryogrowth/R/MHalgoGen.R | 32 -
embryogrowth-5.1/embryogrowth/R/STSRE_TSD.R | 48 +
embryogrowth-5.1/embryogrowth/R/embryogrowth-package.R | 16
embryogrowth-5.1/embryogrowth/R/fonctiontsdMCMC.R |only
embryogrowth-5.1/embryogrowth/R/gradientRichardson.R | 2
embryogrowth-5.1/embryogrowth/R/hessianRichardson.R | 2
embryogrowth-5.1/embryogrowth/R/likelihoodR.R | 13
embryogrowth-5.1/embryogrowth/R/merge.mcmcComposite.R | 13
embryogrowth-5.1/embryogrowth/R/minmax.periodic.R |only
embryogrowth-5.1/embryogrowth/R/plot.NestsResult.R | 9
embryogrowth-5.1/embryogrowth/R/plot.tsd.R |only
embryogrowth-5.1/embryogrowth/R/predict.tsd.R | 127 +++-
embryogrowth-5.1/embryogrowth/R/resultNest_4p.R | 6
embryogrowth-5.1/embryogrowth/R/resultNest_4p_transition.R | 6
embryogrowth-5.1/embryogrowth/R/resultNest_4p_weight.R | 6
embryogrowth-5.1/embryogrowth/R/resultNest_6p.R | 6
embryogrowth-5.1/embryogrowth/R/resultNest_newp.R | 6
embryogrowth-5.1/embryogrowth/R/result_mcmc_4p.R | 6
embryogrowth-5.1/embryogrowth/R/result_mcmc_6p.R | 6
embryogrowth-5.1/embryogrowth/R/result_mcmc_newp.R | 6
embryogrowth-5.1/embryogrowth/R/searchR.R | 48 -
embryogrowth-5.1/embryogrowth/R/temperature.periodic.R |only
embryogrowth-5.1/embryogrowth/R/tsd.R | 294 ++++++++--
embryogrowth-5.1/embryogrowth/R/tsd_MHmcmc.R |only
embryogrowth-5.1/embryogrowth/R/tsd_MHmcmc_p.R |only
embryogrowth-5.1/embryogrowth/R/tsd_fit.R | 23
embryogrowth-5.1/embryogrowth/R/web.embryogrowth.R |only
embryogrowth-5.1/embryogrowth/R/weightmaxentropy.R | 18
embryogrowth-5.1/embryogrowth/data/STSRE_TSD.rda |binary
embryogrowth-5.1/embryogrowth/man/ChangeSSM.Rd | 2
embryogrowth-5.1/embryogrowth/man/FormatNests.Rd | 2
embryogrowth-5.1/embryogrowth/man/GenerateAnchor.Rd | 2
embryogrowth-5.1/embryogrowth/man/GenerateConstInc.Rd | 2
embryogrowth-5.1/embryogrowth/man/GenerateTest.Rd | 2
embryogrowth-5.1/embryogrowth/man/MovingIncubation.Rd | 14
embryogrowth-5.1/embryogrowth/man/STSRE_NestingArea.Rd | 2
embryogrowth-5.1/embryogrowth/man/STSRE_TSD.Rd | 63 +-
embryogrowth-5.1/embryogrowth/man/TestParallel.Rd | 2
embryogrowth-5.1/embryogrowth/man/dydt.Gompertz.Rd | 2
embryogrowth-5.1/embryogrowth/man/dydt.exponential.Rd | 2
embryogrowth-5.1/embryogrowth/man/dydt.linear.Rd | 2
embryogrowth-5.1/embryogrowth/man/embryogrowth-package.Rd | 18
embryogrowth-5.1/embryogrowth/man/embryogrowth_MHmcmc_p.Rd | 2
embryogrowth-5.1/embryogrowth/man/hist.Nests.Rd | 2
embryogrowth-5.1/embryogrowth/man/hist.NestsResult.Rd | 2
embryogrowth-5.1/embryogrowth/man/info.nests.Rd | 8
embryogrowth-5.1/embryogrowth/man/likelihoodR.Rd | 6
embryogrowth-5.1/embryogrowth/man/logLik.NestsResult.Rd | 2
embryogrowth-5.1/embryogrowth/man/logLik.tsd.Rd | 2
embryogrowth-5.1/embryogrowth/man/merge.mcmcComposite.Rd | 6
embryogrowth-5.1/embryogrowth/man/minmax.periodic.Rd |only
embryogrowth-5.1/embryogrowth/man/nest.Rd | 2
embryogrowth-5.1/embryogrowth/man/plot.NestsResult.Rd | 50 -
embryogrowth-5.1/embryogrowth/man/plot.tsd.Rd |only
embryogrowth-5.1/embryogrowth/man/plotR.Rd | 18
embryogrowth-5.1/embryogrowth/man/plotR_hist.Rd | 2
embryogrowth-5.1/embryogrowth/man/plot_transition.Rd | 2
embryogrowth-5.1/embryogrowth/man/predict.tsd.Rd | 7
embryogrowth-5.1/embryogrowth/man/resultNest_4p.Rd | 8
embryogrowth-5.1/embryogrowth/man/resultNest_4p_transition.Rd | 8
embryogrowth-5.1/embryogrowth/man/resultNest_4p_weight.Rd | 8
embryogrowth-5.1/embryogrowth/man/resultNest_6p.Rd | 8
embryogrowth-5.1/embryogrowth/man/resultNest_newp.Rd | 8
embryogrowth-5.1/embryogrowth/man/result_mcmc_4p.Rd | 8
embryogrowth-5.1/embryogrowth/man/result_mcmc_4p_weight.Rd | 2
embryogrowth-5.1/embryogrowth/man/result_mcmc_6p.Rd | 8
embryogrowth-5.1/embryogrowth/man/result_mcmc_newp.Rd | 8
embryogrowth-5.1/embryogrowth/man/searchR.Rd | 4
embryogrowth-5.1/embryogrowth/man/summary.Nests.Rd | 2
embryogrowth-5.1/embryogrowth/man/switch.transition.Rd | 2
embryogrowth-5.1/embryogrowth/man/tempConst.Rd | 2
embryogrowth-5.1/embryogrowth/man/temperature.periodic.Rd |only
embryogrowth-5.1/embryogrowth/man/tsd.Rd | 88 ++
embryogrowth-5.1/embryogrowth/man/tsd_MHmcmc.Rd |only
embryogrowth-5.1/embryogrowth/man/tsd_MHmcmc_p.Rd |only
embryogrowth-5.1/embryogrowth/man/weightmaxentropy.Rd | 15
83 files changed, 890 insertions(+), 398 deletions(-)
Title: Calculate observed and expected disease incidence counts from a
case file and population data.
Diff between diseasemapping versions 1.0.1 dated 2014-09-24 and 1.1.0 dated 2014-10-06
More information about diseasemapping at CRAN
Description: Tools for calculating rates and Standardized Incidence Ratios from case and population data. The BYM model is fit using INLA, obtainable from http://www.r-inla.org.
Author: Patrick Brown
Maintainer: Patrick Brown
diseasemapping-1.0.1/diseasemapping/man/computeArea.Rd |only
diseasemapping-1.0.1/diseasemapping/man/expandCensus.Rd |only
diseasemapping-1.1.0/diseasemapping/DESCRIPTION | 18 +++++-----
diseasemapping-1.1.0/diseasemapping/MD5 | 14 +++++--
diseasemapping-1.1.0/diseasemapping/NAMESPACE | 18 ++++++++--
diseasemapping-1.1.0/diseasemapping/R/bym.R |only
diseasemapping-1.1.0/diseasemapping/R/excProb.R |only
diseasemapping-1.1.0/diseasemapping/R/formulaLhs.R |only
diseasemapping-1.1.0/diseasemapping/man/bym.Rd |only
diseasemapping-1.1.0/diseasemapping/man/diseasemapping-package.Rd | 11 ++++++
diseasemapping-1.1.0/diseasemapping/man/excProb.Rd |only
diseasemapping-1.1.0/diseasemapping/tests/bym.R |only
12 files changed, 46 insertions(+), 15 deletions(-)
Permanent link
Title: Forecasting age-sex-country-cause mortality rates
Diff between YourCast versions 1.6.1 dated 2014-01-16 and 1.6.2 dated 2014-10-06
Description: Software accompanying the book by Girosi and King: Demographic Forecasting.
Four different forecast models (i.e, OLS, LC, POISSON, and MAP).
The driver of the simulation is function mortality.driver(),
with your choices of input parameters, such as country, disease, and gender, and
many others; please read the software manual.
Author: Federico Girosi
Maintainer: Konstantin Kashin
DESCRIPTION | 8 ++++----
MD5 | 10 +++++-----
R/array.yourcast.R | 2 +-
inst/doc/YourCast.pdf |binary
man/array.yourcast.Rd | 3 ++-
man/plot.yourcast.Rd | 4 ++--
6 files changed, 14 insertions(+), 13 deletions(-)
Title: Variance estimation for sample surveys by the ultimate cluster
method
Diff between vardpoor versions 0.2.0.12 dated 2014-08-26 and 0.2.0.13 dated 2014-10-06
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow, 1953), variance estimation for longitudinal, crossectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y.G.). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre], Martins Liberts [aut]
Maintainer: Juris Breidaks
DESCRIPTION | 16 +++++-----
MD5 | 30 +++++++++----------
NAMESPACE | 2 -
R/domain.R | 1
R/vardchanges.R | 73 ++++++++++++++++++++++++------------------------
R/vardcros.R | 26 +++++++----------
R/vardom.R | 68 ++++++++++++++++++++++++++++++--------------
R/vardom_othstr.R | 42 +++++++++++++++++++++++----
R/vardomh.R | 47 ++++++++++++++++++++++++------
R/varpoord.R | 54 ++++++++++++++++++++++++++---------
inst/CITATION | 2 -
man/var_srs.Rd | 2 -
man/vardom.Rd | 4 ++
man/vardom_othstr.Rd | 4 ++
man/vardpoor-package.Rd | 12 +++----
man/variance_est.Rd | 6 +--
16 files changed, 252 insertions(+), 137 deletions(-)
Title: The package was developed to fit fit many growth curves obtained
under different conditions.
Description: The package was developed to fit fit many growth curves
obtained under different conditions in order to derive a
conclusive dose-response curve, for instance for a compound
that potentially affects growth. grofit fits data to different
parametric models (function gcFitModel) and in addition
provides a model free spline fit (function gcFitSpline) to
circumvent systematic errors that might occur within
application of parametric methods.
Author: Matthias Kahm, Maik Kschischo
Maintainer: ORPHANED
Diff between grofit versions 1.1.1 dated 2013-08-08 and 1.1.1-1 dated 2014-10-06
DESCRIPTION | 9 ++++----- MD5 | 2 +- 2 files changed, 5 insertions(+), 6 deletions(-)
Title: Automated caret feature selection
Diff between fscaret versions 0.8.6.2 dated 2014-09-29 and 0.8.6.3 dated 2014-10-06
Description: Automated feature selection using variety of models
provided by caret package
Author: Jakub Szlek
Maintainer: Jakub Szlek
DESCRIPTION | 8 +++----
MD5 | 22 ++++++++++----------
R/dataPreprocess.R | 14 ++++++++++++
R/fscaret.R | 10 ++++-----
R/impCalc.R | 46 +++++++++++++++++++++++++++++++++---------
R/regVarImp.R | 53 ++++++++++++++++++++++++++++++++++++-------------
inst/NEWS.Rd | 11 ++++++++++
inst/doc/fscaret.pdf |binary
man/dataPreprocess.Rd | 2 -
man/fscaret-package.Rd | 4 +--
man/fscaret.Rd | 2 -
man/impCalc.Rd | 12 +++++++++--
12 files changed, 133 insertions(+), 51 deletions(-)
Title: Power and Sample size based on two one-sided t-tests (TOST) for
(bio)equivalence studies
Diff between PowerTOST versions 1.2-01 dated 2014-09-30 and 1.2-02 dated 2014-10-06
Description: Contains functions to calculate power and sample size for
various study designs used for bioequivalence studies.
See function known.designs() for study designs covered.
Moreover the package contains functions for power and sample size
based on 'expected' power in case of uncertain (estimated) variability.
-----
Added are functions for the power and sample size for the ratio of
two means with normally distributed data on the original scale
(based on Fieller's confidence ('fiducial') interval).
-----
Contains further functions for power and sample size calculations based on
non-inferiority t-test. This is not a TOST procedure but eventually useful
if the question of 'non-superiority' must be evaluated.
The power and sample size calculations based on non-inferiority test may
also performed via 'expected' power in case of uncertain (estimated)
variability.
-----
Contains functions power.scABEL() and sampleN.scABEL() to calculate power
and sample size for the BE decision via scaled (widened) BE acceptance
limits based on simulations.
Contains further functions power.RSABE() and sampleN.RSABE() to calculate
power and sample size for the BE decision via reference scaled ABE criterion
according to the FDA procedure based on simulations.
Contains further functions power.NTIDFDA() and sampleN.NTIDFDA() to calculate
power and sample size for the BE decision via the FDA procedure for NTID's
based on simulations.
-----
Contains functions for power analysis of a sample size plan for ABE
(pa.ABE()), scaled ABE (pa.scABE()) and scaled ABE for NTID's (pa.NTIDFDA())
analysing power if deviating from assumptions of the plan.
-----
Contains further functions for power calculations / samplesize estimation
for dose proportionality studies using the Power model.
Author: Detlew Labes [aut, cre],
Helmut Schuetz [aut]
Maintainer: Detlew Labes
DESCRIPTION | 8 ++++----
MD5 | 22 +++++++++++-----------
NEWS | 5 +++++
R/SampleSize_noninf.R | 5 +++--
R/pa.ABE.R | 39 +++++++++++++++++++++++++++++++--------
R/pa.NTID.R | 19 ++++++++++++++-----
R/pa.scABE.R | 34 ++++++++++++++++++++++++++--------
R/power_noninf.R | 3 +++
man/pa.ABE.Rd | 6 ++++--
man/pa.NTIDFDA.Rd | 2 +-
man/pa.scABE.Rd | 7 +++++--
man/power.dp.Rd | 13 +++++++------
12 files changed, 114 insertions(+), 49 deletions(-)
Title: Multinomial Processing Tree (MPT) Models
Diff between mpt versions 0.4-1 dated 2013-01-25 and 0.5-0 dated 2014-10-06
Description: Fitting and testing multinomial processing tree models, a class
of statistical models for categorical data. The parameters are the link
probabilities of a tree-like graph and represent the latent cognitive
processing steps executed to arrive at observable response categories
(Batchelder & Riefer, 1999; Erdfelder et al., 2009; Riefer &
Batchelder, 1988).
Author: Florian Wickelmaier [aut, cre],
Achim Zeileis [aut]
Maintainer: Florian Wickelmaier
mpt-0.4-1/mpt/man/mptmodel.Rd |only
mpt-0.4-1/mpt/man/residuals.mpt.Rd |only
mpt-0.5-0/mpt/ChangeLog | 23 +
mpt-0.5-0/mpt/DESCRIPTION | 31 +
mpt-0.5-0/mpt/MD5 | 37 +-
mpt-0.5-0/mpt/NAMESPACE | 16
mpt-0.5-0/mpt/R/mpt.R | 593 ++++++++++++++++++++++---------------
mpt-0.5-0/mpt/R/mptspec.R |only
mpt-0.5-0/mpt/data/proact.rda |binary
mpt-0.5-0/mpt/data/recogROC.rda |binary
mpt-0.5-0/mpt/data/retroact.rda |binary
mpt-0.5-0/mpt/data/valence.rda |only
mpt-0.5-0/mpt/man/logLik.mpt.Rd | 12
mpt-0.5-0/mpt/man/mpt.Rd | 117 ++++---
mpt-0.5-0/mpt/man/mptEM.Rd | 22 +
mpt-0.5-0/mpt/man/mptspec.Rd |only
mpt-0.5-0/mpt/man/plot.mpt.Rd | 47 +-
mpt-0.5-0/mpt/man/proact.Rd | 19 -
mpt-0.5-0/mpt/man/recogROC.Rd | 15
mpt-0.5-0/mpt/man/retroact.Rd | 18 -
mpt-0.5-0/mpt/man/simulate.mpt.Rd | 21 -
mpt-0.5-0/mpt/man/valence.Rd |only
mpt-0.5-0/mpt/man/vcov.mpt.Rd |only
23 files changed, 577 insertions(+), 394 deletions(-)
Title: Connect MonetDB to R
Diff between MonetDB.R versions 0.9.4 dated 2014-07-18 and 0.9.5 dated 2014-10-06
Description: Allows to pull data from MonetDB into R. Includes a DBI implementation and a dplyr backend.
Author: Hannes Muehleisen [aut, cre], Thomas Lumley [ctb], Anthony Damico [ctb]
Maintainer: Hannes Muehleisen
MonetDB.R-0.9.4/MonetDB.R/R/monetdb.R |only
MonetDB.R-0.9.4/MonetDB.R/man/monetdbGetTransferredBytes.Rd |only
MonetDB.R-0.9.5/MonetDB.R/DESCRIPTION | 21 ++++------
MonetDB.R-0.9.5/MonetDB.R/MD5 | 12 +++--
MonetDB.R-0.9.5/MonetDB.R/NAMESPACE | 25 +++++++-----
MonetDB.R-0.9.5/MonetDB.R/NEWS | 10 ++++
MonetDB.R-0.9.5/MonetDB.R/R/dbi.R |only
MonetDB.R-0.9.5/MonetDB.R/R/dplyr.R |only
MonetDB.R-0.9.5/MonetDB.R/R/mapi.R |only
MonetDB.R-0.9.5/MonetDB.R/man/src_monetdb.Rd |only
10 files changed, 42 insertions(+), 26 deletions(-)
Title: VLMC -- Variable Length Markov Chains
Diff between VLMC versions 1.3-14 dated 2014-06-03 and 1.4-0 dated 2014-10-06
Description: Functions, Classes & Methods for estimation, prediction, and
simulation (bootstrap) of VLMC -- Variable Length Markov Chain -- Models
Author: Martin Maechler
Maintainer: Martin Maechler
ChangeLog | 7
DESCRIPTION | 11
MD5 | 38 -
NAMESPACE | 9
R/draw.R | 9
R/entropy.R | 32 -
R/predict.R | 10
R/sim.R | 53 -
R/vlmc.R | 40 -
R/zzz.R | 7
man/OZrain.Rd | 9
man/logLik.Rd | 4
man/simulate.vlmc.Rd | 31 -
src/entropy.c | 56 +
src/sim.c | 38 -
tests/AIC-etc.R | 7
tests/AIC-etc.Rout.save | 19
tests/iid-cutoff.R | 28
tests/iid-cutoff.Rout.save | 1325 ---------------------------------------------
tests/pred-vlmc.Rout.save | 17
20 files changed, 271 insertions(+), 1479 deletions(-)
Title: Zero-Inflated Models for Count Time Series with Excess Zeros
Diff between ZIM versions 1.0.1 dated 2014-05-08 and 1.0.2 dated 2014-10-06
Description: Fits observation-driven and parameter-driven models for zero-inflated time series
Author: Ming Yang, Gideon K. D. Zamba, and Joseph E. Cavanaugh
Maintainer: Ming Yang
DESCRIPTION | 8 ++++----
MD5 | 52 +++++++++++++++++++++++++++++-----------------------
NAMESPACE | 2 ++
R/ZIM-package.R | 6 +++---
R/dzim.R | 2 +-
R/misc.R | 1 -
R/zim.R | 2 +-
README.md |only
build |only
inst |only
man/ZIM-package.Rd | 42 ++++++++++++++++--------------------------
man/bshift.Rd | 11 ++++-------
man/dpqr-zinb.Rd | 36 +++++++++++++++---------------------
man/dpqr-zip.Rd | 34 ++++++++++++++--------------------
man/dzim.Rd | 34 +++++++++++++++-------------------
man/dzim.control.Rd | 43 +++++++++++++++++++++----------------------
man/dzim.filter.Rd | 29 +++++++++++++++--------------
man/dzim.fit.Rd | 26 ++++++++++++++------------
man/dzim.plot.Rd | 16 ++++++----------
man/dzim.sim.Rd | 29 ++++++++++++++++-------------
man/dzim.smooth.Rd | 29 +++++++++++++++--------------
man/injury.Rd | 10 ++++------
man/pvalue.Rd | 7 ++++---
man/syph.Rd | 9 ++++-----
man/zim.Rd | 30 +++++++++++-------------------
man/zim.control.Rd | 26 ++++++++++++--------------
man/zim.fit.Rd | 23 ++++++++++-------------
vignettes |only
28 files changed, 236 insertions(+), 271 deletions(-)
Title: Pathwise Calibrated Sparse Shooting Algorithm
Diff between picasso versions 0.1.0 dated 2014-08-13 and 0.2.0 dated 2014-10-06
Description: Implement a new family of efficient algorithms, called PathwIse CalibrAted Sparse Shooting AlgOrithm, for a variety of sparse learning problems, including Sparse Linear Regression, Sparse Logistic Regression, Sparse Column Inverse Operator and Sparse Multivariate Regression. Different types of active set identification schemes are implemented, such as cyclic search, greedy search, stochastic search and proximal gradient search. Besides, the package provides the choices between convex (L1 norm) and non-convex (MCP and SCAD) regularizations. Moreover, group regularization, such as group Lasso, group MCP and group SCAD, are also implemented for Sparse Linear Regression, Sparse Logistic Regression and Sparse Multivariate Regression.
Author: Xingguo Li, Tuo Zhao and Han Liu
Maintainer: Xingguo Li
picasso-0.1.0/picasso/R/glasso.cyclic.R |only
picasso-0.1.0/picasso/R/glasso.greedy.R |only
picasso-0.1.0/picasso/R/glasso.prox.R |only
picasso-0.1.0/picasso/R/glasso.stoc.R |only
picasso-0.1.0/picasso/R/lasso.l1.cyclic.R |only
picasso-0.1.0/picasso/R/lasso.l1.greedy.R |only
picasso-0.1.0/picasso/R/lasso.l1.prox.R |only
picasso-0.1.0/picasso/R/lasso.l1.stoc.R |only
picasso-0.1.0/picasso/R/lasso.mcp.cyclic.R |only
picasso-0.1.0/picasso/R/lasso.mcp.greedy.R |only
picasso-0.1.0/picasso/R/lasso.mcp.prox.R |only
picasso-0.1.0/picasso/R/lasso.mcp.stoc.R |only
picasso-0.1.0/picasso/R/lasso.scad.cyclic.R |only
picasso-0.1.0/picasso/R/lasso.scad.greedy.R |only
picasso-0.1.0/picasso/R/lasso.scad.prox.R |only
picasso-0.1.0/picasso/R/lasso.scad.stoc.R |only
picasso-0.1.0/picasso/R/logit.gr.cyclic.R |only
picasso-0.1.0/picasso/R/logit.gr.greedy.R |only
picasso-0.1.0/picasso/R/logit.gr.prox.R |only
picasso-0.1.0/picasso/R/logit.gr.stoc.R |only
picasso-0.1.0/picasso/R/logit.l1.cyclic.R |only
picasso-0.1.0/picasso/R/logit.l1.greedy.R |only
picasso-0.1.0/picasso/R/logit.l1.prox.R |only
picasso-0.1.0/picasso/R/logit.l1.stoc.R |only
picasso-0.1.0/picasso/R/logit.mcp.cyclic.R |only
picasso-0.1.0/picasso/R/logit.mcp.greedy.R |only
picasso-0.1.0/picasso/R/logit.mcp.prox.R |only
picasso-0.1.0/picasso/R/logit.mcp.stoc.R |only
picasso-0.1.0/picasso/R/logit.prox.linR.R |only
picasso-0.1.0/picasso/R/logit.scad.cyclic.R |only
picasso-0.1.0/picasso/R/logit.scad.greedy.R |only
picasso-0.1.0/picasso/R/logit.scad.prox.R |only
picasso-0.1.0/picasso/R/logit.scad.stoc.R |only
picasso-0.1.0/picasso/R/mvr.cyclic.R |only
picasso-0.1.0/picasso/R/mvr.greedy.R |only
picasso-0.1.0/picasso/R/mvr.prox.R |only
picasso-0.1.0/picasso/R/mvr.stoc.R |only
picasso-0.1.0/picasso/R/scio.l1.cyclic.R |only
picasso-0.1.0/picasso/R/scio.l1.greedy.R |only
picasso-0.1.0/picasso/R/scio.l1.prox.R |only
picasso-0.1.0/picasso/R/scio.l1.stoc.R |only
picasso-0.1.0/picasso/R/scio.mcp.cyclic.R |only
picasso-0.1.0/picasso/R/scio.mcp.greedy.R |only
picasso-0.1.0/picasso/R/scio.mcp.prox.R |only
picasso-0.1.0/picasso/R/scio.mcp.stoc.R |only
picasso-0.1.0/picasso/R/scio.scad.cyclic.R |only
picasso-0.1.0/picasso/R/scio.scad.greedy.R |only
picasso-0.1.0/picasso/R/scio.scad.prox.R |only
picasso-0.1.0/picasso/R/scio.scad.stoc.R |only
picasso-0.1.0/picasso/man/picasso.lasso.Rd |only
picasso-0.1.0/picasso/man/picasso.logit.Rd |only
picasso-0.1.0/picasso/man/picasso.mvr.Rd |only
picasso-0.1.0/picasso/man/picasso.scio.Rd |only
picasso-0.1.0/picasso/src/picasso_glasso_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_glasso_greedy.c |only
picasso-0.1.0/picasso/src/picasso_glasso_prox.c |only
picasso-0.1.0/picasso/src/picasso_glasso_stoc.c |only
picasso-0.1.0/picasso/src/picasso_lasso_l1_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_lasso_l1_greedy.c |only
picasso-0.1.0/picasso/src/picasso_lasso_l1_prox.c |only
picasso-0.1.0/picasso/src/picasso_lasso_l1_stoc.c |only
picasso-0.1.0/picasso/src/picasso_lasso_mcp_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_lasso_mcp_greedy.c |only
picasso-0.1.0/picasso/src/picasso_lasso_mcp_prox.c |only
picasso-0.1.0/picasso/src/picasso_lasso_mcp_stoc.c |only
picasso-0.1.0/picasso/src/picasso_lasso_scad_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_lasso_scad_greedy.c |only
picasso-0.1.0/picasso/src/picasso_lasso_scad_prox.c |only
picasso-0.1.0/picasso/src/picasso_lasso_scad_stoc.c |only
picasso-0.1.0/picasso/src/picasso_logit_gr_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_logit_gr_greedy.c |only
picasso-0.1.0/picasso/src/picasso_logit_gr_prox.c |only
picasso-0.1.0/picasso/src/picasso_logit_gr_stoc.c |only
picasso-0.1.0/picasso/src/picasso_logit_l1_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_logit_l1_greedy.c |only
picasso-0.1.0/picasso/src/picasso_logit_l1_prox.c |only
picasso-0.1.0/picasso/src/picasso_logit_l1_stoc.c |only
picasso-0.1.0/picasso/src/picasso_logit_mcp_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_logit_mcp_greedy.c |only
picasso-0.1.0/picasso/src/picasso_logit_mcp_prox.c |only
picasso-0.1.0/picasso/src/picasso_logit_mcp_stoc.c |only
picasso-0.1.0/picasso/src/picasso_logit_scad_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_logit_scad_greedy.c |only
picasso-0.1.0/picasso/src/picasso_logit_scad_prox.c |only
picasso-0.1.0/picasso/src/picasso_logit_scad_stoc.c |only
picasso-0.1.0/picasso/src/picasso_mvr_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_mvr_greedy.c |only
picasso-0.1.0/picasso/src/picasso_mvr_prox.c |only
picasso-0.1.0/picasso/src/picasso_mvr_stoc.c |only
picasso-0.1.0/picasso/src/picasso_scio_ama_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_scio_l1_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_scio_l1_greedy.c |only
picasso-0.1.0/picasso/src/picasso_scio_l1_prox.c |only
picasso-0.1.0/picasso/src/picasso_scio_l1_stoc.c |only
picasso-0.1.0/picasso/src/picasso_scio_mcp_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_scio_mcp_cyclic1.c |only
picasso-0.1.0/picasso/src/picasso_scio_mcp_greedy.c |only
picasso-0.1.0/picasso/src/picasso_scio_mcp_greedy1.c |only
picasso-0.1.0/picasso/src/picasso_scio_mcp_prox.c |only
picasso-0.1.0/picasso/src/picasso_scio_mcp_prox1.c |only
picasso-0.1.0/picasso/src/picasso_scio_mcp_stoc.c |only
picasso-0.1.0/picasso/src/picasso_scio_scad_cyclic.c |only
picasso-0.1.0/picasso/src/picasso_scio_scad_cyclic1.c |only
picasso-0.1.0/picasso/src/picasso_scio_scad_greedy.c |only
picasso-0.1.0/picasso/src/picasso_scio_scad_greedy1.c |only
picasso-0.1.0/picasso/src/picasso_scio_scad_prox.c |only
picasso-0.1.0/picasso/src/picasso_scio_scad_prox1.c |only
picasso-0.1.0/picasso/src/picasso_scio_scad_stoc.c |only
picasso-0.2.0/picasso/DESCRIPTION | 10
picasso-0.2.0/picasso/MD5 | 192 +---
picasso-0.2.0/picasso/NAMESPACE | 5
picasso-0.2.0/picasso/R/glasso.R |only
picasso-0.2.0/picasso/R/lasso.R |only
picasso-0.2.0/picasso/R/logit.R |only
picasso-0.2.0/picasso/R/logit.gr.orth.R |only
picasso-0.2.0/picasso/R/mvr.orth.R |only
picasso-0.2.0/picasso/R/picasso.R |only
picasso-0.2.0/picasso/R/picasso.lasso.R | 201 +++--
picasso-0.2.0/picasso/R/picasso.logit.R | 150 ++-
picasso-0.2.0/picasso/R/picasso.mvr.R | 87 +-
picasso-0.2.0/picasso/R/picasso.scio.R | 70 +
picasso-0.2.0/picasso/R/scio.R |only
picasso-0.2.0/picasso/man/coef.lasso.Rd | 2
picasso-0.2.0/picasso/man/coef.logit.Rd | 2
picasso-0.2.0/picasso/man/picasso-package.Rd | 9
picasso-0.2.0/picasso/man/picasso.Rd |only
picasso-0.2.0/picasso/man/plot.lasso.Rd | 2
picasso-0.2.0/picasso/man/plot.logit.Rd | 2
picasso-0.2.0/picasso/man/plot.scio.Rd | 2
picasso-0.2.0/picasso/man/plot.sim.Rd | 2
picasso-0.2.0/picasso/man/predict.lasso.Rd | 4
picasso-0.2.0/picasso/man/predict.logit.Rd | 4
picasso-0.2.0/picasso/man/print.lasso.Rd | 2
picasso-0.2.0/picasso/man/print.logit.Rd | 2
picasso-0.2.0/picasso/man/print.mvr.Rd | 2
picasso-0.2.0/picasso/man/print.scio.Rd | 2
picasso-0.2.0/picasso/man/print.sim.Rd | 2
picasso-0.2.0/picasso/man/scio.generator.Rd | 2
picasso-0.2.0/picasso/man/scio.plot.Rd | 2
picasso-0.2.0/picasso/src/SFGen.c | 11
picasso-0.2.0/picasso/src/mathlib.h |only
picasso-0.2.0/picasso/src/mymath.c | 578 +++++++++++++--
picasso-0.2.0/picasso/src/mymath.h | 90 ++
picasso-0.2.0/picasso/src/picasso_group_cyclic_orth.c |only
picasso-0.2.0/picasso/src/picasso_group_greedy_orth.c |only
picasso-0.2.0/picasso/src/picasso_group_prox_orth.c |only
picasso-0.2.0/picasso/src/picasso_group_stoc_orth.c |only
picasso-0.2.0/picasso/src/picasso_lasso_cyclic.c |only
picasso-0.2.0/picasso/src/picasso_lasso_cyclic0.c |only
picasso-0.2.0/picasso/src/picasso_lasso_greedy.c |only
picasso-0.2.0/picasso/src/picasso_lasso_prox.c |only
picasso-0.2.0/picasso/src/picasso_lasso_stoc.c |only
picasso-0.2.0/picasso/src/picasso_logit_cyclic.c |only
picasso-0.2.0/picasso/src/picasso_logit_gr_cyclic_orth.c |only
picasso-0.2.0/picasso/src/picasso_logit_gr_greedy_orth.c |only
picasso-0.2.0/picasso/src/picasso_logit_gr_prox_orth.c |only
picasso-0.2.0/picasso/src/picasso_logit_gr_stoc_orth.c |only
picasso-0.2.0/picasso/src/picasso_logit_greedy.c |only
picasso-0.2.0/picasso/src/picasso_logit_prox.c |only
picasso-0.2.0/picasso/src/picasso_logit_stoc.c |only
picasso-0.2.0/picasso/src/picasso_mvr_cyclic_orth.c |only
picasso-0.2.0/picasso/src/picasso_mvr_greedy_orth.c |only
picasso-0.2.0/picasso/src/picasso_mvr_prox_orth.c |only
picasso-0.2.0/picasso/src/picasso_mvr_stoc_orth.c |only
picasso-0.2.0/picasso/src/picasso_scio_cyclic.c |only
picasso-0.2.0/picasso/src/picasso_scio_greedy.c |only
picasso-0.2.0/picasso/src/picasso_scio_prox.c |only
picasso-0.2.0/picasso/src/picasso_scio_stoc.c |only
168 files changed, 1018 insertions(+), 419 deletions(-)
Title: Check If a Remote Computer is Up
Diff between pingr versions 1.0.0 dated 2014-09-22 and 1.1.0 dated 2014-10-06
Description: Check if a remote computer is up. It can either
just call the system ping command, or check a specified
TCP port.
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
DESCRIPTION | 6 +++---
MD5 | 17 +++++++++--------
NAMESPACE | 3 ++-
R/ping-package.r | 32 ++++++++++++++++++++++++++++++++
man/is_online.Rd |only
man/ping.Rd | 2 +-
man/ping_port.Rd | 2 +-
man/pingr-package.Rd | 2 +-
src/rping.c | 30 ++++++++++++++++++++++++------
tests/testthat/test-tcp.r | 2 +-
10 files changed, 74 insertions(+), 22 deletions(-)