Title: Stack and Reshape Datasets After Splitting Concatenated Values
Diff between splitstackshape versions 1.4.0 dated 2014-10-13 and 1.4.2 dated 2014-10-23
More information about splitstackshape at CRAN
Description: Online data collection tools like Google Forms often export
multiple-response questions with data concatenated in cells. The
concat.split (cSplit) family of functions splits such data into
separate cells. The package also includes functions to stack groups
of columns and to reshape wide data, even when the data are
"unbalanced"---something which reshape (from base R) does not handle,
and which melt and dcast from reshape2 do not easily handle.
Author: Ananda Mahto
Maintainer: Ananda Mahto
DESCRIPTION | 8 +++----
MD5 | 40 +++++++++++++++++++----------------
NAMESPACE | 2 +
NEWS | 14 ++++++++++++
R/Stacked.R | 3 +-
R/cSplit.R | 27 +++++++++++++++++++----
R/cSplit_f.R | 15 +++++++++----
R/concat.split.R | 18 ++++++---------
R/expandRows.R | 5 ++++
R/listCol_l.R |only
R/listCol_w.R |only
R/splitstackshape-package.R | 2 -
R/splitstackshape_helper_functions.R | 15 ++++++++-----
README.md | 3 +-
man/Stacked.Rd | 3 +-
man/cSplit.Rd | 7 ++++--
man/cSplit_f.Rd | 5 +++-
man/concat.split.compact.Rd | 2 -
man/concat.split.expanded.Rd | 2 -
man/listCol_l.Rd |only
man/listCol_w.Rd |only
man/numMat.Rd | 2 -
man/splitstackshape-package.Rd | 2 -
23 files changed, 117 insertions(+), 58 deletions(-)
Permanent link
Title: STK++ Integration To R Using Rcpp
Diff between rtkpp versions 0.8.2 dated 2014-10-21 and 0.8.3 dated 2014-10-23
Description: STK++ (http://www.stkpp.org) is a collection of
C++ classes for statistics, clustering, linear algebra, arrays (with an
Eigen-like API), regression, dimension reduction, etc. The integration of
the library to R is using Rcpp. Some functionalities of the Clustering
project provided by the library are available in the R environment as R
functions.
The rtkpp package includes the header files from the STK++
library (currently version 0.8.2). Thus users do not need to
install STK++ itself in order to use it.
STK++ is licensed under the GNU LGPL version 2 or later. rtkpp
(the stkpp integration into R) is licensed under the
GNU GPL version 2 or later.
Author: Serge Iovleff [aut, cre],
Vincent Kubicki [ctb],
Quentin Grimonprez [ctb],
Parmeet Bhatia [ctb]
Maintainer: Serge Iovleff
src/makefile | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/DESCRIPTION | 11
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/MD5 | 82 ++--
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterCategorical.R | 10
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterDiagGaussian.R | 61 ++-
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterGamma.R | 7
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/ClusterModelNames.R | 12
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/R/IClusterModel.R | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/cleanup | 2
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/NEWS.Rd | 17 -
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/makefile | 14
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/AAModels/src/makefile | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Algebra/include/STK_Qr.h | 7
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Algebra/src/makefile | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Arrays/include/STK_ArrayBase.h | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Arrays/include/STK_IArray2D.h | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Arrays/src/makefile | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/ExponentialMixtureModels |only
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/GammaMixtureModels/STK_GammaParameters.h | 10
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/STK_MixtureComposer.h | 9
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/STK_MixtureCriterion.h | 16
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/include/STK_MixtureManager.h | 42 ++
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Clustering/src/makefile | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/DManager/include/STK_DataHandler.h | 2
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/DManager/src/STK_DataFrame.cpp | 6
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/DManager/src/STK_DataHandler.cpp | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Regress/src/makefile | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Rtkpp/include/STK_RDataHandler.h | 14
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Rtkpp/include/STK_RcppMatrix.h | 18 +
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Rtkpp/include/STK_RcppVector.h | 18 +
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/inst/projects/Sdk/src/makefile | 4
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/clusterCategorical.Rd | 12
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/clusterDiagGaussian.Rd | 9
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/clusterGamma.Rd | 7
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/diagGaussianNames.Rd | 38 --
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/man/gammaNames.Rd | 36 --
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/Makevars | 22 -
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/STK_ClusterFacade.cpp | 2
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/STK_ClusterLauncher.cpp | 167 +++++-----
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/STK_RDataHandler.cpp | 2
tmp/cranberry21822d5a0c3b/rtkpp-0.8.3/rtkpp/src/clusterMixture.cpp | 2
41 files changed, 408 insertions(+), 291 deletions(-)
Title: Interactive Web-Maps Based on the Leaflet JavaScript Library
Diff between leafletR versions 0.3-0 dated 2014-09-12 and 0.3-1 dated 2014-10-23
Description: Display your spatial data on interactive web-maps using the open-source JavaScript library Leaflet. The package provides basic web-mapping functionality to combine vector data and online map tiles from different sources.
Author: Christian Graul, with contributions from Francois Guillem
Maintainer: Christian Graul
DESCRIPTION | 10 ++++-----
MD5 | 41 +++++++++++++++++++-----------------
NAMESPACE | 2 +
R/addBaseMap.R | 3 +-
R/getFeatureType.R | 21 +++++++++++-------
R/getProperties.R | 18 ++++++++++------
R/getTopologies.R |only
R/leaflet.R | 50 +++++++++++++++++++++++++++++----------------
R/zzz.R | 8 +++++--
inst/NEWS | 19 +++++++++++++++++
inst/templates/css.brew | 2 -
inst/templates/data.brew | 41 +++++++++++++++++++++++++++---------
inst/templates/layer.brew |only
inst/templates/legend.brew | 47 +++++++++++++++++++-----------------------
inst/templates/main.brew | 16 +++++++++-----
inst/templates/map.brew | 28 ++++++++++++-------------
inst/templates/popup.brew | 2 +
inst/templates/style.brew | 2 -
man/getFeatureType.Rd | 4 +--
man/getProperties.Rd | 2 -
man/getTopologies.Rd |only
man/leaflet.Rd | 33 ++++++++++++++++++++---------
man/leafletR-package.Rd | 8 ++++---
23 files changed, 226 insertions(+), 131 deletions(-)
Title: Estimation and Use of the Quantile-Based Skew Logistic
Distribution
Diff between sld versions 0.2.1 dated 2014-08-15 and 0.3 dated 2014-10-23
Description: The skew logistic distribution is a quantile-defined generalisation
of the logistic distribution (van Staden and King 2015). Provides random
numbers, quantiles, probabilities, densities and density quantiles for the distribution.
It provides Quantile-Quantile plots and method of L-Moments estimation
(including asymptotic standard errors) for the distribution.
Author: Robert King
Maintainer: Robert King
Changelog | 6 +++++-
DESCRIPTION | 16 ++++++++++------
MD5 | 21 ++++++++++++---------
NEWS | 4 ++++
R/fit.R | 25 +++++++++++++++++++++----
data |only
man/PCB.Rd |only
man/fit.Rd | 34 +++++++++++++++++++++++++++-------
man/lmom.Rd | 12 ++++++++----
man/plotsl.Rd | 5 +++--
man/qbSLD.Rd | 17 ++++++++++++++---
man/qqsl.Rd | 12 ++++++++----
12 files changed, 112 insertions(+), 40 deletions(-)
Title: Multiple hypothesis testing
Diff between sgof versions 2.1 dated 2014-07-11 and 2.1.1 dated 2014-10-23
Description: This package implements six different methods for multiple testing problems. The SGoF-type methods and the BH and BY false discovery rate controlling procedures.
Author: Irene Castro Conde and Jacobo de Una Alvarez.
Maintainer: Irene Castro Conde
sgof-2.1.1/sgof/DESCRIPTION | 12
sgof-2.1.1/sgof/MD5 | 31
sgof-2.1.1/sgof/NAMESPACE | 4
sgof-2.1.1/sgof/R/BBSGoF.R | 919 +++++++++++++++------------
sgof-2.1.1/sgof/R/print.BBSGoF.R | 4
sgof-2.1.1/sgof/man/BBSGoF.Rd | 3
sgof-2.1.1/sgof/man/Bayesian.SGoF.Rd | 3
sgof-2.1.1/sgof/man/Binomial.SGoF.Rd | 2
sgof-2.1.1/sgof/man/SGoF.Rd | 2
sgof-2.1.1/sgof/man/plot.Binomial.SGoF.Rd | 2
sgof-2.1.1/sgof/man/plot.SGoF.Rd | 2
sgof-2.1.1/sgof/man/sgof-package.Rd | 16
sgof-2.1.1/sgof/man/summary.Bayesian.SGoF.Rd | 3
sgof-2.1.1/sgof/man/summary.Binomial.SGoF.Rd | 2
sgof-2.1.1/sgof/man/summary.SGoF.Rd | 2
sgof-2.1/sgof/R/Extended.SGoF.R |only
sgof-2.1/sgof/R/print.Extended.SGoF.R |only
sgof-2.1/sgof/man/Extended.SGoF.Rd |only
18 files changed, 566 insertions(+), 441 deletions(-)
Title: Finite Mixture Models and meta-analysis tools - based on C.A.MAN
Diff between CAMAN versions 0.71 dated 2014-08-09 and 0.72 dated 2014-10-23
Description: Tools for the analysis of finite semiparametric mixtures.
These are useful when data is heterogeneous, e.g. in
pharmacokinetics or meta-analysis. The NPMLE and VEM algorithms
(flexible support size) and EM algorithms (fixed support size)
are provided for univariate and bivariate data
Author: Peter Schlattmann
Maintainer: Philipp Doebler
DESCRIPTION | 14 +++++++-------
MD5 | 2 +-
2 files changed, 8 insertions(+), 8 deletions(-)
Title: Fitting Ising models using the eLasso method
Diff between IsingFit versions 0.2.0 dated 2014-04-23 and 0.3.0 dated 2014-10-23
Description: This network estimation procedure eLasso, which is based on the Ising model, combines l1-regularized logistic regression with model selection based on the Extended Bayesian Information Criterion (EBIC). EBIC is a fit measure that identifies relevant relationships between variables. The resulting network consists of variables as nodes and relevant relationships as edges. Can deal with binary data.
Author: Claudia van Borkulo, Sacha Epskamp, with contributions from Alexander Robitzsch
Maintainer: Claudia van Borkulo
DESCRIPTION | 8 -
MD5 | 8 -
R/IsingFit.R | 206 ++++++++++++++++++++++++++----------------------
man/isingfit-package.rd | 6 -
man/isingfit.rd | 10 +-
5 files changed, 131 insertions(+), 107 deletions(-)
Title: Spatial Point Pattern analysis, model-fitting, simulation, tests
Diff between spatstat versions 1.38-1 dated 2014-08-28 and 1.39-0 dated 2014-10-23
Description: A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, and point patterns on a linear network.
Contains about 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm, kppm, slrm similar to glm. Types of models include Poisson, Gibbs, Cox and cluster point processes. Models may involve dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise, AIC). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley
Maintainer: Adrian Baddeley
spatstat-1.38-1/spatstat/R/morishita.R |only
spatstat-1.39-0/spatstat/DESCRIPTION | 21
spatstat-1.39-0/spatstat/MD5 | 381 +++++++++-------
spatstat-1.39-0/spatstat/NAMESPACE | 85 +++
spatstat-1.39-0/spatstat/NEWS | 314 +++++++++++++
spatstat-1.39-0/spatstat/R/Fest.R | 120 +++--
spatstat-1.39-0/spatstat/R/First.R | 41 +
spatstat-1.39-0/spatstat/R/GJfox.R | 6
spatstat-1.39-0/spatstat/R/Gcom.R | 18
spatstat-1.39-0/spatstat/R/Gest.R | 73 +--
spatstat-1.39-0/spatstat/R/Gmulti.R | 4
spatstat-1.39-0/spatstat/R/Jinhom.R | 8
spatstat-1.39-0/spatstat/R/Kcom.R | 38 -
spatstat-1.39-0/spatstat/R/Kest.R | 275 ++++++------
spatstat-1.39-0/spatstat/R/Kinhom.R | 28 -
spatstat-1.39-0/spatstat/R/Kmeasure.R | 11
spatstat-1.39-0/spatstat/R/Kmulti.R | 14
spatstat-1.39-0/spatstat/R/Kmulti.inhom.R | 8
spatstat-1.39-0/spatstat/R/Kscaled.R | 213 +++++----
spatstat-1.39-0/spatstat/R/Ksector.R | 123 +++--
spatstat-1.39-0/spatstat/R/Tstat.R | 16
spatstat-1.39-0/spatstat/R/adaptive.density.R | 4
spatstat-1.39-0/spatstat/R/addvar.R | 35 -
spatstat-1.39-0/spatstat/R/anova.ppm.R | 150 +++++-
spatstat-1.39-0/spatstat/R/areadiff.R | 2
spatstat-1.39-0/spatstat/R/areainter.R | 2
spatstat-1.39-0/spatstat/R/as.im.R | 5
spatstat-1.39-0/spatstat/R/breakpts.R | 34 -
spatstat-1.39-0/spatstat/R/bw.diggle.R | 2
spatstat-1.39-0/spatstat/R/centroid.R | 8
spatstat-1.39-0/spatstat/R/clarkevans.R | 14
spatstat-1.39-0/spatstat/R/clickpoly.R | 4
spatstat-1.39-0/spatstat/R/closepairs.R | 6
spatstat-1.39-0/spatstat/R/clusterset.R | 4
spatstat-1.39-0/spatstat/R/colourtables.R | 19
spatstat-1.39-0/spatstat/R/colourtools.R | 25 -
spatstat-1.39-0/spatstat/R/deldir.R | 11
spatstat-1.39-0/spatstat/R/derivfv.R | 32 +
spatstat-1.39-0/spatstat/R/diagnoseppm.R | 8
spatstat-1.39-0/spatstat/R/disc.R | 17
spatstat-1.39-0/spatstat/R/discarea.R | 10
spatstat-1.39-0/spatstat/R/edgeRipley.R | 15
spatstat-1.39-0/spatstat/R/edgeTrans.R | 55 +-
spatstat-1.39-0/spatstat/R/envelope.R | 8
spatstat-1.39-0/spatstat/R/eval.fv.R | 27 -
spatstat-1.39-0/spatstat/R/eval.im.R | 161 +++----
spatstat-1.39-0/spatstat/R/exactPdt.R | 23 -
spatstat-1.39-0/spatstat/R/exactdt.R | 133 +++--
spatstat-1.39-0/spatstat/R/fardist.R |only
spatstat-1.39-0/spatstat/R/fitted.ppm.R | 25 -
spatstat-1.39-0/spatstat/R/flipxy.R | 8
spatstat-1.39-0/spatstat/R/fryplot.R | 2
spatstat-1.39-0/spatstat/R/fv.R | 456 +++++++++++---------
spatstat-1.39-0/spatstat/R/hopskel.R |only
spatstat-1.39-0/spatstat/R/hyperframe.R | 1
spatstat-1.39-0/spatstat/R/intensity.R | 2
spatstat-1.39-0/spatstat/R/is.subset.owin.R | 6
spatstat-1.39-0/spatstat/R/istat.R | 2
spatstat-1.39-0/spatstat/R/leverage.R | 7
spatstat-1.39-0/spatstat/R/linnet.R | 4
spatstat-1.39-0/spatstat/R/listof.R | 8
spatstat-1.39-0/spatstat/R/localK.R | 6
spatstat-1.39-0/spatstat/R/localpcf.R | 2
spatstat-1.39-0/spatstat/R/logistic.R | 8
spatstat-1.39-0/spatstat/R/lohboot.R | 27 -
spatstat-1.39-0/spatstat/R/markcorr.R | 14
spatstat-1.39-0/spatstat/R/measures.R | 52 +-
spatstat-1.39-0/spatstat/R/mincontrast.R | 205 ++++----
spatstat-1.39-0/spatstat/R/minnndist.R | 54 +-
spatstat-1.39-0/spatstat/R/morisita.R |only
spatstat-1.39-0/spatstat/R/morphology.R | 8
spatstat-1.39-0/spatstat/R/mpl.R | 2
spatstat-1.39-0/spatstat/R/nnmark.R | 5
spatstat-1.39-0/spatstat/R/options.R | 6
spatstat-1.39-0/spatstat/R/pairorient.R | 32 +
spatstat-1.39-0/spatstat/R/pcf.R | 8
spatstat-1.39-0/spatstat/R/pcfinhom.R | 12
spatstat-1.39-0/spatstat/R/pcfmulti.R | 8
spatstat-1.39-0/spatstat/R/pcfmulti.inhom.R | 12
spatstat-1.39-0/spatstat/R/persp.im.R |only
spatstat-1.39-0/spatstat/R/plot.fv.R | 75 ++-
spatstat-1.39-0/spatstat/R/plot.im.R | 234 ++--------
spatstat-1.39-0/spatstat/R/plot.listof.R | 1
spatstat-1.39-0/spatstat/R/plot.owin.R | 11
spatstat-1.39-0/spatstat/R/plot.plotppm.R | 17
spatstat-1.39-0/spatstat/R/plot.ppp.R | 2
spatstat-1.39-0/spatstat/R/ppp.R | 31 +
spatstat-1.39-0/spatstat/R/progress.R | 2
spatstat-1.39-0/spatstat/R/psp.R | 4
spatstat-1.39-0/spatstat/R/psst.R | 18
spatstat-1.39-0/spatstat/R/psstA.R | 10
spatstat-1.39-0/spatstat/R/psstG.R | 16
spatstat-1.39-0/spatstat/R/quadrattest.R | 4
spatstat-1.39-0/spatstat/R/random.R | 4
spatstat-1.39-0/spatstat/R/relrisk.R | 8
spatstat-1.39-0/spatstat/R/resid4plot.R | 4
spatstat-1.39-0/spatstat/R/resolve.defaults.R | 27 -
spatstat-1.39-0/spatstat/R/rho2hat.R | 6
spatstat-1.39-0/spatstat/R/rhohat.R | 8
spatstat-1.39-0/spatstat/R/rmh.default.R | 8
spatstat-1.39-0/spatstat/R/rmhmodel.ppm.R | 4
spatstat-1.39-0/spatstat/R/rotmean.R |only
spatstat-1.39-0/spatstat/R/scanstat.R | 3
spatstat-1.39-0/spatstat/R/smooth.ppp.R | 4
spatstat-1.39-0/spatstat/R/solist.R |only
spatstat-1.39-0/spatstat/R/stienen.R |only
spatstat-1.39-0/spatstat/R/tess.R | 2
spatstat-1.39-0/spatstat/R/util.R | 62 ++
spatstat-1.39-0/spatstat/R/varblock.R | 111 +++-
spatstat-1.39-0/spatstat/R/vcov.ppm.R | 12
spatstat-1.39-0/spatstat/R/weights.R | 2
spatstat-1.39-0/spatstat/R/window.R | 56 +-
spatstat-1.39-0/spatstat/R/wingeom.R | 103 +++-
spatstat-1.39-0/spatstat/R/xypolygon.R | 8
spatstat-1.39-0/spatstat/data/datalist | 1
spatstat-1.39-0/spatstat/data/sporophores.rda |binary
spatstat-1.39-0/spatstat/data/vesicles.rda |only
spatstat-1.39-0/spatstat/inst/doc/getstart.pdf |binary
spatstat-1.39-0/spatstat/inst/doc/replicated.pdf |binary
spatstat-1.39-0/spatstat/inst/doc/shapefiles.pdf |binary
spatstat-1.39-0/spatstat/inst/doc/updates.R | 4
spatstat-1.39-0/spatstat/inst/doc/updates.Rnw | 91 +++
spatstat-1.39-0/spatstat/inst/doc/updates.pdf |binary
spatstat-1.39-0/spatstat/inst/rawdata |only
spatstat-1.39-0/spatstat/man/Extract.anylist.Rd |only
spatstat-1.39-0/spatstat/man/Extract.solist.Rd |only
spatstat-1.39-0/spatstat/man/Fest.Rd | 67 ++
spatstat-1.39-0/spatstat/man/Gest.Rd | 19
spatstat-1.39-0/spatstat/man/Kest.Rd | 14
spatstat-1.39-0/spatstat/man/Kinhom.Rd | 6
spatstat-1.39-0/spatstat/man/Kmeasure.Rd | 9
spatstat-1.39-0/spatstat/man/Kscaled.Rd | 48 +-
spatstat-1.39-0/spatstat/man/Ksector.Rd | 23 -
spatstat-1.39-0/spatstat/man/anemones.Rd | 3
spatstat-1.39-0/spatstat/man/anova.ppm.Rd | 67 +-
spatstat-1.39-0/spatstat/man/anylist.Rd |only
spatstat-1.39-0/spatstat/man/area.owin.Rd | 15
spatstat-1.39-0/spatstat/man/as.function.fv.Rd | 4
spatstat-1.39-0/spatstat/man/as.hyperframe.Rd | 12
spatstat-1.39-0/spatstat/man/as.layered.Rd | 5
spatstat-1.39-0/spatstat/man/as.solist.Rd |only
spatstat-1.39-0/spatstat/man/circumradius.Rd | 38 -
spatstat-1.39-0/spatstat/man/clarkevans.Rd | 1
spatstat-1.39-0/spatstat/man/clarkevans.test.Rd | 4
spatstat-1.39-0/spatstat/man/colourtools.Rd | 10
spatstat-1.39-0/spatstat/man/deriv.fv.Rd | 1
spatstat-1.39-0/spatstat/man/diameter.Rd | 8
spatstat-1.39-0/spatstat/man/diameter.linnet.Rd |only
spatstat-1.39-0/spatstat/man/dirichlet.Rd | 3
spatstat-1.39-0/spatstat/man/dirichlet.vertices.Rd |only
spatstat-1.39-0/spatstat/man/disc.Rd | 15
spatstat-1.39-0/spatstat/man/discs.Rd |only
spatstat-1.39-0/spatstat/man/edge.Ripley.Rd | 20
spatstat-1.39-0/spatstat/man/edge.Trans.Rd | 30 +
spatstat-1.39-0/spatstat/man/edges.Rd | 4
spatstat-1.39-0/spatstat/man/eem.Rd | 2
spatstat-1.39-0/spatstat/man/eroded.areas.Rd | 5
spatstat-1.39-0/spatstat/man/eval.fv.Rd | 3
spatstat-1.39-0/spatstat/man/fardist.Rd |only
spatstat-1.39-0/spatstat/man/fitted.ppm.Rd | 22
spatstat-1.39-0/spatstat/man/fvnames.Rd | 13
spatstat-1.39-0/spatstat/man/harmonise.Rd |only
spatstat-1.39-0/spatstat/man/harmonise.fv.Rd | 10
spatstat-1.39-0/spatstat/man/harmonise.im.Rd | 10
spatstat-1.39-0/spatstat/man/heather.Rd | 2
spatstat-1.39-0/spatstat/man/hopskel.Rd |only
spatstat-1.39-0/spatstat/man/increment.fv.Rd |only
spatstat-1.39-0/spatstat/man/levelset.Rd | 2
spatstat-1.39-0/spatstat/man/lohboot.Rd | 2
spatstat-1.39-0/spatstat/man/maxnndist.Rd | 12
spatstat-1.39-0/spatstat/man/nnmark.Rd | 15
spatstat-1.39-0/spatstat/man/pairorient.Rd | 17
spatstat-1.39-0/spatstat/man/persp.im.Rd | 50 +-
spatstat-1.39-0/spatstat/man/perspPoints.Rd |only
spatstat-1.39-0/spatstat/man/plot.anylist.Rd |only
spatstat-1.39-0/spatstat/man/plot.fv.Rd | 8
spatstat-1.39-0/spatstat/man/plot.im.Rd | 48 +-
spatstat-1.39-0/spatstat/man/plot.msr.Rd | 4
spatstat-1.39-0/spatstat/man/plot.plotppm.Rd | 13
spatstat-1.39-0/spatstat/man/plot.solist.Rd |only
spatstat-1.39-0/spatstat/man/project2set.Rd |only
spatstat-1.39-0/spatstat/man/rotmean.Rd |only
spatstat-1.39-0/spatstat/man/scanpp.Rd | 34 -
spatstat-1.39-0/spatstat/man/solist.Rd |only
spatstat-1.39-0/spatstat/man/solutionset.Rd | 2
spatstat-1.39-0/spatstat/man/spatstat-internal.Rd | 30 +
spatstat-1.39-0/spatstat/man/spatstat-package.Rd | 11
spatstat-1.39-0/spatstat/man/stienen.Rd |only
spatstat-1.39-0/spatstat/man/summary.anylist.Rd |only
spatstat-1.39-0/spatstat/man/summary.solist.Rd |only
spatstat-1.39-0/spatstat/man/varblock.Rd | 15
spatstat-1.39-0/spatstat/man/vesicles.Rd |only
spatstat-1.39-0/spatstat/src/Ediggatsti.c | 14
spatstat-1.39-0/spatstat/src/Ediggra.c | 14
spatstat-1.39-0/spatstat/src/Efiksel.c | 10
spatstat-1.39-0/spatstat/src/Egeyer.c | 12
spatstat-1.39-0/spatstat/src/Estrauss.c | 9
spatstat-1.39-0/spatstat/src/bdrymask.c |only
spatstat-1.39-0/spatstat/src/discs.c |only
spatstat-1.39-0/spatstat/src/fardist.c |only
spatstat-1.39-0/spatstat/src/fardist.h |only
spatstat-1.39-0/spatstat/src/looptest.h |only
spatstat-1.39-0/spatstat/src/maxnnd.h |only
spatstat-1.39-0/spatstat/src/minnnd.c | 178 +------
spatstat-1.39-0/spatstat/src/minnnd.h |only
spatstat-1.39-0/spatstat/tests/alltests.R | 22
spatstat-1.39-0/spatstat/vignettes/packagesizes.txt | 1
spatstat-1.39-0/spatstat/vignettes/updates.Rnw | 91 +++
208 files changed, 3647 insertions(+), 2006 deletions(-)
Title: Multi-Resolution Estimation of the Hazard Rate
Diff between MRH versions 1.0 dated 2014-10-17 and 1.1 dated 2014-10-23
Description: Used on survival data to jointly estimate the hazard rate and the effects of covariates on failure times.
Author: Yolanda Hagar, Yuanting Chen, Vanja Dukic
Maintainer: Yolanda Hagar
DESCRIPTION | 10 +++++-----
MD5 | 14 +++++++-------
NAMESPACE | 3 ++-
R/FunctionsNotforUser_Assorted.r | 1 -
R/MRHCovNPHBA.r | 8 ++++----
R/MRHCovPH.r | 8 ++++----
R/S3functions.r | 1 -
inst/doc/MRH.pdf |binary
8 files changed, 22 insertions(+), 23 deletions(-)
Title: JADE and other BSS methods as well as some BSS performance
criteria
Diff between JADE versions 1.9-91 dated 2013-11-11 and 1.9-92 dated 2014-10-23
Description: The package ports JF Cardoso's JADE algorithm as well as his function for joint diagonalization. The package also includes several other blind source separation (BSS) methods, like AMUSE and SOBI, as well as some criteria for performance evaluation of BSS algorithms.
Author: Klaus Nordhausen, Jean-Francois Cardoso, Jari Miettinen, Hannu Oja, Esa Ollila, Sara Taskinen
Maintainer: Klaus Nordhausen
DESCRIPTION | 10 +++++-----
MD5 | 8 ++++----
R/FOBI.R | 2 +-
inst/ChangeLog | 7 +++++++
man/JADE-package.Rd | 4 ++--
5 files changed, 19 insertions(+), 12 deletions(-)
Title: HTTP and WebSocket server library
Diff between httpuv versions 1.3.0 dated 2014-04-04 and 1.3.2 dated 2014-10-23
Description: httpuv provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: RStudio, Inc.
Maintainer: Joe Cheng
httpuv-1.3.0/httpuv/man/WebSocket.Rd |only
httpuv-1.3.2/httpuv/DESCRIPTION | 9 -
httpuv-1.3.2/httpuv/MD5 | 39 ++--
httpuv-1.3.2/httpuv/NAMESPACE | 8
httpuv-1.3.2/httpuv/NEWS | 16 +
httpuv-1.3.2/httpuv/R/RcppExports.R | 52 +++++
httpuv-1.3.2/httpuv/R/httpuv.R | 10 -
httpuv-1.3.2/httpuv/README.md | 16 +
httpuv-1.3.2/httpuv/man/WebSocket-class.Rd |only
httpuv-1.3.2/httpuv/man/encodeURI.Rd |only
httpuv-1.3.2/httpuv/man/httpuv-package.Rd | 24 +-
httpuv-1.3.2/httpuv/man/interrupt.Rd | 14 -
httpuv-1.3.2/httpuv/man/rawToBase64.Rd | 9 -
httpuv-1.3.2/httpuv/man/runServer.Rd | 41 ++--
httpuv-1.3.2/httpuv/man/service.Rd | 25 +-
httpuv-1.3.2/httpuv/man/startDaemonizedServer.Rd | 77 +++-----
httpuv-1.3.2/httpuv/man/startServer.Rd | 111 +++++-------
httpuv-1.3.2/httpuv/man/stopDaemonizedServer.Rd | 17 -
httpuv-1.3.2/httpuv/man/stopServer.Rd | 15 -
httpuv-1.3.2/httpuv/src/RcppExports.cpp | 174 ++++++++++++++-----
httpuv-1.3.2/httpuv/src/httpuv.cpp | 202 +++++++++++++++++++++++
httpuv-1.3.2/httpuv/src/websockets.cpp | 6
22 files changed, 606 insertions(+), 259 deletions(-)
Title: Syntax highlighting for R
Diff between highr versions 0.3 dated 2013-10-26 and 0.4 dated 2014-10-23
Description: This package provides syntax highlighting for R source code.
Currently it supports LaTeX and HTML output. Source code of other languages
can be supported via Andre Simon's Highlight package.
Author: Christopher Gandrud [ctb],
Qiang Li [ctb],
Yixuan Qiu [aut],
Yihui Xie [aut, cre]
Maintainer: Yihui Xie
DESCRIPTION | 18 ++++++---
MD5 | 24 ++++++------
NEWS | 13 ++++++
R/highlight.R | 12 ++++--
README.md | 2 -
build/vignette.rds |binary
inst/doc/highr-custom.R | 4 --
inst/doc/highr-custom.html | 9 +++-
inst/doc/highr-internals.R | 10 -----
inst/doc/highr-internals.html | 25 ++++++------
man/hi_andre.Rd | 16 +++-----
man/hilight.Rd | 82 ++++++++++++++++++------------------------
tests/testit/test-hilight.R | 5 ++
13 files changed, 113 insertions(+), 107 deletions(-)