Title: popRange: A spatially and temporally explicit forward genetic
simulator
Diff between popRange versions 1.1.2 dated 2014-10-04 and 1.1.3 dated 2014-10-13
Description: Runs a forward genetic simulator
Author: Kimberly F. McManus
Maintainer: Kimberly F. McManus
popRange-1.1.2/popRange/inst/config.pyc |only
popRange-1.1.2/popRange/inst/popRange_main.pyc |only
popRange-1.1.2/popRange/inst/setup_program.pyc |only
popRange-1.1.2/popRange/inst/writeOutput.pyc |only
popRange-1.1.3/popRange/DESCRIPTION | 12 +++---
popRange-1.1.3/popRange/MD5 | 27 ++++++++------
popRange-1.1.3/popRange/R/sim_package.r | 46 +++++++++++++++---------
popRange-1.1.3/popRange/inst/__pycache__ |only
popRange-1.1.3/popRange/inst/config.py | 10 +++--
popRange-1.1.3/popRange/inst/config_3.py |only
popRange-1.1.3/popRange/inst/popRange_main.py | 42 +++++++++++++++------
popRange-1.1.3/popRange/inst/popRange_main_3.py |only
popRange-1.1.3/popRange/inst/setup_program.py | 4 ++
popRange-1.1.3/popRange/inst/setup_program_3.py |only
popRange-1.1.3/popRange/inst/writeOutput_3.py |only
popRange-1.1.3/popRange/man/popRange-package.Rd | 6 +--
popRange-1.1.3/popRange/man/popRangeSim.Rd | 6 +--
17 files changed, 97 insertions(+), 56 deletions(-)
Title: Toolkit for Electroencephalography Data
Diff between eegkit versions 1.0-0 dated 2014-09-09 and 1.0-1 dated 2014-10-13
Description: Analysis and visualization tools for electroencephalography (EEG) data. Includes functions for plotting (a) EEG caps, (b) single- and multi-channel EEG time courses, and (c) EEG spatial maps. Also includes smoothing and Independent Component Analysis functions for EEG data analysis, and a function for simulating event-related potential EEG data.
Author: Nathaniel E. Helwig
Maintainer: Nathaniel E. Helwig
ChangeLog |only
DESCRIPTION | 12 ++++++------
MD5 | 41 ++++++++++++++++++++++++-----------------
R/eegcap.R | 7 +++++--
R/eegcapdense.R |only
R/eegsim.R |only
R/eegtimemc.R |only
data/eegcoord.rda |binary
data/eegdense.rda |binary
data/eeghead.rda |binary
data/eegmesh.rda |binary
man/eegcap.Rd | 11 +++++++----
man/eegcapdense.Rd |only
man/eegcoord.Rd | 2 +-
man/eegdense.Rd | 2 +-
man/eeghead.Rd | 2 +-
man/eegica.Rd | 4 ++--
man/eegkit-internal.Rd | 12 +++++++++++-
man/eegkit-package.Rd | 16 +++++++++-------
man/eegmesh.Rd | 2 +-
man/eegsim.Rd |only
man/eegsmooth.Rd | 6 ++++--
man/eegspace.Rd | 2 +-
man/eegtime.Rd | 2 +-
man/eegtimemc.Rd |only
25 files changed, 74 insertions(+), 47 deletions(-)
Title: Statistical Methods for Anthropometric Data
Diff between Anthropometry versions 1.0 dated 2014-03-07 and 1.1 dated 2014-10-13
Description: Anthropometry brings together some statistical methodologies especially developed to analyze anthropometric data. These methods are aimed at providing effective solutions to some commons problems related to Ergonomics and Anthropometry. They are based on clustering, the statistical concept of data depth, statistical shape analysis and archetypal analysis.
Author: Guillermo Vinue, Irene Epifanio, Amelia Simo, M. Victoria Ibanez, Juan Domingo, Guillermo Ayala
Maintainer: Guillermo Vinue
DESCRIPTION | 20 -
MD5 | 69 +--
NAMESPACE | 4
NEWS |only
R/Anthropometry-internalArchetypoids.R | 21 -
R/Anthropometry-internalDepth.R | 53 ++
R/HartiganShapes.R | 29 +
R/LloydShapes.R | 29 +
R/TDDclust.R | 57 +-
R/stepArchetypoids.R | 2
inst/doc/Anthropometry.R | 325 ++++++++--------
inst/doc/Anthropometry.Rnw | 650 ++++++++++++++++++++-------------
inst/doc/Anthropometry.pdf |binary
man/Anthropometry-package.Rd | 8
man/HartiganShapes.Rd | 10
man/LloydShapes.Rd | 10
man/TDDclust.Rd | 30 -
man/archetypoids.Rd | 8
man/cube34.Rd | 2
man/cube8.Rd | 2
man/figures8landm.Rd | 2
man/hipamAnthropom.Rd | 6
man/landmarks.Rd | 2
man/optraProcrustes.Rd | 2
man/parallelepiped34.Rd | 2
man/parallelepiped8.Rd | 2
man/plotMedoids.Rd | 6
man/plotTrimmOutl.Rd | 2
man/qtranProcrustes.Rd | 2
man/stepArchetypesMod.Rd | 2
man/stepArchetypoids.Rd | 6
man/trimmedLloydShapes.Rd | 2
man/trimowa.Rd | 6
vignettes/Anthropometry.Rnw | 650 ++++++++++++++++++++-------------
vignettes/Anthropometry.bib | 193 ++++-----
vignettes/decisionTree_Rpackage.pdf |only
vignettes/decisionTree_Rpackage_1.pdf |only
37 files changed, 1317 insertions(+), 897 deletions(-)
Title: Stack and Reshape Datasets After Splitting Concatenated Values
Diff between splitstackshape versions 1.2.0 dated 2013-08-27 and 1.4.0 dated 2014-10-13
More information about splitstackshape at CRAN
Description: Online data collection tools like Google Forms often export
multiple-response questions with data concatenated in cells. The
concat.split (cSplit) family of functions splits such data into
separate cells. The package also includes functions to stack groups
of columns and to reshape wide data, even when the data are
"unbalanced"---something which reshape (from base R) does not handle,
and which melt and dcast from reshape2 do not easily handle.
Author: Ananda Mahto
Maintainer: Ananda Mahto
splitstackshape-1.2.0/splitstackshape/man/binaryMat.Rd |only
splitstackshape-1.2.0/splitstackshape/man/valueMat.Rd |only
splitstackshape-1.4.0/splitstackshape/DESCRIPTION | 26
splitstackshape-1.4.0/splitstackshape/MD5 | 64 +
splitstackshape-1.4.0/splitstackshape/NAMESPACE | 13
splitstackshape-1.4.0/splitstackshape/NEWS | 126 +++
splitstackshape-1.4.0/splitstackshape/R/Reshape.R | 16
splitstackshape-1.4.0/splitstackshape/R/Stacked.R | 104 ++-
splitstackshape-1.4.0/splitstackshape/R/cSplit.R |only
splitstackshape-1.4.0/splitstackshape/R/cSplit_f.R |only
splitstackshape-1.4.0/splitstackshape/R/concat.split.R | 327 +++++-----
splitstackshape-1.4.0/splitstackshape/R/expandRows.R |only
splitstackshape-1.4.0/splitstackshape/R/getanID.R | 35 -
splitstackshape-1.4.0/splitstackshape/R/splitstackshape-package.R | 35 -
splitstackshape-1.4.0/splitstackshape/R/splitstackshape_helper_functions.R | 155 ++--
splitstackshape-1.4.0/splitstackshape/R/stratified.R |only
splitstackshape-1.4.0/splitstackshape/README.md | 16
splitstackshape-1.4.0/splitstackshape/man/FacsToChars.Rd | 24
splitstackshape-1.4.0/splitstackshape/man/Names.Rd | 18
splitstackshape-1.4.0/splitstackshape/man/NoSep.Rd | 26
splitstackshape-1.4.0/splitstackshape/man/Reshape.Rd | 67 --
splitstackshape-1.4.0/splitstackshape/man/Stacked.Rd | 74 +-
splitstackshape-1.4.0/splitstackshape/man/cSplit.Rd |only
splitstackshape-1.4.0/splitstackshape/man/cSplit_f.Rd |only
splitstackshape-1.4.0/splitstackshape/man/charMat.Rd |only
splitstackshape-1.4.0/splitstackshape/man/concat.split.Rd | 137 +---
splitstackshape-1.4.0/splitstackshape/man/concat.split.compact.Rd | 51 -
splitstackshape-1.4.0/splitstackshape/man/concat.split.expanded.Rd | 71 +-
splitstackshape-1.4.0/splitstackshape/man/concat.split.list.Rd | 46 -
splitstackshape-1.4.0/splitstackshape/man/concat.split.multiple.Rd | 49 -
splitstackshape-1.4.0/splitstackshape/man/concat.test.Rd | 10
splitstackshape-1.4.0/splitstackshape/man/expandRows.Rd |only
splitstackshape-1.4.0/splitstackshape/man/getanID.Rd | 25
splitstackshape-1.4.0/splitstackshape/man/merged.stack.Rd | 50 -
splitstackshape-1.4.0/splitstackshape/man/numMat.Rd |only
splitstackshape-1.4.0/splitstackshape/man/othernames.Rd | 19
splitstackshape-1.4.0/splitstackshape/man/read.concat.Rd | 25
splitstackshape-1.4.0/splitstackshape/man/splitstackshape-package.Rd | 38 -
splitstackshape-1.4.0/splitstackshape/man/stratified.Rd |only
39 files changed, 917 insertions(+), 730 deletions(-)
Permanent link
Title: rcdk - Interface to the CDK Libraries
Diff between rcdk versions 3.3.1 dated 2014-10-07 and 3.3.2 dated 2014-10-13
Description: This package allows the user to access functionality in the
CDK, a Java framework for cheminformatics. This allows the user to load
molecules, evaluate fingerprints, calculate molecular descriptors and so on.
In addition the CDK API allows the user to view structures in 2D.
Author: Rajarshi Guha [aut, cre, cph]
Maintainer: Rajarshi Guha
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/desc.R | 6 +++++-
inst/doc/rcdk.pdf |binary
4 files changed, 12 insertions(+), 8 deletions(-)
Title: Tools for Management of Survey Data, Graphics, Programming,
Statistics, and Simulation
Diff between memisc versions 0.96-9 dated 2013-12-06 and 0.96-10 dated 2014-10-13
Description: One of the aims of this package is to make life easier for
useRs who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) SPSS and
Stata files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates. Also some convenience tools for graphics,
programming, and simulation are provided.
Author: Martin Elff (with contributions by Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, and Achim Zeileis)
Maintainer: Martin Elff
DESCRIPTION | 11 ++--
MD5 | 35 +++++++------
R/aggregateFormula.R | 4 -
R/import-internal-spss-portable.R | 4 -
R/import-internal-spss-syntax.R | 14 ++---
R/import-internal-spss-sysfile.R | 3 -
R/mtable.R | 2
R/recode.R | 6 +-
R/spss-portable-methods.R | 8 ++-
R/spss-syntax-methods.R | 28 +++++++++--
R/spss-sysfile-methods.R | 9 +++
R/yy-mtable-ext-ChristopherNLawrence.R | 84 ++++++++++++++++-----------------
R/yz-getSummary-merMod.R |only
R/zzz.R | 7 --
build/vignette.rds |binary
inst/NEWS | 19 +++++++
inst/doc/anes48.pdf |binary
man/importers.Rd | 10 ++-
src/readfixed.c | 6 +-
19 files changed, 154 insertions(+), 96 deletions(-)
Title: SemiParametric Transformation Model Methods
Diff between sptm versions 14.10-8 dated 2014-10-10 and 14.10-11 dated 2014-10-13
Description: Semiparametric transformation model, calibration weights
Author: Youyi Fong
Maintainer: Youyi Fong
ChangeLog | 2 ++
DESCRIPTION | 6 +++---
MD5 | 6 +++---
src/stm.cpp | 20 +++++++++-----------
4 files changed, 17 insertions(+), 17 deletions(-)
Title: Multiscale Bernstein Polynomials for Densities
Diff between msBP versions 1.0 dated 2014-10-07 and 1.0-1 dated 2014-10-13
Description: Performs Bayesian nonparametric multiscale density estimation and multiscale testing of group differences with multiscale Bernstein polynomials (msBP) mixtures as in Canale and Dunson (2014).
Author: Antonio Canale
Maintainer: Antonio Canale
ChangeLog |only
DESCRIPTION | 8 ++--
MD5 | 43 ++++++++++++------------
R/msBP.Gibbs.R | 4 +-
R/msBP.density.R | 4 +-
R/msBP.nrvTrees.R | 2 -
R/msBP.postCluster.R | 2 -
R/msBP.rsample.R | 2 -
R/msBP.rtree.R | 2 -
man/msBP-package.Rd | 2 -
man/msBP.Gibbs.Rd | 10 ++---
man/msBP.compute.prob.Rd | 2 -
man/msBP.density.Rd | 2 -
man/msBP.nrvTrees.Rd | 4 +-
man/msBP.postCluster.Rd | 3 +
man/msBP.rsample.Rd | 2 -
man/msBP.rtree.Rd | 2 -
man/msBP.test.Rd | 2 -
man/msBP.tree.Rd | 2 -
src/auxGibbs.cpp | 12 +++---
src/bintree.cpp | 7 +--
src/gibbs.cpp | 11 ++----
src/msBP.cpp | 84 +++++++++++++----------------------------------
23 files changed, 90 insertions(+), 122 deletions(-)
Title: A general-purpose package for dynamic report generation in R
Diff between knitr versions 1.6 dated 2014-05-25 and 1.7 dated 2014-10-13
Description: This package provides a general-purpose tool for dynamic report
generation in R, which can be used to deal with any type of (plain text)
files, including Sweave, HTML, Markdown, reStructuredText, AsciiDoc, and
Textile. R code is evaluated as if it were copied and pasted in an R
terminal thanks to the evaluate package (e.g., we do not need to explicitly
print() plots from ggplot2 or lattice). R code can be reformatted by the
formatR package so that long lines are automatically wrapped, with indent
and spaces added, and comments preserved. A simple caching mechanism is
provided to cache results from computations for the first time and the
computations will be skipped the next time. Almost all common graphics
devices, including those in base R and add-on packages like Cairo,
cairoDevice and tikzDevice, are built-in with this package and it is
straightforward to switch between devices without writing any special
functions. The width and height as well as alignment of plots in the output
document can be specified in chunk options (the size of plots for graphics
devices is also supported). Multiple plots can be recorded in a single code
chunk, and it is also allowed to rearrange plots to the end of a chunk or
just keep the last plot. Warnings, messages and errors are written in the
output document by default (can be turned off). The large collection of
hooks in this package makes it possible for the user to control almost
everything in the R code input and output. Hooks can be used either to
format the output or to run R code fragments before or after a code chunk.
The language in code chunks is not restricted to R (there is simple support
to Python and shell scripts, etc). Many features are borrowed from or
inspired by Sweave, cacheSweave, pgfSweave, brew and decumar.
Author: Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Ashley Manton [ctb],
Brian Diggs [ctb],
Cassio Pereira [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Hadley Wickham [ctb],
Heewon Jeon [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jeff Arnold [ctb],
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
John Honaker [ctb],
Jonathan Keane [ctb],
J.J. Allaire [ctb],
Johan Toloe [ctb],
Joseph Larmarange [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Michael Friendly [ctb],
Michel Kuhlmann [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Noam Ross [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Romain Francois [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Taiyun Wei [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie
knitr-1.6/knitr/vignettes/assets/fix-bootstrap.css |only
knitr-1.7/knitr/DESCRIPTION | 24
knitr-1.7/knitr/MD5 | 190 +--
knitr-1.7/knitr/NAMESPACE | 4
knitr-1.7/knitr/R/block.R | 58 -
knitr-1.7/knitr/R/cache.R | 15
knitr-1.7/knitr/R/concordance.R | 2
knitr-1.7/knitr/R/defaults.R | 31
knitr-1.7/knitr/R/engine.R | 45
knitr-1.7/knitr/R/header.R | 8
knitr-1.7/knitr/R/highlight.R | 20
knitr-1.7/knitr/R/hooks-chunk.R | 4
knitr-1.7/knitr/R/hooks-extra.R | 90 -
knitr-1.7/knitr/R/hooks-html.R | 18
knitr-1.7/knitr/R/hooks-latex.R | 78 -
knitr-1.7/knitr/R/hooks-md.R | 13
knitr-1.7/knitr/R/hooks.R | 4
knitr-1.7/knitr/R/output.R | 77 +
knitr-1.7/knitr/R/package.R | 2
knitr-1.7/knitr/R/parser.R | 30
knitr-1.7/knitr/R/pattern.R | 20
knitr-1.7/knitr/R/plot.R | 50
knitr-1.7/knitr/R/spin.R | 2
knitr-1.7/knitr/R/table.R | 78 -
knitr-1.7/knitr/R/template.R | 2
knitr-1.7/knitr/R/themes-eclipse.R | 9
knitr-1.7/knitr/R/themes.R | 15
knitr-1.7/knitr/R/utils-conversion.R | 7
knitr-1.7/knitr/R/utils-sweave.R | 17
knitr-1.7/knitr/R/utils-upload.R | 5
knitr-1.7/knitr/R/utils-vignettes.R | 83 +
knitr-1.7/knitr/R/utils.R | 114 +-
knitr-1.7/knitr/README.md | 24
knitr-1.7/knitr/build/knitr.pdf |binary
knitr-1.7/knitr/build/vignette.rds |binary
knitr-1.7/knitr/inst/doc/datatables.Rmd | 10
knitr-1.7/knitr/inst/doc/datatables.html | 1139 ++++++++++----------
knitr-1.7/knitr/inst/doc/docco-classic.html | 5
knitr-1.7/knitr/inst/doc/docco-linear.html | 5
knitr-1.7/knitr/inst/doc/knit_expand.html | 23
knitr-1.7/knitr/inst/doc/knit_print.R | 2
knitr-1.7/knitr/inst/doc/knit_print.Rmd | 15
knitr-1.7/knitr/inst/doc/knit_print.html | 62 -
knitr-1.7/knitr/inst/doc/knitr-html.Rhtml | 3
knitr-1.7/knitr/inst/doc/knitr-html.html | 3
knitr-1.7/knitr/inst/doc/knitr-intro.R | 17
knitr-1.7/knitr/inst/doc/knitr-intro.Rmd | 31
knitr-1.7/knitr/inst/doc/knitr-intro.html | 117 +-
knitr-1.7/knitr/inst/doc/knitr-markdown.html | 20
knitr-1.7/knitr/inst/doc/knitr-refcard.pdf |binary
knitr-1.7/knitr/inst/examples/child/knitr-child.Rmd | 1
knitr-1.7/knitr/inst/examples/knitr-graphics.Rnw | 6
knitr-1.7/knitr/inst/examples/knitr-graphics.lyx | 7
knitr-1.7/knitr/inst/examples/knitr-listings.Rnw | 2
knitr-1.7/knitr/inst/examples/knitr-listings.lyx | 2
knitr-1.7/knitr/inst/examples/knitr-manual.Rnw | 39
knitr-1.7/knitr/inst/examples/knitr-manual.lyx | 24
knitr-1.7/knitr/inst/examples/knitr-minimal.Rmd | 3
knitr-1.7/knitr/inst/examples/knitr-minimal.Rnw | 2
knitr-1.7/knitr/inst/examples/knitr-minimal.lyx | 2
knitr-1.7/knitr/inst/examples/knitr-packages.bib | 11
knitr-1.7/knitr/inst/examples/knitr-spin.html | 33
knitr-1.7/knitr/inst/examples/knitr-themes.Rnw | 6
knitr-1.7/knitr/inst/examples/knitr-themes.lyx | 25
knitr-1.7/knitr/inst/misc/datatables.html | 6
knitr-1.7/knitr/inst/misc/docco-classic.html | 3
knitr-1.7/knitr/inst/misc/docco-template.html | 3
knitr-1.7/knitr/inst/misc/knitr-template.Rhtml | 1
knitr-1.7/knitr/inst/misc/vignette.css |only
knitr-1.7/knitr/inst/misc/vignette.html |only
knitr-1.7/knitr/inst/opencpu/apps/index.html | 8
knitr-1.7/knitr/man/all_patterns.Rd | 2
knitr-1.7/knitr/man/chunk_hook.Rd | 19
knitr-1.7/knitr/man/eclipse_theme.Rd | 2
knitr-1.7/knitr/man/fig_path.Rd | 22
knitr-1.7/knitr/man/hook_plot.Rd | 10
knitr-1.7/knitr/man/imgur_upload.Rd | 2
knitr-1.7/knitr/man/kable.Rd | 15
knitr-1.7/knitr/man/knit.Rd | 23
knitr-1.7/knitr/man/knit2html.Rd | 7
knitr-1.7/knitr/man/knit2pdf.Rd | 21
knitr-1.7/knitr/man/knit2wp.Rd | 4
knitr-1.7/knitr/man/knit_child.Rd | 14
knitr-1.7/knitr/man/knit_engines.Rd | 2
knitr-1.7/knitr/man/knit_patterns.Rd | 4
knitr-1.7/knitr/man/knit_print.Rd | 2
knitr-1.7/knitr/man/knit_theme.Rd | 9
knitr-1.7/knitr/man/opts_knit.Rd | 8
knitr-1.7/knitr/man/pat_fun.Rd | 2
knitr-1.7/knitr/man/stitch.Rd | 7
knitr-1.7/knitr/man/vignette_engines.Rd |only
knitr-1.7/knitr/tests/testit/test-cache.R | 16
knitr-1.7/knitr/tests/testit/test-table.R | 23
knitr-1.7/knitr/tests/testit/test-utils.R | 6
knitr-1.7/knitr/vignettes/datatables.Rmd | 10
knitr-1.7/knitr/vignettes/knit_print.Rmd | 15
knitr-1.7/knitr/vignettes/knitr-html.Rhtml | 3
knitr-1.7/knitr/vignettes/knitr-intro.Rmd | 31
98 files changed, 1752 insertions(+), 1302 deletions(-)
Title: An interface to the NOAA Operational Model Archive and
Distribution System
Diff between rNOMADS versions 2.0.2 dated 2014-09-02 and 2.0.3 dated 2014-10-13
Description: An interface to the National Oceanic and Atmospheric Administration's Operational Model Archive and Distribution System (NOMADS) that allows R users to quickly and efficiently download global and regional weather model data for processing. rNOMADS currently supports a variety of models ranging from global weather data to an altitude of 40 km, to high resolution regional weather models, to wave and sea ice models. It can also retrieve archived NOMADS models. rNOMADS can retrieve binary data in grib format as well as import ascii data directly into R by interfacing with the GrADS-DODS system.
Author: Daniel C. Bowman [aut, cre]
Maintainer: Daniel C. Bowman
DESCRIPTION | 8 +-
MD5 | 12 +--
NEWS | 5 +
R/GetDODS.R | 152 +++++++++++++++++++++++----------------------
R/Models.R | 36 ++++++----
man/DODSGrab.Rd | 12 ++-
man/GetDODSModelRunInfo.Rd | 8 +-
7 files changed, 129 insertions(+), 104 deletions(-)
Title: R and Impala
Diff between RImpala versions 0.1.4 dated 2014-09-10 and 0.1.5 dated 2014-10-13
Description: RImpala facilitates the connection and execution of distributed queries using Cloudera Impala, which is a massively parallel processing (MPP) SQL query engine that runs natively in Apache Hadoop. Impala supports jdbc integration which RImpala utilizes to establish the connection between R and Impala. Thanks to Mu Sigma for their continued support throughout the development of the package.
Author: Vijay Raajaa, Austin Chungath Vincent, Sachin Sudarshana, Vikas Raguttahalli
Maintainer: Vijay Raajaa
DESCRIPTION | 10 +++++-----
MD5 | 24 ++++++++++++------------
man/RImpala.Rd | 1 +
man/RImpala_close.Rd | 1 +
man/RImpala_connect.Rd | 1 +
man/RImpala_describe.Rd | 1 +
man/RImpala_init.Rd | 1 +
man/RImpala_invalidate.Rd | 1 +
man/RImpala_query.Rd | 1 +
man/RImpala_refresh.Rd | 1 +
man/RImpala_showdatabases.Rd | 1 +
man/RImpala_showtables.Rd | 1 +
man/RImpala_usedatabase.Rd | 1 +
13 files changed, 28 insertions(+), 17 deletions(-)
Title: Multichannel wavelet deconvolution with additive long memory
noise
Diff between mwaved versions 1.0.1 dated 2014-08-09 and 1.1.0 dated 2014-10-13
Description: Computes the Wavelet deconvolution estimate of a common signal
present in multiple channels that have possible different levels of blur
and long memory additive error.
Author: Justin Rory Wishart
Maintainer: Justin Rory Wishart
DESCRIPTION | 11 -
MD5 | 73 ++++---
NAMESPACE | 6
NEWS | 14 +
R/functions.R | 237 ++++++++++++++++---------
R/makeFunctions.R | 35 ++-
R/utility-mwaved.R | 177 ++++++++++--------
README.md | 4
TODO |only
build |only
inst/doc |only
inst/mWaveDDemo/server.R | 272 +++++++++-------------------
inst/mWaveDDemo/ui.R | 19 +-
man/blurSignal.Rd | 2
man/boxcarBlur.Rd | 10 -
man/detectBlur.Rd |only
man/directBlur.Rd | 10 -
man/gammaBlur.Rd | 2
man/mWaveDDemo.Rd | 2
man/makeSignals.Rd | 7
man/multiCoef.Rd | 24 +-
man/multiEstimate.Rd | 25 +-
man/multiNoise.Rd | 6
man/multiProj.Rd | 2
man/multiSigma.Rd | 5
man/multiThresh.Rd | 29 +--
man/multiWaveD.Rd | 28 +-
man/mwaved.Rd | 2
man/plot.mWaveD.Rd | 6
man/plot.waveletCoef.Rd | 2
man/resolutionMethod.Rd |only
man/sigmaSNR.Rd | 2
man/summary.mWaveD.Rd | 2
man/theoreticalEta.Rd |only
man/waveletThresh.Rd | 6
src/RcppExports.cpp | 97 ++++++++--
src/mwaved.cpp | 441 +++++++++++++++++++++++++++++++----------------
tests |only
vignettes |only
39 files changed, 919 insertions(+), 639 deletions(-)
Title: Unified access to your data sources
Diff between datamart versions 0.4.2 dated 2013-07-22 and 0.5.2 dated 2014-10-13
Description: Provides an S4 infrastructure for unified handling
of internal datasets and web based data sources. The package is
currently in beta; things may break, change or go away without
warning.
Author: Karsten Weinert
Maintainer: Karsten Weinert
datamart-0.4.2/datamart/R/007_Res.R |only
datamart-0.4.2/datamart/R/010_Twttr.R |only
datamart-0.4.2/datamart/R/020_Xsparql.R |only
datamart-0.4.2/datamart/R/040_InternalData.R |only
datamart-0.4.2/datamart/R/045_Evs.R |only
datamart-0.4.2/datamart/R/065_UrlData3.R |only
datamart-0.4.2/datamart/R/200_Eurostat.R |only
datamart-0.4.2/datamart/R/212_UnitSetManager.R |only
datamart-0.4.2/datamart/R/236_put.R |only
datamart-0.4.2/datamart/R/250_Blogger.R |only
datamart-0.4.2/datamart/R/310_OddsPortal.r |only
datamart-0.4.2/datamart/man/Eurostat-class.Rd |only
datamart-0.4.2/datamart/man/Evs-class.Rd |only
datamart-0.4.2/datamart/man/Mashup-class.Rd |only
datamart-0.4.2/datamart/man/OddsPortal-class.Rd |only
datamart-0.4.2/datamart/man/Resource-class.Rd |only
datamart-0.4.2/datamart/man/Twttr-class.Rd |only
datamart-0.4.2/datamart/man/UrlData3-class.Rd |only
datamart-0.4.2/datamart/man/mySPARQL.Rd |only
datamart-0.4.2/datamart/man/siunit.Rd |only
datamart-0.5.2/datamart/DESCRIPTION | 26 --
datamart-0.5.2/datamart/MD5 | 200 +++++++++--------
datamart-0.5.2/datamart/NAMESPACE | 48 ++--
datamart-0.5.2/datamart/NEWS | 51 ++++
datamart-0.5.2/datamart/R/000_datamart-doc.r | 12 -
datamart-0.5.2/datamart/R/002_meta.R | 3
datamart-0.5.2/datamart/R/003_dependencies.R |only
datamart-0.5.2/datamart/R/004_query.R | 11
datamart-0.5.2/datamart/R/006_Xdata.R | 20 +
datamart-0.5.2/datamart/R/010_as.character.R |only
datamart-0.5.2/datamart/R/025_Xsparql.R |only
datamart-0.5.2/datamart/R/030_Dbpedia.R | 93 ++-----
datamart-0.5.2/datamart/R/035_Enipedia.R |only
datamart-0.5.2/datamart/R/036_enipedia_countries.R |only
datamart-0.5.2/datamart/R/037_OpenEI.R |only
datamart-0.5.2/datamart/R/041_InternalData.R |only
datamart-0.5.2/datamart/R/065_UrlData.R |only
datamart-0.5.2/datamart/R/080_iwv.R | 9
datamart-0.5.2/datamart/R/090_Mashup.R | 147 ++++++++----
datamart-0.5.2/datamart/R/100_Evs.R |only
datamart-0.5.2/datamart/R/102_evs2008.lvl2.R |only
datamart-0.5.2/datamart/R/110_SourceForge.R | 15 -
datamart-0.5.2/datamart/R/120_Gapminder.R |only
datamart-0.5.2/datamart/R/220_UnitSetManager2.R |only
datamart-0.5.2/datamart/R/231_DirectoryLocation.R | 18 +
datamart-0.5.2/datamart/R/232_Target.R | 4
datamart-0.5.2/datamart/R/233_put.R |only
datamart-0.5.2/datamart/R/235_MemoryLocation.R |only
datamart-0.5.2/datamart/R/237_FileTarget.R | 14 +
datamart-0.5.2/datamart/R/240_SftpLocation.R |only
datamart-0.5.2/datamart/R/245_BlogPostTarget.R | 46 +++
datamart-0.5.2/datamart/R/252_MdFigure.R | 4
datamart-0.5.2/datamart/R/255_MdReport.R | 169 +++++++-------
datamart-0.5.2/datamart/R/260_SweaveReport.R | 8
datamart-0.5.2/datamart/R/270_CityCoords.R | 51 ++++
datamart-0.5.2/datamart/R/290_Pastebin.R | 34 +-
datamart-0.5.2/datamart/R/300_NetConnectGermany.R | 24 +-
datamart-0.5.2/datamart/R/305_ResFun.R |only
datamart-0.5.2/datamart/R/320_WebLocation.R |only
datamart-0.5.2/datamart/R/335_CsvData.R |only
datamart-0.5.2/datamart/R/380_Sonntagsfrage.r |only
datamart-0.5.2/datamart/R/385_GoogleOAuth2.R |only
datamart-0.5.2/datamart/R/390_Blogger.R |only
datamart-0.5.2/datamart/R/999_rcheck_hack.R |only
datamart-0.5.2/datamart/R/mem.info.R | 15 -
datamart-0.5.2/datamart/R/strexts.R | 25 +-
datamart-0.5.2/datamart/data/enipedia_countries.csv.gz |only
datamart-0.5.2/datamart/data/enipedia_countries.rda |only
datamart-0.5.2/datamart/data/evs2008.lvl2.rda |binary
datamart-0.5.2/datamart/man/BlogPostTarget-class.Rd | 34 +-
datamart-0.5.2/datamart/man/Blogger-class.Rd | 51 ++--
datamart-0.5.2/datamart/man/CsvData-class.Rd |only
datamart-0.5.2/datamart/man/Dbpedia-class.Rd | 20 +
datamart-0.5.2/datamart/man/DirectoryLocation-class.Rd | 25 +-
datamart-0.5.2/datamart/man/FileTarget-class.Rd | 25 +-
datamart-0.5.2/datamart/man/GoogleOAuth2-class.Rd |only
datamart-0.5.2/datamart/man/InternalData-class.Rd | 23 +
datamart-0.5.2/datamart/man/Location-class.Rd | 6
datamart-0.5.2/datamart/man/MdFigure-class.Rd | 23 +
datamart-0.5.2/datamart/man/MdReport-class.Rd | 51 ++--
datamart-0.5.2/datamart/man/MemoryLocation-class.Rd | 6
datamart-0.5.2/datamart/man/MemoryLocation2-class.Rd |only
datamart-0.5.2/datamart/man/Pastebin-class.Rd | 31 +-
datamart-0.5.2/datamart/man/ResFunc-class.Rd |only
datamart-0.5.2/datamart/man/SftpLocation-class.Rd |only
datamart-0.5.2/datamart/man/SweaveReport-class.Rd | 36 +--
datamart-0.5.2/datamart/man/Target-class.Rd | 4
datamart-0.5.2/datamart/man/UrlData-class.Rd |only
datamart-0.5.2/datamart/man/WebLocation-class.Rd |only
datamart-0.5.2/datamart/man/Xdata-class.Rd | 22 +
datamart-0.5.2/datamart/man/Xsparql-class.Rd | 28 --
datamart-0.5.2/datamart/man/address_lookup.Rd |only
datamart-0.5.2/datamart/man/allensbach.Rd |only
datamart-0.5.2/datamart/man/as.character-methods.Rd | 29 ++
datamart-0.5.2/datamart/man/city_coords.Rd | 16 -
datamart-0.5.2/datamart/man/csvdata.Rd |only
datamart-0.5.2/datamart/man/datamart-package.Rd |only
datamart-0.5.2/datamart/man/datamart.Rd | 69 ++---
datamart-0.5.2/datamart/man/dependencies-methods.Rd |only
datamart-0.5.2/datamart/man/enipedia.Rd |only
datamart-0.5.2/datamart/man/enipedia_countries.Rd |only
datamart-0.5.2/datamart/man/evs2008.lvl2.Rd |only
datamart-0.5.2/datamart/man/expenditures.Rd |only
datamart-0.5.2/datamart/man/gapminder.Rd |only
datamart-0.5.2/datamart/man/google.oauth2.Rd |only
datamart-0.5.2/datamart/man/iwv_online.Rd | 18 -
datamart-0.5.2/datamart/man/localappdir.Rd | 13 -
datamart-0.5.2/datamart/man/mem.info.Rd | 21 -
datamart-0.5.2/datamart/man/meta-methods.Rd | 44 +++
datamart-0.5.2/datamart/man/netConnectGermany.Rd | 12 -
datamart-0.5.2/datamart/man/openei.Rd |only
datamart-0.5.2/datamart/man/put-methods.Rd | 60 ++++-
datamart-0.5.2/datamart/man/queries-methods.Rd | 40 ++-
datamart-0.5.2/datamart/man/query-methods.Rd | 101 ++++++--
datamart-0.5.2/datamart/man/read.csvdata.Rd |only
datamart-0.5.2/datamart/man/read.google.oauth2.Rd |only
datamart-0.5.2/datamart/man/resalias.Rd |only
datamart-0.5.2/datamart/man/resfunc.Rd |only
datamart-0.5.2/datamart/man/show-methods.Rd | 29 ++
datamart-0.5.2/datamart/man/sourceforge.Rd | 19 -
datamart-0.5.2/datamart/man/strcap.Rd | 9
datamart-0.5.2/datamart/man/strdecrypt.Rd | 10
datamart-0.5.2/datamart/man/strdehtml.Rd |only
datamart-0.5.2/datamart/man/strencrypt.Rd | 11
datamart-0.5.2/datamart/man/strhead.Rd | 13 -
datamart-0.5.2/datamart/man/strparse.Rd | 11
datamart-0.5.2/datamart/man/strrecode.Rd | 15 -
datamart-0.5.2/datamart/man/strsubst.Rd | 26 +-
datamart-0.5.2/datamart/man/strtail.Rd | 13 -
datamart-0.5.2/datamart/man/uconv.Rd | 55 ++--
datamart-0.5.2/datamart/man/uconvlist.Rd | 10
datamart-0.5.2/datamart/man/urldata.Rd |only
datamart-0.5.2/datamart/man/xsparql.Rd |only
datamart-0.5.2/datamart/tests/test_mashup_deps.R |only
datamart-0.5.2/datamart/tests/test_mashup_deps.Rout |only
datamart-0.5.2/datamart/tests/test_uconv.R | 35 ++
datamart-0.5.2/datamart/tests/test_uconv.Rout | 5
137 files changed, 1329 insertions(+), 787 deletions(-)
Title: Circular Visualization in R
Diff between circlize versions 0.1.1 dated 2014-09-01 and 0.1.2 dated 2014-10-13
Description: circlize implements circular visualization
(http://circos.ca/) in R. Due to the natural born feature of R to draw statistical
graphics, this package can provide a more general and flexible way to
visualize huge information in a circular style.
Author: Zuguang Gu
Maintainer: Zuguang Gu
DESCRIPTION | 11 -
MD5 | 67 ++++----
NAMESPACE | 3
NEWS | 7
R/chordDiagram.R | 6
R/global.R | 163 +++++++++++--------
R/plot.R | 6
inst/CITATION |only
inst/doc/circlize.R | 4
inst/doc/circlize.Rnw | 8
inst/doc/circlize.pdf |binary
inst/doc/circular_phylogenetic_tree.pdf |binary
inst/doc/circular_view_of_tables.R | 2
inst/doc/circular_view_of_tables.Rnw | 2
inst/doc/circular_view_of_tables.pdf |binary
inst/doc/draw_ideogram.pdf |binary
inst/doc/genomic_plot.R | 183 ++++++++++++++++++++--
inst/doc/genomic_plot.Rnw | 155 ++++++++++++++++++
inst/doc/genomic_plot.pdf |binary
inst/doc/interesting_graphics.R | 4
inst/doc/interesting_graphics.Rnw | 2
inst/doc/interesting_graphics.pdf |binary
man/chordDiagram.rd | 4
man/circos.par.rd | 6
man/circos.trackHist.rd | 2
man/circos.trackPlotRegion.rd | 2
vignettes/circlize.Rnw | 8
vignettes/circular_view_of_tables.Rnw | 2
vignettes/genomic_plot.Rnw | 155 ++++++++++++++++++
vignettes/interesting_graphics.Rnw | 2
vignettes/src/genomic-04-genomicTrackPlotRegion.R | 8
vignettes/src/genomic-05-genomicLink.R | 2
vignettes/src/genomic-06-highlight.chromosome.R | 2
vignettes/src/intro-01-glance.R | 12 -
vignettes/src/intro-21-diffradius.R | 2
35 files changed, 660 insertions(+), 170 deletions(-)
Title: Linkage map construction using the MSTmap algorithm
Diff between ASMap versions 0.3-1 dated 2014-09-30 and 0.3-2 dated 2014-10-13
Description: Functions for (A)ccurate and (S)peedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred R/qtl objects. This includes extremely fast linkage map clustering and optimal marker ordering using MSTmap (see Wu et al.,2008).
Author: Julian Taylor
Maintainer: Julian Taylor
DESCRIPTION | 10 -
MD5 | 17 +--
NAMESPACE | 1
R/mstmap9.R | 55 +++++++++-
man/mergeCross.Rd | 2
man/pullCross.Rd | 12 ++
man/pushCross.Rd | 2
man/subsetCross.Rd |only
src/MSTOpt.cpp | 269 +++++++++++++++++++++++++------------------------
src/linkage_group_DH.h | 49 ++++----
10 files changed, 245 insertions(+), 172 deletions(-)