Mon, 27 Oct 2014

Package timeDate updated to version 3011.99 with previous version 3010.98 dated 2013-05-01

Title: Rmetrics - Chronological and Calendar Objects
Description: Environment for teaching "Financial Engineering and Computational Finance".
Author: Rmetrics Core Team, Diethelm Wuertz [aut], Tobias Setz [cre], Yohan Chalabi [ctb], Martin Maechler [ctb], Joe W. Byers [ctb]
Maintainer: Tobias Setz

Diff between timeDate versions 3010.98 dated 2013-05-01 and 3011.99 dated 2014-10-27

 DESCRIPTION                     |   33 
 MD5                             |  129 
 NAMESPACE                       | 1398 -
 R/AllClass.R                    |  181 
 R/AllGeneric.R                  |   85 
 R/base-c.R                      |  120 
 R/base-diff.R                   |  121 
 R/base-difftimeDate.R           |  121 
 R/base-format.R                 |  111 
 R/base-length.R                 |  125 
 R/base-rep.R                    |  135 
 R/base-rev.R                    |   95 
 R/base-round.R                  |  158 
 R/base-sample.R                 |   85 
 R/base-sort.R                   |  107 
 R/base-subset.R                 |  613 
 R/base-summary.R                |  113 
 R/base-unique.R                 |   93 
 R/base-weekdays.R               |  371 
 R/calendar-Easter.R             |  311 
 R/calendar-align.R              |  337 
 R/calendar-atoms.R              |  235 
 R/calendar-dayOfWeek.R          |  178 
 R/calendar-endpoints.R          |  160 
 R/calendar-firstDay.R           |  338 
 R/calendar-isDaily.R            |  333 
 R/calendar-isWeekday.R          |  342 
 R/calendar-julian.R             |  139 
 R/calendar-nDay.R               |  240 
 R/calendar-onOrAfter.R          |  587 
 R/calendar-periods.R            |  457 
 R/holiday-Dates.R               | 1860 -
 R/holiday-LONDON.R              |  290 
 R/holiday-Listing.R             |  347 
 R/holiday-NERC.R                |  285 
 R/holiday-NYSE.R                |  257 
 R/holiday-TSX.R                 |  203 
 R/holiday-ZURICH.R              |  171 
 R/holiday.R                     |  253 
 R/methods-as.R                  |  865 
 R/methods-getDataPart.R         |   50 
 R/methods-mathOps.R             |  281 
 R/methods-names.R               |   60 
 R/methods-plot.R                |  390 
 R/methods-show.R                |  119 
 R/namespace-tags.R              |only
 R/options-RmetricsOptions.R     |  142 
 R/stats-blockStart.R            |  155 
 R/stats-frequency.R             |  107 
 R/stats-kurtosis.R              |  281 
 R/stats-na.fail.R               |   71 
 R/stats-skewness.R              |  283 
 R/stats-start.R                 |  226 
 R/stats-window.R                |  194 
 R/timeDate-Calendar.R           |  269 
 R/timeDate-DaylightSavingTime.R |49034 ++++++++++++++++++++--------------------
 R/timeDate-Sequence.R           |  463 
 R/timeDate-Sys.timeDate.R       |  113 
 R/timeDate-finCenter.R          |   84 
 R/timeDate-generateDST.R        |  360 
 R/timeDate-listFinCenter.R      |  947 
 R/timeDate-midnightStandard.R   |  379 
 R/timeDate-rulesFinCenter.R     |  253 
 R/timeDate-whichFormat.R        |  164 
 R/timeDate.R                    |  829 
 R/tzone.R                       |  206 
 66 files changed, 35157 insertions(+), 32685 deletions(-)

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Package sirt updated to version 1.0-3 with previous version 0.47-36 dated 2014-08-30

Title: Supplementary Item Response Theory Models
Description: Supplementary item response theory models to complement existing functions in R.
Author: Alexander Robitzsch
Maintainer: Alexander Robitzsch

Diff between sirt versions 0.47-36 dated 2014-08-30 and 1.0-3 dated 2014-10-27

 sirt-0.47-36/sirt/R/rm.hrm.R                    |only
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 sirt-1.0-3/sirt/MD5                             |  128 ++++++++-------
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 sirt-1.0-3/sirt/R/data.wide2long.R              |    8 
 sirt-1.0-3/sirt/R/dirichlet.R                   |   30 ++-
 sirt-1.0-3/sirt/R/gom.em.R                      |   74 ++++-----
 sirt-1.0-3/sirt/R/gom.em.alg.R                  |   36 ++--
 sirt-1.0-3/sirt/R/invariance.alignment2.R       |   13 +
 sirt-1.0-3/sirt/R/invariance.alignment2.aux.R   |    5 
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 sirt-1.0-3/sirt/man/fuzdiscr.Rd                 |   52 +++---
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 77 files changed, 1494 insertions(+), 587 deletions(-)

More information about sirt at CRAN
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Package RQDA updated to version 0.2-7 with previous version 0.2-6 dated 2014-05-11

Title: R-based Qualitative Data Analysis
Description: R package for Qualitative Data Analysis. Current version only supports plain text, but it can import PDF highlights if the Enhance package of rjpod, which is available on R-Forge, is installed.
Author: HUANG Ronggui
Maintainer: HUANG Ronggui

Diff between RQDA versions 0.2-6 dated 2014-05-11 and 0.2-7 dated 2014-10-27

 DESCRIPTION           |   10 
 MD5                   |   26 
 R/CaseButton.R        |    8 
 R/CodeCatButton.R     |    2 
 R/Coding_Buttons.R    | 1351 +++++++++++++++++++++++++-------------------------
 R/Profile_Matrix.R    |only
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 R/root_gui.R          |    3 
 inst/NEWS             |    3 
 man/RQDAQuery.rd      |    6 
 man/codingBySearch.Rd |   11 
 15 files changed, 831 insertions(+), 764 deletions(-)

More information about RQDA at CRAN
Permanent link

Package rjags updated to version 3-14 with previous version 3-13 dated 2014-03-06

Title: Bayesian graphical models using MCMC
Description: Interface to the JAGS MCMC library
Author: Martyn Plummer [aut, cre], Alexey Stukalov [ctb]
Maintainer: Martyn Plummer

Diff between rjags versions 3-13 dated 2014-03-06 and 3-14 dated 2014-10-27

 rjags-3-13/rjags/src/jags.cc.orig |only
 rjags-3-14/rjags/DESCRIPTION      |    8 ++++----
 rjags-3-14/rjags/MD5              |    5 ++---
 rjags-3-14/rjags/R/windows/zzz.R  |   30 +++++++++++++++++++++++++++---
 4 files changed, 33 insertions(+), 10 deletions(-)

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Package rangeMapper updated to version 0.2-8 with previous version 0.2-6 dated 2014-02-07

Title: A platform for the study of macroecology of life history traits
Description: Tools for easy generation of (life-history) traits maps based on species range (extent-of-occurrence) maps.
Author: Mihai Valcu , James Dale
Maintainer: Mihai Valcu

Diff between rangeMapper versions 0.2-6 dated 2014-02-07 and 0.2-8 dated 2014-10-27

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 rangeMapper-0.2-8/rangeMapper/NAMESPACE                                               |  211 -
 rangeMapper-0.2-8/rangeMapper/NEWS                                                    |   87 
 rangeMapper-0.2-8/rangeMapper/R/AAA.R                                                 |   30 
 rangeMapper-0.2-8/rangeMapper/R/AllClasses.R                                          |  508 +--
 rangeMapper-0.2-8/rangeMapper/R/GUI.R                                                 |   14 
 rangeMapper-0.2-8/rangeMapper/R/MapCanvas-methods.R                                   |  644 ++--
 rangeMapper-0.2-8/rangeMapper/R/MapExport-methods.R                                   |  118 
 rangeMapper-0.2-8/rangeMapper/R/MapFetch-methods.R                                    |  204 -
 rangeMapper-0.2-8/rangeMapper/R/MapPlot-methods.R                                     |   80 
 rangeMapper-0.2-8/rangeMapper/R/MapProcess-methods.R                                  |  667 ++---
 rangeMapper-0.2-8/rangeMapper/R/MapRemove-methods.R                                   |  138 -
 rangeMapper-0.2-8/rangeMapper/R/MapSave-methods.R                                     |  589 ++--
 rangeMapper-0.2-8/rangeMapper/R/MapSummary-methods.R                                  |  120 
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 rangeMapper-0.2-8/rangeMapper/inst/CITATION                                           |   40 
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 rangeMapper-0.2-8/rangeMapper/inst/GUI/tooltip.js                                     |   28 
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 56 files changed, 5038 insertions(+), 5106 deletions(-)

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Permanent link

New package bio3d with initial version 2.1-3
Package: bio3d
Title: Biological Structure Analysis
Version: 2.1-3
Author: Barry Grant, Xin-Qiu Yao, Lars Skjaerven, Julien Ide
VignetteBuilder: knitr
Imports: parallel, grid
Suggests: XML, RCurl, lattice, ncdf, igraph, bigmemory, knitr, testthat (>= 0.9.1)
Depends: R (>= 3.1.0)
LazyData: yes
Description: Utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform sequence and structure database searches, data summaries, atom selection, alignment, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, normal mode analysis, principal component analysis of heterogeneous structure data, and correlation network analysis from normal mode and molecular dynamics data. In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data. Please refer to the URLs below for more information.
Maintainer: Barry Grant
License: GPL (>= 2)
URL: http://thegrantlab.org/bio3d/, http://bitbucket.org/Grantlab/bio3d
Packaged: 2014-10-24 21:47:52 UTC; xinqyao
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-27 19:03:11

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New package h2o with initial version 2.8.1.1
Package: h2o
Type: Package
Title: H2O R Interface
Version: 2.8.1.1
Date: 2014-05-15
Author: Anqi Fu, Spencer Aiello, Ariel Rao, Tom Kraljevic and Petr Maj, with contributions from the 0xdata team
Maintainer: Tom Kraljevic
Description: Run H2O via its REST API from within R.
License: Apache License (== 2.0)
Depends: R (>= 2.13.0), RCurl, rjson, statmod, survival, stats, tools, utils, methods
Collate: Wrapper.R Internal.R Classes.R ParseImport.R models.R Algorithms.R zzz.R
NeedsCompilation: no
SystemRequirements: Java (>= 1.6)
Suggests: plyr
URL: http://www.0xdata.com
Packaged: 2014-10-23 02:24:40 UTC; jenkins
Repository: CRAN
Date/Publication: 2014-10-27 18:11:24

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Package DALY updated to version 1.4.0 with previous version 1.3.0 dated 2014-05-10

Title: DALY Calculator - A GUI for stochastic DALY calculation in R
Description: The DALY Calculator is a free, open-source Graphical User Interface (GUI) for stochastic disability-adjusted life year (DALY) calculation.
Author: Brecht Devleesschauwer [aut, cre], Scott McDonald [aut], Juanita Haagsma [aut], Nicolas Praet [aut], Arie Havelaar [aut], Niko Speybroeck [aut]
Maintainer: Brecht Devleesschauwer

Diff between DALY versions 1.3.0 dated 2014-05-10 and 1.4.0 dated 2014-10-27

 DESCRIPTION                |   11 ++++++-----
 MD5                        |   17 +++++++++--------
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 R/DALYcalculator.startup.R |    2 +-
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 inst/CITATION              |    4 ++--
 inst/doc/DALYmanual.pdf    |binary
 man/DALY-package.Rd        |    4 ++--
 src/DALY.cpp               |   36 ++++++++++++++++++------------------
 10 files changed, 47 insertions(+), 39 deletions(-)

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Package bdscale updated to version 1.1 with previous version 1.0 dated 2014-10-08

Title: Remove Weekends and Holidays From ggplot2 Axes
Description: Provides a continuous date scale, omitting weekends and holidays.
Author: Dave Mills
Maintainer: Dave Mills

Diff between bdscale versions 1.0 dated 2014-10-08 and 1.1 dated 2014-10-27

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 bdscale-1.1/bdscale/R/scale_bd.R                     |  135 +++++++++++++------
 bdscale-1.1/bdscale/R/yahoo_dates.R                  |   19 +-
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Package RGA updated to version 0.1.3 with previous version 0.1.2 dated 2014-09-01

Title: A Google Analytics API client for R
Description: Provides functions for accessing and retrieving data from the Google Analytics APIs (https://developers.google.com/analytics/). Supports OAuth 2.0 authorization. Package provides access to the Management, Core Reporting, Multi-Channel Funnels Reporting, Real Time Reporting and Metadata APIs. Access to all the Google Analytics accounts which the user has access to. Auto-pagination to return more than 10,000 rows of the results by combining multiple data requests. Also the RGA package provides shiny app to explore the core reporting API dimensions and metrics.
Author: Artem Klevtsov [aut, cre], Philipp Upravitelev [ctb], Olga Shramko [ctb]
Maintainer: Artem Klevtsov

Diff between RGA versions 0.1.2 dated 2014-09-01 and 0.1.3 dated 2014-10-27

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 RGA-0.1.3/RGA/R/convert.R              |   31 ++++++++++-
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 RGA-0.1.3/RGA/R/mgmt.R                 |   43 ++++++++--------
 RGA-0.1.3/RGA/R/query.R                |    2 
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New package qdm with initial version 0.1-0
Package: qdm
Version: 0.1-0
Date: 2014-10-16
Title: Fitting a Quadrilateral Dissimilarity Model to Same-Different Judgments
Authors@R: c(person("Nora", "Umbach", role = c("aut", "cre"), email = "nora.umbach@web.de"), person("Florian", "Wickelmaier", role = "aut"))
Depends: R (>= 3.1.0), stats, graphics
Description: This package provides different specifications of a Quadrilateral Dissimilarity Model which can be used to fit same-different judgments in order to get a predicted matrix that satisfies regular minimality [Colonius & Dzhafarov, 2006, Measurement and representations of sensations, Erlbaum]. From such a matrix, Fechnerian distances can be computed.
License: GPL (>= 2)
Packaged: 2014-10-27 13:33:02 UTC; noraumbach
Author: Nora Umbach [aut, cre], Florian Wickelmaier [aut]
Maintainer: Nora Umbach
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-10-27 15:30:23

More information about qdm at CRAN
Permanent link

Package fICA updated to version 1.0-2 with previous version 1.0-1 dated 2014-09-05

Title: Classical, Reloaded and Adaptive FastICA Algorithms
Description: Algorithms for classical symmetric and deflation-based FastICA, reloaded deflation-based FastICA algorithm and an algorithm for adaptive deflation-based FastICA using multiple nonlinearities.
Author: Jari Miettinen, Klaus Nordhausen, Hannu Oja, Sara Taskinen
Maintainer: Jari Miettinen

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Package choroplethr updated to version 2.0.0 with previous version 1.7.0 dated 2014-06-14

Title: Simplify the creation of choropleth maps in R.
Description: choroplethr simplifies the creation of choropleth maps in R. Choropleths are thematic maps where geographic regions, such as states, are colored according to some metric, such as the number of people who live in that state. choroplethr simplifies this process by 1. Providing ready-made functions for creating choropleths using four different maps. 2. Providing API connections to interesting data sources for making choropleths. 3. Providing a framework for creating choropleths from arbitrary shapefiles. Please see the vignettes for more details.
Author: Ari Lamstein [cre, aut], Brian P Johnson [ctb, frontend animation code]
Maintainer: Ari Lamstein

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Package astsa updated to version 1.3 with previous version 1.2 dated 2014-03-17

Title: Applied Statistical Time Series Analysis
Description: Data sets and scripts for Time Series Analysis and Its Applications: With R Examples by Shumway and Stoffer, 3rd edition
Author: David Stoffer
Maintainer: David Stoffer

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Package sqldf updated to version 0.4-9 with previous version 0.4-7.1 dated 2014-03-15

Title: Perform SQL Selects on R Data Frames
Description: Description: Manipulate R data frames using SQL.
Author: G. Grothendieck
Maintainer: G. Grothendieck

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Package ropensecretsapi updated to version 1.0.1 with previous version 1.0.0 dated 2014-10-05

Title: R Package for the OpenSecrets.org API
Description: An R package for the OpenSecrets.org web services API.
Author: Thomas P. Fuller
Maintainer: Thomas P. Fuller

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Package PopGenReport updated to version 2.1 with previous version 2.0 dated 2014-07-04

Title: PopGenReport: A simple way to analyse and visualize population genetic data
Description: This package provides an easy way to analyse population genetic data
Author: Aaron Adamack & Bernd Gruber
Maintainer: Bernd Gruber

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Package pitchRx updated to version 1.6 with previous version 1.5 dated 2014-07-23

Title: Tools for Harnessing MLBAM Gameday data and Visualizing PITCHf/x
Description: With pitchRx, one can easily obtain Major League Baseball Advanced Media's Gameday data (as well as store it in a remote database). The Gameday website hosts a wealth of data in XML format, but perhaps most interesting is PITCHf/x. Among other things, PITCHf/x data can be used to recreate a baseball's flight path from a pitcher's hand to home plate. With pitchRx, one can easily create animations and interactive 3D scatterplots of the baseball's flight path. PITCHf/x data is also commonly used to generate a static plot of baseball locations at the moment they cross home plate. These plots, sometimes called strike-zone plots, can also refer to a plot of event probabilities over the same region. pitchRx provides an easy and robust way to generate strike-zone plots using the ggplot2 package.
Author: Carson Sievert
Maintainer: Carson Sievert

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