Title: Robust PCA by Projection Pursuit
Diff between pcaPP versions 1.9-50 dated 2014-09-19 and 1.9-60 dated 2014-10-21
Description: Robust PCA by Projection Pursuit
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: Valentin Todorov
ChangeLog |only
DESCRIPTION | 15 ++++++---------
MD5 | 7 ++++---
NAMESPACE | 2 +-
build/vignette.rds |binary
5 files changed, 11 insertions(+), 13 deletions(-)
Title: An R Interface to the Oniguruma Regular Expression Library
Diff between ore versions 1.0.0 dated 2014-10-20 and 1.0.1 dated 2014-10-21
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Oniguruma library. It offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden, based on Onigmo by K. Kosako and K. Takata
Maintainer: Jon Clayden
DESCRIPTION | 8 ++++----
MD5 | 12 +++++++-----
NEWS |only
R/ore.R | 6 +++---
README.md | 2 ++
man/ore.Rd | 6 +++---
tests/testthat/drink.txt |only
tests/testthat/test-10-match.R | 2 +-
8 files changed, 20 insertions(+), 16 deletions(-)
Title: Data Analysis Tool for Pharmacokinetics
Diff between PKfit versions 1.2.3 dated 2014-08-21 and 1.2.4 dated 2014-10-21
Description: PKfit is a nonlinear regression program
which is designed to perform model/curve fitting
and model simulations for pharmacokinetics.
Author: Chun-ying Lee, Yung-jin Lee
Maintainer: Yung-jin Lee
DESCRIPTION | 12 ++++-----
MD5 | 49 +++++++++++++++++++--------------------
NAMESPACE | 1
NEWS | 13 +++++++++-
R/description_version.r | 3 +-
R/fbolus1.R | 44 +++++++++++++++++------------------
R/fbolus2.R | 32 ++++++++++++-------------
R/fbolus3.R | 38 +++++++++++++++---------------
R/fbolus3.mm.R | 38 +++++++++++++++---------------
R/ffirst.lag.R | 48 +++++++++++++++++++-------------------
R/ffirst.nolag.R | 48 +++++++++++++++++++-------------------
R/ffirst2.R | 37 +++++++++++++++--------------
R/finfu1.R | 44 +++++++++++++++++------------------
R/finfu2.R | 34 +++++++++++++--------------
R/fmacro.three.R | 39 +++++++++++++++----------------
R/fmacro.two.R | 35 +++++++++++++--------------
R/fzero.nolag.R | 48 +++++++++++++++++++-------------------
R/iv.bolus.demo.R | 16 +++++++-----
R/mcsim.demo.R | 2 -
R/mmpk.demo.R | 19 +++++++--------
R/plotting.lin.R | 3 +-
R/plotting.non.R | 2 -
R/plotting.sim.R | 2 -
R/zzz.R | 2 -
inst/CITATION |only
inst/UserDefinedModels/mymodel.R | 24 ++++++++++++-------
26 files changed, 329 insertions(+), 304 deletions(-)
Title: Miscellaneous Esoteric Statistical Scripts
Diff between MESS versions 0.2-1 dated 2014-03-19 and 0.3-2 dated 2014-10-21
Description: A mixed collection of useful and semi-useful functions, some of
which may even be referenced in The R Primer book.
Author: Claus Ekstrom
Maintainer: Claus Ekstrom
DESCRIPTION | 19 +--
MD5 | 48 +++++++--
NAMESPACE | 8 +
R/adaptive.weights.R |only
R/common.shared.R | 6 -
R/desctable.R |only
R/drop1.geeglm.R | 68 +++++++------
R/feature.test.R | 232 +++++++++++++++++++++++++++++++++++++---------
R/fitted.geese.R | 3
R/gkgamma.R |only
R/power.binom.test.R |only
R/power.mcnemar.test.R |only
R/qic.R | 88 +++++++++++++++++
R/scorefct.R |only
data/bees.rda |only
data/clotting.RData |only
data/datalist |only
data/greenland.rda |only
data/qpcr.rda |only
data/rainman.rda |only
data/soccer.rda |binary
data/superroot2.rda |only
man/QIC.Rd | 2
man/adaptive.weights.Rd |only
man/bees.Rd |only
man/clotting.Rd |only
man/desctable.Rd |only
man/drop1.geeglm.Rd | 2
man/feature.test.Rd | 23 +++-
man/gkgamma.Rd |only
man/greenland.Rd |only
man/power.binom.test.Rd |only
man/power.mcnemar.test.Rd |only
man/qpcr.Rd |only
man/rainman.Rd |only
man/soccer.Rd | 17 +--
man/superroot2.Rd |only
37 files changed, 397 insertions(+), 119 deletions(-)
Title: Observed-Score Linking and Equating
Diff between equate versions 2.0-2 dated 2014-02-22 and 2.0-3 dated 2014-10-21
Description: Contains methods for observed-score linking
and equating under the single-group, equivalent-groups,
and nonequivalent-groups with anchor test(s) designs.
Equating types include identity, mean, linear, general
linear, equipercentile, circle-arc, and composites of
these. Equating methods include synthetic, nominal
weights, Tucker, Levine observed score, Levine true
score, Braun/Holland, frequency estimation, and chained
equating. Plotting and summary methods, and methods for
multivariate presmoothing and bootstrap error estimation
are also provided.
Author: Anthony Albano
Maintainer: Anthony Albano
equate-2.0-2/equate/R/smoothing.r |only
equate-2.0-2/equate/man/equate-package.rd |only
equate-2.0-3/equate/DESCRIPTION | 30 -
equate-2.0-3/equate/MD5 | 59 +-
equate-2.0-3/equate/NAMESPACE | 45 +
equate-2.0-3/equate/NEWS | 41 +
equate-2.0-3/equate/R/circlearc.R | 25 -
equate-2.0-3/equate/R/composite.R | 13
equate-2.0-3/equate/R/equate.R | 68 +-
equate-2.0-3/equate/R/equipercentile.R | 94 +--
equate-2.0-3/equate/R/error.R | 109 ++--
equate-2.0-3/equate/R/freqtab.R | 553 ++++++++++++++++-------
equate-2.0-3/equate/R/linear.R | 36 -
equate-2.0-3/equate/R/smoothing.R |only
equate-2.0-3/equate/R/synthetic.R | 121 ++---
equate-2.0-3/equate/build/vignette.rds |binary
equate-2.0-3/equate/data/KBneat.rdata |binary
equate-2.0-3/equate/inst/doc/equatevignette.R | 247 ++++++----
equate-2.0-3/equate/inst/doc/equatevignette.Rnw | 514 ++++++++++++++++-----
equate-2.0-3/equate/inst/doc/equatevignette.pdf |binary
equate-2.0-3/equate/man/composite.Rd | 7
equate-2.0-3/equate/man/descriptives.Rd | 64 +-
equate-2.0-3/equate/man/equate-package.Rd |only
equate-2.0-3/equate/man/equate.Rd | 50 +-
equate-2.0-3/equate/man/error.Rd | 34 +
equate-2.0-3/equate/man/freqtab.Rd | 115 +++-
equate-2.0-3/equate/man/percentiles.Rd |only
equate-2.0-3/equate/man/plot.bootstrap.Rd | 11
equate-2.0-3/equate/man/plot.equate.Rd | 15
equate-2.0-3/equate/man/plot.freqtab.Rd | 15
equate-2.0-3/equate/man/presmoothing.Rd | 106 ++--
equate-2.0-3/equate/vignettes/equatebibfile.bib | 24
equate-2.0-3/equate/vignettes/equatevignette.Rnw | 514 ++++++++++++++++-----
33 files changed, 1987 insertions(+), 923 deletions(-)
Title: Package for Environmental Statistics, including US EPA Guidance
Diff between EnvStats versions 1.0.2 dated 2013-10-30 and 1.0.3 dated 2014-10-21
Description: Functions and datasets to perform analyses of environmental data.
Author: Steven P. Millard
Maintainer: Steven P. Millard
DESCRIPTION | 10
MD5 | 386 ++++++++++++------------
NAMESPACE | 1
NEWS | 89 +++++
R/anovaPE.R | 27 +
R/calibrate.R | 149 +++++++--
R/cdfCompare.R | 2
R/cdfPlot.R | 8
R/check.distribution.args.R | 12
R/check.distribution.args.simulate.R | 12
R/chisqGofTest.R | 2
R/ci.epoisCensored.profile.likelihood.R | 34 +-
R/ci.gammaAltCensored.profile.likelihood.R | 37 +-
R/detectionLimitCalibrate.R | 10
R/egammaAltCensored.R | 22 -
R/egammaAltCensored.bootstrap.ci.R | 43 +-
R/egammaAltCensored.mle.R | 2
R/egammaCensored.R | 25 -
R/elnormAltCensored.R | 7
R/elnormAltMultiplyCensored.R | 26 -
R/elnormAltMultiplyCensored.bootstrap.ci.R | 44 +-
R/elnormAltMultiplyCensored.mle.R | 35 +-
R/elnormAltSinglyCensored.R | 22 -
R/elnormAltSinglyCensored.bootstrap.ci.R | 43 +-
R/elnormAltSinglyCensored.mle.R | 35 +-
R/elnormCensored.R | 8
R/elnormMultiplyCensored.R | 18 -
R/elnormSinglyCensored.R | 18 -
R/enorm.R | 7
R/enormCensored.R | 8
R/enormMultiplyCensored.R | 24 -
R/enormMultiplyCensored.bootstrap.ci.R | 44 +-
R/enormMultiplyCensored.mle.R | 40 +-
R/enormSinglyCensored.R | 24 -
R/enormSinglyCensored.bootstrap.ci.R | 43 +-
R/enormSinglyCensored.mle.R | 34 +-
R/enparCensored.R | 25 -
R/enparCensored.bootstrap.ci.R | 82 +++--
R/enparCensored.jackknife.R | 9
R/epoisCensored.R | 7
R/epoisMultiplyCensored.R | 24 -
R/epoisMultiplyCensored.bootstrap.ci.R | 45 +-
R/epoisMultiplyCensored.mle.R | 2
R/epoisSinglyCensored.R | 24 -
R/epoisSinglyCensored.bootstrap.ci.R | 45 +-
R/epoisSinglyCensored.mle.R | 2
R/gofTest.default.R | 3
R/kendallSeasonalTrendTest.default.R | 52 ---
R/ksGofTest.R | 2
R/oneSamplePermutationTest.R | 8
R/pdfPlot.R | 8
R/ppccGeneralGofTest.R | 3
R/print.gofOutlier.R |only
R/print.intervalEstimateCensored.R | 19 -
R/qqPlot.R | 2
R/qqPlotGestalt.R | 2
R/rosnerTest.R |only
R/rosnerTestLambda.R |only
R/sfGeneralGofTest.R | 3
R/sfMultiplyCensoredGofTest.R | 4
R/signTest.R | 17 -
R/simulateMvMatrix.R | 4
R/simulateVector.R | 4
R/stripChart.default.R | 212 +++++++------
R/swGeneralGofTest.R | 3
R/twoSamplePermutationTestLocation.R | 11
data/Air.df.rda |binary
data/Benthic.df.rda |binary
data/Distribution.df.rda |binary
data/EPA.02d.Ex.2.ug.per.L.vec.rda |binary
data/EPA.02d.Ex.4.mg.per.kg.vec.rda |binary
data/EPA.02d.Ex.6.mg.per.kg.vec.rda |binary
data/EPA.02d.Ex.9.mg.per.L.vec.rda |binary
data/EPA.09.Ex.10.1.nickel.df.rda |binary
data/EPA.09.Ex.11.1.arsenic.df.rda |binary
data/EPA.09.Ex.12.1.ccl4.df.rda |binary
data/EPA.09.Ex.12.4.naphthalene.df.rda |binary
data/EPA.09.Ex.13.1.iron.df.rda |binary
data/EPA.09.Ex.14.1.manganese.df.rda |binary
data/EPA.09.Ex.14.3.alkalinity.df.rda |binary
data/EPA.09.Ex.14.4.arsenic.df.rda |binary
data/EPA.09.Ex.14.8.df.rda |binary
data/EPA.09.Ex.15.1.manganese.df.rda |binary
data/EPA.09.Ex.16.1.sulfate.df.rda |binary
data/EPA.09.Ex.16.2.benzene.df.rda |binary
data/EPA.09.Ex.16.4.copper.df.rda |binary
data/EPA.09.Ex.16.5.PCE.df.rda |binary
data/EPA.09.Ex.17.1.loglead.df.rda |binary
data/EPA.09.Ex.17.2.toluene.df.rda |binary
data/EPA.09.Ex.17.3.chrysene.df.rda |binary
data/EPA.09.Ex.17.3.log.chrysene.df.rda |binary
data/EPA.09.Ex.17.4.copper.df.rda |binary
data/EPA.09.Ex.17.5.chloride.df.rda |binary
data/EPA.09.Ex.17.6.sulfate.df.rda |binary
data/EPA.09.Ex.17.7.sodium.df.rda |binary
data/EPA.09.Ex.18.1.arsenic.df.rda |binary
data/EPA.09.Ex.18.2.chrysene.df.rda |binary
data/EPA.09.Ex.18.3.TCE.df.rda |binary
data/EPA.09.Ex.18.4.xylene.df.rda |binary
data/EPA.09.Ex.19.1.sulfate.df.rda |binary
data/EPA.09.Ex.19.2.chloride.df.rda |binary
data/EPA.09.Ex.19.5.mercury.df.rda |binary
data/EPA.09.Ex.20.1.nickel.df.rda |binary
data/EPA.09.Ex.21.1.aldicarb.df.rda |binary
data/EPA.09.Ex.21.2.benzene.df.rda |binary
data/EPA.09.Ex.21.5.beryllium.df.rda |binary
data/EPA.09.Ex.21.6.nitrate.df.rda |binary
data/EPA.09.Ex.21.7.TCE.df.rda |binary
data/EPA.09.Ex.22.1.VC.df.rda |binary
data/EPA.09.Ex.22.2.Specific.Conductance.df.rda |binary
data/EPA.09.Ex.6.3.sulfate.df.rda |binary
data/EPA.09.Ex.7.1.arsenic.df.rda |binary
data/EPA.09.Table.9.1.TCE.df.rda |binary
data/EPA.09.Table.9.3.df.rda |binary
data/EPA.09.Table.9.4.nickel.vec.rda |binary
data/EPA.89b.aldicarb1.df.rda |binary
data/EPA.89b.aldicarb2.df.rda |binary
data/EPA.89b.benzene.df.rda |binary
data/EPA.89b.cadmium.df.rda |binary
data/EPA.89b.chlordane1.df.rda |binary
data/EPA.89b.chlordane2.df.rda |binary
data/EPA.89b.edb.df.rda |binary
data/EPA.89b.lead.df.rda |binary
data/EPA.89b.loglead.df.rda |binary
data/EPA.89b.manganese.df.rda |binary
data/EPA.89b.sulfate.df.rda |binary
data/EPA.89b.t29.df.rda |binary
data/EPA.89b.toc.vec.rda |binary
data/EPA.92c.arsenic1.df.rda |binary
data/EPA.92c.arsenic2.df.rda |binary
data/EPA.92c.arsenic3.df.rda |binary
data/EPA.92c.benzene1.df.rda |binary
data/EPA.92c.benzene2.df.rda |binary
data/EPA.92c.ccl4.df.rda |binary
data/EPA.92c.chrysene.df.rda |binary
data/EPA.92c.copper1.df.rda |binary
data/EPA.92c.copper2.df.rda |binary
data/EPA.92c.lognickel1.df.rda |binary
data/EPA.92c.nickel1.df.rda |binary
data/EPA.92c.nickel2.df.rda |binary
data/EPA.92c.toluene.df.rda |binary
data/EPA.92c.zinc.df.rda |binary
data/EPA.92d.chromium.df.rda |binary
data/EPA.92d.chromium.vec.rda |binary
data/EPA.94b.lead.df.rda |binary
data/EPA.94b.tccb.df.rda |binary
data/EPA.97.cadmium.111.df.rda |binary
data/Environmental.df.rda |binary
data/Gibbons.et.al.09.Alkilinity.vec.rda |binary
data/Gibbons.et.al.09.Vinyl.Chloride.vec.rda |binary
data/Graham.et.al.75.etu.df.rda |binary
data/Helsel.Cohn.88.app.b.df.rda |binary
data/Helsel.Cohn.88.silver.df.rda |binary
data/Lin.Evans.80.df.rda |binary
data/Millard.Deverel.88.df.rda |binary
data/Modified.TcCB.df.rda |binary
data/NIOSH.89.air.lead.vec.rda |binary
data/Olympic.NH4.df.rda |binary
data/Ozone.NE.df.rda |binary
data/Refinery.CO.df.rda |binary
data/Skagit.NH3_N.df.rda |binary
data/Total.P.df.rda |binary
inst/doc/EnvStats-manual.pdf |binary
man/EnvStats-package.Rd | 12
man/FcnsByCatGOFTests.Rd | 12
man/FcnsByCatPower.Rd | 2
man/anovaPE.Rd | 69 +++-
man/aovPower.Rd | 3
man/boxcox.Rd | 24 +
man/boxcox.object.Rd | 3
man/calibrate.Rd | 115 ++++---
man/ciBinomN.Rd | 2
man/detectionLimitCalibrate.Rd | 61 +--
man/egammaAltCensored.Rd | 65 ++--
man/egammaCensored.Rd | 63 ++-
man/elnormAltCensored.Rd | 61 ++-
man/elnormCensored.Rd | 11
man/enorm.Rd | 4
man/enormCensored.Rd | 59 +--
man/enparCensored.Rd | 89 +++--
man/epoisCensored.Rd | 57 +--
man/gof.object.Rd | 4
man/gofOutlier.object.Rd |only
man/gofTest.Rd | 3
man/kendallSeasonalTrendTest.Rd | 4
man/oneSamplePermutationTest.Rd | 6
man/plotPredIntLnormAltTestPowerCurve.Rd | 46 +-
man/predIntNparSimultaneousTestPower.Rd | 2
man/print.gofOutlier.Rd |only
man/propTestN.Rd | 6
man/propTestPower.Rd | 8
man/qqPlotGestalt.Rd | 6
man/rosnerTest.Rd |only
man/skewness.Rd | 10
man/stripChart.Rd | 49 +--
man/tTestPower.Rd | 6
man/twoSamplePermutationTestLocation.Rd | 6
197 files changed, 1685 insertions(+), 1156 deletions(-)
Title: The prevalence package
Diff between prevalence versions 0.2.0 dated 2013-09-22 and 0.3.0 dated 2014-10-21
Description: Tools for prevalence assessment studies. IMPORTANT: the truePrev functions in the prevalence package call on JAGS (Just Another Gibbs Sampler), which therefore has to be available on the user's system. JAGS can be downloaded from http://sourceforge.net/projects/mcmc-jags/files/
Author: Brecht Devleesschauwer [aut, cre], Paul Torgerson [aut],
Johannes Charlier [aut], Bruno Levecke [aut], Nicolas Praet [aut],
Sophie Roelandt [aut], Suzanne Smit [aut], Pierre Dorny [aut],
Dirk Berkvens [aut], Niko Speybroeck [aut]
Maintainer: Brecht Devleesschauwer
prevalence-0.2.0/prevalence/R/checkMultiPrior.R |only
prevalence-0.2.0/prevalence/R/definitions.R |only
prevalence-0.2.0/prevalence/R/explode.R |only
prevalence-0.2.0/prevalence/R/multiModel_SeSp.R |only
prevalence-0.2.0/prevalence/R/multiModel_probs.R |only
prevalence-0.2.0/prevalence/R/multiModel_select.R |only
prevalence-0.2.0/prevalence/R/plot_methods.R |only
prevalence-0.2.0/prevalence/R/plot_methods_coda.R |only
prevalence-0.2.0/prevalence/R/print_methods.R |only
prevalence-0.2.0/prevalence/R/truePrevMulti.R |only
prevalence-0.2.0/prevalence/R/truePrevMultinom.R |only
prevalence-0.2.0/prevalence/man/definition.Rd |only
prevalence-0.3.0/prevalence/DESCRIPTION | 31 +--
prevalence-0.3.0/prevalence/MD5 | 63 +++---
prevalence-0.3.0/prevalence/NAMESPACE | 5
prevalence-0.3.0/prevalence/NEWS |only
prevalence-0.3.0/prevalence/R/betaPERT.R | 14 -
prevalence-0.3.0/prevalence/R/checkBinPrior.R | 2
prevalence-0.3.0/prevalence/R/checkSeSp.R | 109 +++++++---
prevalence-0.3.0/prevalence/R/define-functions.R |only
prevalence-0.3.0/prevalence/R/dist2list.R | 13 -
prevalence-0.3.0/prevalence/R/plot-methods-coda.R |only
prevalence-0.3.0/prevalence/R/plot-methods.R |only
prevalence-0.3.0/prevalence/R/print-methods.R |only
prevalence-0.3.0/prevalence/R/truePrev.R | 13 -
prevalence-0.3.0/prevalence/R/truePrevBinom.R | 6
prevalence-0.3.0/prevalence/R/truePrevMulti-helper.R |only
prevalence-0.3.0/prevalence/R/truePrevMulti-main.R |only
prevalence-0.3.0/prevalence/R/truePrevPools.R | 23 +-
prevalence-0.3.0/prevalence/R/writeSeSp.R | 28 +-
prevalence-0.3.0/prevalence/R/zzz.R | 97 +++++----
prevalence-0.3.0/prevalence/inst/CITATION | 22 +-
prevalence-0.3.0/prevalence/man/betaExpert.Rd | 21 --
prevalence-0.3.0/prevalence/man/betaPERT.Rd | 32 +--
prevalence-0.3.0/prevalence/man/define.Rd |only
prevalence-0.3.0/prevalence/man/prev-class.Rd | 23 --
prevalence-0.3.0/prevalence/man/prevalence-package.Rd | 22 +-
prevalence-0.3.0/prevalence/man/print-methods.Rd | 14 -
prevalence-0.3.0/prevalence/man/show-methods.Rd | 2
prevalence-0.3.0/prevalence/man/truePrev.Rd | 53 +----
prevalence-0.3.0/prevalence/man/truePrevMulti.Rd | 180 +++++-------------
prevalence-0.3.0/prevalence/man/truePrevMulti2.Rd |only
prevalence-0.3.0/prevalence/man/truePrevPools.Rd | 69 ++----
43 files changed, 373 insertions(+), 469 deletions(-)
Title: Compiling the NHL Real Time Scoring System Database for easy use
in R
Diff between nhlscrapr versions 1.5.1 dated 2014-06-10 and 1.8 dated 2014-10-21
Description: Compiling the NHL Real Time Scoring System Database for easy use in R
Author: A.C. Thomas, Samuel L. Ventura
Maintainer: A.C. Thomas
nhlscrapr-1.5.1/nhlscrapr/R/capgeek.R |only
nhlscrapr-1.5.1/nhlscrapr/man/capgeek.Rd |only
nhlscrapr-1.8/nhlscrapr/DESCRIPTION | 8
nhlscrapr-1.8/nhlscrapr/MD5 | 24 -
nhlscrapr-1.8/nhlscrapr/NAMESPACE | 4
nhlscrapr-1.8/nhlscrapr/R/convert-html.R | 28 -
nhlscrapr-1.8/nhlscrapr/R/integrate.R | 421 ++++++++++--------
nhlscrapr-1.8/nhlscrapr/R/manual-name-fixes.R | 35 +
nhlscrapr-1.8/nhlscrapr/R/operations.R | 133 ++++-
nhlscrapr-1.8/nhlscrapr/R/subzone-adjustments.R |only
nhlscrapr-1.8/nhlscrapr/data/date201415.RData |only
nhlscrapr-1.8/nhlscrapr/data/pushpull.RData |only
nhlscrapr-1.8/nhlscrapr/data/zone-adjust-prefab.RData |only
nhlscrapr-1.8/nhlscrapr/man/full.game.database.Rd | 15
nhlscrapr-1.8/nhlscrapr/man/process-games.Rd | 32 -
nhlscrapr-1.8/nhlscrapr/man/quadsarray.Rd | 20
16 files changed, 464 insertions(+), 256 deletions(-)
Title: Analyze Multinomial Processing Tree Models
Diff between MPTinR versions 1.5.1 dated 2014-08-07 and 1.6.3 dated 2014-10-21
Description: MPTinR provides a user-friendly way for the analysis of multinomial processing tree (MPT) models (e.g., Riefer, D. M., and Batchelder, W. H. [1988]. Multinomial modeling and the measurement of cognitive processes. Psychological Review, 95, 318-339) for single and multiple datasets. The main functions perform model fitting and model selection. Model selection can be done using AIC, BIC, or the Fisher Information Approximation (FIA) a measure based on the Minimum Description Length (MDL) framework. The model and restrictions can be specified in external files or within an R script in an intuitive syntax or using the context-free language for MPTs. The 'classical' .EQN file format for model files is also supported. Besides MPTs, MPTinR can fit a wide variety of other cognitive models such as SDT models (see fit.model). MPTinR supports multicore fitting and FIA calculation using the snowfall package. MPTinR can generate data from a model for e.g., simulation or parametric bootstrap and plot predicted versus observed data.
Author: Henrik Singmann [aut, cre],
David Kellen [aut],
Quentin Gronau [aut],
Christian Mueller [ctb],
Akhil S Bhel [ctb]
Maintainer: Henrik Singmann
MPTinR-1.5.1/MPTinR/ChangeLog |only
MPTinR-1.5.1/MPTinR/src/Makevars |only
MPTinR-1.5.1/MPTinR/src/Makevars.win |only
MPTinR-1.6.3/MPTinR/DESCRIPTION | 24 ++++----
MPTinR-1.6.3/MPTinR/MD5 | 45 +++++++--------
MPTinR-1.6.3/MPTinR/NAMESPACE | 1
MPTinR-1.6.3/MPTinR/NEWS | 36 +++++++++++-
MPTinR-1.6.3/MPTinR/R/RcppExports.R |only
MPTinR-1.6.3/MPTinR/R/bmpt.fia.R | 16 ++---
MPTinR-1.6.3/MPTinR/R/fit.model.R | 2
MPTinR-1.6.3/MPTinR/R/fit.mpt.old.R | 8 +-
MPTinR-1.6.3/MPTinR/R/fit.mptinr.R | 8 +-
MPTinR-1.6.3/MPTinR/R/select.mpt.R | 7 +-
MPTinR-1.6.3/MPTinR/man/MPTinR-package.Rd | 10 +--
MPTinR-1.6.3/MPTinR/man/bmpt.fia.Rd | 4 -
MPTinR-1.6.3/MPTinR/man/check.mpt.Rd | 8 +-
MPTinR-1.6.3/MPTinR/man/fit.model.Rd | 8 +-
MPTinR-1.6.3/MPTinR/man/fit.mpt.Rd | 23 +++----
MPTinR-1.6.3/MPTinR/man/fit.mpt.old.Rd | 18 +++---
MPTinR-1.6.3/MPTinR/man/fit.mptinr.Rd | 18 +++---
MPTinR-1.6.3/MPTinR/man/get.mpt.fia.Rd | 12 ++--
MPTinR-1.6.3/MPTinR/man/make.mpt.cf.Rd | 6 +-
MPTinR-1.6.3/MPTinR/man/select.mpt.Rd | 8 +-
MPTinR-1.6.3/MPTinR/src/RcppExports.cpp |only
MPTinR-1.6.3/MPTinR/src/determinant.cpp | 85 ++++++++--------------------
MPTinR-1.6.3/MPTinR/src/determinant_c.cpp | 88 ++++++++----------------------
26 files changed, 202 insertions(+), 233 deletions(-)
Title: Raw Accelerometer Data Analysis
Diff between GGIR versions 1.0-6 dated 2014-09-01 and 1.1-3 dated 2014-10-21
Description: A tool to process and analyse data collected
with wearable raw acceleration sensors. The package has been developed and
tested for binary data from GENEActiv and GENEA devices and .csv-export data
from Actigraph devices. These devices are currently widely used in research on
human daily physical activity
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Severine Sabia [ctb]
Maintainer: Vincent T van Hees
DESCRIPTION | 29 ++--
MD5 | 37 +++--
NAMESPACE | 3
R/g.analyse.R | 141 +++++++++++++++----
R/g.calibrate.R | 99 ++-----------
R/g.convert.day.names.R |only
R/g.detecmidnight.R | 33 ++--
R/g.dotorcomma.R | 2
R/g.getmeta.R | 248 +++++++++++++++++++++-------------
R/g.impute.R | 53 +++++++
R/g.inspectfile.R | 347 ++++++++++++++++++++++++------------------------
R/g.metric.R | 291 +++++++++++++++++++++-------------------
R/g.part1.R |only
R/g.part2.R |only
R/g.shell.GGIR.R |only
inst/NEWS.Rd | 14 +
man/GGIR-package.Rd | 74 +++++++---
man/g.calibrate.Rd | 7
man/g.getmeta.Rd | 36 ++++
man/g.impute.Rd | 10 +
man/g.part1.Rd |only
man/g.part2.Rd |only
man/g.shell.GGIR.Rd |only
23 files changed, 834 insertions(+), 590 deletions(-)
Title: Biological Structure Analysis
Diff between bio3d versions 2.1-1 dated 2014-10-15 and 2.1-2 dated 2014-10-21
Description: Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.
Author: Barry Grant, Xin-Qiu Yao, Lars Skjaerven, Julien Ide
Maintainer: Barry Grant
DESCRIPTION | 19 +---
MD5 | 144 ++++++++++++++++++-------------------
R/read.dcd.R | 7 +
inst/examples/1dpx.pdb |only
inst/examples/1hel.pdb |only
man/aa.mass.Rd | 3
man/angle.xyz.Rd | 2
man/atom.select.Rd | 10 +-
man/atom2ele.Rd | 2
man/atom2mass.Rd | 3
man/bio3d.package.Rd | 53 +++++++------
man/bwr.colors.Rd | 2
man/chain.pdb.Rd | 2
man/cna.Rd | 2
man/com.Rd | 3
man/combine.sel.Rd | 12 +--
man/community.tree.Rd | 3
man/convert.pdb.Rd | 3
man/dccm.nma.Rd | 2
man/deformation.nma.Rd | 4 -
man/dm.Rd | 2
man/fluct.nma.Rd | 2
man/get.pdb.Rd | 3
man/identify.cna.Rd | 17 ----
man/inner.prod.Rd | 2
man/is.pdb.Rd | 2
man/is.select.Rd | 6 -
man/is.xyz.Rd | 2
man/load.enmff.Rd | 4 -
man/mktrj.nma.Rd | 2
man/motif.find.Rd | 2
man/nma.pdb.Rd | 2
man/normalize.vector.Rd | 2
man/orient.pdb.Rd | 2
man/pca.xyz.Rd | 5 -
man/pdb.annotate.Rd | 4 -
man/plot.bio3d.Rd | 3
man/plot.cna.Rd | 3
man/plot.dmat.Rd | 4 -
man/plot.nma.Rd | 2
man/plot.rmsip.Rd | 2
man/print.xyz.Rd | 2
man/read.mol2.Rd | 2
man/read.pdb.Rd | 4 -
man/read.pdcBD.Rd | 3
man/read.pqr.Rd | 3
man/rgyr.Rd | 2
man/sdENM.Rd | 2
man/sip.Rd | 2
man/sse.bridges.Rd | 4 -
man/torsion.pdb.Rd | 2
man/uniprot.Rd | 2
man/view.cna.Rd | 19 ----
man/view.dccm.Rd | 2
man/view.modes.Rd | 2
man/write.fasta.Rd | 3
man/write.pdb.Rd | 3
man/write.pqr.Rd | 2
tests/testthat/test-aa2mass.R | 3
tests/testthat/test-atom2mass.R | 31 +++----
tests/testthat/test-cmap.R | 10 +-
tests/testthat/test-core.find.R | 31 ++++---
tests/testthat/test-dccm.R | 13 +--
tests/testthat/test-deformation.R | 32 ++++----
tests/testthat/test-fitting.R | 62 +++++++++------
tests/testthat/test-get.pdb.R | 4 +
tests/testthat/test-nma.R | 22 -----
tests/testthat/test-nma.pdbs.R | 109 ++++++++++------------------
tests/testthat/test-overlap.R | 8 +-
tests/testthat/test-pca.R | 34 +++-----
tests/testthat/test-pdb.annotate.R | 1
tests/testthat/test-pdbsplit.R | 3
tests/testthat/test-read.pdb.R | 46 ++++++++---
tests/testthat/test-rmsd.R | 50 +++++++-----
74 files changed, 451 insertions(+), 416 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-23 2.3
2013-03-15 2.0
2013-03-05 1.9
2013-02-01 1.8
2013-01-20 1.7
2013-01-02 1.6
2012-10-25 1.5
2012-09-07 1.4
2012-08-29 1.3
2012-08-22 1.0
Title: Secondary Trait Association analysis for Rare variants via
SEQuence data
Diff between STARSEQ versions 1.02 dated 2012-08-24 and 1.2.1 dated 2014-10-21
Description: STARSEQ is an R-package for detecting associations with
rare variants using selected samples in sequence-based
association studies. It corrects for the bias in the secondary
trait distribution induced by selective sampling on the primary
trait. The corrected secondary trait can be analyzed by
standard rare variant tests. In the STARSEQ package, several
popular rare variant tests were implemented, which include 1.)
combined multivariate and collapsing 2.) weighted sum
statistics, 3.) kernel based adaptive cluster, 4.) variable
threshold test 5.) sequence kernel association test.
Author: Dajiang Liu
Maintainer: Dajiang Liu
DESCRIPTION | 9 +++++----
MD5 | 2 +-
2 files changed, 6 insertions(+), 5 deletions(-)
Title: Parallel programming tools for Rcpp
Diff between RcppParallel versions 4.2.5.3 dated 2014-08-17 and 4.3.3 dated 2014-10-21
Description: High level functions for doing parallel programming with Rcpp.
For example, the parallelFor function can be used to convert the work of
a standard serial "for" loop into a parallel one and the parallelReduce
function can be used for accumulating aggregate or other values.
Author: JJ Allaire; Romain Francois; Intel, Inc.; Marcus Geelnard
Maintainer: JJ Allaire
RcppParallel-4.2.5.3/src/tbb/build/vs2008 |only
RcppParallel-4.2.5.3/src/tbb/src/test/test_concurrent_unordered.cpp |only
RcppParallel-4.3.3/DESCRIPTION | 8
RcppParallel-4.3.3/MD5 | 1147 ++++----
RcppParallel-4.3.3/NEWS | 6
RcppParallel-4.3.3/inst/include/tbb/aggregator.h | 38
RcppParallel-4.3.3/inst/include/tbb/aligned_space.h | 38
RcppParallel-4.3.3/inst/include/tbb/atomic.h | 40
RcppParallel-4.3.3/inst/include/tbb/blocked_range.h | 46
RcppParallel-4.3.3/inst/include/tbb/blocked_range2d.h | 42
RcppParallel-4.3.3/inst/include/tbb/blocked_range3d.h | 42
RcppParallel-4.3.3/inst/include/tbb/cache_aligned_allocator.h | 47
RcppParallel-4.3.3/inst/include/tbb/combinable.h | 38
RcppParallel-4.3.3/inst/include/tbb/compat/condition_variable | 38
RcppParallel-4.3.3/inst/include/tbb/compat/ppl.h | 38
RcppParallel-4.3.3/inst/include/tbb/compat/thread | 38
RcppParallel-4.3.3/inst/include/tbb/compat/tuple | 38
RcppParallel-4.3.3/inst/include/tbb/concurrent_hash_map.h | 203 -
RcppParallel-4.3.3/inst/include/tbb/concurrent_lru_cache.h | 38
RcppParallel-4.3.3/inst/include/tbb/concurrent_priority_queue.h | 175 -
RcppParallel-4.3.3/inst/include/tbb/concurrent_queue.h | 268 +
RcppParallel-4.3.3/inst/include/tbb/concurrent_unordered_map.h | 166 -
RcppParallel-4.3.3/inst/include/tbb/concurrent_unordered_set.h | 193 -
RcppParallel-4.3.3/inst/include/tbb/concurrent_vector.h | 263 +
RcppParallel-4.3.3/inst/include/tbb/critical_section.h | 38
RcppParallel-4.3.3/inst/include/tbb/enumerable_thread_specific.h | 46
RcppParallel-4.3.3/inst/include/tbb/flow_graph.h | 1088 +++++--
RcppParallel-4.3.3/inst/include/tbb/internal/_aggregator_impl.h | 38
RcppParallel-4.3.3/inst/include/tbb/internal/_concurrent_queue_impl.h | 176 -
RcppParallel-4.3.3/inst/include/tbb/internal/_concurrent_unordered_impl.h | 185 +
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_impl.h | 480 ++-
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_indexer_impl.h | 154 -
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_item_buffer_impl.h | 244 +
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_join_impl.h | 343 +-
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_node_impl.h | 200 +
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_tagged_buffer_impl.h | 259 +
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_trace_impl.h | 38
RcppParallel-4.3.3/inst/include/tbb/internal/_flow_graph_types_impl.h | 81
RcppParallel-4.3.3/inst/include/tbb/internal/_mutex_padding.h | 42
RcppParallel-4.3.3/inst/include/tbb/internal/_range_iterator.h |only
RcppParallel-4.3.3/inst/include/tbb/internal/_tbb_strings.h | 38
RcppParallel-4.3.3/inst/include/tbb/internal/_tbb_windef.h | 38
RcppParallel-4.3.3/inst/include/tbb/internal/_x86_eliding_mutex_impl.h | 41
RcppParallel-4.3.3/inst/include/tbb/internal/_x86_rtm_rw_mutex_impl.h | 102
RcppParallel-4.3.3/inst/include/tbb/machine/gcc_armv7.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/gcc_generic.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/gcc_ia32_common.h | 45
RcppParallel-4.3.3/inst/include/tbb/machine/gcc_itsx.h | 53
RcppParallel-4.3.3/inst/include/tbb/machine/ibm_aix51.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/icc_generic.h | 49
RcppParallel-4.3.3/inst/include/tbb/machine/linux_common.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/linux_ia32.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/linux_ia64.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/linux_intel64.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/mac_ppc.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/macos_common.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/mic_common.h | 42
RcppParallel-4.3.3/inst/include/tbb/machine/msvc_armv7.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/msvc_ia32_common.h | 57
RcppParallel-4.3.3/inst/include/tbb/machine/sunos_sparc.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/windows_api.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/windows_ia32.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/windows_intel64.h | 38
RcppParallel-4.3.3/inst/include/tbb/machine/xbox360_ppc.h | 38
RcppParallel-4.3.3/inst/include/tbb/memory_pool.h | 47
RcppParallel-4.3.3/inst/include/tbb/mutex.h | 44
RcppParallel-4.3.3/inst/include/tbb/null_mutex.h | 47
RcppParallel-4.3.3/inst/include/tbb/null_rw_mutex.h | 47
RcppParallel-4.3.3/inst/include/tbb/parallel_do.h | 60
RcppParallel-4.3.3/inst/include/tbb/parallel_for.h | 38
RcppParallel-4.3.3/inst/include/tbb/parallel_for_each.h | 64
RcppParallel-4.3.3/inst/include/tbb/parallel_invoke.h | 147 -
RcppParallel-4.3.3/inst/include/tbb/parallel_reduce.h | 38
RcppParallel-4.3.3/inst/include/tbb/parallel_scan.h | 38
RcppParallel-4.3.3/inst/include/tbb/parallel_sort.h | 67
RcppParallel-4.3.3/inst/include/tbb/parallel_while.h | 38
RcppParallel-4.3.3/inst/include/tbb/partitioner.h | 38
RcppParallel-4.3.3/inst/include/tbb/pipeline.h | 59
RcppParallel-4.3.3/inst/include/tbb/queuing_mutex.h | 40
RcppParallel-4.3.3/inst/include/tbb/queuing_rw_mutex.h | 40
RcppParallel-4.3.3/inst/include/tbb/reader_writer_lock.h | 38
RcppParallel-4.3.3/inst/include/tbb/recursive_mutex.h | 44
RcppParallel-4.3.3/inst/include/tbb/runtime_loader.h | 38
RcppParallel-4.3.3/inst/include/tbb/scalable_allocator.h | 47
RcppParallel-4.3.3/inst/include/tbb/spin_mutex.h | 40
RcppParallel-4.3.3/inst/include/tbb/spin_rw_mutex.h | 79
RcppParallel-4.3.3/inst/include/tbb/task.h | 60
RcppParallel-4.3.3/inst/include/tbb/task_arena.h | 38
RcppParallel-4.3.3/inst/include/tbb/task_group.h | 53
RcppParallel-4.3.3/inst/include/tbb/task_scheduler_init.h | 38
RcppParallel-4.3.3/inst/include/tbb/task_scheduler_observer.h | 38
RcppParallel-4.3.3/inst/include/tbb/tbb.h | 48
RcppParallel-4.3.3/inst/include/tbb/tbb_allocator.h | 47
RcppParallel-4.3.3/inst/include/tbb/tbb_config.h | 205 -
RcppParallel-4.3.3/inst/include/tbb/tbb_exception.h | 38
RcppParallel-4.3.3/inst/include/tbb/tbb_machine.h | 38
RcppParallel-4.3.3/inst/include/tbb/tbb_profiling.h | 38
RcppParallel-4.3.3/inst/include/tbb/tbb_stddef.h | 139
RcppParallel-4.3.3/inst/include/tbb/tbb_thread.h | 130
RcppParallel-4.3.3/inst/include/tbb/tbbmalloc_proxy.h | 38
RcppParallel-4.3.3/inst/include/tbb/tick_count.h | 38
RcppParallel-4.3.3/src/Makevars | 6
RcppParallel-4.3.3/src/tbb/CHANGES | 80
RcppParallel-4.3.3/src/tbb/Makefile | 36
RcppParallel-4.3.3/src/tbb/build/AIX.gcc.inc | 38
RcppParallel-4.3.3/src/tbb/build/AIX.inc | 36
RcppParallel-4.3.3/src/tbb/build/FreeBSD.gcc.inc | 40
RcppParallel-4.3.3/src/tbb/build/FreeBSD.inc | 36
RcppParallel-4.3.3/src/tbb/build/Makefile.rml | 40
RcppParallel-4.3.3/src/tbb/build/Makefile.tbb | 40
RcppParallel-4.3.3/src/tbb/build/Makefile.tbbmalloc | 64
RcppParallel-4.3.3/src/tbb/build/Makefile.tbbproxy | 36
RcppParallel-4.3.3/src/tbb/build/Makefile.test | 58
RcppParallel-4.3.3/src/tbb/build/SunOS.gcc.inc | 40
RcppParallel-4.3.3/src/tbb/build/SunOS.inc | 36
RcppParallel-4.3.3/src/tbb/build/SunOS.suncc.inc | 38
RcppParallel-4.3.3/src/tbb/build/android.gcc.inc | 38
RcppParallel-4.3.3/src/tbb/build/android.inc | 38
RcppParallel-4.3.3/src/tbb/build/android.linux.inc | 36
RcppParallel-4.3.3/src/tbb/build/android.linux.launcher.sh | 38
RcppParallel-4.3.3/src/tbb/build/android.macos.inc | 36
RcppParallel-4.3.3/src/tbb/build/android.windows.inc | 36
RcppParallel-4.3.3/src/tbb/build/big_iron.inc | 36
RcppParallel-4.3.3/src/tbb/build/common.inc | 36
RcppParallel-4.3.3/src/tbb/build/common_rules.inc | 36
RcppParallel-4.3.3/src/tbb/build/detect.js | 36
RcppParallel-4.3.3/src/tbb/build/generate_tbbvars.bat | 38
RcppParallel-4.3.3/src/tbb/build/generate_tbbvars.sh | 38
RcppParallel-4.3.3/src/tbb/build/linux.clang.inc | 41
RcppParallel-4.3.3/src/tbb/build/linux.gcc.inc | 46
RcppParallel-4.3.3/src/tbb/build/linux.icc.inc | 36
RcppParallel-4.3.3/src/tbb/build/linux.inc | 36
RcppParallel-4.3.3/src/tbb/build/linux.xl.inc | 36
RcppParallel-4.3.3/src/tbb/build/macos.clang.inc | 49
RcppParallel-4.3.3/src/tbb/build/macos.gcc.inc | 40
RcppParallel-4.3.3/src/tbb/build/macos.icc.inc | 38
RcppParallel-4.3.3/src/tbb/build/macos.inc | 40
RcppParallel-4.3.3/src/tbb/build/mic.icc.inc | 36
RcppParallel-4.3.3/src/tbb/build/mic.linux.inc | 36
RcppParallel-4.3.3/src/tbb/build/mic.linux.launcher.sh | 38
RcppParallel-4.3.3/src/tbb/build/mic.offload.inc | 36
RcppParallel-4.3.3/src/tbb/build/test_launcher.bat | 38
RcppParallel-4.3.3/src/tbb/build/test_launcher.sh | 55
RcppParallel-4.3.3/src/tbb/build/version_info_aix.sh | 38
RcppParallel-4.3.3/src/tbb/build/version_info_android.sh | 38
RcppParallel-4.3.3/src/tbb/build/version_info_linux.sh | 38
RcppParallel-4.3.3/src/tbb/build/version_info_macos.sh | 38
RcppParallel-4.3.3/src/tbb/build/version_info_sunos.sh | 38
RcppParallel-4.3.3/src/tbb/build/version_info_windows.js | 36
RcppParallel-4.3.3/src/tbb/build/vs2010/tbb.vcxproj | 1423 +++++-----
RcppParallel-4.3.3/src/tbb/build/vs2010/tbbmalloc.vcxproj | 1168 ++++----
RcppParallel-4.3.3/src/tbb/build/vs2010/tbbmalloc_proxy.vcxproj | 842 ++---
RcppParallel-4.3.3/src/tbb/build/windows.cl.inc | 36
RcppParallel-4.3.3/src/tbb/build/windows.gcc.inc | 47
RcppParallel-4.3.3/src/tbb/build/windows.icl.inc | 36
RcppParallel-4.3.3/src/tbb/build/windows.inc | 36
RcppParallel-4.3.3/src/tbb/build/xbox360.cl.inc | 36
RcppParallel-4.3.3/src/tbb/build/xbox360.inc | 36
RcppParallel-4.3.3/src/tbb/include/serial/tbb/parallel_for.h | 38
RcppParallel-4.3.3/src/tbb/include/serial/tbb/tbb_annotate.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/aggregator.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/aligned_space.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/atomic.h | 40
RcppParallel-4.3.3/src/tbb/include/tbb/blocked_range.h | 46
RcppParallel-4.3.3/src/tbb/include/tbb/blocked_range2d.h | 42
RcppParallel-4.3.3/src/tbb/include/tbb/blocked_range3d.h | 42
RcppParallel-4.3.3/src/tbb/include/tbb/cache_aligned_allocator.h | 47
RcppParallel-4.3.3/src/tbb/include/tbb/combinable.h | 38
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RcppParallel-4.3.3/src/tbb/include/tbb/compat/ppl.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/compat/thread | 38
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RcppParallel-4.3.3/src/tbb/include/tbb/concurrent_lru_cache.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/concurrent_priority_queue.h | 175 -
RcppParallel-4.3.3/src/tbb/include/tbb/concurrent_queue.h | 268 +
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RcppParallel-4.3.3/src/tbb/include/tbb/concurrent_unordered_set.h | 193 -
RcppParallel-4.3.3/src/tbb/include/tbb/concurrent_vector.h | 263 +
RcppParallel-4.3.3/src/tbb/include/tbb/critical_section.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/enumerable_thread_specific.h | 46
RcppParallel-4.3.3/src/tbb/include/tbb/flow_graph.h | 1088 +++++--
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_aggregator_impl.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_concurrent_queue_impl.h | 176 -
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_concurrent_unordered_impl.h | 185 +
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_flow_graph_impl.h | 480 ++-
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RcppParallel-4.3.3/src/tbb/include/tbb/internal/_flow_graph_join_impl.h | 343 +-
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_flow_graph_node_impl.h | 200 +
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_flow_graph_tagged_buffer_impl.h | 259 +
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RcppParallel-4.3.3/src/tbb/include/tbb/internal/_flow_graph_types_impl.h | 81
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_mutex_padding.h | 42
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RcppParallel-4.3.3/src/tbb/include/tbb/internal/_tbb_strings.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_tbb_windef.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_x86_eliding_mutex_impl.h | 41
RcppParallel-4.3.3/src/tbb/include/tbb/internal/_x86_rtm_rw_mutex_impl.h | 102
RcppParallel-4.3.3/src/tbb/include/tbb/machine/gcc_armv7.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/gcc_generic.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/gcc_ia32_common.h | 45
RcppParallel-4.3.3/src/tbb/include/tbb/machine/gcc_itsx.h | 53
RcppParallel-4.3.3/src/tbb/include/tbb/machine/ibm_aix51.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/icc_generic.h | 49
RcppParallel-4.3.3/src/tbb/include/tbb/machine/linux_common.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/linux_ia32.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/linux_ia64.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/linux_intel64.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/mac_ppc.h | 38
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RcppParallel-4.3.3/src/tbb/include/tbb/machine/mic_common.h | 42
RcppParallel-4.3.3/src/tbb/include/tbb/machine/msvc_armv7.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/msvc_ia32_common.h | 57
RcppParallel-4.3.3/src/tbb/include/tbb/machine/sunos_sparc.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/windows_api.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/windows_ia32.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/windows_intel64.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/machine/xbox360_ppc.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/memory_pool.h | 47
RcppParallel-4.3.3/src/tbb/include/tbb/mutex.h | 44
RcppParallel-4.3.3/src/tbb/include/tbb/null_mutex.h | 47
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RcppParallel-4.3.3/src/tbb/include/tbb/parallel_reduce.h | 38
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RcppParallel-4.3.3/src/tbb/include/tbb/partitioner.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/pipeline.h | 59
RcppParallel-4.3.3/src/tbb/include/tbb/queuing_mutex.h | 40
RcppParallel-4.3.3/src/tbb/include/tbb/queuing_rw_mutex.h | 40
RcppParallel-4.3.3/src/tbb/include/tbb/reader_writer_lock.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/recursive_mutex.h | 44
RcppParallel-4.3.3/src/tbb/include/tbb/runtime_loader.h | 38
RcppParallel-4.3.3/src/tbb/include/tbb/scalable_allocator.h | 47
RcppParallel-4.3.3/src/tbb/include/tbb/spin_mutex.h | 40
RcppParallel-4.3.3/src/tbb/include/tbb/spin_rw_mutex.h | 79
RcppParallel-4.3.3/src/tbb/include/tbb/task.h | 60
RcppParallel-4.3.3/src/tbb/include/tbb/task_arena.h | 38
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RcppParallel-4.3.3/src/tbb/include/tbb/task_scheduler_observer.h | 38
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RcppParallel-4.3.3/src/tbb/include/tbb/tbb_allocator.h | 47
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RcppParallel-4.3.3/src/tbb/include/tbb/tbb_stddef.h | 139
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RcppParallel-4.3.3/src/tbb/include/tbb/tick_count.h | 38
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RcppParallel-4.3.3/src/tbb/src/perf/coarse_grained_raii_lru_cache.h | 38
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RcppParallel-4.3.3/src/tbb/src/perf/cpq_throughput_test.cpp | 38
RcppParallel-4.3.3/src/tbb/src/perf/fibonacci_impl_tbb.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/perf/statistics_xml.h | 38
RcppParallel-4.3.3/src/tbb/src/perf/time_fibonacci_cutoff.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/perf/time_hash_map.cpp | 38
RcppParallel-4.3.3/src/tbb/src/perf/time_hash_map_fill.cpp | 38
RcppParallel-4.3.3/src/tbb/src/perf/time_locked_work.cpp | 38
RcppParallel-4.3.3/src/tbb/src/perf/time_lru_cache_throughput.cpp | 38
RcppParallel-4.3.3/src/tbb/src/perf/time_sandbox.h | 38
RcppParallel-4.3.3/src/tbb/src/perf/time_vector.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/rml/client/omp_dynamic_link.h | 38
RcppParallel-4.3.3/src/tbb/src/rml/client/rml_factory.h | 38
RcppParallel-4.3.3/src/tbb/src/rml/client/rml_omp.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/client/rml_tbb.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/rml/perfor/omp_nested.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/perfor/omp_simple.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/perfor/tbb_multi_omp.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/perfor/tbb_simple.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/perfor/thread_level.h | 38
RcppParallel-4.3.3/src/tbb/src/rml/server/irml.rc | 38
RcppParallel-4.3.3/src/tbb/src/rml/server/job_automaton.h | 38
RcppParallel-4.3.3/src/tbb/src/rml/server/lin-rml-export.def | 38
RcppParallel-4.3.3/src/tbb/src/rml/server/rml_server.cpp | 42
RcppParallel-4.3.3/src/tbb/src/rml/server/thread_monitor.h | 38
RcppParallel-4.3.3/src/tbb/src/rml/server/wait_counter.h | 38
RcppParallel-4.3.3/src/tbb/src/rml/server/win32-rml-export.def | 36
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RcppParallel-4.3.3/src/tbb/src/rml/test/rml_omp_stub.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/test/test_job_automaton.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/test/test_rml_mixed.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/test/test_rml_omp.cpp | 38
RcppParallel-4.3.3/src/tbb/src/rml/test/test_rml_omp_c_linkage.c | 38
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RcppParallel-4.3.3/src/tbb/src/rml/test/test_server.h | 38
RcppParallel-4.3.3/src/tbb/src/rml/test/test_thread_monitor.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/tbb/cache_aligned_allocator.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/tbb/concurrent_hash_map.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/concurrent_monitor.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/tbb/concurrent_queue.cpp | 120
RcppParallel-4.3.3/src/tbb/src/tbb/concurrent_vector.cpp | 50
RcppParallel-4.3.3/src/tbb/src/tbb/condition_variable.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/critical_section.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/custom_scheduler.h | 47
RcppParallel-4.3.3/src/tbb/src/tbb/dynamic_link.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/dynamic_link.h | 38
RcppParallel-4.3.3/src/tbb/src/tbb/governor.cpp | 40
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RcppParallel-4.3.3/src/tbb/src/tbb/pipeline.cpp | 64
RcppParallel-4.3.3/src/tbb/src/tbb/private_server.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/queuing_mutex.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/queuing_rw_mutex.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/reader_writer_lock.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/recursive_mutex.cpp | 53
RcppParallel-4.3.3/src/tbb/src/tbb/scheduler.cpp | 50
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RcppParallel-4.3.3/src/tbb/src/tbb/scheduler_common.h | 84
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RcppParallel-4.3.3/src/tbb/src/tbb/spin_mutex.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/spin_rw_mutex.cpp | 38
RcppParallel-4.3.3/src/tbb/src/tbb/task.cpp | 44
RcppParallel-4.3.3/src/tbb/src/tbb/task_group_context.cpp | 58
RcppParallel-4.3.3/src/tbb/src/tbb/task_stream.h | 38
RcppParallel-4.3.3/src/tbb/src/tbb/tbb_assert_impl.h | 38
RcppParallel-4.3.3/src/tbb/src/tbb/tbb_main.cpp | 40
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RcppParallel-4.3.3/src/tbb/src/tbb/tbb_resource.rc | 38
RcppParallel-4.3.3/src/tbb/src/tbb/tbb_statistics.cpp | 38
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RcppParallel-4.3.3/src/tbb/src/tbb/tbb_version.h | 38
RcppParallel-4.3.3/src/tbb/src/tbb/tls.h | 38
RcppParallel-4.3.3/src/tbb/src/tbb/tools_api/disable_warnings.h | 38
RcppParallel-4.3.3/src/tbb/src/tbb/tools_api/internal/ittnotify.h | 659 ----
RcppParallel-4.3.3/src/tbb/src/tbb/tools_api/ittnotify.h | 560 +++
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RcppParallel-4.3.3/src/tbb/src/tbb/tools_api/ittnotify_types.h | 42
RcppParallel-4.3.3/src/tbb/src/tbb/tools_api/legacy/ittnotify.h | 74
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RcppParallel-4.3.3/src/tbb/src/tbb/win32-tbb-export.lst | 55
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RcppParallel-4.3.3/src/tbb/src/tbb/win64-gcc-tbb-export.lst | 51
RcppParallel-4.3.3/src/tbb/src/tbb/win64-tbb-export.def | 36
RcppParallel-4.3.3/src/tbb/src/tbb/win64-tbb-export.lst | 55
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RcppParallel-4.3.3/src/tbb/src/tbb/x86_rtm_rw_mutex.cpp | 91
RcppParallel-4.3.3/src/tbb/src/tbb/xbox360-tbb-export.def | 36
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RcppParallel-4.3.3/src/tbb/src/tbbmalloc/MapMemory.h | 38
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RcppParallel-4.3.3/src/tbb/src/tbbmalloc/mac32-tbbmalloc-export.def | 44
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/mac64-tbbmalloc-export.def | 44
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/proxy.cpp | 308 +-
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/proxy.h | 67
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/proxy_overload_osx.h |only
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/shared_utils.h | 38
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/tbb_function_replacement.cpp | 48
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/tbb_function_replacement.h | 38
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/tbbmalloc.cpp | 142
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/tbbmalloc.rc | 38
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/tbbmalloc_internal.h | 179 -
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/tbbmalloc_internal_api.h | 40
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/win32-gcc-tbbmalloc-export.def | 48
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/win32-tbbmalloc-export.def | 46
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/win64-gcc-tbbmalloc-export.def | 48
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/win64-tbbmalloc-export.def | 46
RcppParallel-4.3.3/src/tbb/src/tbbmalloc/xbox360-tbbmalloc-export.def | 46
RcppParallel-4.3.3/src/tbb/src/tbbproxy/tbbproxy-windows.asm | 36
RcppParallel-4.3.3/src/tbb/src/tbbproxy/tbbproxy.cpp | 42
RcppParallel-4.3.3/src/tbb/src/test/harness.h | 62
RcppParallel-4.3.3/src/tbb/src/test/harness_allocator.h | 397 ++
RcppParallel-4.3.3/src/tbb/src/test/harness_assert.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_bad_expr.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_barrier.h | 47
RcppParallel-4.3.3/src/tbb/src/test/harness_checktype.h | 39
RcppParallel-4.3.3/src/tbb/src/test/harness_concurrency.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_concurrency_tracker.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_cpu.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_defs.h | 80
RcppParallel-4.3.3/src/tbb/src/test/harness_dynamic_libs.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_eh.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_fp.h |only
RcppParallel-4.3.3/src/tbb/src/test/harness_graph.h | 585 +++-
RcppParallel-4.3.3/src/tbb/src/test/harness_inject_scheduler.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_iterator.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_m128.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_memory.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_mic.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_report.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_runtime_loader.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_task.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_tbb_independence.h | 38
RcppParallel-4.3.3/src/tbb/src/test/harness_test_cases_framework.h | 39
RcppParallel-4.3.3/src/tbb/src/test/harness_tsx.h | 63
RcppParallel-4.3.3/src/tbb/src/test/test_ScalableAllocator.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_ScalableAllocator_STL.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_aggregator.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_aligned_space.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_allocator.h | 38
RcppParallel-4.3.3/src/tbb/src/test/test_allocator_STL.h | 74
RcppParallel-4.3.3/src/tbb/src/test/test_assembly.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_atomic.cpp | 165 -
RcppParallel-4.3.3/src/tbb/src/test/test_blocked_range.cpp | 46
RcppParallel-4.3.3/src/tbb/src/test/test_blocked_range2d.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_blocked_range3d.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_broadcast_node.cpp | 208 +
RcppParallel-4.3.3/src/tbb/src/test/test_buffer_node.cpp | 62
RcppParallel-4.3.3/src/tbb/src/test/test_cache_aligned_allocator.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_cache_aligned_allocator_STL.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_cilk_common.h | 38
RcppParallel-4.3.3/src/tbb/src/test/test_cilk_dynamic_load.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_cilk_interop.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_combinable.cpp | 39
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_hash_map.cpp | 489 +++
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_lru_cache.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_monitor.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_priority_queue.cpp | 622 +++-
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_queue.cpp | 803 ++++-
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_queue.h | 38
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_queue_whitebox.cpp |only
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_unordered_common.h |only
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_unordered_map.cpp |only
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_unordered_set.cpp |only
RcppParallel-4.3.3/src/tbb/src/test/test_concurrent_vector.cpp | 1143 +++++---
RcppParallel-4.3.3/src/tbb/src/test/test_condition_variable.h | 38
RcppParallel-4.3.3/src/tbb/src/test/test_container_move_support.h |only
RcppParallel-4.3.3/src/tbb/src/test/test_continue_node.cpp | 168 +
RcppParallel-4.3.3/src/tbb/src/test/test_critical_section.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_dynamic_link.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_eh_algorithms.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_eh_flow_graph.cpp | 49
RcppParallel-4.3.3/src/tbb/src/test/test_eh_tasks.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_enumerable_thread_specific.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_examples_common_utility.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_fast_random.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_flow_graph.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_flow_graph_whitebox.cpp |only
RcppParallel-4.3.3/src/tbb/src/test/test_fp.cpp | 174 -
RcppParallel-4.3.3/src/tbb/src/test/test_function_node.cpp | 178 +
RcppParallel-4.3.3/src/tbb/src/test/test_halt.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_handle_perror.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_hw_concurrency.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_indexer_node.cpp | 376 ++
RcppParallel-4.3.3/src/tbb/src/test/test_initializer_list.h | 105
RcppParallel-4.3.3/src/tbb/src/test/test_inits_loop.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_intrusive_list.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_ittnotify.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_join_node.cpp | 663 +++-
RcppParallel-4.3.3/src/tbb/src/test/test_lambda.cpp | 56
RcppParallel-4.3.3/src/tbb/src/test/test_limiter_node.cpp | 198 +
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_atexit.cpp | 185 -
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_compliance.cpp | 44
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_init_shutdown.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_lib_unload.cpp | 58
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_overload.cpp | 150 -
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_pools.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_pure_c.c | 38
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_regression.cpp | 76
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_used_by_lib.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_malloc_whitebox.cpp | 48
RcppParallel-4.3.3/src/tbb/src/test/test_model_plugin.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_multifunction_node.cpp | 243 +
RcppParallel-4.3.3/src/tbb/src/test/test_mutex.cpp | 77
RcppParallel-4.3.3/src/tbb/src/test/test_mutex_native_threads.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_openmp.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_overwrite_node.cpp | 52
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_do.cpp | 93
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_for.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_for_each.cpp | 96
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_for_vectorization.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_invoke.cpp | 42
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_pipeline.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_reduce.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_scan.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_sort.cpp | 92
RcppParallel-4.3.3/src/tbb/src/test/test_parallel_while.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_partitioner.h | 38
RcppParallel-4.3.3/src/tbb/src/test/test_partitioner_whitebox.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_pipeline.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_pipeline_with_tbf.cpp | 39
RcppParallel-4.3.3/src/tbb/src/test/test_priority_queue_node.cpp | 49
RcppParallel-4.3.3/src/tbb/src/test/test_queue_node.cpp | 360 +-
RcppParallel-4.3.3/src/tbb/src/test/test_range_based_for.h | 44
RcppParallel-4.3.3/src/tbb/src/test/test_reader_writer_lock.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_runtime_loader.cpp | 39
RcppParallel-4.3.3/src/tbb/src/test/test_rwm_upgrade_downgrade.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_semaphore.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_sequencer_node.cpp | 46
RcppParallel-4.3.3/src/tbb/src/test/test_source_node.cpp | 213 +
RcppParallel-4.3.3/src/tbb/src/test/test_split_node.cpp | 43
RcppParallel-4.3.3/src/tbb/src/test/test_static_assert.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_std_thread.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_tagged_msg.cpp | 45
RcppParallel-4.3.3/src/tbb/src/test/test_task.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_arena.cpp | 236 +
RcppParallel-4.3.3/src/tbb/src/test/test_task_assertions.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_auto_init.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_enqueue.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_group.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_leaks.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_priority.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_scheduler_init.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_task_scheduler_observer.cpp | 39
RcppParallel-4.3.3/src/tbb/src/test/test_task_steal_limit.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_tbb_condition_variable.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_tbb_fork.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_tbb_header.cpp | 92
RcppParallel-4.3.3/src/tbb/src/test/test_tbb_thread.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_tbb_version.cpp | 42
RcppParallel-4.3.3/src/tbb/src/test/test_thread.h | 87
RcppParallel-4.3.3/src/tbb/src/test/test_tick_count.cpp | 67
RcppParallel-4.3.3/src/tbb/src/test/test_tuple.cpp | 38
RcppParallel-4.3.3/src/tbb/src/test/test_write_once_node.cpp | 41
RcppParallel-4.3.3/src/tbb/src/test/test_yield.cpp | 38
578 files changed, 25737 insertions(+), 20735 deletions(-)
Title: Optimal stratification of sampling frames for multipurpose
sampling surveys
Diff between SamplingStrata versions 1.0-2 dated 2014-03-03 and 1.0-3 dated 2014-10-21
More information about SamplingStrata at CRAN
Description: In the field of stratified sampling design, this package
offers an approach for the determination of the best
stratification of a sampling frame, the one that ensures the
minimum sample cost under the condition to satisfy precision
constraints in a multivariate and multidomain case. This
approach is based on the use of the genetic algorithm: each
solution (i.e. a particular partition in strata of the sampling
frame) is considered as an individual in a population; the
fitness of all individuals is evaluated applying the
Bethel-Chromy algorithm to calculate the sampling size
satisfying precision constraints on the target estimates.
Functions in the package allows to: (a) analyse the obtained
results of the optimisation step; (b) assign the new strata
labels to the sampling frame; (c) select a sample from the new
frame accordingly to the best allocation.
Functions for the execution of the genetic algorithm are a modified
version of the functions in the 'genalg' package.
Author: Giulio Barcaroli, Daniela Pagliuca and Egon Willighagen
Maintainer: Giulio Barcaroli
DESCRIPTION | 8 ++++----
MD5 | 21 +++++++++++----------
NEWS | 9 +++++++++
R/optimizeStrata.R | 6 +++---
R/strataGenalg.R | 10 ++++++----
build/vignette.rds |binary
inst/CITATION |only
inst/doc/SamplingStrataVignette.Rnw | 3 ++-
inst/doc/SamplingStrataVignette.pdf |binary
man/optimizeStrata.Rd | 13 ++++++++++---
vignettes/SamplingStrata.bib | 23 ++++++++++++++++-------
vignettes/SamplingStrataVignette.Rnw | 3 ++-
12 files changed, 63 insertions(+), 33 deletions(-)
Permanent link
Title: Using Graphs as a Navigational Infrastructure.
Diff between RnavGraph versions 0.1.6 dated 2013-05-01 and 0.1.7 dated 2014-10-21
Description: GUI to explore high dimensional data (including image data) using graphs as navigational infrastructure.
Author: Adrian R. Waddell and R. Wayne Oldford
Maintainer: Adrian Waddell
DESCRIPTION | 19 +-
MD5 | 15 -
NAMESPACE | 3
NEWS | 5
R/scagNav.R | 434 ++++++++++++++++++++++++-------------------------
R/zzz.R | 24 +-
build |only
inst/doc/RnavGraph.pdf |binary
man/scagEdgeWeights.Rd | 12 -
9 files changed, 260 insertions(+), 252 deletions(-)
Title: Jackknife Estimates of Kaplan-Meier Estimators or Integrals
Diff between jackknifeKME versions 1.0 dated 2013-02-24 and 1.1 dated 2014-10-21
Description: The package is for computing both the original and modified jackknife estimates of Kaplan-Meier estimators.
Author: Hasinur Rahaman Khan and Ewart Shaw
Maintainer: Hasinur Rahaman Khan
DESCRIPTION | 15 +++++++--------
MD5 | 14 +++++++-------
NAMESPACE | 1 +
man/jackknifeKME-package.Rd | 19 ++++++++++++-------
man/jackknifeKME.Rd | 11 ++++++++---
man/kmweight.Rd | 2 +-
man/kmweight.corr.Rd | 4 ++--
man/simdata.Rd | 2 +-
8 files changed, 39 insertions(+), 29 deletions(-)
Title: Categorical Data Analysis and Visualization
Diff between extracat versions 1.7-0 dated 2014-05-20 and 1.7-1 dated 2014-10-21
Description: Categorical Data Analysis and Visualization
Author: Alexander Pilhoefer
Maintainer: Alexander Pilhoefer
extracat-1.7-0/extracat/R/listen.R |only
extracat-1.7-0/extracat/R/resort2.R |only
extracat-1.7-0/extracat/man/cpcp.Rd |only
extracat-1.7-0/extracat/man/listen.Rd |only
extracat-1.7-0/extracat/man/resort.Rd |only
extracat-1.7-0/extracat/man/spread.Rd |only
extracat-1.7-1/extracat/DESCRIPTION | 15 -
extracat-1.7-1/extracat/MD5 | 46 ++--
extracat-1.7-1/extracat/NAMESPACE | 9
extracat-1.7-1/extracat/R/boxplot2g.R | 16 +
extracat-1.7-1/extracat/R/caclust.R | 8
extracat-1.7-1/extracat/R/cpcp2.R | 38 +---
extracat-1.7-1/extracat/R/facetshade.R | 259 ++++++++++++++++++++++++----
extracat-1.7-1/extracat/R/optile_skeleton.r | 30 +--
extracat-1.7-1/extracat/R/rmb.R | 8
extracat-1.7-1/extracat/R/rmbmat2.R | 2
extracat-1.7-1/extracat/R/scpcp.R | 109 +++++------
extracat-1.7-1/extracat/R/sortca.R | 9
extracat-1.7-1/extracat/R/steptile.R | 16 -
extracat-1.7-1/extracat/R/visid.R | 13 -
extracat-1.7-1/extracat/man/ahist.Rd | 3
extracat-1.7-1/extracat/man/extracat.Rd | 2
extracat-1.7-1/extracat/man/facetshade.Rd | 58 +++++-
extracat-1.7-1/extracat/man/fluctile.Rd | 2
extracat-1.7-1/extracat/man/rmb.Rd | 2
extracat-1.7-1/extracat/man/scpcp.Rd | 18 +
extracat-1.7-1/extracat/man/steptile.Rd | 12 -
27 files changed, 447 insertions(+), 228 deletions(-)
Title: A Robust, High Performance JSON Parser and Generator for R
Diff between jsonlite versions 0.9.12 dated 2014-09-27 and 0.9.13 dated 2014-10-21
Description: A fast JSON parser and generator optimized for statistical data and
the web. Started out as a fork of RJSONIO, but has been completely rewritten
in recent versions. The package offers flexible, robust, high performance
tools for working with JSON in R and is particularly powerful for building
pipelines and interacting with web APIs. The parser implementation is based
on the mapping described in the vignette of the package (Ooms, 2014). In
addition to drop-in replacements for toJSON and fromJSON, jsonlite contains
functions to stream, validate, and prettify JSON data, and many unit
tests to verify that all edge cases are encoded and decoded consistently
for use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms
jsonlite-0.9.12/jsonlite/R/asJSON.integer.R |only
jsonlite-0.9.13/jsonlite/DESCRIPTION | 8 +--
jsonlite-0.9.13/jsonlite/MD5 | 40 ++++++++--------
jsonlite-0.9.13/jsonlite/NAMESPACE | 1
jsonlite-0.9.13/jsonlite/NEWS | 7 ++
jsonlite-0.9.13/jsonlite/R/asJSON.array.R | 4 -
jsonlite-0.9.13/jsonlite/R/asJSON.numeric.R | 30 ++++--------
jsonlite-0.9.13/jsonlite/R/download.R | 8 ++-
jsonlite-0.9.13/jsonlite/R/fromJSON.R | 14 ++---
jsonlite-0.9.13/jsonlite/R/loadpkg.R | 2
jsonlite-0.9.13/jsonlite/R/num_to_char.R |only
jsonlite-0.9.13/jsonlite/R/raw_to_json.R |only
jsonlite-0.9.13/jsonlite/R/stream.R | 14 +++--
jsonlite-0.9.13/jsonlite/inst/doc/json-mapping.pdf |binary
jsonlite-0.9.13/jsonlite/inst/doc/json-opencpu.pdf |binary
jsonlite-0.9.13/jsonlite/inst/tests/test-libjson-utf8.R | 14 ++---
jsonlite-0.9.13/jsonlite/man/fromJSON.Rd | 5 --
jsonlite-0.9.13/jsonlite/man/stream_in.Rd | 2
jsonlite-0.9.13/jsonlite/src/Makevars | 8 +--
jsonlite-0.9.13/jsonlite/src/modp_numtoa.c |only
jsonlite-0.9.13/jsonlite/src/modp_numtoa.h |only
jsonlite-0.9.13/jsonlite/src/num_to_char.c |only
jsonlite-0.9.13/jsonlite/src/yajl/readme.txt | 1
jsonlite-0.9.13/jsonlite/src/yajl/yajl_tree.c | 6 ++
24 files changed, 86 insertions(+), 78 deletions(-)