Title: Generate Physical Random Numbers on Intel CPUs with the RdRand
instruction
Diff between Rrdrand versions 0.1-9 dated 2014-06-27 and 0.1-10 dated 2014-10-16
Description: Make use of the physical random number accessed by the RdRand
instruction in recent Intel CPUs (Ivy Bridge and later).
Author: Eiji NAKAMA
Maintainer: Eiji NAKAMA
Changelog | 1 +
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/zzz.R | 8 +++-----
4 files changed, 11 insertions(+), 12 deletions(-)
Title: Read and Analyze PLEXOS Solutions from R
Diff between rplexos versions 0.9.1 dated 2014-09-11 and 0.10 dated 2014-10-16
Description: This package contains functions to efficiently convert PLEXOS
solutions into SQLite databases and to extract information from those
databases to perform analysis. It supports collation of solutions that may
have divided into different time partitions, as well as the comparison
across different scenarios.
Author: Eduardo Ibanez [aut, cre],
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez
rplexos-0.10/rplexos/DESCRIPTION | 32 -
rplexos-0.10/rplexos/LICENSE | 2
rplexos-0.10/rplexos/MD5 | 30 -
rplexos-0.10/rplexos/NAMESPACE | 13
rplexos-0.10/rplexos/R/RcppExports.R | 4
rplexos-0.10/rplexos/R/auxiliary.R | 50 +
rplexos-0.10/rplexos/R/globalVariables.R | 12
rplexos-0.10/rplexos/R/help.R | 2
rplexos-0.10/rplexos/R/log_parser.R |only
rplexos-0.10/rplexos/R/plexos_open.R | 40 +
rplexos-0.10/rplexos/R/process_folder.R | 2
rplexos-0.10/rplexos/R/process_solution.R | 566 ++++++++++++---------
rplexos-0.10/rplexos/R/query.R | 285 ++++++----
rplexos-0.10/rplexos/man/is_sample_stats.Rd |only
rplexos-0.10/rplexos/man/query_log.Rd |only
rplexos-0.10/rplexos/man/query_master.Rd | 10
rplexos-0.10/rplexos/src/RcppExports.cpp | 16
rplexos-0.9.1/rplexos/src/expand_interval_data.cpp |only
18 files changed, 654 insertions(+), 410 deletions(-)
Title: raster: Geographic data analysis and modeling
Diff between raster versions 2.3-0 dated 2014-09-06 and 2.3-10 dated 2014-10-16
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported.
Author: Robert J. Hijmans [cre, aut],
Jacob van Etten [ctb],
Matteo Mattiuzzi [ctb],
Michael Sumner [ctb],
Jonathan A. Greenberg [ctb],
Oscar Perpinan Lamigueiro [ctb],
Andrew Bevan [ctb],
Etienne B. Racine [ctb],
Ashton Shortridge [ctb]
Maintainer: Robert J. Hijmans
raster-2.3-0/raster/man/join.Rd |only
raster-2.3-10/raster/ChangeLog | 12
raster-2.3-10/raster/DESCRIPTION | 14 -
raster-2.3-10/raster/MD5 | 285 +++++++++++------------
raster-2.3-10/raster/R/AAAClasses.R | 2
raster-2.3-10/raster/R/GDALtransient.R | 1
raster-2.3-10/raster/R/addLayer.R | 2
raster-2.3-10/raster/R/aggregate_sp.R | 23 +
raster-2.3-10/raster/R/alignExtent.R | 1
raster-2.3-10/raster/R/as.array.R | 2
raster-2.3-10/raster/R/as.logical.R | 2
raster-2.3-10/raster/R/as.raster.R | 2
raster-2.3-10/raster/R/bands.R | 2
raster-2.3-10/raster/R/bbox.R | 1
raster-2.3-10/raster/R/bind.R | 31 ++
raster-2.3-10/raster/R/boundaries.R | 2
raster-2.3-10/raster/R/boxplot.R | 2
raster-2.3-10/raster/R/buffer.R | 7
raster-2.3-10/raster/R/cellFromLine.R | 2
raster-2.3-10/raster/R/cellFromPolygon.R | 2
raster-2.3-10/raster/R/cellRowCol.R | 2
raster-2.3-10/raster/R/cellsFromExtent.R | 1
raster-2.3-10/raster/R/clearValues.R | 2
raster-2.3-10/raster/R/compare_Logical.R | 2
raster-2.3-10/raster/R/contour.R | 2
raster-2.3-10/raster/R/cover.R | 2
raster-2.3-10/raster/R/coverBrick.R | 2
raster-2.3-10/raster/R/coverPolygons.R | 2
raster-2.3-10/raster/R/cropSpatial.R | 2
raster-2.3-10/raster/R/cut.R | 2
raster-2.3-10/raster/R/dataProperties.R | 2
raster-2.3-10/raster/R/dataType.R | 2
raster-2.3-10/raster/R/direction.R | 2
raster-2.3-10/raster/R/distance.R | 2
raster-2.3-10/raster/R/distanceFromPoints.R | 2
raster-2.3-10/raster/R/distanceRows.R | 2
raster-2.3-10/raster/R/drawPoly.R | 1
raster-2.3-10/raster/R/drivers.R | 2
raster-2.3-10/raster/R/dropLayer.R | 2
raster-2.3-10/raster/R/erase.R | 13 -
raster-2.3-10/raster/R/extend.R | 53 ++--
raster-2.3-10/raster/R/extent.R | 37 ++
raster-2.3-10/raster/R/extentUnion.R | 1
raster-2.3-10/raster/R/flip.R | 2
raster-2.3-10/raster/R/focal.R | 6
raster-2.3-10/raster/R/freq.R | 8
raster-2.3-10/raster/R/fullFileName.R | 2
raster-2.3-10/raster/R/gdalFormats.R | 2
raster-2.3-10/raster/R/getData.R | 2
raster-2.3-10/raster/R/getValuesRows.R | 2
raster-2.3-10/raster/R/hdr.R | 2
raster-2.3-10/raster/R/hdrBIL.R | 2
raster-2.3-10/raster/R/hdrBov.R | 2
raster-2.3-10/raster/R/hdrEnvi.R | 2
raster-2.3-10/raster/R/hdrErdasRaw.R | 2
raster-2.3-10/raster/R/hdrIDRISI.R | 2
raster-2.3-10/raster/R/hdrPRJ.R | 2
raster-2.3-10/raster/R/hdrSAGA.R | 2
raster-2.3-10/raster/R/hdrVRT.R | 2
raster-2.3-10/raster/R/hdrWorldFile.R | 2
raster-2.3-10/raster/R/head.R | 2
raster-2.3-10/raster/R/index.R | 13 -
raster-2.3-10/raster/R/indexReplace.R | 2
raster-2.3-10/raster/R/inifile.R | 1
raster-2.3-10/raster/R/init.R | 41 ++-
raster-2.3-10/raster/R/intDataType.R | 2
raster-2.3-10/raster/R/intersect_sp.R | 6
raster-2.3-10/raster/R/is.na.R | 2
raster-2.3-10/raster/R/isLonLat.R | 2
raster-2.3-10/raster/R/localFun.R |only
raster-2.3-10/raster/R/makeProjString.R | 2
raster-2.3-10/raster/R/makeRasterList.R | 2
raster-2.3-10/raster/R/ncell.R | 2
raster-2.3-10/raster/R/netCDFtoStack.R | 2
raster-2.3-10/raster/R/netCDFutil.R | 35 ++
raster-2.3-10/raster/R/newPLot.R | 2
raster-2.3-10/raster/R/nlayers.R | 2
raster-2.3-10/raster/R/notused.R | 2
raster-2.3-10/raster/R/origin.R | 2
raster-2.3-10/raster/R/overlay.R | 2
raster-2.3-10/raster/R/persp.R | 2
raster-2.3-10/raster/R/plotRaster.R | 2
raster-2.3-10/raster/R/plotRaster2.R | 2
raster-2.3-10/raster/R/predict.R | 2
raster-2.3-10/raster/R/print.R | 15 -
raster-2.3-10/raster/R/progressBar.R | 2
raster-2.3-10/raster/R/properties.R | 2
raster-2.3-10/raster/R/rasterFromASCII.R | 2
raster-2.3-10/raster/R/rasterFromBIL.R | 2
raster-2.3-10/raster/R/rasterFromCells.R | 2
raster-2.3-10/raster/R/rasterFromSAGA.R | 2
raster-2.3-10/raster/R/rasterFromSurferFile.R | 2
raster-2.3-10/raster/R/rasterOptions.R | 2
raster-2.3-10/raster/R/rasterToPolygons.R | 2
raster-2.3-10/raster/R/rasterize.R | 2
raster-2.3-10/raster/R/rasterizeLines.R | 2
raster-2.3-10/raster/R/rasterizePolygons.R | 124 +++-------
raster-2.3-10/raster/R/rasterizePolygons3.R | 2
raster-2.3-10/raster/R/replaceProperties.R | 26 +-
raster-2.3-10/raster/R/resolution.R | 2
raster-2.3-10/raster/R/rotate.R | 8
raster-2.3-10/raster/R/roundExtent.R | 2
raster-2.3-10/raster/R/rowMinMax.R | 14 -
raster-2.3-10/raster/R/sampleInt.R | 2
raster-2.3-10/raster/R/sampleRandom.R | 6
raster-2.3-10/raster/R/sampleRegular.R | 129 +++++-----
raster-2.3-10/raster/R/setFileExt.R | 2
raster-2.3-10/raster/R/setValues.R | 2
raster-2.3-10/raster/R/shp.R | 10
raster-2.3-10/raster/R/stackApply.R | 2
raster-2.3-10/raster/R/stackFile.R | 2
raster-2.3-10/raster/R/stackSelect.R | 2
raster-2.3-10/raster/R/subs.R | 2
raster-2.3-10/raster/R/tmpFile.R | 11
raster-2.3-10/raster/R/transpose.R | 2
raster-2.3-10/raster/R/union_sp.R | 40 ---
raster-2.3-10/raster/R/unstack.R | 2
raster-2.3-10/raster/R/validCell.R | 2
raster-2.3-10/raster/R/values.R | 2
raster-2.3-10/raster/R/which.R | 2
raster-2.3-10/raster/R/which.max.R | 41 ++-
raster-2.3-10/raster/R/writeAllRaster.R | 2
raster-2.3-10/raster/R/writeStartStop.R | 2
raster-2.3-10/raster/R/writeStartStopAscii.R | 2
raster-2.3-10/raster/R/writeStartStopRaster.R | 2
raster-2.3-10/raster/R/xyMinMax.R | 2
raster-2.3-10/raster/R/xyResolution.R | 2
raster-2.3-10/raster/R/zoom.R | 2
raster-2.3-10/raster/inst/doc/Raster.pdf |binary
raster-2.3-10/raster/inst/doc/functions.pdf |binary
raster-2.3-10/raster/inst/doc/rasterfile.pdf |binary
raster-2.3-10/raster/inst/external/countries.csv | 10
raster-2.3-10/raster/man/animate.Rd | 2
raster-2.3-10/raster/man/bind.Rd |only
raster-2.3-10/raster/man/boundaries.Rd | 3
raster-2.3-10/raster/man/buffer.Rd | 17 -
raster-2.3-10/raster/man/corLocal.Rd | 2
raster-2.3-10/raster/man/extractIndex.Rd | 3
raster-2.3-10/raster/man/init.Rd | 23 -
raster-2.3-10/raster/man/localFun.Rd |only
raster-2.3-10/raster/man/pointdistance.Rd | 2
raster-2.3-10/raster/man/raster-package.Rd | 1
raster-2.3-10/raster/man/rasterize.Rd | 6
raster-2.3-10/raster/man/replacement.Rd | 1
raster-2.3-10/raster/man/sampleRegular.Rd | 8
raster-2.3-10/raster/src/minmax.c |only
146 files changed, 741 insertions(+), 538 deletions(-)
Title: Time Dependent Point Process Modelling
Diff between PtProcess versions 3.3-6 dated 2014-08-20 and 3.3-7 dated 2014-10-16
Description: This package fits and analyses time dependent marked point process models with an emphasis on earthquake modelling. For a more detailed introduction to the package, see the topic "PtProcess". A list of recent changes can be found in the topic "Change Log".
Author: David Harte
Maintainer: David Harte
DESCRIPTION | 10 +++++-----
MD5 | 14 ++++++++------
NAMESPACE | 4 +++-
R/logLik.mpp.R | 4 ++--
R/makeSOCKcluster.R |only
man/Changes.Rd | 6 ++++++
man/logLik.Rd | 11 +++++++----
man/makeSOCKcluster.Rd |only
man/neglogLik.Rd | 2 +-
9 files changed, 32 insertions(+), 19 deletions(-)
Title: Calculation of selection coefficients
Diff between gsg versions 1.0 dated 2012-12-21 and 2.0 dated 2014-10-16
Description: gsg (gam selection gradients) provides a unified approach to the regression analysis of selection from longitudinal data collected from natural populations.
Author: Michael Morrissey, Krzysztof Sakrejda
Maintainer: Michael Morrissey
DESCRIPTION | 15 ++++++------
MD5 | 30 +++++++++++++++++--------
NAMESPACE | 8 ++++--
R/finite.dif.R |only
R/fitness.landscape.R | 8 ++++--
R/fitness.landscape2.R |only
R/gam.gradients.R | 50 +++++++++++++++++++++++++++++++++++++------
R/gppr.R |only
R/gppr.gradients.R |only
R/predict.gppr.R |only
data/SoayLambs.RData |only
inst/doc/gsg_notes.pdf |binary
man/SoayLambs.Rd |only
man/fitness.landscape.Rd | 2 -
man/gam.gradients.Rd | 2 -
man/gppr.Rd |only
man/gppr.gradients.Rd |only
man/gsg-package.Rd | 4 ++-
man/humanNeonatal.Rd | 2 -
man/moments.differentials.Rd | 2 -
man/predict.gppr.Rd |only
21 files changed, 88 insertions(+), 35 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Diff between stochvol versions 0.8-4 dated 2014-07-01 and 0.9-0 dated 2014-10-16
Description: This package provides efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models via Markov chain Monte Carlo (MCMC) methods.
Author: Gregor Kastner [aut, cre]
Maintainer: Gregor Kastner
stochvol-0.8-4/stochvol/man/DOTsvsample.Rd |only
stochvol-0.8-4/stochvol/vignettes/extrafig/predlik2.pdf |only
stochvol-0.9-0/stochvol/DESCRIPTION | 12
stochvol-0.9-0/stochvol/MD5 | 48
stochvol-0.9-0/stochvol/NAMESPACE | 5
stochvol-0.9-0/stochvol/NEWS | 29
stochvol-0.9-0/stochvol/R/wrapper.R | 8
stochvol-0.9-0/stochvol/R/zzz.R |only
stochvol-0.9-0/stochvol/build/vignette.rds |binary
stochvol-0.9-0/stochvol/data/exrates.RData |binary
stochvol-0.9-0/stochvol/inst/doc/article.R | 312 +++-
stochvol-0.9-0/stochvol/inst/doc/article.Rnw | 625 ++++++----
stochvol-0.9-0/stochvol/inst/doc/article.pdf |binary
stochvol-0.9-0/stochvol/man/predict.svdraws.Rd | 2
stochvol-0.9-0/stochvol/man/stochvol-package.Rd | 4
stochvol-0.9-0/stochvol/man/svsample.Rd | 6
stochvol-0.9-0/stochvol/man/svsample2.Rd |only
stochvol-0.9-0/stochvol/man/svsim.Rd | 2
stochvol-0.9-0/stochvol/man/updatesummary.Rd | 6
stochvol-0.9-0/stochvol/src/sampler.cpp | 13
stochvol-0.9-0/stochvol/vignettes/article.Rnw | 625 ++++++----
stochvol-0.9-0/stochvol/vignettes/extrafig/predlik1.pdf |binary
stochvol-0.9-0/stochvol/vignettes/extrafig/predlik3.pdf |binary
stochvol-0.9-0/stochvol/vignettes/macros.tex | 6
stochvol-0.9-0/stochvol/vignettes/mybib.bib | 36
stochvol-0.9-0/stochvol/vignettes/vignette_sampling_draws2.RData |binary
stochvol-0.9-0/stochvol/vignettes/vignette_sampling_realworld.RData |binary
27 files changed, 1156 insertions(+), 583 deletions(-)
Title: Plots a QQ-Norm Plot with several Gaussian simulations.
Diff between StMoSim versions 2.2 dated 2012-11-16 and 3.0 dated 2014-10-16
Description: Plots a QQ-Norm Plot with several Gaussian simulations.
Author: Matthias Salvisberg
Maintainer: Matthias Salvisberg
DESCRIPTION | 18 +++++++++---------
MD5 | 13 ++++++++-----
NAMESPACE | 11 +++++++----
R/RcppExports.R |only
R/qqnormSim.R | 46 +++++++++++++++++++++-------------------------
man/StMoSim-package.Rd | 42 +++++++++++++++++++++++++++++++++++-------
man/qqnormSim.Rd | 23 ++++++++++++++++++-----
src |only
8 files changed, 98 insertions(+), 55 deletions(-)
Title: Simulation of Evolutionary and Epidemiological Dynamics
Diff between seedy versions 0.2 dated 2014-09-13 and 1.0 dated 2014-10-16
Description: Suite of functions for the simulation, visualisation and analysis of bacterial evolution within- and between-host.
Author: Colin Worby
Maintainer: Colin Worby
seedy-0.2/seedy/R/plotsnpfreq.R |only
seedy-1.0/seedy/DESCRIPTION | 10 +++----
seedy-1.0/seedy/MD5 | 18 ++++++++-----
seedy-1.0/seedy/R/gd.R | 28 +++++++++++---------
seedy-1.0/seedy/R/librtoDNA.R | 16 +++++------
seedy-1.0/seedy/R/plotobservedsnps.R |only
seedy-1.0/seedy/R/plotsnpfreq.r |only
seedy-1.0/seedy/R/transroutes.r |only
seedy-1.0/seedy/data/transmission.rda |only
seedy-1.0/seedy/man/plotobservedsnps.Rd |only
seedy-1.0/seedy/man/plotsnpfreq.Rd | 44 +++++++++-----------------------
seedy-1.0/seedy/man/seedy-package.Rd | 4 +-
seedy-1.0/seedy/man/transmission.Rd |only
seedy-1.0/seedy/man/transroutes.Rd |only
14 files changed, 56 insertions(+), 64 deletions(-)
Title: Wrapper functions for GUESS
Diff between R2GUESS versions 1.3 dated 2014-03-24 and 1.4 dated 2014-10-16
Description: Wrapper functions for GUESS, a GPU-enabled sparse Bayesian variable
selection method for linear regression based analysis of possibly
multivariate/correlated outcomes.
Author: Gianluca Campanella [cre],
Benoit Liquet [aut],
Marc Chadeau-Hyam [aut],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb]
Maintainer: Gianluca Campanella
DESCRIPTION | 26 ++++----
MD5 | 27 ++++-----
R/Postprocess.R2GUESS.R | 19 +++++-
R/R2GUESS.R | 30 ++++++++--
R/R2GUESS.perm.R | 8 +-
R/Resume.R2GUESS.R | 14 ++--
R/plotMPPI.R | 10 ++-
cleanup | 2
inst/Output/Example-GUESS-Y-Hopx_output_marg_prob_incl_mc.txt |only
man/Analysis.permutation.Rd | 2
man/FDR.permutation.Rd | 2
man/Postprocess.R2GUESS.Rd | 2
man/R2GUESS.Rd | 2
man/Resume.R2GUESS.Rd | 2
man/plotMPPI.Rd | 14 +++-
15 files changed, 101 insertions(+), 59 deletions(-)
Title: Nonparametric Circular Methods
Diff between NPCirc versions 2.0.0 dated 2013-10-23 and 2.0.1 dated 2014-10-16
Description: This package implements nonparametric smoothing methods for circular data.
Author: María Oliveira, Rosa M. Crujeiras and Alberto Rodríguez-Casal
Maintainer: María Oliveira
DESCRIPTION | 9 +++++----
MD5 | 34 ++++++++++++++++++----------------
NEWS |only
inst |only
man/NPCirc-package.Rd | 11 +++++++----
man/bw.CV.Rd | 3 +++
man/bw.boot.Rd | 3 +++
man/bw.pi.Rd | 3 +++
man/bw.reg.circ.lin.Rd | 2 ++
man/bw.rt.Rd | 3 +++
man/circsizer.density.Rd | 7 +++++--
man/circsizer.map.Rd | 11 ++++-------
man/circsizer.regression.Rd | 7 +++++--
man/dcircmix.Rd | 3 +++
man/kern.den.circ.Rd | 3 +++
man/kern.reg.circ.lin.Rd | 3 +++
man/lines.regression.circular.Rd | 5 +++++
man/plot.regression.circular.Rd | 5 +++++
man/speed.wind.Rd | 4 ++--
19 files changed, 79 insertions(+), 37 deletions(-)
More information about RcmdrPlugin.steepness at CRAN
Permanent link
Title: Permutation Distribution Clustering
Diff between pdc versions 0.5 dated 2014-02-13 and 1.0 dated 2014-10-16
Description: Permutation Distribution Clustering is a clustering method for time series. Dissimilarity of time series is formalized as the divergence between their permutation distributions. The permutation distribution was proposed as measure of the complexity of a time series.
Author: Andreas M. Brandmaier
Maintainer: Andreas M. Brandmaier
pdc-0.5/pdc/ChangeLog |only
pdc-0.5/pdc/R/alpha.divergence.R |only
pdc-0.5/pdc/R/convert.image.R |only
pdc-0.5/pdc/R/convert.matrix.R |only
pdc-0.5/pdc/R/convert.matrix.multichannel.R |only
pdc-0.5/pdc/R/divergencematrix.multichannel.R |only
pdc-0.5/pdc/R/entropy.heuristic.R |only
pdc-0.5/pdc/R/hellinger.distance.R |only
pdc-0.5/pdc/R/mds.plot.R |only
pdc-0.5/pdc/R/pdc.dist.R |only
pdc-0.5/pdc/R/squared.hellinger.distance.R |only
pdc-0.5/pdc/R/symmetric.alpha.divergence.R |only
pdc-0.5/pdc/R/trace.image.R |only
pdc-1.0/pdc/DESCRIPTION | 8 +-
pdc-1.0/pdc/MD5 | 76 ++++++++++++++------------
pdc-1.0/pdc/NAMESPACE | 27 ++++++---
pdc-1.0/pdc/NEWS |only
pdc-1.0/pdc/R/alphaDivergence.R |only
pdc-1.0/pdc/R/convertImage.R |only
pdc-1.0/pdc/R/convertMatrix.R |only
pdc-1.0/pdc/R/convertMatrixMultichannel.R |only
pdc-1.0/pdc/R/divergencematrix.R | 9 +++
pdc-1.0/pdc/R/divergencematrixMultichannel.R |only
pdc-1.0/pdc/R/entropyHeuristic.R |only
pdc-1.0/pdc/R/hellingerDistance.R |only
pdc-1.0/pdc/R/hypothesis.test.R | 1
pdc-1.0/pdc/R/loo1nn.R | 2
pdc-1.0/pdc/R/mdsPlot.R |only
pdc-1.0/pdc/R/pdcDist.R |only
pdc-1.0/pdc/R/pdclust.R | 10 +--
pdc-1.0/pdc/R/plot.mine.R | 8 ++
pdc-1.0/pdc/R/plot.pdclust.R | 53 +++++++++++++++++-
pdc-1.0/pdc/R/print.mine.R | 28 ++++++++-
pdc-1.0/pdc/R/print.pdclust.R | 3 -
pdc-1.0/pdc/R/squaredHellingerDistance.R |only
pdc-1.0/pdc/R/str.pdclust.R | 8 +-
pdc-1.0/pdc/R/symmetricAlphaDivergence.R |only
pdc-1.0/pdc/R/traceImage.R |only
pdc-1.0/pdc/data/complex.shapes.raw.rda |only
pdc-1.0/pdc/data/star.shapes.raw.rda |only
pdc-1.0/pdc/man/codebook.Rd | 17 -----
pdc-1.0/pdc/man/complex.shapes.Rd | 17 ++++-
pdc-1.0/pdc/man/distance.Rd | 13 ++--
pdc-1.0/pdc/man/entropy.heuristic.Rd | 44 ++++++++-------
pdc-1.0/pdc/man/loo1nn.Rd | 18 ------
pdc-1.0/pdc/man/mds.plot.Rd | 20 +++---
pdc-1.0/pdc/man/pdc-package.Rd | 24 +++-----
pdc-1.0/pdc/man/pdc.dist.Rd | 21 +------
pdc-1.0/pdc/man/pdclust.Rd | 31 ++++------
pdc-1.0/pdc/man/rasterPlot.Rd |only
pdc-1.0/pdc/man/star.shapes.Rd | 14 +++-
pdc-1.0/pdc/man/trace.image.Rd | 19 +++---
pdc-1.0/pdc/tests |only
53 files changed, 274 insertions(+), 197 deletions(-)
Title: Optimal transport in various forms
Diff between transport versions 0.6-2 dated 2014-06-22 and 0.6-3 dated 2014-10-16
Description: Solve optimal transport problems in statistics. Compute Wasserstein metrics (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p metrics), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, point patterns, and mass vectors.
Author: Dominic Schuhmacher
Maintainer: Dominic Schuhmacher
DESCRIPTION | 11 +++++------
MD5 | 8 ++++----
NEWS | 9 +++++++++
man/transport-package.Rd | 4 ++--
man/transport.Rd | 6 +++---
5 files changed, 23 insertions(+), 15 deletions(-)
Title: Meta-analysis for Classification Data and Correction to
Imperfect Reference
Diff between Metatron versions 0.1-0 dated 2013-12-16 and 0.1-1 dated 2014-10-16
Description: This package allows doing meta-analysis for primary studies with classification outcomes in order to evaluate systematically the accuracies of classifiers, namely, the diagnostic tests. It provides functions to fit the bivariate model of Reitsma et al.(2005). Moreover, if the reference employed in the classification process isn't a gold standard, its deficit can be detected and its influence to the underestimation of the diagnostic test's accuracy can be corrected, as described in Botella et al.(2013).
Author: Huiling Huang
Maintainer: Huiling Huang
DESCRIPTION | 8 +-
MD5 | 14 ++--
NAMESPACE | 4 +
NEWS | 4 -
R/imperfect.trees.r | 155 +++++++++++++++++++++++++--------------------------
R/perfect.trees.r | 95 +++++++++++++------------------
man/ccp.Rd | 3
man/perfect.trees.Rd | 2
8 files changed, 139 insertions(+), 146 deletions(-)
Title: General Frailty Models: Shared, Joint and Nested Frailty Models
with Prediction
Diff between frailtypack versions 2.7.1 dated 2014-10-08 and 2.7.2 dated 2014-10-16
Description: Frailtypack fits several classes of frailty models using a penalized likelihood
estimation on the hazard function but also a parametric estimation.
1) A shared frailty model (with gamma or log-normal frailty distribution) and Cox
proportional hazard model. Clustered and recurrent survival times can be studied.
2) Additive frailty models for proportional hazard models with two correlated
random effects (intercept random effect with random slope).
3) Nested frailty models for hierarchically clustered data (with 2 levels of
clustering) by including two iid gamma random effects.
4) Joint frailty models in the context of joint modelling for recurrent events
with terminal event for clustered data or not.
Prediction values are available. Left-truncated (not for Joint model),
right-censored data, interval-censored data (only for Cox proportional hazard
and shared frailty model) and strata are allowed. In each model,
the random effects have a gamma distribution, but you can switch to a log-normal
in shared and joint models. Now, you can also consider time-varying covariates
effects in Cox, shared and joint models. The package includes concordance measures
for Cox proportional hazards models and for shared frailty models.
Author: Virginie Rondeau, Juan R. Gonzalez, Yassin Mazroui, Audrey
Mauguen, Agnieszka Krol-Listwon, Amadou Diakite and Alexandre Laurent
Maintainer: Virginie Rondeau
DESCRIPTION | 12 ++++++------
MD5 | 6 +++---
NEWS | 6 ++++++
src/Makevars | 3 ++-
4 files changed, 17 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-12 1.1
2013-04-04 1.0
Title: Externally Studentized Midrange Distribution
Diff between SMR versions 1.0.0 dated 2012-10-19 and 2.0 dated 2014-10-16
Description: Computes the studentized midrange distribution (pdf, cdf and quantil) and generates random numbers
Author: Ben Deivide de Oliveira Batista, Daniel Furtado Ferreira
Maintainer: Daniel Furtado Ferreira
SMR-1.0.0/SMR/R/dSMR.R |only
SMR-1.0.0/SMR/R/pSMR.R |only
SMR-1.0.0/SMR/R/qSMR.R |only
SMR-1.0.0/SMR/R/rSMR.R |only
SMR-2.0/SMR/DESCRIPTION | 15 +--
SMR-2.0/SMR/MD5 | 14 +--
SMR-2.0/SMR/R/GaussLegendre.R | 22 ++--
SMR-2.0/SMR/R/SMR.R | 109 +++++++++++++++++------
SMR-2.0/SMR/R/StudentizedMidRange.R | 168 ++++++++++++++++++++----------------
SMR-2.0/SMR/man/SMR.Rd | 92 ++++++++++++-------
10 files changed, 262 insertions(+), 158 deletions(-)
Title: Calculate indices and theoretical physicochemical properties of
peptides and protein sequences
Diff between Peptides versions 1.0 dated 2014-08-30 and 1.0.1 dated 2014-10-16
Description: Calculate physicochemical properties and indices from aminoacid sequences of peptides and proteins. Include also utilities for read and plot GROMACS output files .XVG.
Author: Daniel Osorio, Paola Rondon-Villarreal and Rodrigo Torres.
Maintainer: Daniel Osorio
Peptides-1.0.1/Peptides/DESCRIPTION | 6 +++---
Peptides-1.0.1/Peptides/MD5 | 20 ++++++++++----------
Peptides-1.0.1/Peptides/R/hydrophobicity.R | 12 ++++++------
Peptides-1.0.1/Peptides/R/mw.R | 2 +-
Peptides-1.0.1/Peptides/data/H.RData |binary
Peptides-1.0.1/Peptides/data/pepdata.RData |binary
Peptides-1.0.1/Peptides/inst/tests/runit.mw.R | 2 +-
Peptides-1.0.1/Peptides/man/Peptides-package.Rd | 4 ++--
Peptides-1.0.1/Peptides/man/h.Rd | 9 +++------
Peptides-1.0.1/Peptides/man/hydrophobicity.Rd | 8 ++------
Peptides-1.0.1/Peptides/man/pepdata.Rd |only
Peptides-1.0/Peptides/man/Pepdata.Rd |only
12 files changed, 28 insertions(+), 35 deletions(-)