Thu, 23 Oct 2014

Package splitstackshape updated to version 1.4.2 with previous version 1.4.0 dated 2014-10-13

Title: Stack and Reshape Datasets After Splitting Concatenated Values
Description: Online data collection tools like Google Forms often export multiple-response questions with data concatenated in cells. The concat.split (cSplit) family of functions splits such data into separate cells. The package also includes functions to stack groups of columns and to reshape wide data, even when the data are "unbalanced"---something which reshape (from base R) does not handle, and which melt and dcast from reshape2 do not easily handle.
Author: Ananda Mahto
Maintainer: Ananda Mahto

Diff between splitstackshape versions 1.4.0 dated 2014-10-13 and 1.4.2 dated 2014-10-23

 DESCRIPTION                          |    8 +++----
 MD5                                  |   40 +++++++++++++++++++----------------
 NAMESPACE                            |    2 +
 NEWS                                 |   14 ++++++++++++
 R/Stacked.R                          |    3 +-
 R/cSplit.R                           |   27 +++++++++++++++++++----
 R/cSplit_f.R                         |   15 +++++++++----
 R/concat.split.R                     |   18 ++++++---------
 R/expandRows.R                       |    5 ++++
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 README.md                            |    3 +-
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 23 files changed, 117 insertions(+), 58 deletions(-)

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Package rtkpp updated to version 0.8.3 with previous version 0.8.2 dated 2014-10-21

Title: STK++ Integration To R Using Rcpp
Description: STK++ (http://www.stkpp.org) is a collection of C++ classes for statistics, clustering, linear algebra, arrays (with an Eigen-like API), regression, dimension reduction, etc. The integration of the library to R is using Rcpp. Some functionalities of the Clustering project provided by the library are available in the R environment as R functions. The rtkpp package includes the header files from the STK++ library (currently version 0.8.2). Thus users do not need to install STK++ itself in order to use it. STK++ is licensed under the GNU LGPL version 2 or later. rtkpp (the stkpp integration into R) is licensed under the GNU GPL version 2 or later.
Author: Serge Iovleff [aut, cre], Vincent Kubicki [ctb], Quentin Grimonprez [ctb], Parmeet Bhatia [ctb]
Maintainer: Serge Iovleff

Diff between rtkpp versions 0.8.2 dated 2014-10-21 and 0.8.3 dated 2014-10-23

 src/makefile                                                                                                          |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/DESCRIPTION                                                               |   11 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/MD5                                                                       |   82 ++--
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterCategorical.R                                                    |   10 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterDiagGaussian.R                                                   |   61 ++-
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterGamma.R                                                          |    7 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterModelNames.R                                                     |   12 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/IClusterModel.R                                                         |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/cleanup                                                                   |    2 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/NEWS.Rd                                                              |   17 -
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/makefile                                                             |   14 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/AAModels/src/makefile                                       |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Algebra/include/STK_Qr.h                                    |    7 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Algebra/src/makefile                                        |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Arrays/include/STK_ArrayBase.h                              |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Arrays/include/STK_IArray2D.h                               |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Arrays/src/makefile                                         |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/ExponentialMixtureModels                 |only
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 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/STK_MixtureComposer.h                    |    9 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/STK_MixtureCriterion.h                   |   16 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/STK_MixtureManager.h                     |   42 ++
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/src/makefile                                     |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/DManager/include/STK_DataHandler.h                          |    2 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/DManager/src/STK_DataFrame.cpp                              |    6 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/DManager/src/STK_DataHandler.cpp                            |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Regress/src/makefile                                        |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Rtkpp/include/STK_RDataHandler.h                            |   14 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Rtkpp/include/STK_RcppMatrix.h                              |   18 +
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Rtkpp/include/STK_RcppVector.h                              |   18 +
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Sdk/src/makefile                                            |    4 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/clusterCategorical.Rd                                                 |   12 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/clusterDiagGaussian.Rd                                                |    9 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/clusterGamma.Rd                                                       |    7 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/diagGaussianNames.Rd                                                  |   38 --
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/gammaNames.Rd                                                         |   36 --
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/Makevars                                                              |   22 -
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/STK_ClusterFacade.cpp                                                 |    2 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/STK_ClusterLauncher.cpp                                               |  167 +++++-----
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/STK_RDataHandler.cpp                                                  |    2 
 tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/clusterMixture.cpp                                                    |    2 
 41 files changed, 408 insertions(+), 291 deletions(-)

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New package rsml with initial version 1.0
Package: rsml
Type: Package
Title: Root System Markup Language (RSML) file processing
Version: 1.0
Date: 2014-07-22
Author: Guillaume Lobet
Maintainer: Guillaume Lobet
Description: Read and analyse Root System Markup Language (RSML) files.
License: GPL-2
Imports: XML,rgl
Packaged: 2014-10-23 14:10:40 UTC; guillaumelobet
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-23 17:25:08

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Package leafletR updated to version 0.3-1 with previous version 0.3-0 dated 2014-09-12

Title: Interactive Web-Maps Based on the Leaflet JavaScript Library
Description: Display your spatial data on interactive web-maps using the open-source JavaScript library Leaflet. The package provides basic web-mapping functionality to combine vector data and online map tiles from different sources.
Author: Christian Graul, with contributions from Francois Guillem
Maintainer: Christian Graul

Diff between leafletR versions 0.3-0 dated 2014-09-12 and 0.3-1 dated 2014-10-23

 DESCRIPTION                |   10 ++++-----
 MD5                        |   41 +++++++++++++++++++-----------------
 NAMESPACE                  |    2 +
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 R/zzz.R                    |    8 +++++--
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 23 files changed, 226 insertions(+), 131 deletions(-)

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Package sld updated to version 0.3 with previous version 0.2.1 dated 2014-08-15

Title: Estimation and Use of the Quantile-Based Skew Logistic Distribution
Description: The skew logistic distribution is a quantile-defined generalisation of the logistic distribution (van Staden and King 2015). Provides random numbers, quantiles, probabilities, densities and density quantiles for the distribution. It provides Quantile-Quantile plots and method of L-Moments estimation (including asymptotic standard errors) for the distribution.
Author: Robert King , Paul van Staden
Maintainer: Robert King

Diff between sld versions 0.2.1 dated 2014-08-15 and 0.3 dated 2014-10-23

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 man/qqsl.Rd   |   12 ++++++++----
 12 files changed, 112 insertions(+), 40 deletions(-)

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Package sgof updated to version 2.1.1 with previous version 2.1 dated 2014-07-11

Title: Multiple hypothesis testing
Description: This package implements six different methods for multiple testing problems. The SGoF-type methods and the BH and BY false discovery rate controlling procedures.
Author: Irene Castro Conde and Jacobo de Una Alvarez.
Maintainer: Irene Castro Conde

Diff between sgof versions 2.1 dated 2014-07-11 and 2.1.1 dated 2014-10-23

 sgof-2.1.1/sgof/DESCRIPTION                  |   12 
 sgof-2.1.1/sgof/MD5                          |   31 
 sgof-2.1.1/sgof/NAMESPACE                    |    4 
 sgof-2.1.1/sgof/R/BBSGoF.R                   |  919 +++++++++++++++------------
 sgof-2.1.1/sgof/R/print.BBSGoF.R             |    4 
 sgof-2.1.1/sgof/man/BBSGoF.Rd                |    3 
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 18 files changed, 566 insertions(+), 441 deletions(-)

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Package CAMAN updated to version 0.72 with previous version 0.71 dated 2014-08-09

Title: Finite Mixture Models and meta-analysis tools - based on C.A.MAN
Description: Tools for the analysis of finite semiparametric mixtures. These are useful when data is heterogeneous, e.g. in pharmacokinetics or meta-analysis. The NPMLE and VEM algorithms (flexible support size) and EM algorithms (fixed support size) are provided for univariate and bivariate data
Author: Peter Schlattmann , Johannes Hoehne, Maryna Verba
Maintainer: Philipp Doebler

Diff between CAMAN versions 0.71 dated 2014-08-09 and 0.72 dated 2014-10-23

 DESCRIPTION |   14 +++++++-------
 MD5         |    2 +-
 2 files changed, 8 insertions(+), 8 deletions(-)

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New package matR with initial version 0.9
Package: matR
Type: Package
Title: Metagenomics Analysis Tools for R
Authors@R: c (person ("Daniel", "Braithwaite", role = c ("aut", "cre"), email = "contact.dtb@gmail.com"), person ("Kevin", "Keegan", role = "aut", email = "keegan@mcs.anl.gov"), person (c ("University", "of"), "Chicago", role = "cph"))
Version: 0.9
Depends: R (>= 2.10), MGRASTer, BIOM.utils, graphics, stats, utils
Imports:
Suggests: RJSONIO, qvalue, ecodist, gplots, scatterplot3d
URL: https://github.com/MG-RAST/matR/
Date: 2014-10-22
Description: An analysis platform for metagenomics combining specialized tools and workflows, easy handling of the BIOM format, and transparent access to MG-RAST resources. matR integrates easily with other R packages and non-R software.
License: BSD_2_clause + file LICENSE
Copyright: University of Chicago
LazyData: yes
Collate: utils.R biom-ext.R client.R graphics.R analysis-support.R analysis-misc.R distx.R rowstats.R transform.R boxplot.R princomp.R image.R init.R
Packaged: 2014-10-23 07:39:09 UTC; dan
Author: Daniel Braithwaite [aut, cre], Kevin Keegan [aut], University of Chicago [cph]
Maintainer: Daniel Braithwaite
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-23 11:50:13

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Package IsingFit updated to version 0.3.0 with previous version 0.2.0 dated 2014-04-23

Title: Fitting Ising models using the eLasso method
Description: This network estimation procedure eLasso, which is based on the Ising model, combines l1-regularized logistic regression with model selection based on the Extended Bayesian Information Criterion (EBIC). EBIC is a fit measure that identifies relevant relationships between variables. The resulting network consists of variables as nodes and relevant relationships as edges. Can deal with binary data.
Author: Claudia van Borkulo, Sacha Epskamp, with contributions from Alexander Robitzsch
Maintainer: Claudia van Borkulo

Diff between IsingFit versions 0.2.0 dated 2014-04-23 and 0.3.0 dated 2014-10-23

 DESCRIPTION             |    8 -
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 man/isingfit-package.rd |    6 -
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 5 files changed, 131 insertions(+), 107 deletions(-)

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Package spatstat updated to version 1.39-0 with previous version 1.38-1 dated 2014-08-28

Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network. Contains about 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported. Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm similar to glm. Types of models include Poisson, Gibbs, Cox and cluster point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley , Rolf Turner and Ege Rubak , with substantial contributions of code by Kasper Klitgaard Berthelsen; Abdollah Jalilian; Marie-Colette van Lieshout; Dominic Schuhmacher; and Rasmus Waagepetersen. Additional contributions by Q.W. Ang; S. Azaele; M. Baddeley; C. Beale; M. Bell; R. Bernhardt; T. Bendtsen; A. Bevan; B. Biggerstaff; L. Bischof; R. Bivand; J.M. Blanco Moreno; F. Bonneu; J. Burgos; S. Byers; Y.M. Chang; J.B. Chen; I. Chernayavsky; Y.C. Chin; B. Christensen; J.-F. Coeurjolly; R. Corria Ainslie; M. de la Cruz; P. Dalgaard; S. Das; P.J. Diggle; P. Donnelly; I. Dryden; S. Eglen; O. Flores; E.D. Ford; P. Forbes; S. Frank; J. Franklin; N. Funwi-Gabga; O. Garcia; A. Gault; M. Genton; S. Ghalandarayeshi; J. Gilbey; J. Goldstick; P. Grabarnik; C. Graf; U. Hahn; A. Hardegen; M. Hering; M.B. Hansen; M. Hazelton; J. Heikkinen; K. Hornik; P. Hunziker; R. Ihaka; A. Jammalamadaka; R. John-Chandran; D. Johnson; M. Khanmohammadi; M. Kuhn; J. Laake; F. Lavancier; T. Lawrence; R.A. Lamb; J. Lee; G.P. Leser; H.T. Li; G. Limitsios; B. Madin; J. Marcus; K. Marchikanti; R. Mark; J. Mateu; P. McCullagh; U. Mehlig; S. Meyer; X.C. Mi; L. De Middeleer; R.K. Milne; J. Moller; E. Mudrak; G.M. Nair; N. Nava; L.S. Nielsen; F. Nunes; J.R. Nyengaard; J. Oehlschlaegel; T. Onkelinx; S. O'Riordan; E. Parilov; J. Picka; N. Picard; M. Porter; S. Protsiv; A. Raftery; S. Rakshit; P. Ramon; X. Raynaud, M. Reiter; T.O. Richardson; B.D. Ripley; E. Rosenbaum; B. Rowlingson; J. Rudokas; J. Rudge; C. Ryan; F. Safavimanesh; A. Sarkka; K. Schladitz; S. Schutte; B.T. Scott; G.C. Shen; V. Shcherbakov; I.-M. Sintorn; Y. Song; M. Spiess; M. Stevenson; K. Stucki; M. Sumner; P. Surovy; B. Taylor; T. Thorarinsdottir; B. Turlach; K. Ummer; M. Uppala; A. van Burgel; T. Verbeke; M. Vihtakari; A. Villers; F. Vinatier; H. Wang; H. Wendrock; J. Wild; C. Witthoft; S. Wong; M.E. Zamboni and A. Zeileis.
Maintainer: Adrian Baddeley

Diff between spatstat versions 1.38-1 dated 2014-08-28 and 1.39-0 dated 2014-10-23

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 spatstat-1.39-0/spatstat/R/fryplot.R                |    2 
 spatstat-1.39-0/spatstat/R/fv.R                     |  456 +++++++++++---------
 spatstat-1.39-0/spatstat/R/hopskel.R                |only
 spatstat-1.39-0/spatstat/R/hyperframe.R             |    1 
 spatstat-1.39-0/spatstat/R/intensity.R              |    2 
 spatstat-1.39-0/spatstat/R/is.subset.owin.R         |    6 
 spatstat-1.39-0/spatstat/R/istat.R                  |    2 
 spatstat-1.39-0/spatstat/R/leverage.R               |    7 
 spatstat-1.39-0/spatstat/R/linnet.R                 |    4 
 spatstat-1.39-0/spatstat/R/listof.R                 |    8 
 spatstat-1.39-0/spatstat/R/localK.R                 |    6 
 spatstat-1.39-0/spatstat/R/localpcf.R               |    2 
 spatstat-1.39-0/spatstat/R/logistic.R               |    8 
 spatstat-1.39-0/spatstat/R/lohboot.R                |   27 -
 spatstat-1.39-0/spatstat/R/markcorr.R               |   14 
 spatstat-1.39-0/spatstat/R/measures.R               |   52 +-
 spatstat-1.39-0/spatstat/R/mincontrast.R            |  205 ++++----
 spatstat-1.39-0/spatstat/R/minnndist.R              |   54 +-
 spatstat-1.39-0/spatstat/R/morisita.R               |only
 spatstat-1.39-0/spatstat/R/morphology.R             |    8 
 spatstat-1.39-0/spatstat/R/mpl.R                    |    2 
 spatstat-1.39-0/spatstat/R/nnmark.R                 |    5 
 spatstat-1.39-0/spatstat/R/options.R                |    6 
 spatstat-1.39-0/spatstat/R/pairorient.R             |   32 +
 spatstat-1.39-0/spatstat/R/pcf.R                    |    8 
 spatstat-1.39-0/spatstat/R/pcfinhom.R               |   12 
 spatstat-1.39-0/spatstat/R/pcfmulti.R               |    8 
 spatstat-1.39-0/spatstat/R/pcfmulti.inhom.R         |   12 
 spatstat-1.39-0/spatstat/R/persp.im.R               |only
 spatstat-1.39-0/spatstat/R/plot.fv.R                |   75 ++-
 spatstat-1.39-0/spatstat/R/plot.im.R                |  234 ++--------
 spatstat-1.39-0/spatstat/R/plot.listof.R            |    1 
 spatstat-1.39-0/spatstat/R/plot.owin.R              |   11 
 spatstat-1.39-0/spatstat/R/plot.plotppm.R           |   17 
 spatstat-1.39-0/spatstat/R/plot.ppp.R               |    2 
 spatstat-1.39-0/spatstat/R/ppp.R                    |   31 +
 spatstat-1.39-0/spatstat/R/progress.R               |    2 
 spatstat-1.39-0/spatstat/R/psp.R                    |    4 
 spatstat-1.39-0/spatstat/R/psst.R                   |   18 
 spatstat-1.39-0/spatstat/R/psstA.R                  |   10 
 spatstat-1.39-0/spatstat/R/psstG.R                  |   16 
 spatstat-1.39-0/spatstat/R/quadrattest.R            |    4 
 spatstat-1.39-0/spatstat/R/random.R                 |    4 
 spatstat-1.39-0/spatstat/R/relrisk.R                |    8 
 spatstat-1.39-0/spatstat/R/resid4plot.R             |    4 
 spatstat-1.39-0/spatstat/R/resolve.defaults.R       |   27 -
 spatstat-1.39-0/spatstat/R/rho2hat.R                |    6 
 spatstat-1.39-0/spatstat/R/rhohat.R                 |    8 
 spatstat-1.39-0/spatstat/R/rmh.default.R            |    8 
 spatstat-1.39-0/spatstat/R/rmhmodel.ppm.R           |    4 
 spatstat-1.39-0/spatstat/R/rotmean.R                |only
 spatstat-1.39-0/spatstat/R/scanstat.R               |    3 
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 spatstat-1.39-0/spatstat/R/tess.R                   |    2 
 spatstat-1.39-0/spatstat/R/util.R                   |   62 ++
 spatstat-1.39-0/spatstat/R/varblock.R               |  111 +++-
 spatstat-1.39-0/spatstat/R/vcov.ppm.R               |   12 
 spatstat-1.39-0/spatstat/R/weights.R                |    2 
 spatstat-1.39-0/spatstat/R/window.R                 |   56 +-
 spatstat-1.39-0/spatstat/R/wingeom.R                |  103 +++-
 spatstat-1.39-0/spatstat/R/xypolygon.R              |    8 
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 spatstat-1.39-0/spatstat/inst/doc/shapefiles.pdf    |binary
 spatstat-1.39-0/spatstat/inst/doc/updates.R         |    4 
 spatstat-1.39-0/spatstat/inst/doc/updates.Rnw       |   91 +++
 spatstat-1.39-0/spatstat/inst/doc/updates.pdf       |binary
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 spatstat-1.39-0/spatstat/man/Kmeasure.Rd            |    9 
 spatstat-1.39-0/spatstat/man/Kscaled.Rd             |   48 +-
 spatstat-1.39-0/spatstat/man/Ksector.Rd             |   23 -
 spatstat-1.39-0/spatstat/man/anemones.Rd            |    3 
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 spatstat-1.39-0/spatstat/man/as.function.fv.Rd      |    4 
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 spatstat-1.39-0/spatstat/man/colourtools.Rd         |   10 
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 spatstat-1.39-0/spatstat/man/edge.Trans.Rd          |   30 +
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 spatstat-1.39-0/spatstat/man/eem.Rd                 |    2 
 spatstat-1.39-0/spatstat/man/eroded.areas.Rd        |    5 
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 spatstat-1.39-0/spatstat/man/harmonise.fv.Rd        |   10 
 spatstat-1.39-0/spatstat/man/harmonise.im.Rd        |   10 
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 spatstat-1.39-0/spatstat/man/pairorient.Rd          |   17 
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 spatstat-1.39-0/spatstat/man/plot.fv.Rd             |    8 
 spatstat-1.39-0/spatstat/man/plot.im.Rd             |   48 +-
 spatstat-1.39-0/spatstat/man/plot.msr.Rd            |    4 
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 spatstat-1.39-0/spatstat/src/Egeyer.c               |   12 
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 spatstat-1.39-0/spatstat/vignettes/packagesizes.txt |    1 
 spatstat-1.39-0/spatstat/vignettes/updates.Rnw      |   91 +++
 208 files changed, 3647 insertions(+), 2006 deletions(-)

More information about spatstat at CRAN
Permanent link

Package MRH updated to version 1.1 with previous version 1.0 dated 2014-10-17

Title: Multi-Resolution Estimation of the Hazard Rate
Description: Used on survival data to jointly estimate the hazard rate and the effects of covariates on failure times.
Author: Yolanda Hagar, Yuanting Chen, Vanja Dukic
Maintainer: Yolanda Hagar

Diff between MRH versions 1.0 dated 2014-10-17 and 1.1 dated 2014-10-23

 DESCRIPTION                      |   10 +++++-----
 MD5                              |   14 +++++++-------
 NAMESPACE                        |    3 ++-
 R/FunctionsNotforUser_Assorted.r |    1 -
 R/MRHCovNPHBA.r                  |    8 ++++----
 R/MRHCovPH.r                     |    8 ++++----
 R/S3functions.r                  |    1 -
 inst/doc/MRH.pdf                 |binary
 8 files changed, 22 insertions(+), 23 deletions(-)

More information about MRH at CRAN
Permanent link

Package JADE updated to version 1.9-92 with previous version 1.9-91 dated 2013-11-11

Title: JADE and other BSS methods as well as some BSS performance criteria
Description: The package ports JF Cardoso's JADE algorithm as well as his function for joint diagonalization. The package also includes several other blind source separation (BSS) methods, like AMUSE and SOBI, as well as some criteria for performance evaluation of BSS algorithms.
Author: Klaus Nordhausen, Jean-Francois Cardoso, Jari Miettinen, Hannu Oja, Esa Ollila, Sara Taskinen
Maintainer: Klaus Nordhausen

Diff between JADE versions 1.9-91 dated 2013-11-11 and 1.9-92 dated 2014-10-23

 DESCRIPTION         |   10 +++++-----
 MD5                 |    8 ++++----
 R/FOBI.R            |    2 +-
 inst/ChangeLog      |    7 +++++++
 man/JADE-package.Rd |    4 ++--
 5 files changed, 19 insertions(+), 12 deletions(-)

More information about JADE at CRAN
Permanent link

Package httpuv updated to version 1.3.2 with previous version 1.3.0 dated 2014-04-04

Title: HTTP and WebSocket server library
Description: httpuv provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)
Author: RStudio, Inc.
Maintainer: Joe Cheng

Diff between httpuv versions 1.3.0 dated 2014-04-04 and 1.3.2 dated 2014-10-23

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 httpuv-1.3.2/httpuv/MD5                          |   39 ++--
 httpuv-1.3.2/httpuv/NAMESPACE                    |    8 
 httpuv-1.3.2/httpuv/NEWS                         |   16 +
 httpuv-1.3.2/httpuv/R/RcppExports.R              |   52 +++++
 httpuv-1.3.2/httpuv/R/httpuv.R                   |   10 -
 httpuv-1.3.2/httpuv/README.md                    |   16 +
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 httpuv-1.3.2/httpuv/man/rawToBase64.Rd           |    9 -
 httpuv-1.3.2/httpuv/man/runServer.Rd             |   41 ++--
 httpuv-1.3.2/httpuv/man/service.Rd               |   25 +-
 httpuv-1.3.2/httpuv/man/startDaemonizedServer.Rd |   77 +++-----
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 httpuv-1.3.2/httpuv/src/RcppExports.cpp          |  174 ++++++++++++++-----
 httpuv-1.3.2/httpuv/src/httpuv.cpp               |  202 +++++++++++++++++++++++
 httpuv-1.3.2/httpuv/src/websockets.cpp           |    6 
 22 files changed, 606 insertions(+), 259 deletions(-)

More information about httpuv at CRAN
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Package highr updated to version 0.4 with previous version 0.3 dated 2013-10-26

Title: Syntax highlighting for R
Description: This package provides syntax highlighting for R source code. Currently it supports LaTeX and HTML output. Source code of other languages can be supported via Andre Simon's Highlight package.
Author: Christopher Gandrud [ctb], Qiang Li [ctb], Yixuan Qiu [aut], Yihui Xie [aut, cre]
Maintainer: Yihui Xie

Diff between highr versions 0.3 dated 2013-10-26 and 0.4 dated 2014-10-23

 DESCRIPTION                   |   18 ++++++---
 MD5                           |   24 ++++++------
 NEWS                          |   13 ++++++
 R/highlight.R                 |   12 ++++--
 README.md                     |    2 -
 build/vignette.rds            |binary
 inst/doc/highr-custom.R       |    4 --
 inst/doc/highr-custom.html    |    9 +++-
 inst/doc/highr-internals.R    |   10 -----
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 man/hi_andre.Rd               |   16 +++-----
 man/hilight.Rd                |   82 ++++++++++++++++++------------------------
 tests/testit/test-hilight.R   |    5 ++
 13 files changed, 113 insertions(+), 107 deletions(-)

More information about highr at CRAN
Permanent link


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