Title: Spatial Modeling on Stream Networks
Diff between SSN versions 1.1.3 dated 2014-05-29 and 1.1.4 dated 2014-11-03
Description: Geostatistical modeling for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including covariates, can be fit with ML or REML. Mapping and other graphical functions are included.
Author: Jay Ver Hoef and Erin Peterson
Maintainer: Jay Ver Hoef
DESCRIPTION | 8 +-
MD5 | 31 +++++-----
R/additive.function.jay.R | 17 +++--
R/createDistMat.R | 8 +-
R/createSSN.R | 18 +++++-
R/createbinaryID.r | 24 +++++---
R/split.predictions.R | 138 +++++++++++++++++++++++++++++++++++++++-------
build/vignette.rds |binary
data/mf04.rda |binary
data/mf04p.rda |binary
data/modelFits.rda |binary
inst/doc/SSN.R |only
inst/doc/SSN.Rnw | 3 -
inst/doc/SSN.pdf |binary
inst/doc/STARS.pdf |binary
inst/vignRnw |only
vignettes/SSN.Rnw | 3 -
17 files changed, 187 insertions(+), 63 deletions(-)
Title: Wrapper functions for FSL (FMRIB Software Library) from
Functional MRI of the Brain (FMRIB)
Diff between fslr versions 1.1 dated 2014-07-31 and 1.3 dated 2014-11-03
Description: Wrapper functions that interface with FSL
(http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/), a powerful and commonly-used
neuroimaging software, using system commands. The goal is to be able to
interface with FSL completely in R, where you pass R nifti objects and the
function executes an FSL command and returns an R nifti object if desired.
Author: John Muschelli
Maintainer: John Muschelli
fslr-1.1/fslr/man/Get-FSLDir.Rd |only
fslr-1.3/fslr/DESCRIPTION | 11
fslr-1.3/fslr/MD5 | 148 ++++--
fslr-1.3/fslr/NAMESPACE | 33 +
fslr-1.3/fslr/R/applywarp.R |only
fslr-1.3/fslr/R/fast.R |only
fslr-1.3/fslr/R/flirt_apply.R |only
fslr-1.3/fslr/R/fnirt.R |only
fslr-1.3/fslr/R/fsl_anat.R |only
fslr-1.3/fslr/R/fslhd.R | 633 ++++++++++++++++++++++-----
fslr-1.3/fslr/R/mask_img.R |only
fslr-1.3/fslr/R/niftiarr.R |only
fslr-1.3/fslr/R/nii.stub.R | 45 +
fslr-1.3/fslr/R/ortho2.R |only
fslr-1.3/fslr/R/rescale_img.R | 32 +
fslr-1.3/fslr/R/robust_window.R |only
fslr-1.3/fslr/R/susan.R |only
fslr-1.3/fslr/R/window_img.R |only
fslr-1.3/fslr/README.md |only
fslr-1.3/fslr/inst/doc/fslr.html | 16
fslr-1.3/fslr/man/cal_img.Rd | 2
fslr-1.3/fslr/man/check_file.Rd | 13
fslr-1.3/fslr/man/check_nifti.Rd | 2
fslr-1.3/fslr/man/checkimg.Rd | 6
fslr-1.3/fslr/man/checkout.Rd | 10
fslr-1.3/fslr/man/cog.Rd |only
fslr-1.3/fslr/man/datatype.Rd | 10
fslr-1.3/fslr/man/drop_img_dim.Rd |only
fslr-1.3/fslr/man/fast.Rd |only
fslr-1.3/fslr/man/fast.help.Rd |only
fslr-1.3/fslr/man/flirt.Rd | 8
fslr-1.3/fslr/man/flirt.help.Rd | 8
fslr-1.3/fslr/man/flirt_apply.Rd |only
fslr-1.3/fslr/man/fnirt.Rd |only
fslr-1.3/fslr/man/fnirt.help.Rd |only
fslr-1.3/fslr/man/fnirt_with_affine.Rd |only
fslr-1.3/fslr/man/fnirt_with_affine_apply.Rd |only
fslr-1.3/fslr/man/fsl_anat.Rd |only
fslr-1.3/fslr/man/fsl_anat.help.Rd |only
fslr-1.3/fslr/man/fsl_applywarp.Rd |only
fslr-1.3/fslr/man/fsl_applywarp.help.Rd |only
fslr-1.3/fslr/man/fsl_biascorrect.Rd |only
fslr-1.3/fslr/man/fslbet.Rd | 7
fslr-1.3/fslr/man/fslbet.help.Rd | 13
fslr-1.3/fslr/man/fslbin.Rd | 2
fslr-1.3/fslr/man/fslcmd.Rd |only
fslr-1.3/fslr/man/fslcog.Rd |only
fslr-1.3/fslr/man/fsldir.Rd |only
fslr-1.3/fslr/man/fslerode.Rd | 6
fslr-1.3/fslr/man/fslfill.Rd | 6
fslr-1.3/fslr/man/fslhd.Rd | 15
fslr-1.3/fslr/man/fslhd.help.Rd | 7
fslr-1.3/fslr/man/fslhd.parse.Rd | 10
fslr-1.3/fslr/man/fslhelp.Rd | 2
fslr-1.3/fslr/man/fslmask.Rd | 6
fslr-1.3/fslr/man/fslmaths.Rd | 6
fslr-1.3/fslr/man/fslmaths.help.Rd | 2
fslr-1.3/fslr/man/fslmerge.Rd | 6
fslr-1.3/fslr/man/fslmerge.help.Rd | 7
fslr-1.3/fslr/man/fslorient.Rd |only
fslr-1.3/fslr/man/fslorient.help.Rd |only
fslr-1.3/fslr/man/fslrange.Rd | 15
fslr-1.3/fslr/man/fslreorient2std.Rd |only
fslr-1.3/fslr/man/fslreorient2std.help.Rd |only
fslr-1.3/fslr/man/fslsmooth.Rd | 6
fslr-1.3/fslr/man/fslstats.Rd | 8
fslr-1.3/fslr/man/fslstats.help.Rd | 2
fslr-1.3/fslr/man/fslsub2.Rd | 6
fslr-1.3/fslr/man/fslswapdim.Rd |only
fslr-1.3/fslr/man/fslswapdim.help.Rd |only
fslr-1.3/fslr/man/fslthresh.Rd | 7
fslr-1.3/fslr/man/fslval.Rd | 15
fslr-1.3/fslr/man/fslval.help.Rd | 7
fslr-1.3/fslr/man/fslview.Rd | 8
fslr-1.3/fslr/man/fslview.help.Rd | 7
fslr-1.3/fslr/man/get.fsl.Rd | 4
fslr-1.3/fslr/man/get.fsloutput.Rd | 2
fslr-1.3/fslr/man/get.imgext.Rd | 2
fslr-1.3/fslr/man/getForms.Rd | 13
fslr-1.3/fslr/man/have.fsl.Rd | 2
fslr-1.3/fslr/man/mask_img.Rd |only
fslr-1.3/fslr/man/melodic.Rd | 9
fslr-1.3/fslr/man/melodic.help.Rd | 7
fslr-1.3/fslr/man/newnii.Rd | 2
fslr-1.3/fslr/man/niftiarr.Rd |only
fslr-1.3/fslr/man/nii.stub.Rd | 6
fslr-1.3/fslr/man/onefile.Rd |only
fslr-1.3/fslr/man/ortho2.Rd |only
fslr-1.3/fslr/man/rescale_img.Rd | 2
fslr-1.3/fslr/man/robust_window.Rd |only
fslr-1.3/fslr/man/susan.Rd |only
fslr-1.3/fslr/man/susan.help.Rd |only
fslr-1.3/fslr/man/tempimg.Rd | 10
fslr-1.3/fslr/man/voxdim.Rd | 2
fslr-1.3/fslr/man/window_img.Rd |only
fslr-1.3/fslr/man/zero_trans.Rd | 2
fslr-1.3/fslr/man/zscore_img.Rd | 10
97 files changed, 983 insertions(+), 243 deletions(-)
Title: High-Dimensional Penalized Regression.
Diff between HDPenReg versions 0.89.9 dated 2014-09-08 and 0.90 dated 2014-11-03
Description: This package contains algorithms for lasso and fused-lasso
problems. It contains an implementation of the lars algorithm [1], for the
lasso and fusion penalization and EM-based algorithms for (logistic) lasso
and fused-lasso.
Author: Quentin Grimonprez [aut, cre],
Serge Iovleff [ctb]
Maintainer: Quentin Grimonprez
HDPenReg-0.89.9/HDPenReg/man/HDpredict.Rd |only
HDPenReg-0.89.9/HDPenReg/man/plotCv.Rd |only
HDPenReg-0.90/HDPenReg/DESCRIPTION | 8 -
HDPenReg-0.90/HDPenReg/MD5 | 74 +++++-----
HDPenReg-0.90/HDPenReg/NAMESPACE | 7
HDPenReg-0.90/HDPenReg/NEWS |only
HDPenReg-0.90/HDPenReg/R/HDPenReg-package.R | 4
HDPenReg-0.90/HDPenReg/R/LarsPath.R | 69 +++++++++
HDPenReg-0.90/HDPenReg/R/cvEM.R | 2
HDPenReg-0.90/HDPenReg/R/cvlars.R | 147 +++++++++++---------
HDPenReg-0.90/HDPenReg/R/predict.R | 40 ++---
HDPenReg-0.90/HDPenReg/build/vignette.rds |binary
HDPenReg-0.90/HDPenReg/inst/doc/vignette.R | 10 -
HDPenReg-0.90/HDPenReg/inst/doc/vignette.Rnw | 21 +-
HDPenReg-0.90/HDPenReg/inst/doc/vignette.pdf |binary
HDPenReg-0.90/HDPenReg/man/EMcvfusedlasso.Rd | 6
HDPenReg-0.90/HDPenReg/man/EMcvlasso.Rd | 2
HDPenReg-0.90/HDPenReg/man/EMfusedlasso.Rd | 6
HDPenReg-0.90/HDPenReg/man/EMlasso.Rd | 2
HDPenReg-0.90/HDPenReg/man/HDPenReg-package.Rd | 6
HDPenReg-0.90/HDPenReg/man/HDcvlars.Rd | 15 +-
HDPenReg-0.90/HDPenReg/man/HDfusion.Rd | 2
HDPenReg-0.90/HDPenReg/man/HDlars.Rd | 2
HDPenReg-0.90/HDPenReg/man/LarsPath-class.Rd | 2
HDPenReg-0.90/HDPenReg/man/coef.LarsPath.Rd |only
HDPenReg-0.90/HDPenReg/man/coeff.Rd | 4
HDPenReg-0.90/HDPenReg/man/computeCoefficients.Rd | 2
HDPenReg-0.90/HDPenReg/man/plot-methods.Rd | 2
HDPenReg-0.90/HDPenReg/man/plot.HDcvlars.Rd |only
HDPenReg-0.90/HDPenReg/man/plotCoefficient.Rd | 4
HDPenReg-0.90/HDPenReg/man/predict.Rd |only
HDPenReg-0.90/HDPenReg/man/simul.Rd | 2
HDPenReg-0.90/HDPenReg/src/HDPenReg/lars/Cvlars.cpp | 24 ---
HDPenReg-0.90/HDPenReg/src/HDPenReg/lars/Cvlars.h | 7
HDPenReg-0.90/HDPenReg/src/HDPenReg/lars/Lars.cpp | 71 +++++++--
HDPenReg-0.90/HDPenReg/src/HDPenReg/lars/Lars.h | 6
HDPenReg-0.90/HDPenReg/src/HDPenReg/lars/Path.h | 2
HDPenReg-0.90/HDPenReg/src/Makevars | 4
HDPenReg-0.90/HDPenReg/src/larsR.cpp | 5
HDPenReg-0.90/HDPenReg/src/larsR.h | 2
HDPenReg-0.90/HDPenReg/vignettes/vignette.Rnw | 21 +-
41 files changed, 354 insertions(+), 227 deletions(-)
Title: A Flexible Modelling Environment for Inverse Modelling,
Sensitivity, Identifiability, Monte Carlo Analysis.
Diff between FME versions 1.3.1 dated 2014-01-13 and 1.3.2 dated 2014-11-03
Description: Provides functions to help in fitting models to data, to
perform Monte Carlo, sensitivity and identifiability analysis. It is
intended to work with models be written as a set of differential
equations that are solved either by an integration routine from
package deSolve, or a steady-state solver from package
rootSolve. However, the methods can also be used with other types of
functions.
Author: Karline Soetaert
Maintainer: Karline Soetaert
.Rinstignore |only
DESCRIPTION | 14 ++++++++------
MD5 | 22 +++++++++++-----------
NAMESPACE | 6 ++++++
R/collin.R | 41 ++++++++++++++++++++++++++++++++++-------
R/modMCMC.R | 1 -
build/vignette.rds |binary
inst/doc/FMEsteady.R | 43 ++++++++++++++++++++++---------------------
inst/doc/FMEsteady.Rnw | 3 ++-
man/FME.Rd | 4 ++--
man/collin.Rd | 6 +++++-
man/modCost.Rd | 2 +-
vignettes/FMEsteady.Rnw | 3 ++-
13 files changed, 93 insertions(+), 52 deletions(-)
Title: Retrieve structured, textual data from various web sources
Diff between tm.plugin.webmining versions 1.2 dated 2014-06-11 and 1.2.2 dated 2014-11-03
More information about tm.plugin.webmining at CRAN
Description: tm.plugin.webmining facilitates text retrieval from feed
formats like XML (RSS, ATOM) and JSON. Also direct retrieval from
HTML is supported. As most (news) feeds only incorporate small
fractions of the original text tm.plugin.webmining even retrieves
and extracts the text of the original text source.
Author: Mario Annau [aut, cre]
Maintainer: Mario Annau
tm.plugin.webmining-1.2.2/tm.plugin.webmining/DESCRIPTION | 8
tm.plugin.webmining-1.2.2/tm.plugin.webmining/MD5 | 96 ++---
tm.plugin.webmining-1.2.2/tm.plugin.webmining/NAMESPACE | 8
tm.plugin.webmining-1.2.2/tm.plugin.webmining/R/corpus.R | 28 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/R/extract.R | 3
tm.plugin.webmining-1.2.2/tm.plugin.webmining/R/getLinkContent.R | 5
tm.plugin.webmining-1.2.2/tm.plugin.webmining/R/reader.R | 71 ----
tm.plugin.webmining-1.2.2/tm.plugin.webmining/R/source.R | 172 ----------
tm.plugin.webmining-1.2.2/tm.plugin.webmining/R/tm.plugin.webmining-package.R | 3
tm.plugin.webmining-1.2.2/tm.plugin.webmining/R/transform.R | 6
tm.plugin.webmining-1.2.2/tm.plugin.webmining/build/vignette.rds |binary
tm.plugin.webmining-1.2.2/tm.plugin.webmining/inst/doc/ShortIntro.R | 5
tm.plugin.webmining-1.2.2/tm.plugin.webmining/inst/doc/ShortIntro.Rnw | 1
tm.plugin.webmining-1.2.2/tm.plugin.webmining/inst/doc/ShortIntro.pdf |binary
tm.plugin.webmining-1.2.2/tm.plugin.webmining/inst/googleSearch.R |only
tm.plugin.webmining-1.2.2/tm.plugin.webmining/inst/test_internal.R | 4
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/GoogleFinanceSource.Rd | 18 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/GoogleNewsSource.Rd | 13
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/NYTimesSource.Rd | 40 --
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/ReutersNewsSource.Rd | 18 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/WebCorpus.Rd | 36 --
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/WebSource.Rd | 37 --
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/YahooFinanceSource.Rd | 18 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/YahooInplaySource.Rd | 14
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/YahooNewsSource.Rd | 15
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/corpus.update.Rd | 28 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/encloseHTML.Rd | 10
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/extract.Rd | 12
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/extractContentDOM.Rd | 30 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/extractHTMLStrip.Rd | 23 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/feedquery.Rd | 17
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/getEmpty.Rd | 10
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/getLinkContent.Rd | 56 +--
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/parse.Rd | 17
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/readWeb.Rd | 24 -
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/removeNonASCII.Rd | 16
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/source.update.Rd | 7
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/tm.plugin.webmining-package.Rd | 39 --
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/trimWhiteSpaces.Rd | 3
tm.plugin.webmining-1.2.2/tm.plugin.webmining/man/yahoonews.Rd | 6
tm.plugin.webmining-1.2.2/tm.plugin.webmining/tests |only
tm.plugin.webmining-1.2.2/tm.plugin.webmining/vignettes/ShortIntro.Rnw | 1
tm.plugin.webmining-1.2/tm.plugin.webmining/inst/tests |only
tm.plugin.webmining-1.2/tm.plugin.webmining/man/GoogleBlogSearchSource.Rd |only
44 files changed, 304 insertions(+), 614 deletions(-)
Permanent link
Title: Tools for reading SDMX data and metadata
Diff between rsdmx versions 0.4-1 dated 2014-09-02 and 0.4-2 dated 2014-11-03
Description: rsdmx provides a set of classes and methods to read data and metadata documents
exchanged through the Statistical Data and Metadata Exchange (SDMX) framework. The
package currently focuses on the SDMX XML standard format (SDMX-ML).
Author: Emmanuel Blondel [aut, cre],
Matthieu Stigler [ctb]
Maintainer: Emmanuel Blondel
DESCRIPTION | 8
MD5 | 72
NAMESPACE | 1
R/Class-SDMX.R | 28
R/Class-SDMXHeader.R | 182
R/SDMXCompactData-methods.R | 9
R/SDMXDataStructures-methods.R | 82
R/SDMXMessageGroup-methods.R | 56
R/readSDMX.R | 85
README.md | 2
inst/extdata/Example_Eurostat_2.0.xml | 100
inst/extdata/Example_Eurostat_2.1.xml | 138
inst/extdata/SDMXDataStructureDefinition_Example_2.0.xml |65226 +++++++--------
inst/extdata/SDMXDataStructures_Example_2.0.xml | 46
inst/extdata/SDMXGenericDataExample_2.1.xml | 138
inst/extdata/SDMXMessageExample_2.0.xml | 56
inst/extdata/SDMXMessageExample_2.1.xml | 48
inst/extdata/SDMXMessageGroupExample_CompactData_2.0.xml |only
man/SDMX-class.Rd | 76
man/SDMX.Rd | 48
man/SDMXCompactData-class.Rd | 44
man/SDMXGenericData-class.Rd | 44
man/SDMXHeader-class.Rd | 96
man/SDMXMessageGroup-class.Rd | 42
man/SDMXSchema-class.Rd | 68
man/SDMXStructureType-class.Rd | 64
man/as.XML-methods.Rd | 54
man/class.SDMXMessageGroup.Rd |only
man/getSDMXHeader-methods.Rd | 52
man/getSDMXSchema-methods.Rd | 54
man/getSDMXType-methods.Rd | 54
man/getStructureType-methods.Rd | 54
man/getType-methods.Rd | 54
man/getVersion-methods.Rd | 54
man/readSDMX.Rd | 6
man/rsdmx-package.Rd | 4
man/version.SDMXSchema.Rd | 40
tests/testthat/test_MessageGroup.R | 12
38 files changed, 33632 insertions(+), 33565 deletions(-)
Title: Practical Numerical Math Functions
Diff between pracma versions 1.7.3 dated 2014-10-12 and 1.7.7 dated 2014-11-03
Description:
Functions from numerical analysis and linear algebra, numerical
optimization, differential equations, plus some special functions.
Uses Matlab function names where appropriate to simplify porting.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers
DESCRIPTION | 12 -
MD5 | 49 +++---
NEWS | 37 +++-
R/brentdekker.R | 11 +
R/euler_heun.R | 2
R/fminbnd.R | 296 +++++++++++++++++++++++-------------
R/fminsearch.R | 2
R/hooke_jeeves.R | 410 ++++++++++++++++++++++++++++++++++++++++++++-------
R/integral.R | 4
R/lambertW.R | 72 +++++---
R/lu.R | 74 +++++++++
R/nelder_mead.R | 282 +++++++++++++++++++----------------
R/newton.R | 4
R/ode23s.R |only
man/brentdekker.Rd | 16 +
man/fminbnd.Rd | 25 +--
man/fzero.Rd | 2
man/hooke_jeeves.Rd | 51 +++---
man/lambertW.Rd | 50 +++---
man/line_integral.Rd | 5
man/lu.Rd | 47 ++++-
man/nelder_mead.Rd | 59 ++-----
man/newtonRaphson.Rd | 5
man/ode.Rd | 30 +++
man/ridders.Rd | 2
man/steep_descent.Rd | 4
26 files changed, 1084 insertions(+), 467 deletions(-)
Title: An Efficient Swiss Army Knife for Population Genomic Analyses
Diff between PopGenome versions 2.0.9 dated 2014-08-30 and 2.1.0 dated 2014-11-03
Description: PopGenome is an R-package for Population Genetic & Genomic Analysis
Author: Bastian Pfeifer, Ulrich Wittelsbuerger
Maintainer: Bastian Pfeifer
DESCRIPTION | 6
MD5 | 71 +++++----
NAMESPACE | 1
NEWS | 24 +++
R/GEN.R | 10 -
R/GENOME.R | 45 ++++--
R/PopGplot.R | 4
R/calc_diversities.R | 1
R/complike.R | 38 +++++
R/concatenate.R | 51 +++++-
R/fstcalc.R | 4
R/get.codons.R | 10 -
R/get_data.R | 6
R/get_segsites.R | 12 +
R/getsyn.R | 2
R/intern.calc.R2.R | 5
R/jack.knife.transform.R |only
R/linkdisequ.R | 3
R/linkdisequ_FAST.R | 11 -
R/parse_gff.R | 2
R/readData.R | 6
R/site_FST.R |only
R/splitting.data.sep.R | 2
R/sweeps.stats.R | 38 +++--
R/wall99bq.R | 5
inst/doc/An_introduction_to_the_PopGenome_package.pdf |binary
inst/doc/Integration_of_new_Methods.pdf |binary
man/F_ST.stats-methods.Rd | 10 -
man/GENOME-class.Rd | 2
man/MKT-methods.Rd | 3
man/PopGplot.Rd | 4
man/detail.stats-methods.Rd | 8 -
man/jack.knife.transform-methods.Rd |only
man/linkage.stats-methods.Rd | 8 -
man/splitting.data-methods.Rd | 3
man/sweeps.stats-methods.Rd | 4
src/R2_C.c | 132 +++++++++++++++---
src/whopgenome/whopgen_codemat.cpp | 26 ++-
38 files changed, 415 insertions(+), 142 deletions(-)
Title: Solving Linear Inverse Models
Diff between limSolve versions 1.5.5 dated 2013-07-02 and 1.5.5.1 dated 2014-11-03
Description: Functions that (1.) Find the minimum/maximum of a linear or quadratic function:
min or max (f(x)), where f(x) = ||Ax-b||^2 or f(x) = sum(ai*xi)
subject to equality constraints Ex=f and/or inequality constraints Gx>=h.
(2.) Sample an underdetermined- or overdetermined system Ex=f subject to Gx>=h, and if applicable Ax~=b.
(3.) Solve a linear system Ax=B for the unknown x. Includes banded and tridiagonal linear systems.
The package calls Fortran functions from LINPACK
Author: Karline Soetaert [aut, cre],
Karel Van den Meersche [aut],
Dick van Oevelen [aut],
LAPACK authors [cph]
Maintainer: Karline Soetaert
limSolve-1.5.5.1/limSolve/DESCRIPTION | 44 +++++++++++++-----------
limSolve-1.5.5.1/limSolve/MD5 | 35 +++++++++++--------
limSolve-1.5.5.1/limSolve/R/lsei.R | 4 +-
limSolve-1.5.5.1/limSolve/build |only
limSolve-1.5.5.1/limSolve/data/Blending.rda |binary
limSolve-1.5.5.1/limSolve/data/Chemtax.rda |binary
limSolve-1.5.5.1/limSolve/data/E_coli.rda |binary
limSolve-1.5.5.1/limSolve/data/Minkdiet.rda |binary
limSolve-1.5.5.1/limSolve/data/RigaWeb.rda |binary
limSolve-1.5.5.1/limSolve/inst/doc/limSolve.R |only
limSolve-1.5.5.1/limSolve/inst/doc/limSolve.Rnw |only
limSolve-1.5.5.1/limSolve/inst/doc/limSolve.pdf |only
limSolve-1.5.5.1/limSolve/inst/doc/xsample.R |only
limSolve-1.5.5.1/limSolve/inst/doc/xsample.Rnw |only
limSolve-1.5.5.1/limSolve/inst/doc/xsample.pdf |only
limSolve-1.5.5.1/limSolve/vignettes |only
limSolve-1.5.5/limSolve/vignetttes |only
17 files changed, 47 insertions(+), 36 deletions(-)
Title: Bayesian Non- and Semi-parametric Model Fitting
Diff between BNSP versions 1.0.0 dated 2014-10-10 and 1.0.1 dated 2014-11-03
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou
ChangeLog |only
DESCRIPTION | 11 ++-
MD5 | 21 ++++---
NAMESPACE | 2
R/bnpglm.R | 65 +++++++++++++---------
R/some.pdfs.R |only
man/BNSP-package.Rd | 7 --
man/bnpglm.Rd | 145 ++++++++++++++++++++++++++++++++------------------
man/some.pdfs.Rd |only
src/OneResLtnt.c | 118 +++++++++++++++++++++++++---------------
src/SpecOneRL.h | 24 ++++----
src/other.functions.h | 121 +++++++++++++++++++++++++++++++++--------
src/pdfs.h | 9 +++
13 files changed, 344 insertions(+), 179 deletions(-)
Title: Analysis of Factorial Experiments
Diff between afex versions 0.11-131 dated 2014-10-11 and 0.12-135 dated 2014-11-03
Description: Provides convenience functions for analyzing factorial experiments
using ANOVA or mixed models. ez.glm(), aov.car(), or aov4() allow
convenient specification of between, within (i.e., repeated-measures), or
mixed between-within (i.e., split-plot) ANOVAs for data in long format
(i.e., one observation per row) aggregating more then one observation per
individual and cell of the design. mixed() fits a mixed model using
lme4::lmer() and computes p-values for all effects in the model using
either Kenward-Roger approximation of degrees of freedom (LMM only),
parametric bootstrap (LMMs and GLMMs) or likelihood ratio tests (LMMs and
GLMMs). afex uses type 3 sums of squares as default (imitating commercial
statistical software). compare.2.vectors() compares two vectors using a
variety of tests (t, wilcoxon, and permutation).
Author: Henrik Singmann [aut, cre],
Ben Bolker [aut],
Søren Højsgaard [ctb],
John Fox [ctb],
Michael A. Lawrence [ctb],
Ulf Mertens [ctb]
Maintainer: Henrik Singmann
DESCRIPTION | 24 ++++++++++++------------
MD5 | 16 ++++++++--------
NEWS | 25 +++++++++++++++++++++++++
R/afex-package.R | 4 ++--
R/aov.car.R | 7 +++++++
R/mixed.R | 4 +++-
man/afex-package.Rd | 4 ++--
tests/testthat/test-aov.car-bugs.R | 15 ++++++++++++---
tests/testthat/test-mixed-structure.R | 16 +++++++++++++---
9 files changed, 84 insertions(+), 31 deletions(-)