Title: Read and Analyze PLEXOS Solutions from R
Diff between rplexos versions 0.10 dated 2014-10-16 and 0.10.0.1 dated 2014-10-20
Description: This package contains functions to efficiently convert PLEXOS
solutions into SQLite databases and to extract information from those
databases to perform analysis. It supports collation of solutions that may
have divided into different time partitions, as well as the comparison
across different scenarios.
Author: Eduardo Ibanez [aut, cre],
National Renewable Energy Laboratory [cph]
Maintainer: Eduardo Ibanez
DESCRIPTION | 6 +++---
MD5 | 29 ++++++++++++++++++++++++++---
R/process_solution.R | 4 ++--
inst/web |only
vignettes/rplexos.Rmd | 8 ++++----
5 files changed, 35 insertions(+), 12 deletions(-)
Title: Simpler Regular Expressions
Diff between rex versions 0.1.0 dated 2014-10-14 and 0.1.1 dated 2014-10-20
Description: A simpler, human-readable interface for the
construction of regular expressions.
Author: Kevin Ushey [aut],
Jim Hester [cre, aut]
Maintainer: Jim Hester
DESCRIPTION | 17 ++++--
MD5 | 26 ++++-----
R/character_class.R | 17 +++---
R/escape.R | 6 +-
R/match.R | 50 ++++++++++++++---
R/rex-mode.R | 9 +--
build/vignette.rds |binary
man/character_class.Rd | 17 ++++--
man/re_matches.Rd | 7 ++
man/rex_mode.Rd | 7 +-
tests/testthat/test-capture.R | 4 -
tests/testthat/test-character_class.R | 18 +++---
tests/testthat/test-match.R | 95 ++++++++++++++++++++++++++++++++++
vignettes/log_parsing.Rmd | 15 ++---
14 files changed, 217 insertions(+), 71 deletions(-)
Title: R interface to REDCap
Diff between redcapAPI versions 1.0 dated 2014-09-15 and 1.0.1 dated 2014-10-20
Description: Access data stored in REDCap databases using the Application Programming Interface (API). REDCap (Research Electronic Data CAPture) is a web application for building and managing online surveys and databases developed at Vanderbilt University. The API allows users to access data and project meta data (such as the data dictionary) from the web programmatically. The redcapAPI package facilitates the process of accessing data with options to prepare an analysis-ready data set consistent with the definitions in a database's data dictionary.
Author: Benjamin Nutter. Initiated by Jeffrey Horner and Will Gray with contributions from Jeremy Stephens, and Will Beasley
Maintainer: Benjamin Nutter
DESCRIPTION | 8 ++++----
MD5 | 29 ++++++++++++++++-------------
NEWS |only
R/apiCall.R |only
R/compareRedcapVersion.R | 2 +-
R/exportMetaData.R | 12 +++++-------
R/exportRecords.R | 8 ++++----
R/exportReports.R | 2 +-
R/fieldToVar.R | 17 +++++++++++++++--
R/importRecords.R | 14 +++++++++++++-
R/recodeCheck.R | 4 ++--
R/redcapProjectInfo.R | 42 +++++++++++++++++++++++++++++++++++-------
README.md | 2 ++
inst/CITATION | 1 +
man/apiCall.Rd |only
man/fieldToVar.Rd | 3 ++-
man/importRecords.Rd | 3 ++-
17 files changed, 103 insertions(+), 44 deletions(-)
Title: Nonparametric spatial (geo)statistics
Diff between npsp versions 0.2-4 dated 2013-11-04 and 0.3-6 dated 2014-10-20
Description: Multidimensional nonparametric spatio-temporal geostatistics.
S3 classes and methods for multidimensional: gridded data, linear binning,
local polynomial kernel regression, density and variogram estimation.
Nonparametric methods for trend and/or variogram inferences.
Author: Ruben Fernandez-Casal
Maintainer: Ruben Fernandez-Casal
npsp-0.2-4/npsp/R/h.cv.R |only
npsp-0.3-6/npsp/DESCRIPTION | 10 +-
npsp-0.3-6/npsp/MD5 | 106 +++++++++++++----------
npsp-0.3-6/npsp/NAMESPACE | 36 +++++++
npsp-0.3-6/npsp/R/bin.data.R | 62 +++++++++++--
npsp-0.3-6/npsp/R/cov.R |only
npsp-0.3-6/npsp/R/cpu.time.R |only
npsp-0.3-6/npsp/R/data.grid.R | 3
npsp-0.3-6/npsp/R/grid.par.R | 2
npsp-0.3-6/npsp/R/h.cv.r |only
npsp-0.3-6/npsp/R/interp.R | 31 ++++++
npsp-0.3-6/npsp/R/locpol.bin.R | 64 +++++++-------
npsp-0.3-6/npsp/R/np.den.R | 23 ++---
npsp-0.3-6/npsp/R/np.svar.R | 155 ++++++++++++++++++++++++++++++----
npsp-0.3-6/npsp/R/npsp-geoR.R | 14 ++-
npsp-0.3-6/npsp/R/npsp-gstat.R | 15 +--
npsp-0.3-6/npsp/R/npsp-internals.R | 33 +++++--
npsp-0.3-6/npsp/R/npsp-package.R | 34 ++++++-
npsp-0.3-6/npsp/R/npsp-plot.R |only
npsp-0.3-6/npsp/R/rgraphics.R |only
npsp-0.3-6/npsp/R/simage.R |only
npsp-0.3-6/npsp/R/spersp.R |only
npsp-0.3-6/npsp/R/splot.R |only
npsp-0.3-6/npsp/R/spoints.R |only
npsp-0.3-6/npsp/R/svar.bin.R | 28 +++---
npsp-0.3-6/npsp/R/svarmod.R | 57 +++---------
npsp-0.3-6/npsp/R/svarmod.sb.R | 71 ++++++++-------
npsp-0.3-6/npsp/R/zzz.R | 13 ++
npsp-0.3-6/npsp/demo/00Index | 10 +-
npsp-0.3-6/npsp/demo/aquifer.R | 127 ++++++++++++++++++++-------
npsp-0.3-6/npsp/demo/binning.R | 60 +++++--------
npsp-0.3-6/npsp/demo/datagrid.R | 12 +-
npsp-0.3-6/npsp/demo/locpol.R | 53 +++++------
npsp-0.3-6/npsp/demo/variogram.R | 47 ++++------
npsp-0.3-6/npsp/inst/CHANGES | 116 ++++++++++++++++++++++++-
npsp-0.3-6/npsp/inst/TODO | 45 ++-------
npsp-0.3-6/npsp/man/aquifer.Rd | 2
npsp-0.3-6/npsp/man/bin.den.Rd | 8 -
npsp-0.3-6/npsp/man/binning.Rd | 30 +++++-
npsp-0.3-6/npsp/man/covar.Rd | 29 ++++--
npsp-0.3-6/npsp/man/cpu.time.Rd |only
npsp-0.3-6/npsp/man/disc.sb.Rd | 14 +--
npsp-0.3-6/npsp/man/earthquakes.Rd | 2
npsp-0.3-6/npsp/man/fitsvar.sb.iso.Rd | 37 ++++----
npsp-0.3-6/npsp/man/grid.par.Rd | 2
npsp-0.3-6/npsp/man/h.cv.Rd | 71 ++++++++-------
npsp-0.3-6/npsp/man/interp.Rd | 5 -
npsp-0.3-6/npsp/man/locpol.Rd | 48 +++++-----
npsp-0.3-6/npsp/man/np.den.Rd | 11 --
npsp-0.3-6/npsp/man/np.svar.Rd | 77 +++++++++++++---
npsp-0.3-6/npsp/man/npsp-internals.Rd | 14 ++-
npsp-0.3-6/npsp/man/npsp-package.Rd | 30 +++++-
npsp-0.3-6/npsp/man/rgraphics.Rd |only
npsp-0.3-6/npsp/man/simage.Rd |only
npsp-0.3-6/npsp/man/spersp.Rd |only
npsp-0.3-6/npsp/man/splot.Rd |only
npsp-0.3-6/npsp/man/spoints.Rd |only
npsp-0.3-6/npsp/man/sv.Rd | 2
npsp-0.3-6/npsp/man/svar.bin.Rd | 6 -
npsp-0.3-6/npsp/man/svar.plot.Rd |only
npsp-0.3-6/npsp/man/varcov.Rd |only
npsp-0.3-6/npsp/src/grid_module.f90 | 29 +++---
npsp-0.3-6/npsp/src/lp_module.f90 | 62 ++++++++-----
63 files changed, 1135 insertions(+), 571 deletions(-)
Title: Imputing the Last Largest Censored Observation(s) under Weighted
Least Squares
Diff between imputeYn versions 1.1 dated 2013-02-24 and 1.2 dated 2014-10-20
Description: If Kaplan-Meier weights are involved in modeling, especially solving AFT model using weighted least squares method, the package gives alternative choices to the Efron's tail correction approach that brings estimates with less bias and more efficiency
Author: Hasinur Rahaman Khan and Ewart Shaw
Maintainer: Hasinur Rahaman Khan
DESCRIPTION | 21 ++++++++-------------
MD5 | 20 ++++++++++----------
NAMESPACE | 1 +
R/imputeYn.R | 2 +-
man/aft.qp.Rd | 6 +++---
man/data.Rd | 2 +-
man/imputeYn-package.Rd | 12 ++++++------
man/imputeYn.Rd | 9 ++++-----
man/imputeYn.extra.Rd | 8 ++++----
man/lss.mod.Rd | 6 +++---
man/print.imputeYn.Rd | 2 +-
11 files changed, 42 insertions(+), 47 deletions(-)
Title: Rook - a web server interface for R
Diff between Rook versions 1.0-9 dated 2013-01-11 and 1.1-1 dated 2014-10-20
Description: This package contains the Rook specification and
convenience software for building and running Rook applications. To
get started, be sure and read the 'Rook' help file first.
Author: Jeffrey Horner
Maintainer: Jeffrey Horner
DESCRIPTION | 17 +++++++------
MD5 | 21 ++++++++--------
NAMESPACE | 4 +++
R/Brewery.R | 24 ++++++++++++------
R/File.R | 50 ++++++++++++++++++++++++++++++++-------
R/Rhttpd.R | 32 +++++++++++++++----------
R/utils.R | 32 ++++++++++++++++++++++---
README.md | 4 +--
inst/exampleApps/arrayparams.R |only
inst/servers/rApache.R | 52 +++++++++++++++++++++++++++++++++--------
man/Request-class.Rd | 2 -
man/Response-class.Rd | 3 +-
12 files changed, 177 insertions(+), 64 deletions(-)
Title: Mixed ICA/PCA
Diff between icapca versions 1.0 dated 2014-01-02 and 1.1 dated 2014-10-20
Description: Implements mixed ICA/PCA model for blind source separation, potentially with inclusion of Gaussian sources
Author: Roger Woods
Maintainer: Roger Woods
DESCRIPTION | 8
MD5 | 19 -
R/icapca.R | 42 ++-
man/ica_pca.Rd | 59 +++-
src/AIR.h | 26 +
src/config.h | 2
src/ica_MLCf15.c | 5
src/ica_pca_R.c | 16 -
src/ica_sources_aic15.c | 665 ++++++++++++++++++++++++++++++++++++------------
src/random_rotation.c | 22 +
src/random_rotation2.c |only
11 files changed, 660 insertions(+), 204 deletions(-)
Title: Shrinkage Covariance Matrix Estimators
Diff between ShrinkCovMat versions 1.0.1 dated 2014-08-12 and 1.0.2 dated 2014-10-20
Description: The package ShrinkCovMat provides nonparametric Steinian shrinkage estimators of the covariance matrix that are suitable in high dimensional settings, that is when the number of variables is larger than the sample size.
Author: Anestis Touloumis
Maintainer: Anestis Touloumis
ShrinkCovMat-1.0.1/ShrinkCovMat/NEWS |only
ShrinkCovMat-1.0.2/ShrinkCovMat/DESCRIPTION | 10 ++--
ShrinkCovMat-1.0.2/ShrinkCovMat/MD5 | 24 +++++------
ShrinkCovMat-1.0.2/ShrinkCovMat/NAMESPACE | 2
ShrinkCovMat-1.0.2/ShrinkCovMat/R/shrinkcovmat.equal.R | 2
ShrinkCovMat-1.0.2/ShrinkCovMat/R/shrinkcovmat.identity.R | 3 -
ShrinkCovMat-1.0.2/ShrinkCovMat/R/shrinkcovmat.unequal.R | 3 -
ShrinkCovMat-1.0.2/ShrinkCovMat/R/targetselection.R |only
ShrinkCovMat-1.0.2/ShrinkCovMat/inst/CITATION | 15 +++---
ShrinkCovMat-1.0.2/ShrinkCovMat/inst/NEWS |only
ShrinkCovMat-1.0.2/ShrinkCovMat/man/ShrinkCovMat-package.Rd | 6 +-
ShrinkCovMat-1.0.2/ShrinkCovMat/man/shrinkcovmat.equal.Rd | 2
ShrinkCovMat-1.0.2/ShrinkCovMat/man/shrinkcovmat.identity.Rd | 2
ShrinkCovMat-1.0.2/ShrinkCovMat/man/shrinkcovmat.unequal.Rd | 4 -
ShrinkCovMat-1.0.2/ShrinkCovMat/man/targetselection.Rd |only
15 files changed, 39 insertions(+), 34 deletions(-)
Title: Nonparametric maximum likelihood estimation for random effect
models
Diff between npmlreg versions 0.45-5 dated 2014-07-10 and 0.46-1 dated 2014-10-20
Description: Nonparametric maximum likelihood estimation or Gaussian
quadrature for overdispersed generalized linear models and
variance component models
Author: Jochen Einbeck, Ross Darnell and John Hinde
Maintainer: Jochen Einbeck
DESCRIPTION | 12
MD5 | 34 -
R/alldist.R | 1094 ++++++++++++++++++++++++-----------------------
R/allvc.R | 44 +
R/print.glmmNPML.R | 1
R/summary.glmmNPML.R | 1
build/vignette.rds |binary
data/hosp.rda |binary
data/irlsuicide.rda |binary
data/missouri.rda |binary
inst/doc/npmlreg-v.Rtex | 6
inst/doc/npmlreg-v.pdf |binary
man/alldist.Rd | 35 +
man/npmlreg.package.Rd | 4
man/predict.glmmNPML.Rd | 6
man/summary.glmmNPML.Rd | 6
man/tolfind.Rd | 11
vignettes/npmlreg-v.Rtex | 6
18 files changed, 682 insertions(+), 578 deletions(-)
Title: Multi-way Standard Error Clustering
Diff between multiwayvcov versions 1.2.0 dated 2014-09-06 and 1.2.1 dated 2014-10-20
Description: Exports two functions implementing
multi-way clustering using the method suggested by Cameron, Gelbach, &
Miller (2011) and cluster (or block)
bootstrapping for estimating variance-covariance matrices. Normal one and
two-way clustering matches the results of other common statistical
packages. Missing values are handled transparently and rudimentary
parallelization support is provided.
Author: Nathaniel Graham and Mahmood Arai and Björn Hagströmer
Maintainer: Nathaniel Graham
DESCRIPTION | 23 ++++-----
MD5 | 14 ++---
NAMESPACE | 4 +
R/cluster_boot.r | 127 +++++++++++++++++++++++++++++++++++++++++++---------
R/cluster_vcov.r | 9 ++-
man/cluster.boot.Rd | 56 +++++++++++++++++++---
man/cluster.vcov.Rd | 14 ++---
man/petersen.Rd | 2
8 files changed, 189 insertions(+), 60 deletions(-)
Title: CoxPH Model with Log Concave Baseline Distribution
Diff between logconPH versions 1.0 dated 2014-10-18 and 1.1 dated 2014-10-20
Description: Computes a cox PH model with a log concave baseline distribution. If no covariates are provided, estimates the log concave NPMLE. Built specifically for interval censored data, where data is a n by 2 matrix with [i, 1] as the left side of the interval for subject i and [i,2] as right side. Uncensored data can be entered by setting [i,1] = [i,2]. Alternatively, this can also handle uncensored data. If all the data is uncensored, you may enter data as a length(n) vector.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman
DESCRIPTION | 6
MD5 | 16 -
R/LogConcave.R | 4
src/Cpp2Source/Array.hh | 598 +++++++++++++++++++++---------------------
src/Cpp2Source/QuadProg++.cc | 42 +-
src/Cpp2Source/baseClass.cpp | 52 +--
src/Cpp2Source/baseClass.h | 7
src/Cpp2Source/logconcave.cpp | 132 ++++-----
src/logconPH.cpp | 83 ++---
9 files changed, 475 insertions(+), 465 deletions(-)