Title: Tree-Based Varying Coefficient Regression for Generalized Linear
and Ordinal Mixed Models
Diff between vcrpart versions 0.2-1 dated 2014-09-09 and 0.2-2 dated 2014-11-07
Description: Recursive partitioning for varying coefficient generalized linear models and ordinal linear mixed models. Special features are coefficient-wise partitioning, non-varying coefficients and partitioning of time-varying variables in longitudinal regression.
Author: Reto Buergin [aut, cre, cph],
Gilbert Ritschard [ctb, ths]
Maintainer: Reto Buergin
DESCRIPTION | 11
MD5 | 60 +--
NAMESPACE | 11
NEWS | 41 +-
R/AllGeneric.R | 2
R/fvcm.R | 37 +
R/olmm-methods.R | 88 +++-
R/olmm.R | 66 ++-
R/tvcm-cv.R | 170 +++-----
R/tvcm-methods.R | 551 +++++++++++++---------------
R/tvcm-plot.R | 207 +++++++---
R/tvcm-utils.R | 1008 ++++++++++++++++++++++++++++------------------------
R/tvcm.R | 274 +++++++++-----
R/utils.R | 2
data/PL.RData |only
man/PL.Rd |only
man/fvcm.Rd | 19
man/olmm-gefp.Rd | 32 -
man/olmm-methods.Rd | 33 +
man/olmm.Rd | 2
man/poverty.Rd | 2
man/tvcglm.Rd |only
man/tvcm-control.Rd | 136 ++-----
man/tvcm-cv.Rd | 247 +++++-------
man/tvcm-methods.Rd | 17
man/tvcm-plot.Rd | 7
man/tvcm.Rd | 169 ++------
man/tvcolmm.Rd |only
src/init.c | 3
src/olmm.c | 33 -
src/tvcm.c |only
src/tvcm.h |only
src/utils.c | 44 --
src/utils.h | 2
34 files changed, 1748 insertions(+), 1526 deletions(-)
Title: Estimation of the Structural Topic Model
Diff between stm versions 1.0.1 dated 2014-10-04 and 1.0.8 dated 2014-11-07
Description: The Structural Topic Model (STM) allows researchers
to estimate topic models with document-level covariates.
The package also includes tools for model selection, visualization,
and estimation of topic-covariate regressions.
Author: Margaret E. Roberts, Brandon M. Stewart and Dustin Tingley
Maintainer: Brandon Stewart
stm-1.0.1/stm/vignettes/stmVignette-006.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-008.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-009.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-010.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-011.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-012.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-014.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-017.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-021.pdf |only
stm-1.0.1/stm/vignettes/stmVignette-024.pdf |only
stm-1.0.8/stm/DESCRIPTION | 8
stm-1.0.8/stm/MD5 | 76 +--
stm-1.0.8/stm/NAMESPACE | 2
stm-1.0.8/stm/R/STMfunctions.R | 6
stm-1.0.8/stm/R/STMinit.R | 11
stm-1.0.8/stm/R/multiSTM.R | 33 +
stm-1.0.8/stm/R/parseFormulas.R |only
stm-1.0.8/stm/R/plot.estimateEffect.R | 646 +++-------------------------
stm-1.0.8/stm/R/plot.searchK.R | 9
stm-1.0.8/stm/R/plotRemoved.R | 106 ++--
stm-1.0.8/stm/R/plottingutilfns.R |only
stm-1.0.8/stm/R/prepDocuments.R | 3
stm-1.0.8/stm/R/produce_cmatrix.R |only
stm-1.0.8/stm/R/s.R | 7
stm-1.0.8/stm/R/searchK.R | 66 --
stm-1.0.8/stm/R/selectModel.R | 8
stm-1.0.8/stm/R/simBetas.R |only
stm-1.0.8/stm/build/vignette.rds |binary
stm-1.0.8/stm/data/gadarian.RData |binary
stm-1.0.8/stm/data/gadarianFit.RData |binary
stm-1.0.8/stm/data/poliblog5k.RData |binary
stm-1.0.8/stm/inst/NEWS.Rd | 11
stm-1.0.8/stm/inst/doc/stmVignette.R | 93 ++--
stm-1.0.8/stm/inst/doc/stmVignette.Rnw | 139 ++----
stm-1.0.8/stm/inst/doc/stmVignette.pdf |binary
stm-1.0.8/stm/man/estimateEffect.Rd | 2
stm-1.0.8/stm/man/manyTopics.Rd | 2
stm-1.0.8/stm/man/multiSTM.Rd | 18
stm-1.0.8/stm/man/plot.estimateEffect.Rd | 73 ++-
stm-1.0.8/stm/man/plotRemoved.Rd | 37 -
stm-1.0.8/stm/man/prepDocuments.Rd | 4
stm-1.0.8/stm/man/searchK.Rd | 12
stm-1.0.8/stm/man/selectModel.Rd | 12
stm-1.0.8/stm/man/stm-package.Rd | 4
stm-1.0.8/stm/man/stm.Rd | 2
stm-1.0.8/stm/vignettes/stmVignette.Rnw | 139 ++----
46 files changed, 529 insertions(+), 1000 deletions(-)
Title: Mixed Models, Particularly Spatial GLMMs
Diff between spaMM versions 1.3.0 dated 2014-09-09 and 1.4.0 dated 2014-11-07
Description: Implements a collection of functions for inference in mixed models. It was developed in particular for GLMMs with spatial correlations, but also fits models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroskedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.
Author: François Rousset [aut, cre, cph],
Jean-Baptiste Ferdy [aut, cph]
Maintainer: François Rousset
spaMM-1.3.0/spaMM/R/Bartlett.robust.R |only
spaMM-1.3.0/spaMM/R/CondNormfn.R |only
spaMM-1.3.0/spaMM/R/DEPARSE.R |only
spaMM-1.3.0/spaMM/R/Dim.corMatern.R |only
spaMM-1.3.0/spaMM/R/GammaForDispGammaGLM.R |only
spaMM-1.3.0/spaMM/R/HLCor.obj.R |only
spaMM-1.3.0/spaMM/R/HL_process.args.R |only
spaMM-1.3.0/spaMM/R/HL_strictify.R |only
spaMM-1.3.0/spaMM/R/Initialize.corMatern.R |only
spaMM-1.3.0/spaMM/R/LRT.R |only
spaMM-1.3.0/spaMM/R/LevenbergMstepCallingCpp.R |only
spaMM-1.3.0/spaMM/R/Matern.corr.R |only
spaMM-1.3.0/spaMM/R/Matern.local.R |only
spaMM-1.3.0/spaMM/R/Predictor.R |only
spaMM-1.3.0/spaMM/R/QRwrap.R |only
spaMM-1.3.0/spaMM/R/RcppChol.blockDiag.R |only
spaMM-1.3.0/spaMM/R/ULI.R |only
spaMM-1.3.0/spaMM/R/Variogram.corMatern.R |only
spaMM-1.3.0/spaMM/R/alternating.R |only
spaMM-1.3.0/spaMM/R/anova.HLfit.R |only
spaMM-1.3.0/spaMM/R/as.blockDiag.bar.R |only
spaMM-1.3.0/spaMM/R/as.blockDiag.formula.R |only
spaMM-1.3.0/spaMM/R/as.blockDiag.list.R |only
spaMM-1.3.0/spaMM/R/as.blockDiag.matrix.R |only
spaMM-1.3.0/spaMM/R/as.blockDiag.partition.R |only
spaMM-1.3.0/spaMM/R/as.matrix.blockDiag.R |only
spaMM-1.3.0/spaMM/R/asStandardFormula.R |only
spaMM-1.3.0/spaMM/R/bessel_lnKnu.R |only
spaMM-1.3.0/spaMM/R/binomialize.R |only
spaMM-1.3.0/spaMM/R/calc.tXinvS.R |only
spaMM-1.3.0/spaMM/R/calcDhDv2.R |only
spaMM-1.3.0/spaMM/R/calcPredVar.R |only
spaMM-1.3.0/spaMM/R/checkDistMatrix.R |only
spaMM-1.3.0/spaMM/R/checkRandLink.R |only
spaMM-1.3.0/spaMM/R/checkRandLinkS.R |only
spaMM-1.3.0/spaMM/R/checkRespFam.R |only
spaMM-1.3.0/spaMM/R/chol.blockDiag.R |only
spaMM-1.3.0/spaMM/R/clean_cs.R |only
spaMM-1.3.0/spaMM/R/coef.corMatern.R |only
spaMM-1.3.0/spaMM/R/coef_-.corMatern.R |only
spaMM-1.3.0/spaMM/R/compare.model.structures.R |only
spaMM-1.3.0/spaMM/R/compute.ZALlist.R |only
spaMM-1.3.0/spaMM/R/confint.HLfit.R |only
spaMM-1.3.0/spaMM/R/connectedSets.R |only
spaMM-1.3.0/spaMM/R/corFactor.corMatern.R |only
spaMM-1.3.0/spaMM/R/corMatrix.corMatern.R |only
spaMM-1.3.0/spaMM/R/d2mudeta2fn.R |only
spaMM-1.3.0/spaMM/R/designL.from.Corr.R |only
spaMM-1.3.0/spaMM/R/dispFn.R |only
spaMM-1.3.0/spaMM/R/dispGammaGLM.R |only
spaMM-1.3.0/spaMM/R/dispInv.R |only
spaMM-1.3.0/spaMM/R/elim.redundant.V.R |only
spaMM-1.3.0/spaMM/R/eval.update.call.R |only
spaMM-1.3.0/spaMM/R/extract.check.coords.R |only
spaMM-1.3.0/spaMM/R/extrapolhull.R |only
spaMM-1.3.0/spaMM/R/filled.mapMM.R |only
spaMM-1.3.0/spaMM/R/findOffset.R |only
spaMM-1.3.0/spaMM/R/findSpatial.R |only
spaMM-1.3.0/spaMM/R/findSpatialOrNot.R |only
spaMM-1.3.0/spaMM/R/findbarsMM.R |only
spaMM-1.3.0/spaMM/R/findblocks.R |only
spaMM-1.3.0/spaMM/R/fitted.HLfit.R |only
spaMM-1.3.0/spaMM/R/fitted.HLfitlist.R |only
spaMM-1.3.0/spaMM/R/fixedLRT.R |only
spaMM-1.3.0/spaMM/R/fixef.HLfit.R |only
spaMM-1.3.0/spaMM/R/generateFileName.R |only
spaMM-1.3.0/spaMM/R/getCallHL.R |only
spaMM-1.3.0/spaMM/R/getCovariate.corMatern.R |only
spaMM-1.3.0/spaMM/R/getHLfit.R |only
spaMM-1.3.0/spaMM/R/getProcessed.R |only
spaMM-1.3.0/spaMM/R/getgroups.R |only
spaMM-1.3.0/spaMM/R/is.identity.R |only
spaMM-1.3.0/spaMM/R/is.square.diagonal.R |only
spaMM-1.3.0/spaMM/R/largeLambdaMessages.R |only
spaMM-1.3.0/spaMM/R/legend_lambda.R |only
spaMM-1.3.0/spaMM/R/locoptimthroughSmooth.R |only
spaMM-1.3.0/spaMM/R/logDet.corMatern.R |only
spaMM-1.3.0/spaMM/R/loglfn.ranU.R |only
spaMM-1.3.0/spaMM/R/make.scaled.dist.R |only
spaMM-1.3.0/spaMM/R/makeCheckGeoMatrices.R |only
spaMM-1.3.0/spaMM/R/makeCovEst.R |only
spaMM-1.3.0/spaMM/R/makeLowerUpper.R |only
spaMM-1.3.0/spaMM/R/muetafn.R |only
spaMM-1.3.0/spaMM/R/multi.R |only
spaMM-1.3.0/spaMM/R/newetaFix.R |only
spaMM-1.3.0/spaMM/R/noOffset.R |only
spaMM-1.3.0/spaMM/R/noReForm.R |only
spaMM-1.3.0/spaMM/R/nobarsMM.R |only
spaMM-1.3.0/spaMM/R/nobarsNooffset.R |only
spaMM-1.3.0/spaMM/R/nuFn.R |only
spaMM-1.3.0/spaMM/R/nuInv.R |only
spaMM-1.3.0/spaMM/R/old.nextPoints.R |only
spaMM-1.3.0/spaMM/R/post.process.ZALlist.R |only
spaMM-1.3.0/spaMM/R/predict.HLfit.R |only
spaMM-1.3.0/spaMM/R/predictionCoeffs.R |only
spaMM-1.3.0/spaMM/R/print.HLfit.R |only
spaMM-1.3.0/spaMM/R/print.HLfitlist.R |only
spaMM-1.3.0/spaMM/R/print.arglist.R |only
spaMM-1.3.0/spaMM/R/print.fixedLRT.R |only
spaMM-1.3.0/spaMM/R/print.predictor.R |only
spaMM-1.3.0/spaMM/R/ranef.HLfit.R |only
spaMM-1.3.0/spaMM/R/recalc.corMatern.R |only
spaMM-1.3.0/spaMM/R/rhoFn.R |only
spaMM-1.3.0/spaMM/R/rhoInv.R |only
spaMM-1.3.0/spaMM/R/rntneg.R |only
spaMM-1.3.0/spaMM/R/rntpos.R |only
spaMM-1.3.0/spaMM/R/rsimplex.R |only
spaMM-1.3.0/spaMM/R/rvolTriangulation.R |only
spaMM-1.3.0/spaMM/R/safesolve.qr.matrix.R |only
spaMM-1.3.0/spaMM/R/safesolve.qr.vector.R |only
spaMM-1.3.0/spaMM/R/sampleGridFromLowUp.R |only
spaMM-1.3.0/spaMM/R/sampleNearby.R |only
spaMM-1.3.0/spaMM/R/sampleNextPoints.R |only
spaMM-1.3.0/spaMM/R/selectLoglfn.R |only
spaMM-1.3.0/spaMM/R/setProcessed.R |only
spaMM-1.3.0/spaMM/R/simulate.HLfit.R |only
spaMM-1.3.0/spaMM/R/simulate.HLfitlist.R |only
spaMM-1.3.0/spaMM/R/solveCov.R |only
spaMM-1.3.0/spaMM/R/solveWrap.matrix.R |only
spaMM-1.3.0/spaMM/R/solveWrap.vector.R |only
spaMM-1.3.0/spaMM/R/spMMFactorList.R |only
spaMM-1.3.0/spaMM/R/spMMexpandSlash.R |only
spaMM-1.3.0/spaMM/R/spaMM-internal.R |only
spaMM-1.3.0/spaMM/R/spaMM.colors.R |only
spaMM-1.3.0/spaMM/R/spaMM.filled.contour.R |only
spaMM-1.3.0/spaMM/R/spaMM.getOption.R |only
spaMM-1.3.0/spaMM/R/spaMM.options.R |only
spaMM-1.3.0/spaMM/R/spaMMLRT.R |only
spaMM-1.3.0/spaMM/R/summary.HLfit.R |only
spaMM-1.3.0/spaMM/R/summary.HLfitlist.R |only
spaMM-1.3.0/spaMM/R/summary.fixedLRT.R |only
spaMM-1.3.0/spaMM/R/t.blockDiag.R |only
spaMM-1.3.0/spaMM/R/theta.mu.canonical.R |only
spaMM-1.3.0/spaMM/R/theta.mu.conjugate.R |only
spaMM-1.3.0/spaMM/R/thetaMuDerivs.R |only
spaMM-1.3.0/spaMM/R/toCanonical.R |only
spaMM-1.3.0/spaMM/R/tryCatch.W.E.R |only
spaMM-1.3.0/spaMM/R/update.HLfit.R |only
spaMM-1.3.0/spaMM/R/updateW_ranefS.R |only
spaMM-1.3.0/spaMM/R/updateWranef.R |only
spaMM-1.3.0/spaMM/R/upperPoints.R |only
spaMM-1.3.0/spaMM/R/validData.R |only
spaMM-1.3.0/spaMM/R/volTriangulation.R |only
spaMM-1.3.0/spaMM/R/z%_%.blockDiag.R |only
spaMM-1.3.0/spaMM/R/z%id_id%.R |only
spaMM-1.3.0/spaMM/R/z^.blockDiag.R |only
spaMM-1.4.0/spaMM/DESCRIPTION | 10
spaMM-1.4.0/spaMM/MD5 | 252 ---
spaMM-1.4.0/spaMM/NAMESPACE | 7
spaMM-1.4.0/spaMM/R/Beta.R | 3
spaMM-1.4.0/spaMM/R/HLCor.R | 140 +
spaMM-1.4.0/spaMM/R/HLFactorList.R |only
spaMM-1.4.0/spaMM/R/HLfit.R | 1717 ++++++++++++----------
spaMM-1.4.0/spaMM/R/HLframes.R | 226 ++
spaMM-1.4.0/spaMM/R/LR.R |only
spaMM-1.4.0/spaMM/R/LevenbergMstep.R | 21
spaMM-1.4.0/spaMM/R/auglinmodfit.R |only
spaMM-1.4.0/spaMM/R/blockDiag.R |only
spaMM-1.4.0/spaMM/R/calc.p_v.R |only
spaMM-1.4.0/spaMM/R/confint.R |only
spaMM-1.4.0/spaMM/R/corMatern.R | 343 ++++
spaMM-1.4.0/spaMM/R/corrHLfit.R | 291 +++
spaMM-1.4.0/spaMM/R/corrMM.LRT.R | 402 ++++-
spaMM-1.4.0/spaMM/R/correlationFns.R |only
spaMM-1.4.0/spaMM/R/expandSlash.R |only
spaMM-1.4.0/spaMM/R/extractors.R |only
spaMM-1.4.0/spaMM/R/findplus.R | 1
spaMM-1.4.0/spaMM/R/generateName.R | 15
spaMM-1.4.0/spaMM/R/inverse.Gamma.R | 11
spaMM-1.4.0/spaMM/R/is.diagonal.R |only
spaMM-1.4.0/spaMM/R/locoptim.R | 27
spaMM-1.4.0/spaMM/R/locoptimthroughsmooth.R |only
spaMM-1.4.0/spaMM/R/mapMM.R | 194 ++
spaMM-1.4.0/spaMM/R/migraineLike.R |only
spaMM-1.4.0/spaMM/R/multinomial.R |only
spaMM-1.4.0/spaMM/R/ordinaryKrigingCoefs.R | 10
spaMM-1.4.0/spaMM/R/pastefrom.R | 24
spaMM-1.4.0/spaMM/R/plot.HLfit.R | 5
spaMM-1.4.0/spaMM/R/plotdhglm.R | 1
spaMM-1.4.0/spaMM/R/predict.R |only
spaMM-1.4.0/spaMM/R/predictor.R |only
spaMM-1.4.0/spaMM/R/preprocess.R | 158 +-
spaMM-1.4.0/spaMM/R/profile.R |only
spaMM-1.4.0/spaMM/R/separator.R | 243 +--
spaMM-1.4.0/spaMM/R/simulate.HL.R |only
spaMM-1.4.0/spaMM/R/slashTerms.R | 1
spaMM-1.4.0/spaMM/R/spaMM.data.R |only
spaMM-1.4.0/spaMM/R/subbarsMM.R | 1
spaMM-1.4.0/spaMM/R/summary.HL.R |only
spaMM-1.4.0/spaMM/R/update.HL.R |only
spaMM-1.4.0/spaMM/R/utils.R |only
spaMM-1.4.0/spaMM/data/seeds.RData |only
spaMM-1.4.0/spaMM/data/welding.RData |only
spaMM-1.4.0/spaMM/man/HLCor.Rd | 2
spaMM-1.4.0/spaMM/man/HLfit.Rd | 30
spaMM-1.4.0/spaMM/man/corrHLfit.Rd | 10
spaMM-1.4.0/spaMM/man/extractors.Rd | 20
spaMM-1.4.0/spaMM/man/multinomial.Rd | 6
spaMM-1.4.0/spaMM/man/options.Rd | 9
spaMM-1.4.0/spaMM/man/predict.Rd | 51
spaMM-1.4.0/spaMM/man/seeds.Rd |only
spaMM-1.4.0/spaMM/man/spaMM-internal-blockDiag.Rd | 1
spaMM-1.4.0/spaMM/man/spaMM-internal.Rd | 18
spaMM-1.4.0/spaMM/man/spaMM.Rd | 2
spaMM-1.4.0/spaMM/man/update.Rd | 8
spaMM-1.4.0/spaMM/man/welding.Rd |only
spaMM-1.4.0/spaMM/tests |only
207 files changed, 3045 insertions(+), 1215 deletions(-)
Title: Some additional multiple imputation functions, especially for
mice
Diff between miceadds versions 0.14-9 dated 2014-07-30 and 1.0 dated 2014-11-07
Description: The package miceadds contains some auxiliary functions for
multiple imputation which complements existing functionality in R.
In addition to some utility functions, main features include
plausible value imputation, multilevel imputation functions,
imputation using partial least squares (PLS) for high dimensional
predictors and two-way imputation.
Author: Alexander Robitzsch [aut, cre]
Maintainer: Alexander Robitzsch
DESCRIPTION | 8 +++----
MD5 | 18 ++++++++--------
R/load.data.R | 22 ++++++++++++++++++-
R/write.pspp.R | 4 +--
inst/NEWS | 13 +++++++++++
man/cxxfunction.copy.Rd | 4 +--
man/data.largescale.Rd | 53 +-----------------------------------------------
man/data.smallscale.Rd | 46 ++---------------------------------------
man/load.data.Rd | 14 +++++++++---
man/miceadds-package.Rd | 4 +--
10 files changed, 67 insertions(+), 119 deletions(-)
Title: Bindings to OpenSSL
Diff between openssl versions 0.1 dated 2014-10-21 and 0.2 dated 2014-11-07
Description: Interfaces to the OpenSSL libraries libssl and libcrypto.
Currently only implements bindings to the OpenSSL random number
generator in order to generate crypto secure random bytes in R.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms
openssl-0.1/openssl/man/rand_pseudo_bytes.Rd |only
openssl-0.2/openssl/DESCRIPTION | 15 +++++-------
openssl-0.2/openssl/MD5 | 17 ++++++++------
openssl-0.2/openssl/NAMESPACE | 3 +-
openssl-0.2/openssl/R/openssl.R | 19 +++++++++-------
openssl-0.2/openssl/R/random_num.R |only
openssl-0.2/openssl/configure | 32 ++++++++++-----------------
openssl-0.2/openssl/man/rand_bytes.Rd |only
openssl-0.2/openssl/man/rand_num.Rd |only
openssl-0.2/openssl/src/apple.h |only
openssl-0.2/openssl/src/rand_bytes.c | 5 ++--
openssl-0.2/openssl/tools/winlibs.R | 4 +--
12 files changed, 48 insertions(+), 47 deletions(-)
Title: Plotting multi-dimensional data.
Diff between plot3D versions 1.0-1 dated 2014-01-07 and 1.0-2 dated 2014-11-07
Description: Functions for viewing 2-D and 3-D data, including perspective plots, slice plots, surface plots, scatter plots, ... Includes data sets from oceanography
Author: Karline Soetaert
Maintainer: Karline Soetaert
DESCRIPTION | 10 +++++-----
MD5 | 28 ++++++++++++++--------------
R/ImageOcean.R | 8 ++++----
R/plot.struct.R | 7 +++++--
R/text3D.R | 1 +
build/vignette.rds |binary
data/Hypsometry.rda |binary
data/Oxsat.rda |binary
inst/doc/plot3D.R | 12 ++++++------
inst/doc/plot3D.pdf |binary
inst/doc/plot3D.rnw | 6 +++++-
inst/doc/volcano.rnw | 2 +-
man/plot3D.Rd | 7 ++++++-
vignettes/plot3D.rnw | 6 +++++-
vignettes/volcano.rnw | 2 +-
15 files changed, 53 insertions(+), 36 deletions(-)
Title: MA Birk functions
Diff between birk versions 1.1 dated 2014-08-29 and 1.2 dated 2014-11-07
Description: This is a compilation of functions that I found useful to make. It currently includes a unit of measurement conversion function and a few simple arithmetic functions.
Author: Matthew A Birk
Maintainer: Matthew A Birk
DESCRIPTION | 10 +++++-----
MD5 | 14 ++++++++------
R/conv_unit.R | 30 +++++++++++++++++++++++-------
R/geom_mean.R |only
man/birk-package.Rd | 6 +++---
man/conv_unit.Rd | 25 +++++++++++++++++--------
man/conv_unit_options.Rd | 7 +++++--
man/geom_mean.Rd |only
man/se.Rd | 2 +-
9 files changed, 62 insertions(+), 32 deletions(-)
Title: UK National River Flow Archive data from R
Diff between rnrfa versions 0.1.0 dated 2014-08-15 and 0.1.5 dated 2014-11-07
Description: Utility functions to retrieve data from the UK National River Flow
Archive. The package contains R wrappers to the UK NRFA data temporary-API
(http://www.ceh.ac.uk/data/nrfa/). There are functions to retrieve stations
falling in a bounding box, to generate a map and extracting time series and
general information. It also contain the dataset \code{StationSummary}.
Author: Claudia Vitolo
Maintainer: Claudia Vitolo
DESCRIPTION | 8 ++---
MD5 | 20 ++++++------
R/SearchNRFA.R | 73 +++++++++++++++++++++++++++++------------------
R/zzz.R | 4 +-
man/FindInfo.Rd | 2 -
man/FindTS.Rd | 2 -
man/GetStationSummary.Rd | 2 -
man/OSG2LatLon.Rd | 2 -
man/OSGParse.Rd | 2 -
man/SearchNRFA.Rd | 13 +++++---
man/ToJSONarray.Rd | 2 -
11 files changed, 76 insertions(+), 54 deletions(-)
Title: Rank Estimation for Linear Models
Diff between Rfit versions 0.18 dated 2014-06-26 and 0.21 dated 2014-11-07
Description: R estimation and inference for linear models. Estimation
is for general scores and a library of commonly used score
functions is included.
Author: John Kloke, Joseph McKean
Maintainer: John Kloke
DESCRIPTION | 8 +-
MD5 | 75 ++++++++++++------------
R/Rfit-package.R |only
R/confintadjust.R | 54 +++++++++++++++--
R/disp.R | 44 +++++++++++---
R/drop.test.R | 69 +++++++++++++++++-----
R/gettau.R | 30 +++++++++
R/gettauF0.R | 2
R/grad.R | 45 +++++++++++---
R/jaeckel.R | 100 +++++++++++++++++++++++++++-----
R/kwayr.r | 30 +++++++++
R/looptau.r | 2
R/oneway.rfit.R | 108 +++++++++++++++++++++-------------
R/pasteColsRfit.R | 3
R/print.drop.test.R | 12 +--
R/print.oneway.rfit.R | 16 ++---
R/print.raov.R | 14 +---
R/print.rfit.R | 19 +++++-
R/print.summary.oneway.rfit.R | 11 +--
R/print.summary.rfit.R | 6 -
R/raov.R | 56 +++++++++++++-----
R/redmod.r | 9 +-
R/rfit.R | 59 ++++++++++++++++++-
R/rfit.default.R | 130 ++++++++++++++++++++----------------------
R/rstudent.rfit.R | 62 ++++++++++++--------
R/signedrank.R | 27 +++++++-
R/subsets.r | 12 +--
R/summary.oneway.rfit.R | 38 +++++++++---
R/summary.rfit.R | 62 +++++++++++---------
R/taustar.R | 40 ++++++++++++
R/vcov.rfit.R | 35 +++++++----
R/walsh.R | 42 ++++++++++++-
README.md |only
inst |only
man/Rfit-package.Rd | 4 -
man/drop.test.Rd | 21 ++++++
man/gettau.Rd | 3
man/jaeckel.Rd | 3
man/oneway.rfit.Rd | 2
man/rfit.Rd | 4 -
40 files changed, 897 insertions(+), 360 deletions(-)
Title: Random Uniform Forests for Classification, Regression and
Unsupervised Learning
Diff between randomUniformForest versions 1.0.8 dated 2014-09-19 and 1.0.9 dated 2014-11-07
More information about randomUniformForest at CRAN
Description: Ensemble model, for classification, regression and unsupervised learning, base on a forest of unpruned and randomized binary decision trees.
Author: Saip Ciss
Maintainer: Saip Ciss
DESCRIPTION | 15
MD5 | 41
NAMESPACE | 9
NEWS | 33
R/DecisionTreesCPP.R | 421 +++++----
R/OnliningRandomUniformForests.R | 222 +---
R/RandomUniformForestsCPP.R | 1125 ++++++++++++++++++++++---
R/genericFunctions.R | 592 +++++++++----
build/vignette.rds |binary
inst/CITATION | 2
inst/doc/randomUniformForestsOverview.pdf |binary
inst/doc/randomUniformForestsOverview.pdf.asis | 2
man/as.supervised.Rd |only
man/clusteringObservations.Rd |only
man/generic.cv.Rd |only
man/internalFunctions.Rd | 77 -
man/mergeClusters.Rd |only
man/model.stats.Rd |only
man/modifyClusters.Rd |only
man/predict.randomUniformForest.Rd | 4
man/rUniformForest.big.Rd | 5
man/rUniformForest.combine.Rd | 9
man/randomUniformForest-package.Rd | 34
man/randomUniformForest.Rd | 116 +-
man/unsupervised.randomUniformForest.Rd |only
25 files changed, 1908 insertions(+), 799 deletions(-)
Permanent link
Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Diff between dfcomb versions 1.0 dated 2014-11-06 and 1.0-1 dated 2014-11-07
Description: Phase I/II adaptive dose-finding design for combination
studies. Several methods are proposed depending on the type of
combinations: (1) the combination of two cytotoxic agents, and (2)
combination of a molecularly targeted agent with a cytotoxic agent.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere
DESCRIPTION | 6 +++---
MD5 | 6 +++---
src/Makevars | 1 -
src/Makevars.win | 1 -
4 files changed, 6 insertions(+), 8 deletions(-)
Title: Data Mining Classification and Regression Methods
Diff between rminer versions 1.3.1 dated 2013-08-12 and 1.4 dated 2014-11-07
Description: Facilitates the use of data mining algorithms in classification and regression (including time series forecasting) tasks by presenting a short and coherent set of functions. Versions: 1.4 - new classification and regression models/algorithms, with a total of 14 classification and 15 regression methods, including: Decision Trees, Neural Networks, Support Vector Machines, Random Forests, Bagging and Boosting; 1.3 and 1.3.1 - new classification and regression metrics (improved mmetric function); 1.2 - new input importance methods (improved Importance function); 1.0 - first version.
Author: Paulo Cortez
Maintainer: Paulo Cortez
rminer-1.3.1/rminer/R/naivebayes.R |only
rminer-1.4/rminer/DESCRIPTION | 21
rminer-1.4/rminer/MD5 | 41
rminer-1.4/rminer/NAMESPACE | 49 -
rminer-1.4/rminer/R/estimate.R | 205 ++--
rminer-1.4/rminer/R/metrics.R | 83 +
rminer-1.4/rminer/R/model.R | 1479 ++++++++++++++++---------------
rminer-1.4/rminer/R/plots.R | 164 +--
rminer-1.4/rminer/R/preprocess.R | 9
rminer-1.4/rminer/man/CasesSeries.Rd | 2
rminer-1.4/rminer/man/Importance.Rd | 52 -
rminer-1.4/rminer/man/crossvaldata.Rd | 29
rminer-1.4/rminer/man/fit.Rd | 422 ++++++--
rminer-1.4/rminer/man/holdout.Rd | 71 -
rminer-1.4/rminer/man/imputation.Rd | 15
rminer-1.4/rminer/man/mgraph.Rd | 17
rminer-1.4/rminer/man/mining.Rd | 147 ++-
rminer-1.4/rminer/man/mmetric.Rd | 51 -
rminer-1.4/rminer/man/predict-methods.Rd | 23
rminer-1.4/rminer/man/rminer-internal.Rd | 17
rminer-1.4/rminer/man/sa_fri1.Rd | 5
rminer-1.4/rminer/man/savemining.Rd | 11
22 files changed, 1684 insertions(+), 1229 deletions(-)
Title: R Interface to SDMX Web Services
Diff between RJSDMX versions 1.1 dated 2014-09-23 and 1.2 dated 2014-11-07
Description: Provides functions to retrieve
data and metadata from SDMX compliant data providers.
Author: Attilio Mattiocco, Diana Nicoletti, Gianpaolo Lopez, Banca d'Italia
Maintainer: Attilio Mattiocco
RJSDMX-1.1/RJSDMX/java/it |only
RJSDMX-1.2/RJSDMX/DESCRIPTION | 10 +-
RJSDMX-1.2/RJSDMX/MD5 | 59 ++-------------
RJSDMX-1.2/RJSDMX/NAMESPACE | 2
RJSDMX-1.2/RJSDMX/R/SdmxClient.R | 6 -
RJSDMX-1.2/RJSDMX/R/TSConverter.R | 94 ++++++------------------
RJSDMX-1.2/RJSDMX/R/onLoad.R | 52 +++++++------
RJSDMX-1.2/RJSDMX/demo/RJSDMX.R | 18 ++++
RJSDMX-1.2/RJSDMX/inst/configuration.properties |only
RJSDMX-1.2/RJSDMX/inst/java/SDMX.jar |binary
RJSDMX-1.2/RJSDMX/java/source_code.txt | 3
RJSDMX-1.2/RJSDMX/man/RJSDMX-package.Rd | 24 ++++--
RJSDMX-1.2/RJSDMX/man/addProvider.Rd | 81 ++++++++++----------
13 files changed, 150 insertions(+), 199 deletions(-)
Title: Generalized Diffusion Magnetic Resonance Imaging
Diff between gdimap versions 0.1-6 dated 2014-07-14 and 0.1-8 dated 2014-11-07
Description: Diffusion anisotropy has been used to characterize
white matter neuronal pathways in the human brain, and infer global
connectivity in the central nervous system. The package implements
algorithms to estimate and visualize the orientation of neuronal
pathways in model-free methods (q-space imaging methods).
For estimating fibre orientations two methods have been
implemented. One method implements fibre orientation detection
through local maxima extraction. A second more robust method
is based on directional statistical clustering of ODF voxel data.
Fibre orientations in multiple fibre voxels are estimated using
a mixture of von Mises-Fisher (vMF) distributions. This statistical
estimation procedure is used to resolve crossing fibre
configurations.
Reconstruction of orientation distribution function (ODF)
profiles may be performed using the standard generalized
q-sampling imaging (GQI) approach, Garyfallidis' GQI (GQI2)
approach, or Aganj's variant of the Q-ball imaging (CSA-QBI)
approach. Procedures for the visualization of RGB-maps,
line-maps and glyph-maps of real diffusion magnetic resonance
imaging (dMRI) data-sets are included in the package.
Author: Adelino Ferreira da Silva
Maintainer: Adelino Ferreira da Silva
DESCRIPTION | 13 +-
MD5 | 76 ++++++-------
NAMESPACE | 8 -
NEWS | 3
R/gdiutils.R | 2
R/gqi.odfpeaklines.R | 189 +++++++++++++--------------------
R/gqi.odfpeaks.R | 44 +++----
R/gqi.odfvmf.R | 80 +++++++-------
R/gqi.odfvmflines.R | 257 +++++++++++++++++++++-------------------------
R/gqi.odfvxgrid.R | 42 +++++--
R/niinorm.R | 22 ++-
R/niisetup.R |only
R/plotglyph.R | 2
R/readutils.R | 67 -----------
R/rgbvolmap.R | 12 +-
R/s2tessel.zorder.R | 2
R/simul.fandtasia.R | 35 +++---
R/simul.fandtasiaSignal.R | 11 +
R/simul.simplefield.R | 33 +++--
R/sph.odfpeaklines.R | 173 ++++++++++++++----------------
R/sph.odfpeaks.R | 44 ++++---
R/sph.odfvmf.R | 76 +++++++------
R/sph.odfvmflines.R | 234 +++++++++++++++++++----------------------
R/sph.odfvxgrid.R | 44 +++++--
R/synthfiberss2z.R | 2
man/data.Rd | 2
man/data_gfa.Rd | 2
man/gdimap-package.Rd | 12 +-
man/gqi.odfpeaklines.Rd | 13 +-
man/gqi.odfpeaks.Rd | 2
man/gqi.odfvmf.Rd | 6 -
man/gqi.odfvmflines.Rd | 38 +++---
man/gqi.odfvxgrid.Rd | 2
man/niinorm.Rd | 2
man/niisetup.Rd |only
man/simulglyph.vmf.Rd | 4
man/slfcst.Rd | 2
man/sph.odfpeaklines.Rd | 7 -
man/sph.odfvmf.Rd | 2
man/sph.odfvmflines.Rd | 18 +--
40 files changed, 749 insertions(+), 834 deletions(-)
Title: Double Generalized Linear Models
Diff between dglm versions 1.8 dated 2014-11-06 and 1.8.1 dated 2014-11-07
Description: Fitting double generalized linear models
Author: Peter K Dunn
Maintainer: Peter K Dunn
ChangeLog | 3
DESCRIPTION | 8
MD5 | 6
R/dglmall.R | 1468 ++++++++++++++++++++++++++++++------------------------------
4 files changed, 745 insertions(+), 740 deletions(-)
More information about wikipediatrend at CRAN
Permanent link
Title: Implementing Buy 'Til You Die Models
Diff between BTYD versions 2.3 dated 2014-07-21 and 2.4 dated 2014-11-07
Description: This package contains functions for data preparation, parameter estimation, scoring, and plotting for the BG/BB, BG/NBD and Pareto/NBD models.
Author: Lukasz Dziurzynski [aut],
Edward Wadsworth [aut],
Peter Fader [ctb],
Elea McDonnell Feit [ctb],
Daniel McCarthy [aut, cre, ctb],
Bruce Hardie [ctb],
Arun Gopalakrishnan [ctb],
Eric Schwartz [ctb],
Yao Zhang [ctb]
Maintainer: Daniel McCarthy
ChangeLog |only
DESCRIPTION | 10
MD5 | 228 ++++++++++----------
NAMESPACE | 5
R/bgbb.R | 6
R/bgnbd.R | 3
R/pnbd.R | 89 +++++--
R/spend.R | 2
demo/bgnbd_cdnow.R | 20 -
demo/pnbd_cdnow.R | 16 -
inst/doc/BTYD-walkthrough.Rnw | 2
inst/doc/BTYD-walkthrough.pdf |binary
man/BTYD-package.Rd | 4
man/addLogs.Rd | 2
man/bgbb.ConditionalExpectedTransactions.Rd | 2
man/bgbb.DERT.Rd | 2
man/bgbb.EstimateParameters.Rd | 2
man/bgbb.Expectation.Rd | 2
man/bgbb.HeatmapHoldoutExpectedTrans.Rd | 6
man/bgbb.LL.Rd | 2
man/bgbb.PAlive.Rd | 2
man/bgbb.PlotDropoutRateHeterogeneity.Rd | 2
man/bgbb.PlotFreqVsConditionalExpectedFrequency.Rd | 2
man/bgbb.PlotFrequencyInCalibration.Rd | 2
man/bgbb.PlotFrequencyInHoldout.Rd | 2
man/bgbb.PlotRecVsConditionalExpectedFrequency.Rd | 2
man/bgbb.PlotTrackingCum.Rd | 2
man/bgbb.PlotTrackingInc.Rd | 2
man/bgbb.PlotTransactionRateHeterogeneity.Rd | 2
man/bgbb.PosteriorMeanDropoutRate.Rd | 2
man/bgbb.PosteriorMeanLmProductMoment.Rd | 2
man/bgbb.PosteriorMeanTransactionRate.Rd | 2
man/bgbb.pmf.General.Rd | 2
man/bgbb.pmf.Rd | 6
man/bgnbd.ConditionalExpectedTransactions.Rd | 2
man/bgnbd.EstimateParameters.Rd | 2
man/bgnbd.Expectation.Rd | 2
man/bgnbd.ExpectedCumulativeTransactions.Rd | 2
man/bgnbd.LL.Rd | 2
man/bgnbd.PAlive.Rd | 2
man/bgnbd.PlotDropoutRateHeterogeneity.Rd | 2
man/bgnbd.PlotFreqVsConditionalExpectedFrequency.Rd | 2
man/bgnbd.PlotFrequencyInCalibration.Rd | 2
man/bgnbd.PlotRecVsConditionalExpectedFrequency.Rd | 2
man/bgnbd.PlotTrackingCum.Rd | 2
man/bgnbd.PlotTrackingInc.Rd | 2
man/bgnbd.PlotTransactionRateHeterogeneity.Rd | 2
man/bgnbd.compress.cbs.Rd | 2
man/bgnbd.pmf.General.Rd | 2
man/bgnbd.pmf.Rd | 2
man/dc.BuildCBSFromCBTAndDates.Rd | 2
man/dc.BuildCBTFromElog.Rd | 2
man/dc.CreateFreqCBT.Rd | 2
man/dc.CreateReachCBT.Rd | 2
man/dc.CreateSpendCBT.Rd | 2
man/dc.CumulativeToIncremental.Rd | 2
man/dc.DissipateElog.Rd | 2
man/dc.ElogToCbsCbt.Rd | 2
man/dc.FilterCustByBirth.Rd | 2
man/dc.GetFirstPurchasePeriodsFromCBT.Rd | 2
man/dc.GetLastPurchasePeriodsFromCBT.Rd | 2
man/dc.MakeRFmatrixCal.Rd | 2
man/dc.MakeRFmatrixHoldout.Rd | 2
man/dc.MakeRFmatrixSkeleton.Rd | 2
man/dc.MergeCustomers.Rd | 2
man/dc.MergeTransactionsOnSameDate.Rd | 2
man/dc.PlotLogLikelihoodContour.Rd | 45 +--
man/dc.PlotLogLikelihoodContours.Rd | 29 +-
man/dc.ReadLines.Rd | 2
man/dc.RemoveTimeBetween.Rd | 2
man/dc.SplitUpElogForRepeatTrans.Rd | 2
man/dc.WriteLine.Rd | 2
man/dc.check.model.params.Rd | 2
man/pnbd.ConditionalExpectedTransactions.Rd | 2
man/pnbd.DERT.Rd | 4
man/pnbd.EstimateParameters.Rd | 2
man/pnbd.Expectation.Rd | 2
man/pnbd.ExpectedCumulativeTransactions.Rd | 2
man/pnbd.LL.Rd | 2
man/pnbd.PAlive.Rd | 2
man/pnbd.Plot.DERT.Rd | 2
man/pnbd.PlotDropoutRateHeterogeneity.Rd | 2
man/pnbd.PlotFreqVsConditionalExpectedFrequency.Rd | 2
man/pnbd.PlotFrequencyInCalibration.Rd | 2
man/pnbd.PlotRecVsConditionalExpectedFrequency.Rd | 2
man/pnbd.PlotTrackingCum.Rd | 2
man/pnbd.PlotTrackingInc.Rd | 2
man/pnbd.PlotTransactionRateHeterogeneity.Rd | 2
man/pnbd.compress.cbs.Rd | 2
man/pnbd.pmf.General.Rd | 2
man/pnbd.pmf.Rd | 2
man/spend.EstimateParameters.Rd | 2
man/spend.LL.Rd | 2
man/spend.expected.value.Rd | 2
man/spend.marginal.likelihood.Rd | 2
man/spend.plot.average.transaction.value.Rd | 2
man/subLogs.Rd | 2
vignettes/BTYD-walkthrough.Rnw | 2
vignettes/BTYD-walkthrough.synctex.gz |only
vignettes/figure/bgbbCalibrationFit.pdf |binary
vignettes/figure/bgbbCondExpComp.pdf |binary
vignettes/figure/bgbbCondExpCompRec.pdf |binary
vignettes/figure/bgbbDropoutHeterogeneity.pdf |binary
vignettes/figure/bgbbTrackingCum.pdf |binary
vignettes/figure/bgbbTrackingInc.pdf |binary
vignettes/figure/bgbbTransactionHeterogeneity.pdf |binary
vignettes/figure/bgnbdCalibrationFit.pdf |binary
vignettes/figure/bgnbdCondExpComp.pdf |binary
vignettes/figure/bgnbdDropoutHeterogeneity.pdf |binary
vignettes/figure/bgnbdTransactionHeterogeneity.pdf |binary
vignettes/figure/pnbdCalibrationFit.pdf |binary
vignettes/figure/pnbdCondExpComp.pdf |binary
vignettes/figure/pnbdDropoutHeterogeneity.pdf |binary
vignettes/figure/pnbdTrackingCum.pdf |binary
vignettes/figure/pnbdTrackingInc.pdf |binary
vignettes/figure/pnbdTransactionHeterogeneity.pdf |binary
116 files changed, 322 insertions(+), 313 deletions(-)
Title: Conduct Univariate and Bivariate Wavelet Analyses
Diff between biwavelet versions 0.17.4 dated 2014-11-04 and 0.17.5 dated 2014-11-07
Description: This is a port of the WTC MATLAB package written by Aslak Grinsted
and the wavelet program written by Christopher Torrence and Gibert P.
Compo. This package can be used to perform univariate and bivariate
(cross-wavelet, wavelet coherence, wavelet clustering) analyses.
Author: Tarik C. Gouhier, Aslak Grinsted
Maintainer: Tarik C. Gouhier
DESCRIPTION | 8 ++++----
MD5 | 14 +++++++-------
R/phase.plot.R | 41 ++++++++++++++++++++++++++++++-----------
R/plot.biwavelet.R | 23 ++++++++++-------------
inst/NEWS.Rd | 17 ++++++++++++-----
man/biwavelet-package.Rd | 4 ++--
man/phase.plot.Rd | 18 +++++++++---------
man/plot.biwavelet.Rd | 20 +++++---------------
8 files changed, 79 insertions(+), 66 deletions(-)
Title: Solving and Optimizing Large-Scale Nonlinear Systems
Diff between BB versions 2014.1-1 dated 2014-01-28 and 2014.10-1 dated 2014-11-07
Description: Barzilai-Borwein spectral methods for solving nonlinear
system of equations, and for optimizing nonlinear objective
functions subject to simple constraints. A tutorial style
introduction to this package is available in a vignette on the
CRAN download page or, when the package is loaded in an R
session, with vignette("BB").
Author: Ravi Varadhan [aut, cph, trl],
Paul Gilbert [aut, cre],
Marcos Raydan [ctb] (with co-authors, wrote original algorithms in
fortran. These provided some guidance for implementing R code in
the BB package.),
JM Martinez [ctb] (with co-authors, wrote original algorithms in
fortran. These provided some guidance for implementing R code in
the BB package.),
EG Birgin [ctb] (with co-authors, wrote original algorithms in fortran.
These provided some guidance for implementing R code in the BB
package.),
W LaCruz [ctb] (with co-authors, wrote original algorithms in fortran.
These provided some guidance for implementing R code in the BB
package.)
Maintainer: Paul Gilbert
DESCRIPTION | 12 +---
MD5 | 46 ++++++++++-------
NAMESPACE | 3 +
NEWS | 40 +++++++++++++++
R/BBoptim.R | 9 +--
R/BBsolve.R | 2
R/dfsane.R | 10 ++-
R/multiStart.R | 10 ++-
R/project.R | 114 ++++++++++++++++++++++----------------------
R/sane.R | 8 ++-
R/spg.R | 107 +++++++++++++++++++++++++++--------------
inst/doc/BB.Stex |only
inst/doc/BB.pdf |binary
inst/doc/BB_JSS.bib |only
inst/doc/BBvignetteJSS.Stex |only
inst/doc/BBvignetteJSS.pdf |binary
inst/slowTests |only
man/BBoptim.Rd | 19 ++-----
man/dfsane.Rd | 7 ++
man/multiStart.Rd | 24 ++++++---
man/project.Rd | 12 +++-
man/sane.Rd | 7 ++
man/spg.Rd | 56 ++++++++++-----------
tests/projectLinear.R | 1
vignettes/BB.Stex | 30 ++++++-----
25 files changed, 324 insertions(+), 193 deletions(-)
Title: Bayesian Fertility Projection
Diff between bayesTFR versions 4.0-5 dated 2014-02-10 and 4.0-9 dated 2014-11-07
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu) with code contribution from Bailey Fosdick (bfosdick@uw.edu) and Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova
ChangeLog | 14 ++++++++++++++
DESCRIPTION | 12 ++++++------
MD5 | 22 +++++++++++-----------
R/get_outputs.R | 21 +++++++++++----------
R/mcmc_ini.R | 2 +-
R/plot_functions.R | 25 ++++++++++++-------------
R/run_mcmc.R | 11 +++++------
R/run_mcmc3.R | 3 ++-
R/wpp_data.R | 2 ++
man/bayesTFR-package.Rd | 4 ++--
tests/run_tests.R | 1 +
tests/test_functions.R | 40 ++++++++++++++++++++++++++++++++++++++++
12 files changed, 107 insertions(+), 50 deletions(-)
Title: Interface to the arXiv API
Diff between aRxiv versions 0.5.2 dated 2014-09-17 and 0.5.5 dated 2014-11-07
Description: An interface to the API for arXiv, a repository of
electronic preprints for computer science, mathematics, physics,
quantitative biology, quantitative finance, and statistics.
Author: Karthik Ram [aut],
Karl Broman [aut, cre]
Maintainer: Karl Broman
DESCRIPTION | 8 ++++----
MD5 | 38 +++++++++++++++++++-------------------
R/arxiv_count.R | 7 +++++--
R/arxiv_open.R | 2 ++
R/arxiv_search.R | 23 +++++++++++++++++------
README.md | 18 ++++++++++++------
build/vignette.rds |binary
data/arxiv_cats.RData |binary
data/query_terms.RData |binary
inst/doc/aRxiv.R | 3 +++
inst/doc/aRxiv.Rmd | 15 ++++++++++-----
inst/doc/aRxiv.html | 30 +++++++++++++++++-------------
inst/doc/aRxiv.md | 32 +++++++++++++++++++-------------
man/arxiv_count.Rd | 11 ++++++++---
man/arxiv_open.Rd | 6 +++++-
man/arxiv_search.Rd | 15 ++++++++++-----
tests/testthat/test-batches.R | 6 +++---
tests/testthat/test-date_range.R | 7 +++----
tests/testthat/test-toomany.R | 2 +-
vignettes/aRxiv.Rmd | 15 ++++++++++-----
20 files changed, 148 insertions(+), 90 deletions(-)