Title: Visualization and Imputation of Missing Values
Diff between VIM versions 4.0.0 dated 2013-10-10 and 4.1.0 dated 2014-10-25
Description: This package introduces new tools for the visualization of missing
and/or imputed values, which can be used for exploring the data and the
structure of the missing and/or imputed values. Depending on this structure
of the missing values, the corresponding methods may help to identify the
mechanism generating the missing values and allows to explore the data
including missing values. In addition, the quality of imputation can be
visually explored using various univariate, bivariate, multiple and
multivariate plot methods. A graphical user interface available in the
separate package VIMGUI allows an easy handling of the implemented plot
methods.
Author: Matthias Templ, Andreas Alfons, Alexander Kowarik, Bernd Prantner
Maintainer: Matthias Templ
DESCRIPTION | 19 -
MD5 | 96 ++++-----
NAMESPACE | 226 +++++++++++-----------
NEWS | 11 +
R/VIM-package.R | 2
R/gower.dist.R | 12 +
R/hotdeck.R | 428 +++++++++++++++++++++++++++++-------------
R/irmi.R | 240 +++++++++++++++---------
R/kNNFaster.R | 87 +++++---
R/regressionImp.R | 19 +
R/utils.R | 4
R/zzz.R | 3
man/SBS5242.Rd | 58 ++---
man/VIM-package.Rd | 112 +++++------
man/aggr.Rd | 460 +++++++++++++++++++++-------------------------
man/alphablend.Rd | 61 +++---
man/barMiss.Rd | 290 +++++++++++++----------------
man/bgmap.Rd | 83 ++++----
man/chorizonDL.Rd | 183 +++++++++---------
man/colSequence.Rd | 157 +++++++--------
man/colormapMiss.Rd | 333 +++++++++++++++------------------
man/countInf.Rd | 57 ++---
man/growdotMiss.Rd | 293 +++++++++++++----------------
man/histMiss.Rd | 300 +++++++++++++-----------------
man/hotdeck.Rd | 117 ++++++-----
man/initialise.Rd | 88 ++++----
man/irmi.Rd | 229 +++++++++++-----------
man/kNN.Rd | 177 ++++++++---------
man/kola.background.Rd | 43 ++--
man/mapMiss.Rd | 186 ++++++++----------
man/marginmatrix.Rd | 159 +++++++--------
man/marginplot.Rd | 281 ++++++++++++----------------
man/matrixplot.Rd | 268 ++++++++++++--------------
man/mosaicMiss.Rd | 198 +++++++++----------
man/pairsVIM.Rd | 195 +++++++++----------
man/parcoordMiss.Rd | 326 ++++++++++++++------------------
man/pbox.Rd | 269 ++++++++++++--------------
man/prepare.Rd | 158 +++++++--------
man/print.summary.aggr.Rd | 55 ++---
man/regressionImp.Rd | 107 +++++-----
man/rugNA.Rd | 130 ++++++-------
man/scattJitt.Rd | 222 ++++++++++------------
man/scattMiss.Rd | 253 +++++++++++--------------
man/scattmatrixMiss.Rd | 265 ++++++++++++--------------
man/sleep.Rd | 56 ++---
man/spineMiss.Rd | 322 ++++++++++++++------------------
man/tao.Rd | 58 ++---
man/testdata.Rd | 58 ++---
man/vmGUIenvir.Rd | 101 +++++-----
49 files changed, 3863 insertions(+), 3992 deletions(-)
Title: Conduct Simulation Studies with a Minimal Amount of Source Code.
Diff between simTool versions 1.0.2 dated 2014-10-14 and 1.0.3 dated 2014-10-25
Description: The simTool package is designed for statistical simulations that
have two components. One component generates the data and the other one
analyzes the data. The main aims of the simTool package are the reduction
of the administrative source code (mainly loops and management code for the
results) and a simple applicability of the package that allows the user to
quickly learn how to work with the simTool package. Parallel computing is
also supported. Finally, convenient functions are provided to summarize the
simulation results.
Author: Marsel Scheer
Maintainer: Marsel Scheer
DESCRIPTION | 9 ++---
MD5 | 12 +++----
NEWS | 9 +++++
R/evalGrids.R | 5 +--
R/simTool-package.R | 18 ++++++-----
inst/doc/simTool.html | 78 ++++++++++++++++++++++++-------------------------
man/simTool-package.Rd | 18 ++++++-----
7 files changed, 81 insertions(+), 68 deletions(-)
Title: Visualization methods for the raster package
Diff between rasterVis versions 0.31 dated 2014-08-25 and 0.32 dated 2014-10-25
Description: The raster package defines classes and methods for spatial raster data access and manipulation. The rasterVis package complements raster providing a set of methods for enhanced visualization and interaction.
Author: Oscar Perpinan Lamigueiro [cre, aut],
Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro
ChangeLog | 34 ++++---
DESCRIPTION | 8 -
MD5 | 20 ++--
R/density.R | 35 ++++---
R/grid.R | 209 +++++++++++++++++++++++------------------------
R/histogram.R | 47 ++++++----
R/levelplot.R | 14 +--
R/xyplot.R | 35 ++++---
README.md | 4
inst/CITATION | 8 -
man/levelplot-methods.Rd | 29 ++++--
11 files changed, 234 insertions(+), 209 deletions(-)
Title: Selecting attributes
Diff between FSelector versions 0.19 dated 2013-02-28 and 0.20 dated 2014-10-25
Description: This package provides functions for selecting attributes
from a given dataset. Attribute subset selection is the process
of identifying and removing as much of the irrelevant and
redundant information as possible.
Author: Piotr Romanski, Lars Kotthoff
Maintainer: Lars Kotthoff
FSelector-0.19/FSelector/LICENSE |only
FSelector-0.19/FSelector/R/entropy.R |only
FSelector-0.20/FSelector/DESCRIPTION | 12
FSelector-0.20/FSelector/MD5 | 62 -
FSelector-0.20/FSelector/NAMESPACE | 47 -
FSelector-0.20/FSelector/R/cutoff.R | 78 +-
FSelector-0.20/FSelector/R/discretize.R | 126 +--
FSelector-0.20/FSelector/R/misc.R | 28
FSelector-0.20/FSelector/R/normalize.R | 40 -
FSelector-0.20/FSelector/R/search.greedy.R | 102 +-
FSelector-0.20/FSelector/R/search.misc.R | 202 ++---
FSelector-0.20/FSelector/R/selector.cfs.R | 292 ++++----
FSelector-0.20/FSelector/R/selector.chi.squared.R | 60 -
FSelector-0.20/FSelector/R/selector.consistency.R | 52 -
FSelector-0.20/FSelector/R/selector.info.gain.R | 76 +-
FSelector-0.20/FSelector/R/selector.oneR.R | 50 -
FSelector-0.20/FSelector/R/selector.random.forest.R | 42 -
FSelector-0.20/FSelector/R/selector.relief.R | 546 +++++++--------
FSelector-0.20/FSelector/man/FSelector-package.Rd | 64 -
FSelector-0.20/FSelector/man/as.simple.formula.Rd | 42 -
FSelector-0.20/FSelector/man/best.first.search.Rd | 100 +-
FSelector-0.20/FSelector/man/cfs.Rd | 52 -
FSelector-0.20/FSelector/man/chi.squared.Rd | 60 -
FSelector-0.20/FSelector/man/consistency.Rd | 60 -
FSelector-0.20/FSelector/man/correlation.Rd | 86 +-
FSelector-0.20/FSelector/man/cutoff.Rd | 94 +-
FSelector-0.20/FSelector/man/exhaustive.search.Rd | 98 +-
FSelector-0.20/FSelector/man/greedy.search.Rd | 102 +-
FSelector-0.20/FSelector/man/hill.climbing.search.Rd | 98 +-
FSelector-0.20/FSelector/man/information.gain.Rd | 100 +-
FSelector-0.20/FSelector/man/oneR.Rd | 60 -
FSelector-0.20/FSelector/man/random.forest.importance.Rd | 62 -
FSelector-0.20/FSelector/man/relief.Rd | 74 +-
33 files changed, 1489 insertions(+), 1478 deletions(-)
Title: Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Diff between spBayesSurv versions 1.0.0 dated 2014-06-12 and 1.0.1 dated 2014-10-25
Description: This package provides several Bayesian survival models for spatial/non-spatial survival data: marginal Bayesian Nonparametric models, marginal Bayesian proportional hazards models, and generalized accelerated failure time frailty models.
Author: Haiming Zhou
Maintainer: Haiming Zhou
DESCRIPTION | 17 +++++++--------
MD5 | 42 ++++++++++++++++++++++----------------
R/GetCurves.R | 45 +++++++++++++++++++++++++++++++++++++----
R/frailtyGAFT.R |only
R/wrappers.R | 7 ++++++
man/GetCurves.Rd | 27 +++++++++++++++++-------
man/anovaDDP.Rd | 10 +++------
man/frailtyGAFT.Rd |only
man/indeptCoxph.Rd | 15 ++++++-------
man/spBayesSurv-package.Rd | 23 ++++++++------------
man/spCopulaCoxph.Rd | 16 ++++++--------
man/spCopulaDDP.Rd | 18 +++++++---------
src/spSurv_Coxph_tools.cpp | 4 +--
src/spSurv_DDP_tools.cpp | 18 ++++++++++++----
src/spSurv_LDTFP_tools.cpp |only
src/spSurv_LDTFP_tools.h |only
src/spSurv_anovaDDP.cpp | 4 +--
src/spSurv_common.cpp | 14 ++++++++++++
src/spSurv_common.h | 3 ++
src/spSurv_frailtyLDTFP.cpp |only
src/spSurv_frailtyLDTFP.h |only
src/spSurv_indeptCoxph.cpp | 2 -
src/spSurv_nonfrailtyLDTFP.cpp |only
src/spSurv_nonfrailtyLDTFP.h |only
src/spSurv_spCopulaCoxph.cpp | 2 -
src/spSurv_spCopulaDDP.cpp | 4 +--
26 files changed, 174 insertions(+), 97 deletions(-)
More information about managelocalrepo at CRAN
Permanent link
Title: CoxPH Model with Log Concave Baseline Distribution
Diff between logconPH versions 1.1 dated 2014-10-20 and 1.2 dated 2014-10-25
Description: Computes a cox PH model with a log concave baseline distribution. If no covariates are provided, estimates the log concave NPMLE. Built specifically for interval censored data, where data is a n by 2 matrix with [i, 1] as the left side of the interval for subject i and [i,2] as right side. Uncensored data can be entered by setting [i,1] = [i,2]. Alternatively, this can also handle uncensored data. If all the data is uncensored, you may enter data as a length(n) vector.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman
DESCRIPTION | 6 +-
MD5 | 14 ++--
R/LogConcave.R | 13 +++-
src/Cpp2Source/QuadProg++.cc | 53 +++++++++--------
src/Cpp2Source/baseClass.cpp | 90 +++++++++++++++++++-----------
src/Cpp2Source/baseClass.h | 3 +
src/Cpp2Source/logconcave.cpp | 124 +++++++++++++++++++-----------------------
src/logconPH.cpp | 118 +++++++++++++++++++++++++--------------
8 files changed, 242 insertions(+), 179 deletions(-)
Title: Instrumental Variable Estimation.
Diff between ivpack versions 1.1 dated 2014-03-21 and 1.2 dated 2014-10-25
Description: This package contains functions for carrying out instrumental variable estimation of causal effects and power analyses for instrumental variable studies.
Author: Yang Jiang and Dylan Small
Maintainer: Dylan Small
DESCRIPTION | 10 +++++-----
MD5 | 8 +++++++-
R/ARsensitivity.ci.R |only
R/ARsensitivity.power.R |only
R/ARsensitivity.size.R |only
man/ARsensitivity.ci.Rd |only
man/ARsensitivity.power.Rd |only
man/ARsensitivity.size.Rd |only
8 files changed, 12 insertions(+), 6 deletions(-)
Title: Discrete Beta Kernel Graduation of Mortality Data
Diff between DBKGrad versions 1.5 dated 2014-04-08 and 1.6 dated 2014-10-25
Description: This package allows for nonparametric graduation of mortality rates using fixed or adaptive discrete beta kernel estimator.
Author: Angelo Mazza [aut, cre],
Antonio Punzo [aut]
Maintainer: Angelo Mazza
DESCRIPTION | 8 ++++----
MD5 | 6 +++---
R/dbkGrad.R | 4 ++--
man/DBKGrad-package.Rd | 4 ++--
4 files changed, 11 insertions(+), 11 deletions(-)
Title: Toolkit To Identify Candidate Synthetic Lethality
Diff between BiSEp versions 1.0 dated 2014-02-25 and 2.0 dated 2014-10-25
Description: Enables the user to infer potential synthetic lethal relationships by analysing relationships between bimodally distributed gene pairs in big gene expression datasets. Enables the user to visualise these candidate synthetic lethal relationships
Author: Mark Wappett
Maintainer: Mark Wappett
BiSEp-1.0/BiSEp/R/BEEP.R |only
BiSEp-1.0/BiSEp/data/BEEM_EXPRS.rda |only
BiSEp-1.0/BiSEp/data/BEEM_MUT.rda |only
BiSEp-1.0/BiSEp/data/BEEP_input_data.rda |only
BiSEp-1.0/BiSEp/data/BEEP_sens_data.rda |only
BiSEp-1.0/BiSEp/data/BIGEE_example_input.rda |only
BiSEp-1.0/BiSEp/data/FURE_example_input.rda |only
BiSEp-1.0/BiSEp/man/BEEM_EXPRS.Rd |only
BiSEp-1.0/BiSEp/man/BEEM_MUT.Rd |only
BiSEp-1.0/BiSEp/man/BEEP.Rd |only
BiSEp-1.0/BiSEp/man/BEEP_input_data.Rd |only
BiSEp-1.0/BiSEp/man/BEEP_sens_data.Rd |only
BiSEp-1.0/BiSEp/man/BIGEE_example_input.Rd |only
BiSEp-1.0/BiSEp/man/FURE_example_input.Rd |only
BiSEp-2.0/BiSEp/DESCRIPTION | 13 -
BiSEp-2.0/BiSEp/MD5 | 55 ++---
BiSEp-2.0/BiSEp/NAMESPACE | 5
BiSEp-2.0/BiSEp/R/BEEM.R | 289 ++++++++-------------------
BiSEp-2.0/BiSEp/R/BIGEE.R | 273 +++++++------------------
BiSEp-2.0/BiSEp/R/BISEP.R | 40 ---
BiSEp-2.0/BiSEp/R/FURE.R | 30 +-
BiSEp-2.0/BiSEp/R/expressionPlot.R |only
BiSEp-2.0/BiSEp/R/waterfallPlot.R |only
BiSEp-2.0/BiSEp/build |only
BiSEp-2.0/BiSEp/data/BISEP_dat.RData |only
BiSEp-2.0/BiSEp/data/BISEP_data.RData |only
BiSEp-2.0/BiSEp/data/FURE_data.RData |only
BiSEp-2.0/BiSEp/data/INPUT_data.RData |only
BiSEp-2.0/BiSEp/data/MUT_data.RData |only
BiSEp-2.0/BiSEp/inst |only
BiSEp-2.0/BiSEp/man/BEEM.Rd | 24 --
BiSEp-2.0/BiSEp/man/BIGEE.Rd | 14 -
BiSEp-2.0/BiSEp/man/BISEP.Rd | 11 -
BiSEp-2.0/BiSEp/man/BISEP_Data.Rd |only
BiSEp-2.0/BiSEp/man/BISEP_dat.Rd |only
BiSEp-2.0/BiSEp/man/BiSEp-package.Rd | 6
BiSEp-2.0/BiSEp/man/FURE.Rd | 12 -
BiSEp-2.0/BiSEp/man/FURE_data.Rd |only
BiSEp-2.0/BiSEp/man/INPUT_data.Rd |only
BiSEp-2.0/BiSEp/man/MUT_data.Rd |only
BiSEp-2.0/BiSEp/man/expressionPlot.Rd |only
BiSEp-2.0/BiSEp/man/waterfallPlot.Rd |only
BiSEp-2.0/BiSEp/vignettes |only
43 files changed, 261 insertions(+), 511 deletions(-)
More information about choroplethrMaps at CRAN
Permanent link