Title: rcdk - Interface to the CDK Libraries
Diff between rcdk versions 3.3.0 dated 2014-08-31 and 3.3.1 dated 2014-10-07
Description: This package allows the user to access functionality in the
CDK, a Java framework for cheminformatics. This allows the user to load
molecules, evaluate fingerprints, calculate molecular descriptors and so on.
In addition the CDK API allows the user to view structures in 2D.
Author: Rajarshi Guha [aut, cre, cph]
Maintainer: Rajarshi Guha
DESCRIPTION | 8 ++++----
MD5 | 8 ++++----
R/fingerprint.R | 3 ++-
inst/doc/rcdk.pdf |binary
man/getfp.Rd | 3 ++-
5 files changed, 12 insertions(+), 10 deletions(-)
Title: Generate functions to get or set global options
Diff between GlobalOptions versions 0.0.1 dated 2014-09-15 and 0.0.2 dated 2014-10-07
Description: Generate functions to get or set global options
Author: Zuguang Gu
Maintainer: Zuguang Gu
DESCRIPTION | 11 -
MD5 | 22 +-
NAMESPACE | 2
NEWS | 9 +
R/setGlobalOptions.R | 376 +++++++++++++++++++++++++++++++++-----------
inst/doc/GlobalOptions.R | 72 ++------
inst/doc/GlobalOptions.Rnw | 186 ++++++++++++---------
inst/doc/GlobalOptions.pdf |binary
inst/tests/package1 |only
inst/tests/package2 |only
inst/tests/test.R | 52 +++++-
man/setGlobalOptions.rd | 16 +
vignettes/GlobalOptions.Rnw | 186 ++++++++++++---------
13 files changed, 605 insertions(+), 327 deletions(-)
Title: Tools to make developing R code easier
Diff between devtools versions 1.6 dated 2014-09-23 and 1.6.1 dated 2014-10-07
Description: Collection of package development tools.
Author: Hadley Wickham [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Hadley Wickham
DESCRIPTION | 6 +++---
MD5 | 13 +++++++------
R/check.r | 2 +-
R/infrastructure.R | 3 ++-
R/with-debug.r | 7 ++++++-
README.md | 2 +-
inst/templates/template.Rproj |only
man/check.Rd | 3 ++-
8 files changed, 22 insertions(+), 14 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Diff between nlme versions 3.1-117 dated 2014-03-31 and 3.1-118 dated 2014-10-07
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
R-core [aut, cre]
Maintainer: R-core
ChangeLog | 13 ++++++++
DESCRIPTION | 8 ++---
MD5 | 76 +++++++++++++++++++++++++--------------------------
R/VarCorr.R | 1
R/VarCov.R | 2 +
R/corStruct.R | 2 +
R/gls.R | 1
R/gnls.R | 1
R/groupedData.R | 1
R/lmList.R | 1
R/lme.R | 1
R/modelStruct.R | 1
R/newFunc.R | 1
R/newGenerics.R | 1
R/newMethods.R | 1
R/nlme.R | 7 ++--
R/nlsList.R | 1
R/pdMat.R | 1
R/reStruct.R | 1
R/simulate.R | 1
R/varFunc.R | 1
R/zzMethods.R | 1
README | 1
src/base.h | 1
src/corStruct.c | 1
src/gnls.c | 1
src/init.c | 1
src/matrix.c | 1
src/matrix.h | 1
src/nlOptimizer.c | 1
src/nlOptimizer.h | 1
src/nlme.c | 1
src/nlmefit.c | 1
src/nlmefit.h | 1
src/nls.c | 1
src/pdMat.c | 1
src/pdMat.h | 1
tests/nlme.R | 1
tests/nlme.Rout.save | 1
39 files changed, 94 insertions(+), 47 deletions(-)
Title: Multivariate Normal Distributions with Power Integrand
Diff between mnormpow versions 0.1 dated 2014-10-05 and 0.1.1 dated 2014-10-07
Description: Computes integral of f(x)*x_i^k on a product of intervals,
where f is the density of a gaussian law.
This a is small alteration of the mnormt code from A. Genz and A. Azzalini.
Author: Alan Genz [ctb],
Adelchi Azzalini [ctb],
Alexis Bienvenüe [aut, cre],
Christian Robert [aut]
Maintainer: Alexis Bienvenüe
DESCRIPTION | 15 ++++++++-------
MD5 | 8 ++++----
R/mnormpow.R | 16 +++++++++-------
man/mnormpow.Rd | 5 ++---
src/sadmvntg.f | 3 ++-
5 files changed, 25 insertions(+), 22 deletions(-)
Title: Fitting Semi-parametric Symmetric Regression Models
Diff between ssym versions 1.5 dated 2014-08-21 and 1.5.1 dated 2014-10-07
Description: This package allows to fit a regression model suitable for data analysis in which the conditional distribution of the response is symmetric continuous and where its location and dispersion parameters are explicitly modelled through semi-parametric functions, whose non-parametric components are approximated by natural cubic splines or P-splines. Supported distributions for the model error include normal, Student-t, power exponential, symmetric hyperbolic, contaminated normal, slash, sinh-normal and sinh-t distributions.
Author: Luis Hernando Vanegas
Maintainer: Luis Hernando Vanegas
ssym-1.5.1/ssym/DESCRIPTION | 16 -
ssym-1.5.1/ssym/MD5 | 74 +++--
ssym-1.5.1/ssym/NAMESPACE | 4
ssym-1.5.1/ssym/R/coef.ssym.R |only
ssym-1.5.1/ssym/R/estfun.ssym.R |only
ssym-1.5.1/ssym/R/fitted.ssym.R |only
ssym-1.5.1/ssym/R/influence.ssym.R |only
ssym-1.5.1/ssym/R/itpM.R | 3
ssym-1.5.1/ssym/R/itpM2.R | 24 -
ssym-1.5.1/ssym/R/lambda.hat.R | 10
ssym-1.5.1/ssym/R/logLik.ssym.R |only
ssym-1.5.1/ssym/R/ncs.R |only
ssym-1.5.1/ssym/R/np.graph.R |only
ssym-1.5.1/ssym/R/plot.ssym.R |only
ssym-1.5.1/ssym/R/print.ssym.R |only
ssym-1.5.1/ssym/R/psp.R |only
ssym-1.5.1/ssym/R/residuals.ssym.R |only
ssym-1.5.1/ssym/R/rvgs.R | 4
ssym-1.5.1/ssym/R/ssym.l.R | 443 +++++++++++++++++++---------------
ssym-1.5.1/ssym/R/ssym.nl.R | 221 ++++++++++------
ssym-1.5.1/ssym/R/summary.ssym.R | 62 ++--
ssym-1.5.1/ssym/R/vcov.ssym.R |only
ssym-1.5.1/ssym/data/Biaxial.rda |binary
ssym-1.5.1/ssym/data/Erabbits.rda |binary
ssym-1.5.1/ssym/man/Biaxial.Rd | 9
ssym-1.5.1/ssym/man/Claims.Rd | 8
ssym-1.5.1/ssym/man/Erabbits.Rd | 9
ssym-1.5.1/ssym/man/Ovocytes.Rd | 18 -
ssym-1.5.1/ssym/man/Snacks.Rd | 5
ssym-1.5.1/ssym/man/coef.ssym.Rd |only
ssym-1.5.1/ssym/man/estfun.ssym.Rd |only
ssym-1.5.1/ssym/man/fitted.ssym.Rd |only
ssym-1.5.1/ssym/man/gdp.Rd | 13
ssym-1.5.1/ssym/man/influence.ssym.Rd |only
ssym-1.5.1/ssym/man/lambda.hat.Rd | 38 +-
ssym-1.5.1/ssym/man/logLik.ssym.Rd |only
ssym-1.5.1/ssym/man/ncs.Rd |only
ssym-1.5.1/ssym/man/np.graph.Rd |only
ssym-1.5.1/ssym/man/plot.ssym.Rd |only
ssym-1.5.1/ssym/man/print.ssym.Rd |only
ssym-1.5.1/ssym/man/psp.Rd |only
ssym-1.5.1/ssym/man/residuals.ssym.Rd |only
ssym-1.5.1/ssym/man/rvgs.Rd | 10
ssym-1.5.1/ssym/man/ssym-package.Rd | 10
ssym-1.5.1/ssym/man/ssym.l.Rd | 179 ++++---------
ssym-1.5.1/ssym/man/ssym.nl.Rd | 225 +++++++----------
ssym-1.5.1/ssym/man/summary.ssym.Rd | 3
ssym-1.5.1/ssym/man/vcov.ssym.Rd |only
ssym-1.5/ssym/R/ncs.graph.R |only
ssym-1.5/ssym/R/splinek.R |only
ssym-1.5/ssym/man/ncs.graph.Rd |only
ssym-1.5/ssym/man/splinek.Rd |only
52 files changed, 718 insertions(+), 670 deletions(-)
Title: Turtle graphics in R
Diff between TurtleGraphics versions 1.0-4 dated 2014-08-05 and 1.0-5 dated 2014-10-07
More information about TurtleGraphics at CRAN
Description: An implementation of turtle graphics
(http://en.wikipedia.org/wiki/Turtle_graphics) in R.
Turtle graphics comes from Papert's language Logo and has
been used to teach concepts of computer programming.
Author: Anna Cena [aut],
Marek Gagolewski [aut],
Marcin Kosinski [aut],
Natalia Potocka [aut],
Barbara Zogala-Siudem [aut, cre]
Maintainer: Barbara Zogala-Siudem
DESCRIPTION | 12
MD5 | 41 -
NAMESPACE | 3
NEWS |only
R/TurtleGraphics-package.R | 1
build/vignette.rds |binary
inst/doc/TurtleGraphics.R | 944 ++++++-----------------------------
inst/doc/TurtleGraphics.Rnw | 1113 ++++++++++++++----------------------------
inst/doc/TurtleGraphics.pdf |binary
man/TurtleGraphics-package.Rd | 2
man/turtle_do.Rd | 2
man/turtle_getpos.Rd | 2
man/turtle_goto.Rd | 2
man/turtle_init.Rd | 2
man/turtle_move.Rd | 2
man/turtle_param.Rd | 6
man/turtle_reset.Rd | 2
man/turtle_show.Rd | 2
man/turtle_status.Rd | 2
man/turtle_turn.Rd | 2
man/turtle_up.Rd | 2
vignettes/TurtleGraphics.Rnw | 1112 ++++++++++++++---------------------------
22 files changed, 1000 insertions(+), 2254 deletions(-)
Permanent link
Title: Approximate string matching and string distance functions.
Diff between stringdist versions 0.8.0 dated 2014-08-08 and 0.8.1 dated 2014-10-07
Description: Implements an approximate string matching version of R's native
'match' function. Can calculate various string distances based on edits
(damerau-levenshtein, hamming, levenshtein, optimal sting alignment),
qgrams (q-gram, cosine, jaccard distance) or heuristic metrics (jaro,
jaro-winkler). An implementation of soundex is provided as well.
Author: Mark van der Loo [aut, cre],
Jan van der Laan [ctb]
Maintainer: Mark van der Loo
DESCRIPTION | 9 +-
MD5 | 20 ++---
NAMESPACE | 1
NEWS | 6 +
R/stringdist.R | 167 +++++++++++++++++++++++---------------------
R/utils.R | 4 -
inst/tests/testStringdist.R | 2
man/printable_ascii.Rd | 4 -
man/stringdist-package.Rd | 103 +++++++++++++++++++++++++++
man/stringdist.Rd | 147 +++++++-------------------------------
src/osa.c | 2
11 files changed, 248 insertions(+), 217 deletions(-)
Title: Quality Control Charts
Diff between qcc versions 2.5 dated 2014-07-01 and 2.6 dated 2014-10-07
Description: Shewhart quality control charts for continuous, attribute and count data. Cusum and EWMA charts. Operating characteristic curves. Process capability analysis. Pareto chart and cause-and-effect chart. Multivariate control charts.
Author: Luca Scrucca
Maintainer: Luca Scrucca
DESCRIPTION | 8 +-
MD5 | 10 +-
R/capability.R | 170 +++++++++++++++++++++++++---------------------
inst/NEWS | 4 +
man/process.capability.Rd | 6 +
man/qcc.Rd | 8 +-
6 files changed, 118 insertions(+), 88 deletions(-)
Title: R Client for the MTurk Requester API
Diff between MTurkR versions 0.5.1 dated 2014-09-08 and 0.5.51 dated 2014-10-07
Description: Provides R access to the Amazon Mechanical Turk (MTurk) Requester API.
Author: Thomas J. Leeper [aut, cre],
Solomon Messing [ctb],
Sean Murphy [ctb]
Maintainer: Thomas J. Leeper
DESCRIPTION | 8 -
MD5 | 216 ++++++++++++++++----------------
NAMESPACE | 6
NEWS | 19 ++
R/AccountBalance.R | 2
R/ApproveAllAssignments.R | 28 ++--
R/ApproveAssignment.R | 2
R/AssignQualification.R | 19 +-
R/BlockWorker.R | 2
R/ChangeHITType.R | 23 ++-
R/ContactWorker.R | 2
R/CreateHIT.R | 8 -
R/CreateQualificationType.R | 5
R/DisableHIT.R | 31 ++--
R/DisposeHIT.R | 31 ++--
R/DisposeQualificationType.R | 2
R/ExpireHIT.R | 29 ++--
R/ExtendHIT.R | 33 +++-
R/GenerateHITsFromTemplate.R | 23 ---
R/GenerateQualificationRequirement.R | 2
R/GenerateReviewPolicy.R | 197 ++++++++++++++++-------------
R/GetAssignment.R | 33 +++-
R/GetBlockedWorkers.R | 2
R/GetBonuses.R | 34 +++--
R/GetFileUpload.R | 28 ++--
R/GetHIT.R | 2
R/GetHITsForQualificationType.R | 2
R/GetQualificationRequests.R | 2
R/GetQualificationScore.R | 12 +
R/GetQualificationType.R | 5
R/GetQualifications.R | 2
R/GetReviewResultsForHIT.R | 47 +++---
R/GetReviewableHITs.R | 4
R/GetStatistic.R | 2
R/GetWorkerStatistic.R | 2
R/GrantBonus.R | 2
R/GrantQualification.R | 2
R/HITStatus.R | 14 +-
R/RegisterHITType.R | 2
R/RejectAssignment.R | 2
R/RejectQualification.R | 2
R/RequesterReport.R | 2
R/RevokeQualification.R | 22 +--
R/SearchHITs.R | 6
R/SearchQualificationTypes.R | 23 ++-
R/SendTestEventNotification.R | 2
R/SetHITAsReviewing.R | 26 ++-
R/SetHITTypeNotification.R | 2
R/SufficientFunds.R | 2
R/UnblockWorker.R | 2
R/UpdateQualificationScore.R | 2
R/UpdateQualificationType.R | 5
R/WorkerReport.R | 2
R/asdataframe.R | 150 ++++++++++++----------
R/mturkr.wizard.R | 31 ++--
R/request.R | 26 ++-
R/wizard.simple.R | 107 ++++++++++-----
README.md | 3
inst/templates |only
man/AccountBalance.Rd | 12 -
man/ApproveAssignment.Rd | 32 ++--
man/AssignQualification.Rd | 42 +++---
man/BlockWorker.Rd | 13 +
man/ChangeHITType.Rd | 56 ++++++--
man/ContactWorker.Rd | 16 +-
man/CreateHIT.Rd | 46 ++++--
man/CreateQualificationType.Rd | 29 +++-
man/DisableHIT.Rd | 28 +++-
man/DisposeHIT.Rd | 28 +++-
man/DisposeQualificationType.Rd | 11 +
man/ExpireHIT.Rd | 20 ++
man/ExtendHIT.Rd | 31 +++-
man/GenerateAnswerKey.Rd | 1
man/GenerateExternalQuestion.Rd | 16 ++
man/GenerateHITLayoutParameter.Rd | 25 +++
man/GenerateHITsFromTemplate.Rd | 37 ++++-
man/GenerateHTMLQuestion.Rd | 14 +-
man/GenerateNotification.Rd | 6
man/GenerateQualificationRequirement.Rd | 4
man/GenerateReviewPolicy.Rd | 151 +++++++++++++++++++---
man/GetAssignment.Rd | 19 +-
man/GetBonuses.Rd | 25 ++-
man/GetFileUpload.Rd | 30 +++-
man/GetHIT.Rd | 40 ++++-
man/GetHITsForQualificationType.Rd | 4
man/GetQualificationRequests.Rd | 4
man/GetQualificationScore.Rd | 18 ++
man/GetQualificationType.Rd | 12 +
man/GetQualifications.Rd | 18 ++
man/GetReviewResultsForHIT.Rd | 20 +-
man/GetReviewableHITs.Rd | 4
man/GetStatistic.Rd | 13 +
man/GrantBonus.Rd | 10 -
man/GrantQualification.Rd | 5
man/MTurkR-package.Rd | 2
man/RegisterHITType.Rd | 6
man/RejectAssignment.Rd | 4
man/RejectQualification.Rd | 4
man/RevokeQualification.Rd | 20 ++
man/SearchHITs.Rd | 6
man/SearchQualificationTypes.Rd | 11 +
man/SendTestEventNotification.Rd | 23 ++-
man/SetHITAsReviewing.Rd | 22 ++-
man/SetHITTypeNotification.Rd | 20 ++
man/UpdateQualificationScore.Rd | 15 +-
man/UpdateQualificationType.Rd | 20 +-
man/request.Rd | 17 +-
man/seconds.Rd | 2
108 files changed, 1488 insertions(+), 826 deletions(-)
Title: Curculionidae INstar IDentification
Diff between CINID versions 1.1 dated 2014-09-30 and 1.2 dated 2014-10-07
Description: This package provides functions to compute a method for identifying the instar of Curculionid larvae from the observed distribution of the headcapsule size of mature larvae.
Author: Aurelie Siberchicot, Adrien Merville, Marie-Claude Bel-Venner and Samuel Venner
Maintainer: Aurelie Siberchicot
DESCRIPTION | 8 ++++----
MD5 | 12 ++++++------
NAMESPACE | 3 ++-
man/cinid-package.Rd | 14 +++++++-------
man/cinid.plot.Rd | 2 +-
man/cinid.table.Rd | 2 +-
man/s.oryzae.Rd | 2 +-
7 files changed, 22 insertions(+), 21 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-06 0.3.6
2014-07-22 0.3.5
2014-04-15 0.3.4
2014-04-01 0.3.3
2014-03-09 0.3
Title: Vector analysis using graphical and analytical methods in 3D
Diff between VecStatGraphs3D versions 1.5 dated 2013-03-01 and 1.6 dated 2014-10-07
More information about VecStatGraphs3D at CRAN
Description: This package performs a 3D statistical analysis, both numerical and graphical, of a set of vectors. Since a vector has three components (a module and two angles) vectorial analysis is performed in two stages: modules are analyzed by means of linear statistics and orientations are analyzed by spherical statistics. Tests and spherical statistic parameters are accompanied by a graphs as: density maps, distribution modules and angles. The tests, spherical statistic parameters and graphs allow us detecting another distribution properties (i.e. anisotropy) and outliers.
Author: Angel Felicisimo, Juan Carlos Ruiz Cuetos, Maria Eugenia Polo Garcia, Aurora Cuartero,
Pablo Garcia Rodriguez
Maintainer: Pablo Garcia Rodriguez
VecStatGraphs3D-1.5/VecStatGraphs3D/INDEX |only
VecStatGraphs3D-1.5/VecStatGraphs3D/R/Pause.R |only
VecStatGraphs3D-1.5/VecStatGraphs3D/R/ToCalculateError3D.R |only
VecStatGraphs3D-1.5/VecStatGraphs3D/R/VecStatGraphs3D-internal.R |only
VecStatGraphs3D-1.5/VecStatGraphs3D/man/Pause.Rd |only
VecStatGraphs3D-1.5/VecStatGraphs3D/man/ToCalculateError3D.Rd |only
VecStatGraphs3D-1.5/VecStatGraphs3D/man/VecStatGraphs3D-internal.Rd |only
VecStatGraphs3D-1.6/VecStatGraphs3D/DESCRIPTION | 23 -
VecStatGraphs3D-1.6/VecStatGraphs3D/MD5 | 111 ++--
VecStatGraphs3D-1.6/VecStatGraphs3D/R/AddCosVectors3D.R | 15
VecStatGraphs3D-1.6/VecStatGraphs3D/R/AddSinVectors3D.R | 17
VecStatGraphs3D-1.6/VecStatGraphs3D/R/AllAngleStatistics.R | 69 ++-
VecStatGraphs3D-1.6/VecStatGraphs3D/R/AllModuleStatistics3D.R | 79 ++-
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ArithmeticMean3D.R | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/R/Arrows3D.R | 44 -
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ConcentrationParameter3D.R | 31 -
VecStatGraphs3D-1.6/VecStatGraphs3D/R/CorrectType3D.R | 21
VecStatGraphs3D-1.6/VecStatGraphs3D/R/DrawDensity3D.R | 69 +--
VecStatGraphs3D-1.6/VecStatGraphs3D/R/DrawModuleAndAngleDistribution3D.R | 226 ++++------
VecStatGraphs3D-1.6/VecStatGraphs3D/R/KurtosisModuleCoefficient3D.R |only
VecStatGraphs3D-1.6/VecStatGraphs3D/R/LoadData3D.R | 101 +---
VecStatGraphs3D-1.6/VecStatGraphs3D/R/MaxValue3D.R | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/R/MeanAngle.R | 15
VecStatGraphs3D-1.6/VecStatGraphs3D/R/MeanDirection3D.R | 62 +-
VecStatGraphs3D-1.6/VecStatGraphs3D/R/MeanModule3D.R | 21
VecStatGraphs3D-1.6/VecStatGraphs3D/R/MinValue3D.R | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ModulePopulationStandardDeviation3D.R | 11
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ModulePopulationVariance3D.R | 11
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ModuleStandardDeviation3D.R | 11
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ModuleSum3D.R | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ModuleVariance3D.R | 11
VecStatGraphs3D-1.6/VecStatGraphs3D/R/NumberOfElements3D.R | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/R/Range3D.R | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/R/RayleighTest3D.R | 57 +-
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ReadFromFile3D.R | 18
VecStatGraphs3D-1.6/VecStatGraphs3D/R/RealModToUnitMod3D.R |only
VecStatGraphs3D-1.6/VecStatGraphs3D/R/SkewnessModuleCoefficient3D.R |only
VecStatGraphs3D-1.6/VecStatGraphs3D/R/Slider.R | 52 +-
VecStatGraphs3D-1.6/VecStatGraphs3D/R/SphericalStandardError3D.R | 62 +-
VecStatGraphs3D-1.6/VecStatGraphs3D/R/StandardError3D.R | 11
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ToCalculateIncr3D.R |only
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ToRadians3D.R | 9
VecStatGraphs3D-1.6/VecStatGraphs3D/R/ToSexagesimal3D.R | 9
VecStatGraphs3D-1.6/VecStatGraphs3D/R/Vectors3D.R | 137 ++----
VecStatGraphs3D-1.6/VecStatGraphs3D/R/VectorsToPolar3D.R | 55 +-
VecStatGraphs3D-1.6/VecStatGraphs3D/R/VectorsToRectangular3D.R | 39 -
VecStatGraphs3D-1.6/VecStatGraphs3D/man/AllAngleStatistics.Rd | 17
VecStatGraphs3D-1.6/VecStatGraphs3D/man/AllModuleStatistics3D.Rd | 9
VecStatGraphs3D-1.6/VecStatGraphs3D/man/ArithmeticMean3D.Rd | 2
VecStatGraphs3D-1.6/VecStatGraphs3D/man/Arrows3D.Rd | 2
VecStatGraphs3D-1.6/VecStatGraphs3D/man/ConcentrationParameter3D.Rd | 12
VecStatGraphs3D-1.6/VecStatGraphs3D/man/CorrectType3D.Rd | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/man/DrawDensity3D.Rd | 7
VecStatGraphs3D-1.6/VecStatGraphs3D/man/DrawModuleAndAngleDistribution3D.Rd | 11
VecStatGraphs3D-1.6/VecStatGraphs3D/man/KurtosisModuleCoefficient3D.Rd |only
VecStatGraphs3D-1.6/VecStatGraphs3D/man/LoadData3D.Rd | 13
VecStatGraphs3D-1.6/VecStatGraphs3D/man/MeanDirection3D.Rd | 2
VecStatGraphs3D-1.6/VecStatGraphs3D/man/MeanModule3D.Rd | 4
VecStatGraphs3D-1.6/VecStatGraphs3D/man/Range3D.Rd | 2
VecStatGraphs3D-1.6/VecStatGraphs3D/man/RayleighTest3D.Rd | 2
VecStatGraphs3D-1.6/VecStatGraphs3D/man/RealModToUnitMod3D.Rd |only
VecStatGraphs3D-1.6/VecStatGraphs3D/man/SkewnessModuleCoefficient3D.Rd |only
VecStatGraphs3D-1.6/VecStatGraphs3D/man/ToCalculateIncr3D.Rd |only
VecStatGraphs3D-1.6/VecStatGraphs3D/man/VectorsToPolar3D.Rd | 10
64 files changed, 733 insertions(+), 806 deletions(-)
Permanent link
Title: Digital PCR Analysis
Diff between dpcR versions 0.1.2-1 dated 2014-07-02 and 0.1.3.1 dated 2014-10-07
Description: Analysis, visualisation and simulation of digital PCR experiments.
Author: Michal Burdukiewicz [cre, aut],
Stefan Roediger [aut]
Maintainer: Michal Burdukiewicz
dpcR-0.1.2-1/dpcR/R/adpcr.R |only
dpcR-0.1.2-1/dpcR/R/ddpcr.R |only
dpcR-0.1.2-1/dpcR/R/dpcr.R |only
dpcR-0.1.2-1/dpcR/R/utility.R |only
dpcR-0.1.2-1/dpcR/man/plot-qpcrpp.Rd |only
dpcR-0.1.2-1/dpcR/man/qpcr_analyser-methods.Rd |only
dpcR-0.1.2-1/dpcR/man/test_peaks-methods.Rd |only
dpcR-0.1.3.1/dpcR/CHANGELOG | 6
dpcR-0.1.3.1/dpcR/DESCRIPTION | 41 ++-
dpcR-0.1.3.1/dpcR/MD5 | 133 +++++++----
dpcR-0.1.3.1/dpcR/NAMESPACE | 88 +++----
dpcR-0.1.3.1/dpcR/R/AUCtest.R |only
dpcR-0.1.3.1/dpcR/R/adpcr-class.R |only
dpcR-0.1.3.1/dpcR/R/adpcr2ppp.R |only
dpcR-0.1.3.1/dpcR/R/bind_dpcr.R |only
dpcR-0.1.3.1/dpcR/R/bioamp.R | 31 ++
dpcR-0.1.3.1/dpcR/R/calc_breaks.R |only
dpcR-0.1.3.1/dpcR/R/calc_lambda.R |only
dpcR-0.1.3.1/dpcR/R/compare_dens.R |only
dpcR-0.1.3.1/dpcR/R/count_test-class.R |only
dpcR-0.1.3.1/dpcR/R/create_dpcr.R |only
dpcR-0.1.3.1/dpcR/R/ddpcr-class.R |only
dpcR-0.1.3.1/dpcR/R/dpcR-package.R |only
dpcR-0.1.3.1/dpcR/R/dpcr_calculator.R |only
dpcR-0.1.3.1/dpcR/R/dpcr_density.R |only
dpcR-0.1.3.1/dpcR/R/dpcr_density_gui.R |only
dpcR-0.1.3.1/dpcR/R/extract_dpcr.R |only
dpcR-0.1.3.1/dpcR/R/fit_adpcr.R |only
dpcR-0.1.3.1/dpcR/R/fl.R |only
dpcR-0.1.3.1/dpcR/R/get_k_n.R |only
dpcR-0.1.3.1/dpcR/R/limit_cq.R |only
dpcR-0.1.3.1/dpcR/R/many_peaks.R |only
dpcR-0.1.3.1/dpcR/R/modlist.R |only
dpcR-0.1.3.1/dpcR/R/moments.R |only
dpcR-0.1.3.1/dpcR/R/num2int.R |only
dpcR-0.1.3.1/dpcR/R/pds.R |only
dpcR-0.1.3.1/dpcR/R/pds_raw.R |only
dpcR-0.1.3.1/dpcR/R/plot_distr.R |only
dpcR-0.1.3.1/dpcR/R/plot_panel.R |only
dpcR-0.1.3.1/dpcR/R/plot_vf_circ.R |only
dpcR-0.1.3.1/dpcR/R/plot_vic_fam.R |only
dpcR-0.1.3.1/dpcR/R/print_summary.R |only
dpcR-0.1.3.1/dpcR/R/qpcr_analyser.R |only
dpcR-0.1.3.1/dpcR/R/qpcrpp.R |only
dpcR-0.1.3.1/dpcR/R/rtadpcr.R |only
dpcR-0.1.3.1/dpcR/R/safe_efficiency.R |only
dpcR-0.1.3.1/dpcR/R/show_dpcr.R |only
dpcR-0.1.3.1/dpcR/R/sim_adpcr.R |only
dpcR-0.1.3.1/dpcR/R/sim_ddpcr.R |only
dpcR-0.1.3.1/dpcR/R/simulations.R | 2
dpcR-0.1.3.1/dpcR/R/summary_dpcr.R |only
dpcR-0.1.3.1/dpcR/R/test_counts.R |only
dpcR-0.1.3.1/dpcR/R/test_panel.R |only
dpcR-0.1.3.1/dpcR/R/test_peaks.R |only
dpcR-0.1.3.1/dpcR/R/test_ratio.R |only
dpcR-0.1.3.1/dpcR/R/valid_amp.R |only
dpcR-0.1.3.1/dpcR/R/y_val_conf.R |only
dpcR-0.1.3.1/dpcR/README.md | 2
dpcR-0.1.3.1/dpcR/build |only
dpcR-0.1.3.1/dpcR/data/many_peaks.rda |binary
dpcR-0.1.3.1/dpcR/data/pds.rda |binary
dpcR-0.1.3.1/dpcR/data/pds_raw.rda |binary
dpcR-0.1.3.1/dpcR/inst/doc |only
dpcR-0.1.3.1/dpcR/man/adpcr-class.Rd | 70 ++---
dpcR-0.1.3.1/dpcR/man/adpcr2ppp.Rd | 76 ++----
dpcR-0.1.3.1/dpcR/man/bind_dpcr-methods.Rd |only
dpcR-0.1.3.1/dpcR/man/bioamp.Rd | 88 +++----
dpcR-0.1.3.1/dpcR/man/compare_dens.Rd | 46 +--
dpcR-0.1.3.1/dpcR/man/count_test-class.Rd |only
dpcR-0.1.3.1/dpcR/man/create_dpcr.Rd | 99 +++-----
dpcR-0.1.3.1/dpcR/man/ddpcr-class.Rd | 67 ++---
dpcR-0.1.3.1/dpcR/man/dpcR-package.Rd | 85 +++----
dpcR-0.1.3.1/dpcR/man/dpcr_density.Rd | 144 +++++-------
dpcR-0.1.3.1/dpcR/man/dpcr_density_gui.Rd | 23 -
dpcR-0.1.3.1/dpcR/man/extract_dpcr.Rd | 56 ++--
dpcR-0.1.3.1/dpcR/man/limit_cq.Rd | 147 +++++-------
dpcR-0.1.3.1/dpcR/man/many_peaks.Rd | 26 --
dpcR-0.1.3.1/dpcR/man/moments-methods.Rd | 73 ++----
dpcR-0.1.3.1/dpcR/man/num2int.Rd |only
dpcR-0.1.3.1/dpcR/man/pds.Rd | 178 ++++++---------
dpcR-0.1.3.1/dpcR/man/pds_raw.Rd | 292 ++++++++++---------------
dpcR-0.1.3.1/dpcR/man/plot.qpcrpp.Rd |only
dpcR-0.1.3.1/dpcR/man/plot_panel.Rd | 109 +++++----
dpcR-0.1.3.1/dpcR/man/plot_vic_fam.Rd | 86 +++----
dpcR-0.1.3.1/dpcR/man/qpcr2pp.Rd | 133 +++++------
dpcR-0.1.3.1/dpcR/man/qpcr_analyser.Rd |only
dpcR-0.1.3.1/dpcR/man/qpcrpp-class.Rd | 50 +---
dpcR-0.1.3.1/dpcR/man/rtadpcr-class.Rd |only
dpcR-0.1.3.1/dpcR/man/show-methods.Rd | 28 +-
dpcR-0.1.3.1/dpcR/man/sim_adpcr.Rd | 155 ++++++-------
dpcR-0.1.3.1/dpcR/man/sim_ddpcr.Rd | 120 ++++------
dpcR-0.1.3.1/dpcR/man/summary-methods.Rd | 93 +++----
dpcR-0.1.3.1/dpcR/man/test_counts.Rd |only
dpcR-0.1.3.1/dpcR/man/test_panel.Rd | 126 ++++------
dpcR-0.1.3.1/dpcR/man/test_peaks.Rd |only
dpcR-0.1.3.1/dpcR/man/test_ratio.Rd | 213 ++++++++----------
dpcR-0.1.3.1/dpcR/vignettes |only
97 files changed, 1401 insertions(+), 1485 deletions(-)
Title: Functions for Systems Factorial Technology Analysis of Data
Diff between sft versions 1.0-1 dated 2013-11-11 and 2.0-7 dated 2014-10-07
Description: This package contains a series of tools for analyzing Systems Factorial Technology data. This includes functions for plotting and statistically testing capacity coefficient functions and survivor interaction contrast functions.
Author: Joe Houpt
Maintainer: Joe Houpt
DESCRIPTION | 8 -
MD5 | 31 ++-
NAMESPACE | 2
R/CapacityNA.R | 220 +++++++++++-----------------
R/assessment.R | 151 +++++++++++++++++++
R/capacitystst.R | 2
R/estimate.bounds.R | 14 -
R/fPCAcapacity.R | 380 +++++++++++++++++++++++++++----------------------
R/sic.R | 17 +-
R/ucipTest.R | 15 +
man/assessment.Rd | 21 +-
man/assessmentGroup.Rd |only
man/capacityGroup.Rd | 24 +--
man/estimate.bounds.Rd | 10 -
man/fPCAcapacity.Rd | 14 +
man/sicGroup.Rd | 1
man/ucip_test.Rd | 17 +-
17 files changed, 564 insertions(+), 363 deletions(-)
Title: Computation of Power and Level Tables for Hypothesis Tests
Diff between PoweR versions 1.0.2 dated 2014-10-05 and 1.0.3 dated 2014-10-07
Description: Functions for the computation of power and level tables for hypothesis tests, in LaTeX format, functions to build explanatory graphs for studying power of test statistics.
Author: Pierre Lafaye de Micheaux
Maintainer: P. Lafaye de Micheaux
DESCRIPTION | 10 +++++-----
MD5 | 10 +++++-----
man/law0019.LocationCont.Rd | 2 +-
man/law0022.ScaleCont.Rd | 2 +-
man/law0031.MixtureNormal.Rd | 2 +-
src/calcpuiss.cpp | 1 +
6 files changed, 14 insertions(+), 13 deletions(-)