Title: NbClust package for determining the best number of clusters
Diff between NbClust versions 2.0.2 dated 2014-09-06 and 2.0.3 dated 2014-10-15
Description: NbClust package provides 30 indices for determining the optimal number of clusters in a dataset.
Author: Malika Charrad
Maintainer: Malika Charrad
DESCRIPTION | 8 +++---
MD5 | 5 ++-
inst |only
man/NbClust.Rd | 74 +++++++++++++++++++++++++++++----------------------------
4 files changed, 45 insertions(+), 42 deletions(-)
Title: Forecast verification routines for the SPECS FP7 project
Diff between SpecsVerification versions 0.2-0 dated 2014-09-12 and 0.3-0 dated 2014-10-15
More information about SpecsVerification at CRAN
Description: A collection of new forecast verification routines for the SPECS FP7 project. The emphasis is on comparative verification of ensemble forecasts.
Author: Stefan Siegert [aut, cre]
Maintainer: Stefan Siegert
DESCRIPTION | 8 ++++----
MD5 | 32 ++++++++++++++++++++++++++------
NAMESPACE | 11 +++++++++++
R/Detrend.R |only
R/EnsBrier.R |only
R/EnsBrierDiff.R |only
R/EnsBrierSs.R |only
R/EnsCrps.R |only
R/EnsCrpsDiff.R |only
R/EnsCrpss.R |only
R/EnsRps.R |only
R/EnsRpsDiff.R |only
R/EnsRpss.R |only
R/GenerateToyData.R |only
R/Rankhist.R | 39 ++++++++-------------------------------
man/BrierScoreDecomposition.Rd | 3 ++-
man/Detrend.Rd |only
man/EnsBrier.Rd |only
man/EnsCrps.Rd |only
man/EnsRps.Rd |only
man/EnsRpsDiff.Rd |only
man/EnsRpss.Rd |only
man/EnsScoreDiff.Rd |only
man/EnsSkillScore.Rd |only
man/FairSkillScore.Rd | 2 +-
man/GenerateToyData.Rd |only
man/Rankhist.Rd | 5 +++--
27 files changed, 55 insertions(+), 45 deletions(-)
Permanent link
Title: PubMed Word Clouds
Diff between PubMedWordcloud versions 0.3.1 dated 2014-06-23 and 0.3.2 dated 2014-10-15
More information about PubMedWordcloud at CRAN
Description: create a word cloud using the abstract of publications from PubMed
Author: Felix Yanhui Fan
Maintainer: Felix Yanhui Fan
PubMedWordcloud-0.3.1/PubMedWordcloud/R/pmWordCloud.R |only
PubMedWordcloud-0.3.1/PubMedWordcloud/man/pmWordCloud.Rd |only
PubMedWordcloud-0.3.2/PubMedWordcloud/DESCRIPTION | 10 ++--
PubMedWordcloud-0.3.2/PubMedWordcloud/MD5 | 22 ++++------
PubMedWordcloud-0.3.2/PubMedWordcloud/NAMESPACE | 2
PubMedWordcloud-0.3.2/PubMedWordcloud/R/plotWordCloud.R | 3 -
PubMedWordcloud-0.3.2/PubMedWordcloud/man/cleanAbstracts.Rd | 2
PubMedWordcloud-0.3.2/PubMedWordcloud/man/colSets.Rd | 2
PubMedWordcloud-0.3.2/PubMedWordcloud/man/editPMIDs.Rd | 2
PubMedWordcloud-0.3.2/PubMedWordcloud/man/getAbstracts.Rd | 2
PubMedWordcloud-0.3.2/PubMedWordcloud/man/getPMIDs.Rd | 2
PubMedWordcloud-0.3.2/PubMedWordcloud/man/getPMIDsByKeyWords.Rd | 2
PubMedWordcloud-0.3.2/PubMedWordcloud/man/plotWordCloud.Rd | 7 ---
13 files changed, 24 insertions(+), 32 deletions(-)
Permanent link
Title: Methods that apply to rows and columns of a matrix
Diff between matrixStats versions 0.10.0 dated 2014-06-08 and 0.10.3 dated 2014-10-15
Description: This packages provides methods operating on rows and columns of matrices, e.g. col/rowMedians() and col/rowRanks(). There are also some vector-based methods, e.g. anyMissing(), weightedMedians(), and binMeans(). The objective is to have all methods being optimized for speed and memory usage.
Author: Henrik Bengtsson [aut, cre, cph], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Peter Langfelder [ctb]
Maintainer: Henrik Bengtsson
matrixStats-0.10.0/matrixStats/inst/benchmarking/colAnyMissing.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colCounts.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colLogSumExps.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colMads.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colMedians.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colMins.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colOrderStats.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colProds.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colQuantiles.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colRanges.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colRanks.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colSds.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colTabulates.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colWeightedMeans.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/colWeightedMedians.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowAnyMissing.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowCounts.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowLogSumExps.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowMads.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowMedians.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowMins.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowOrderStats.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowProds.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowQuantiles.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowRanges.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowRanks.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowSds.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowTabulates.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowWeightedMeans.md.rsp |only
matrixStats-0.10.0/matrixStats/inst/benchmarking/rowWeightedMedians.md.rsp |only
matrixStats-0.10.3/matrixStats/DESCRIPTION | 10 -
matrixStats-0.10.3/matrixStats/MD5 | 80 ++++------
matrixStats-0.10.3/matrixStats/NEWS | 16 ++
matrixStats-0.10.3/matrixStats/R/binMeans.R | 6
matrixStats-0.10.3/matrixStats/inst/benchmarking/binCounts.md.rsp | 2
matrixStats-0.10.3/matrixStats/inst/benchmarking/binMeans.md.rsp | 2
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowAnyMissings.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowCounts.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowLogSumExps.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowMads.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowMeans.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowMedians.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowMins.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowOrderStats.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowProds.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowQuantiles.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowRanges.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowRanks.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowSds.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowSums.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowTabulates.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowWeightedMeans.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/colRowWeightedMedians.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/includes/appendix.md.rsp | 1
matrixStats-0.10.3/matrixStats/inst/benchmarking/includes/footer.md.rsp | 16 --
matrixStats-0.10.3/matrixStats/inst/benchmarking/includes/results.md.rsp |only
matrixStats-0.10.3/matrixStats/inst/benchmarking/includes/setup.md.rsp | 37 ++--
matrixStats-0.10.3/matrixStats/inst/benchmarking/index.md.rsp | 54 +-----
matrixStats-0.10.3/matrixStats/inst/benchmarking/product.md.rsp | 2
matrixStats-0.10.3/matrixStats/inst/benchmarking/weightedMedian.md.rsp | 1
matrixStats-0.10.3/matrixStats/man/binMeans.Rd | 6
matrixStats-0.10.3/matrixStats/man/matrixStats-package.Rd | 2
matrixStats-0.10.3/matrixStats/src/binMeans-BINBY-template.h | 28 +--
matrixStats-0.10.3/matrixStats/src/templates-types.h | 7
matrixStats-0.10.3/matrixStats/tests/binMeans,binCounts.R | 20 ++
65 files changed, 149 insertions(+), 141 deletions(-)
More information about ggRandomForests at CRAN
Permanent link
Title: Process Control And Internal Validation Of Forensic STR Kits
Diff between strvalidator versions 1.3.0 dated 2014-08-11 and 1.3.1 dated 2014-10-15
Description: strvalidator is an open source platform for validation and process
control. It provide tools to analyse data from internal validation of
forensic short tandem repeat (STR) kits. The tools are developed to provide
the necessary data to conform with the ENFSI guidelines for internal
validation. More information about each function can be found in the
respective help documentation.
Author: Oskar Hansson
Maintainer: Oskar Hansson
strvalidator-1.3.0/strvalidator/R/calculateH.r |only
strvalidator-1.3.0/strvalidator/R/calculateH_gui.r |only
strvalidator-1.3.0/strvalidator/man/calculateH.Rd |only
strvalidator-1.3.0/strvalidator/man/calculateH_gui.Rd |only
strvalidator-1.3.0/strvalidator/tests/testthat/test-calculateH.r |only
strvalidator-1.3.1/strvalidator/DESCRIPTION | 32 -
strvalidator-1.3.1/strvalidator/MD5 | 291 ++++-----
strvalidator-1.3.1/strvalidator/NAMESPACE | 95 ++-
strvalidator-1.3.1/strvalidator/NEWS | 36 +
strvalidator-1.3.1/strvalidator/R/addColor.r | 2
strvalidator-1.3.1/strvalidator/R/addData.r | 2
strvalidator-1.3.1/strvalidator/R/addData_gui.r | 17
strvalidator-1.3.1/strvalidator/R/addDye_gui.r | 19
strvalidator-1.3.1/strvalidator/R/addMarker.r | 6
strvalidator-1.3.1/strvalidator/R/addMarker_gui.r | 21
strvalidator-1.3.1/strvalidator/R/addSize.r | 22
strvalidator-1.3.1/strvalidator/R/addSize_gui.r | 17
strvalidator-1.3.1/strvalidator/R/calculateBalance.r | 39 -
strvalidator-1.3.1/strvalidator/R/calculateBalance_gui.r | 36 -
strvalidator-1.3.1/strvalidator/R/calculateCapillary.r | 2
strvalidator-1.3.1/strvalidator/R/calculateCapillary_gui.r | 17
strvalidator-1.3.1/strvalidator/R/calculateConcordance.r | 2
strvalidator-1.3.1/strvalidator/R/calculateConcordance_gui.r | 17
strvalidator-1.3.1/strvalidator/R/calculateDropout.r | 2
strvalidator-1.3.1/strvalidator/R/calculateDropout_gui.r | 21
strvalidator-1.3.1/strvalidator/R/calculateHeight.r |only
strvalidator-1.3.1/strvalidator/R/calculateHeight_gui.r |only
strvalidator-1.3.1/strvalidator/R/calculateHeterozygous.r | 2
strvalidator-1.3.1/strvalidator/R/calculateHeterozygous_gui.r | 21
strvalidator-1.3.1/strvalidator/R/calculateMixture.r | 15
strvalidator-1.3.1/strvalidator/R/calculateMixture_gui.r | 30
strvalidator-1.3.1/strvalidator/R/calculateOL.r | 2
strvalidator-1.3.1/strvalidator/R/calculateOL_gui.r | 17
strvalidator-1.3.1/strvalidator/R/calculateOverlap.r | 6
strvalidator-1.3.1/strvalidator/R/calculateOverlap_gui.r | 17
strvalidator-1.3.1/strvalidator/R/calculatePeaks.r | 2
strvalidator-1.3.1/strvalidator/R/calculatePeaks_gui.r | 21
strvalidator-1.3.1/strvalidator/R/calculateResultType.r | 5
strvalidator-1.3.1/strvalidator/R/calculateResultType_gui.r | 23
strvalidator-1.3.1/strvalidator/R/calculateStutter.r | 4
strvalidator-1.3.1/strvalidator/R/calculateStutter_gui.r | 21
strvalidator-1.3.1/strvalidator/R/checkDataset.r | 4
strvalidator-1.3.1/strvalidator/R/checkSubset.r | 6
strvalidator-1.3.1/strvalidator/R/checkSubset_gui.r | 21
strvalidator-1.3.1/strvalidator/R/colNames.r | 2
strvalidator-1.3.1/strvalidator/R/combineBinsAndPanels.r | 2
strvalidator-1.3.1/strvalidator/R/combine_gui.r | 22
strvalidator-1.3.1/strvalidator/R/cropData_gui.r | 22
strvalidator-1.3.1/strvalidator/R/detectKit.r | 2
strvalidator-1.3.1/strvalidator/R/editData_gui.r | 25
strvalidator-1.3.1/strvalidator/R/export.r | 4
strvalidator-1.3.1/strvalidator/R/export_gui.r | 32 -
strvalidator-1.3.1/strvalidator/R/filterProfile.r | 6
strvalidator-1.3.1/strvalidator/R/filterProfile_gui.r | 23
strvalidator-1.3.1/strvalidator/R/getDb.r | 23
strvalidator-1.3.1/strvalidator/R/getKit.r | 302 +++++-----
strvalidator-1.3.1/strvalidator/R/ggsave_gui.r | 143 ++++
strvalidator-1.3.1/strvalidator/R/globals.R | 18
strvalidator-1.3.1/strvalidator/R/guessProfile.r | 5
strvalidator-1.3.1/strvalidator/R/guessProfile_gui.r | 19
strvalidator-1.3.1/strvalidator/R/hooks.r |only
strvalidator-1.3.1/strvalidator/R/import.r | 6
strvalidator-1.3.1/strvalidator/R/import_gui.r | 21
strvalidator-1.3.1/strvalidator/R/listObjects.r | 7
strvalidator-1.3.1/strvalidator/R/loadPackage.r | 4
strvalidator-1.3.1/strvalidator/R/makeKit_gui.r | 22
strvalidator-1.3.1/strvalidator/R/modelDropout_gui.r | 42 -
strvalidator-1.3.1/strvalidator/R/plotBalance_gui.r | 50 -
strvalidator-1.3.1/strvalidator/R/plotCapillary_gui.r | 24
strvalidator-1.3.1/strvalidator/R/plotDistribution_gui.r | 22
strvalidator-1.3.1/strvalidator/R/plotDropout_gui.r | 29
strvalidator-1.3.1/strvalidator/R/plotKit_gui.r | 22
strvalidator-1.3.1/strvalidator/R/plotPeaks_gui.r | 26
strvalidator-1.3.1/strvalidator/R/plotPrecision_gui.r | 37 -
strvalidator-1.3.1/strvalidator/R/plotResultType_gui.r | 26
strvalidator-1.3.1/strvalidator/R/plotStutter_gui.r | 43 -
strvalidator-1.3.1/strvalidator/R/readBinsFile.r | 6
strvalidator-1.3.1/strvalidator/R/readPanelsFile.r | 6
strvalidator-1.3.1/strvalidator/R/saveObject.r | 4
strvalidator-1.3.1/strvalidator/R/slim.r | 4
strvalidator-1.3.1/strvalidator/R/slim_gui.r | 48 +
strvalidator-1.3.1/strvalidator/R/sortMarker.r | 4
strvalidator-1.3.1/strvalidator/R/strvalidator-package.r | 22
strvalidator-1.3.1/strvalidator/R/strvalidator.r | 180 +++--
strvalidator-1.3.1/strvalidator/R/tableBalance.r | 4
strvalidator-1.3.1/strvalidator/R/tableBalance_gui.r | 19
strvalidator-1.3.1/strvalidator/R/tableCapillary.r | 4
strvalidator-1.3.1/strvalidator/R/tableCapillary_gui.r | 19
strvalidator-1.3.1/strvalidator/R/tablePrecision.r | 4
strvalidator-1.3.1/strvalidator/R/tablePrecision_gui.r | 19
strvalidator-1.3.1/strvalidator/R/tableStutter.r | 4
strvalidator-1.3.1/strvalidator/R/tableStutter_gui.r | 20
strvalidator-1.3.1/strvalidator/R/trim.r | 4
strvalidator-1.3.1/strvalidator/R/trim_gui.r | 22
strvalidator-1.3.1/strvalidator/README.md | 16
strvalidator-1.3.1/strvalidator/man/addData_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/addDye_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/addMarker_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/addSize.Rd | 5
strvalidator-1.3.1/strvalidator/man/addSize_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculateBalance.Rd | 4
strvalidator-1.3.1/strvalidator/man/calculateBalance_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculateCapillary_gui.Rd | 4
strvalidator-1.3.1/strvalidator/man/calculateConcordance_gui.Rd | 4
strvalidator-1.3.1/strvalidator/man/calculateDropout_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculateHeight.Rd |only
strvalidator-1.3.1/strvalidator/man/calculateHeight_gui.Rd |only
strvalidator-1.3.1/strvalidator/man/calculateHeterozygous_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculateMixture.Rd | 1
strvalidator-1.3.1/strvalidator/man/calculateMixture_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculateOL_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculateOverlap_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculatePeaks_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/calculateResultType_gui.Rd | 4
strvalidator-1.3.1/strvalidator/man/calculateStutter_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/checkDataset.Rd | 2
strvalidator-1.3.1/strvalidator/man/checkSubset_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/combine_gui.Rd | 4
strvalidator-1.3.1/strvalidator/man/cropData_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/editData_gui.Rd | 4
strvalidator-1.3.1/strvalidator/man/export.Rd | 2
strvalidator-1.3.1/strvalidator/man/export_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/filterProfile_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/getDb.Rd | 7
strvalidator-1.3.1/strvalidator/man/ggsave_gui.Rd | 9
strvalidator-1.3.1/strvalidator/man/guessProfile_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/import_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/listObjects.Rd | 4
strvalidator-1.3.1/strvalidator/man/makeKit_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/modelDropout_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotBalance_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotCapillary_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotDistribution_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotDropout_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotKit_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotPeaks_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotPrecision_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotResultType_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/plotStutter_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/readBinsFile.Rd | 1
strvalidator-1.3.1/strvalidator/man/readPanelsFile.Rd | 1
strvalidator-1.3.1/strvalidator/man/saveObject.Rd | 1
strvalidator-1.3.1/strvalidator/man/slim_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/tableBalance_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/tableCapillary_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/tablePrecision_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/tableStutter_gui.Rd | 5
strvalidator-1.3.1/strvalidator/man/trim_gui.Rd | 5
strvalidator-1.3.1/strvalidator/tests/testthat.R | 2
strvalidator-1.3.1/strvalidator/tests/testthat/test-addSize.r | 102 +++
strvalidator-1.3.1/strvalidator/tests/testthat/test-calculateHeight.r |only
strvalidator-1.3.1/strvalidator/tests/testthat/test-calculateMixture.r | 4
152 files changed, 1835 insertions(+), 858 deletions(-)
Title: Multivariate Normality Tests
Diff between MVN versions 3.4 dated 2014-04-26 and 3.5 dated 2014-10-15
Description: Assessing the assumption of multivariate normality is required by many parametric multivariate statistical methods, such as discriminant analysis, principal component analysis, MANOVA, etc. Here, we present an R package to asses multivariate normality. The MVN package contains three widely used multivariate normality tests, including Mardia's, Henze-Zirkler's, Royston's, graphical approaches, including chi-square Q-Q plot, perspective plot and contour plot and two outlier detection methods based on Mahalanobis distance. We have also developed web-tool version of the package which is available at http://www.biosoft.hacettepe.edu.tr/MVN/.
Author: Selcuk Korkmaz [aut, cre], Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz
DESCRIPTION | 22 +++++++++++-------
MD5 | 24 ++++++++++----------
NAMESPACE | 4 +++
R/classes.R | 2 +
R/hzTest.R | 4 +--
R/mardiaTest.R | 4 +--
R/mvOutlier.R |only
R/roystonTest.R | 2 -
build/vignette.rds |binary
inst/doc/MVN.R | 35 +++++++++++++++--------------
inst/doc/MVN.Rnw | 63 ++++++++++++++++++++++++++++++++++++++++++++++++++++-
inst/doc/MVN.pdf |binary
man/mvOutlier.Rd |only
vignettes/MVN.Rnw | 63 ++++++++++++++++++++++++++++++++++++++++++++++++++++-
14 files changed, 180 insertions(+), 43 deletions(-)
Title: Colored Terminal Output
Diff between crayon versions 1.0.0 dated 2014-09-23 and 1.1.0 dated 2014-10-15
Description: Crayon adds support for colored terminal output on
terminals that support ANSI color and highlight codes.
ANSI color support is automatically detected.
Colors and highlighting can be combined and nested. New styles
can also be created easily. This package was inspired by the chalk
JavaScript project.
Author: "Gabor Csardi" [aut, cre]
Maintainer: "Gabor Csardi"
DESCRIPTION | 12 +-
MD5 | 49 +++++---
NAMESPACE | 7 +
R/ansi-256.r |only
R/combine.r |only
R/disposable.r |only
R/has_color.r | 41 ++++++-
R/machinery.r | 220 +++++++++++++++++++++++++++++++++++----
R/print.r | 10 +
R/show.r |only
R/style-var.r | 33 ++++-
R/styles.r | 48 +++++---
R/utils.r | 31 +++++
README.md | 22 +++
man/chr.Rd | 2
man/combine_styles.Rd |only
man/concat.Rd | 2
man/crayon.Rd | 14 +-
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man/style.Rd | 9 +
man/styles.Rd | 20 +--
tests/testthat/test-has-color.r | 18 ++-
tests/testthat/test-make-style.r |only
tests/testthat/test-style-var.r | 3
tests/testthat/test-styles.r |only
31 files changed, 443 insertions(+), 111 deletions(-)
Title: Genetic Algorithms
Diff between GA versions 2.1 dated 2014-05-06 and 2.2 dated 2014-10-15
Description: An R package for optimization using genetic algorithms. The package provides a flexible general-purpose set of tools for implementing genetic algorithms search in both the continuous and discrete case, whether constrained or not. Users can easily define their own objective function depending on the problem at hand. Several genetic operators are available and can be combined to explore the best settings for the current task. Furthermore, users can define new genetic operators and easily evaluate their performances. GAs can be run sequentially or in parallel.
Author: Luca Scrucca
Maintainer: Luca Scrucca
GA-2.1/GA/R/gaParallel.R |only
GA-2.1/GA/build |only
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GA-2.2/GA/DESCRIPTION | 12 ++---
GA-2.2/GA/MD5 | 26 ++++------
GA-2.2/GA/NAMESPACE | 6 +-
GA-2.2/GA/R/ga.R | 90 +++++++++-----------------------------
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GA-2.2/GA/man/GA-package.Rd | 9 ++-
GA-2.2/GA/man/ga.Rd | 17 +++++--
GA-2.2/GA/man/ga_pmutation.Rd | 2
19 files changed, 77 insertions(+), 105 deletions(-)
Title: Evolutionary Learning of Globally Optimal Trees
Diff between evtree versions 0.1-5 dated 2014-07-01 and 1.0-0 dated 2014-10-15
Description: Commonly used classification and regression tree methods like the CART algorithm
are recursive partitioning methods that build the model in a forward stepwise search.
Although this approach is known to be an efficient heuristic, the results of recursive
tree methods are only locally optimal, as splits are chosen to maximize homogeneity at
the next step only. An alternative way to search over the parameter space of trees is
to use global optimization methods like evolutionary algorithms. The evtree package
implements an evolutionary algorithm for learning globally optimal classification and
regression trees in R. CPU and memory-intensive tasks are fully computed in C++ while
the partykit package is leveraged to represent the resulting trees in R, providing
unified infrastructure for summaries, visualizations, and predictions.
Author: Thomas Grubinger [aut, cre],
Achim Zeileis [aut],
Karl-Peter Pfeiffer [aut]
Maintainer: Thomas Grubinger
DESCRIPTION | 12
MD5 | 35 -
NEWS | 9
R/evtree.R | 12
build/vignette.rds |binary
inst/CITATION | 36 -
inst/doc/evtree.R | 1098 ++++++++++++++++++-------------------
inst/doc/evtree.Rnw | 68 +-
inst/doc/evtree.pdf |binary
man/BBBClub.Rd | 3
man/evtree.Rd | 12
src/container.cpp | 147 ++--
src/container.h | 2
src/tree.cpp | 42 -
src/tree.h | 58 +
tests/Examples/evtree-Ex.Rout.save | 125 +---
vignettes/evtree.Rnw | 68 +-
vignettes/evtree.Rout.save |only
vignettes/evtree.bib | 64 +-
19 files changed, 892 insertions(+), 899 deletions(-)
Title: R interface to the USGS BISON API
Diff between rbison versions 0.3.2 dated 2014-02-18 and 0.4.3 dated 2014-10-15
Description: This package is an R interface to the USGS BISON API, a database
for species occurrence data on the web. Data comes from species in the
United States, from participating data providers. This package focuses on
getting the data from BISON - but does provide a function to help visualize
data quickly.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain
rbison-0.3.2/rbison/R/bison.r |only
rbison-0.3.2/rbison/R/bison_providers.r |only
rbison-0.3.2/rbison/R/bison_solr.r |only
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rbison-0.4.3/rbison/DESCRIPTION | 12
rbison-0.4.3/rbison/LICENSE |only
rbison-0.4.3/rbison/MD5 | 91 ++-
rbison-0.4.3/rbison/NAMESPACE | 11
rbison-0.4.3/rbison/NEWS | 48 +-
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rbison-0.4.3/rbison/README.md | 433 ++++++++-----------
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rbison-0.4.3/rbison/inst/doc/rbison_vignette.Rmd | 372 +++++++---------
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rbison-0.4.3/rbison/man/bison.Rd | 146 ++++--
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rbison-0.4.3/rbison/man/fips.Rd | 1
rbison-0.4.3/rbison/man/is.bison.Rd | 3
rbison-0.4.3/rbison/man/is.bison_solr.Rd | 3
rbison-0.4.3/rbison/man/rbison-package.Rd | 21
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rbison-0.4.3/rbison/tests/testthat/test-bison.R | 2
rbison-0.4.3/rbison/tests/testthat/test-bison_solr.R | 13
rbison-0.4.3/rbison/tests/testthat/test-bisonmap.R | 10
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rbison-0.4.3/rbison/vignettes/rbison_vignette.Rmd | 372 +++++++---------
58 files changed, 930 insertions(+), 892 deletions(-)
Title: Variable Selection for Model-Based Clustering
Diff between clustvarsel versions 2.0 dated 2013-10-25 and 2.1 dated 2014-10-15
Description: A function which implements variable selection methodology for model-based clustering which allows to find the (locally) optimal subset of variables in a data set that have group/cluster information. A greedy or headlong search can be used, either in a forward-backward or backward-forward direction, with or without sub-sampling at the hierarchical clustering stage for starting MCLUST models. By default the algorithm uses a sequential search, but parallelization is also available.
Author: Nema Dean, Adrian E. Raftery, and Luca Scrucca
Maintainer: Luca Scrucca
clustvarsel-2.0/clustvarsel/inst/doc |only
clustvarsel-2.0/clustvarsel/vignettes |only
clustvarsel-2.1/clustvarsel/DESCRIPTION | 12 ++--
clustvarsel-2.1/clustvarsel/MD5 | 29 +++++------
clustvarsel-2.1/clustvarsel/NAMESPACE | 10 +++-
clustvarsel-2.1/clustvarsel/R/clustvarsel.R | 21 +++++---
clustvarsel-2.1/clustvarsel/R/clvarselgrbkw.R | 32 ++++++++----
clustvarsel-2.1/clustvarsel/R/clvarselgrfwd.R | 31 ++++++++----
clustvarsel-2.1/clustvarsel/R/clvarselhlbkw.R | 2
clustvarsel-2.1/clustvarsel/R/clvarselhlfwd.R | 12 ++--
clustvarsel-2.1/clustvarsel/R/startParallel.R | 40 ++++++++--------
clustvarsel-2.1/clustvarsel/R/zzz.R |only
clustvarsel-2.1/clustvarsel/inst/CITATION | 10 ++--
clustvarsel-2.1/clustvarsel/inst/NEWS | 36 ++++++++------
clustvarsel-2.1/clustvarsel/man/clustvarsel-internal.Rd | 4 -
clustvarsel-2.1/clustvarsel/man/clustvarsel.Rd | 13 ++---
16 files changed, 147 insertions(+), 105 deletions(-)
Title: R Wrapper to the Almetrics API Platform Developed by PLOS
Diff between alm versions 0.1.9 dated 2014-06-18 and 0.3.0 dated 2014-10-15
Description: An R interface to the open source article level metrics API
created by the Public Library of Science (PLOS). A number of publishers are
using the open source app created by PLOS, so you can drop in a different
base URL to the functions in this package to get to not only PLOS data, but
data for Crossref, and more as the open source PLOS software is used.
rCharts is in Enhances; and can be used for creating interactive charts
(e.g., in the function plot_signposts in this package); obtain rCharts at
https://github.com/ramnathv/rCharts.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut],
Fenner Martin [aut]
Maintainer: Scott Chamberlain
alm-0.1.9/alm/R/alm.R |only
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alm-0.3.0/alm/DESCRIPTION | 22
alm-0.3.0/alm/LICENSE |only
alm-0.3.0/alm/MD5 | 153 +---
alm-0.3.0/alm/NAMESPACE | 30
alm-0.3.0/alm/NEWS | 31
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alm-0.3.0/alm/R/plot_signposts.R | 65 -
alm-0.3.0/alm/R/zzz.R | 64 +
alm-0.3.0/alm/README.md | 743 ++++++++++++--------
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alm-0.3.0/alm/man/plot_signposts.Rd | 21
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alm-0.3.0/alm/vignettes/alm_vignette.html | 100 +-
81 files changed, 777 insertions(+), 591 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Diff between mirtCAT versions 0.1 dated 2014-08-14 and 0.2 dated 2014-10-15
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package. Suitable for applying unidimensional and multidimensional
computerized adaptive tests using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Author: Phil Chalmers [aut, cre, cph]
Maintainer: Phil Chalmers
mirtCAT-0.1/mirtCAT/tests/tests/test-mirtCAT_one.R |only
mirtCAT-0.1/mirtCAT/tests/tests/test-mirtCAT_two.R |only
mirtCAT-0.2/mirtCAT/DESCRIPTION | 11
mirtCAT-0.2/mirtCAT/MD5 | 54 ++-
mirtCAT-0.2/mirtCAT/NAMESPACE | 6
mirtCAT-0.2/mirtCAT/NEWS |only
mirtCAT-0.2/mirtCAT/R/DesignClass.R | 45 ++-
mirtCAT-0.2/mirtCAT/R/FI.R |only
mirtCAT-0.2/mirtCAT/R/PersonClass.R | 29 +
mirtCAT-0.2/mirtCAT/R/ShinyGUIClass.R | 16 -
mirtCAT-0.2/mirtCAT/R/TestClass.R | 24 +
mirtCAT-0.2/mirtCAT/R/findNextCATItem.R | 138 +++++++--
mirtCAT-0.2/mirtCAT/R/generate_pattern.R | 6
mirtCAT-0.2/mirtCAT/R/mirtCAT-package.R | 2
mirtCAT-0.2/mirtCAT/R/mirtCAT.R | 248 +++++++++++------
mirtCAT-0.2/mirtCAT/R/run_pattern.R | 12
mirtCAT-0.2/mirtCAT/R/selection_criteria.R | 92 ++++--
mirtCAT-0.2/mirtCAT/R/server.R | 66 ++--
mirtCAT-0.2/mirtCAT/R/ui.R | 12
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mirtCAT-0.2/mirtCAT/R/util.R | 15 -
mirtCAT-0.2/mirtCAT/R/zzz-methods.R | 9
mirtCAT-0.2/mirtCAT/README.md | 9
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mirtCAT-0.2/mirtCAT/man/generate_pattern.Rd | 6
mirtCAT-0.2/mirtCAT/man/mirtCAT-package.Rd | 2
mirtCAT-0.2/mirtCAT/man/mirtCAT.Rd | 212 +++++++++-----
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34 files changed, 737 insertions(+), 277 deletions(-)