Sun, 09 Nov 2014

Package RSiteCatalyst updated to version 1.4.1 with previous version 1.4.0 dated 2014-08-30

Title: R Client for Adobe Analytics API v1.4
Description: Functions for accessing the Adobe Analytics Reporting API
Author: Willem Paling, Randy Zwitch & Jowanza Joseph
Maintainer: Randy Zwitch

Diff between RSiteCatalyst versions 1.4.0 dated 2014-08-30 and 1.4.1 dated 2014-11-09

 DESCRIPTION                            |    8 -
 MD5                                    |  171 +++++++++++++++++++++++----------
 NAMESPACE                              |   40 +++++++
 NEWS                                   |   13 ++
 R/ApiRequest.R                         |    5 
 R/BuildInnerBreakdownsRecursively.R    |    5 
 R/GetActivation.R                      |only
 R/GetAxleStartDate.R                   |only
 R/GetBaseCurrency.R                    |only
 R/GetBaseURL.R                         |only
 R/GetBookmarks.R                       |only
 R/GetCalculatedMetrics.R               |only
 R/GetClassifications.R                 |   16 +--
 R/GetCustomCalendar.R                  |only
 R/GetDashboards.R                      |only
 R/GetDataWarehouseDisplay.R            |only
 R/GetDefaultPage.R                     |only
 R/GetDiscoverEnabled.R                 |only
 R/GetEcommerce.R                       |only
 R/GetGeoSegmentation.R                 |only
 R/GetGroups.R                          |only
 R/GetIPAddressExclusions.R             |only
 R/GetIPObfuscation.R                   |only
 R/GetInternalURLFilters.R              |only
 R/GetKeyVisitors.R                     |only
 R/GetListVariables.R                   |only
 R/GetLocalization.R                    |only
 R/GetLogin.R                           |only
 R/GetLogins.R                          |only
 R/GetMarketingChannelExpiration.R      |only
 R/GetMarketingChannelRules.R           |only
 R/GetMarketingChannels.R               |only
 R/GetMobileAppReporting.R              |only
 R/GetPaidSearchDetection.R             |only
 R/GetPermanentTraffic.R                |only
 R/GetRealTimeReport.R                  |   13 +-
 R/GetReportDescription.R               |only
 R/GetScheduledSpike.R                  |only
 R/GetSegments.R                        |    6 -
 R/GetSiteTitle.R                       |only
 R/GetTimeZone.R                        |only
 R/GetTrackingServer.R                  |only
 R/GetTransactionEnabled.R              |only
 R/GetUniqueVisitorVariable.R           |only
 R/GetVersionAccess.R                   |only
 R/GetVideoSettings.R                   |only
 R/QueueRanked.R                        |    9 +
 R/QueueTrended.R                       |    9 +
 R/RSiteCatalyst.R                      |    4 
 R/SaveRealTimeSettings.R               |   21 ++--
 README.md                              |only
 man/ApiRequest.Rd                      |    6 -
 man/BuildClassificationValueSegment.Rd |    2 
 man/BuildHeader.Rd                     |    2 
 man/BuildInnerBreakdownsRecursively.Rd |    2 
 man/BuildLineItemSegment.Rd            |    6 -
 man/BuildRealTimeReportStructure.Rd    |    2 
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 man/GetCustomCalendar.Rd               |only
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 man/GetDefaultPage.Rd                  |only
 man/GetDiscoverEnabled.Rd              |only
 man/GetEcommerce.Rd                    |only
 man/GetElements.Rd                     |    2 
 man/GetEndpoint.Rd                     |    2 
 man/GetEvars.Rd                        |    2 
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 man/GetGroups.Rd                       |only
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 man/GetMarketingChannelExpiration.Rd   |only
 man/GetMarketingChannelRules.Rd        |only
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 man/GetMetrics.Rd                      |    2 
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 man/GetPaidSearchDetection.Rd          |only
 man/GetPermanentTraffic.Rd             |only
 man/GetProps.Rd                        |    2 
 man/GetQueue.Rd                        |    2 
 man/GetRealTimeReport.Rd               |    6 -
 man/GetRealTimeSettings.Rd             |    2 
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 man/GetReportSuites.Rd                 |    2 
 man/GetScheduledSpike.Rd               |only
 man/GetSegments.Rd                     |    2 
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 man/GetSuccessEvents.Rd                |    2 
 man/GetTimeZone.Rd                     |only
 man/GetTrackingServer.Rd               |only
 man/GetTransactionEnabled.Rd           |only
 man/GetUniqueVisitorVariable.Rd        |only
 man/GetUsageLog.Rd                     |    2 
 man/GetVersionAccess.Rd                |only
 man/GetVideoSettings.Rd                |only
 man/JsonQueueRealTimeReport.Rd         |    2 
 man/JsonQueueReport.Rd                 |    2 
 man/ParseFallout.Rd                    |    2 
 man/ParseOvertime.Rd                   |    2 
 man/ParsePathing.Rd                    |    2 
 man/ParseRanked.Rd                     |    2 
 man/ParseTrended.Rd                    |    2 
 man/QueueFallout.Rd                    |    2 
 man/QueueOvertime.Rd                   |    2 
 man/QueuePathing.Rd                    |    2 
 man/QueueRanked.Rd                     |    9 +
 man/QueueTrended.Rd                    |    9 +
 man/RSiteCatalyst.Rd                   |    6 -
 man/SCAuth.Rd                          |    2 
 man/SaveRealTimeSettings.Rd            |    2 
 man/ValidateReport.Rd                  |    2 
 124 files changed, 298 insertions(+), 128 deletions(-)

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New package PHYLOGR with initial version 1.0.8
Package: PHYLOGR
Version: 1.0.8
Date: 2014/11/09
Title: Functions for Phylogenetically Based Statistical Analyses
Author: Ramon Diaz-Uriarte and Theodore Garland, Jr
Maintainer: Ramon Diaz-Uriarte
Depends: R(>= 1.8.1)
Description: Manipulation and analysis of phylogenetically simulated data sets and phylogenetically based analyses using GLS.
License: GPL (>= 2)
URL: http://ligarto.org/rdiaz
Packaged: 2014-11-09 14:42:16.696 UTC; ramon
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 01:39:39

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Package mpath updated to version 0.1-16 with previous version 0.1-15 dated 2014-09-23

Title: Regularized Linear Models
Description: Algorithms for fitting model-based penalized coefficient paths. Currently the models include penalized Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial regression models. The penalties include least absolute shrinkage and selection operator (LASSO), smoothly clipped absolute deviation (SCAD) and minimax concave penalty (MCP), and each possibly combining with L_2 penalty.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, Trevor Hastie, Rob Tibshirani, Balasubramanian Narasimhan, Gil Chu and Patrick Breheny
Maintainer: Zhu Wang

Diff between mpath versions 0.1-15 dated 2014-09-23 and 0.1-16 dated 2014-11-09

 DESCRIPTION   |    7 ++++---
 MD5           |   18 ++++++++++++------
 NEWS          |    9 ++++++---
 R/glmregNB.R  |    4 +++-
 R/zipath.R    |   33 ++++++++++++++++-----------------
 build         |only
 inst/doc      |only
 man/zipath.Rd |    4 ++++
 src/midloop.f |   10 +++++++---
 vignettes     |only
 10 files changed, 52 insertions(+), 33 deletions(-)

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Package mixlm updated to version 1.0.7 with previous version 1.0.6 dated 2014-09-16

Title: Mixed Model ANOVA and Statistics for Education
Description: The main functions mask call to mixed models by least squares or REML by adding r() function to formulas of lm and glm. It also has a collection of text book statistics for higher education.
Author: Kristian Hovde Liland, Solve Sæbø
Maintainer: Kristian Hovde Liland

Diff between mixlm versions 1.0.6 dated 2014-09-16 and 1.0.7 dated 2014-11-09

 DESCRIPTION |   10 +++++-----
 MD5         |    6 +++---
 R/lm.R      |    6 +++---
 R/mixlm.R   |    2 +-
 4 files changed, 12 insertions(+), 12 deletions(-)

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New package EBglmnet with initial version 3.4
Package: EBglmnet
Type: Package
Title: Empirical Bayesian Lasso (EBlasso) and Elastic Net (EBEN) Methods for Generalized Linear Models
Version: 3.4
Date: 2014-11-08
Author: Anhui Huang
Maintainer: Anhui Huang
Description: Empirical Bayesian Lasso and Elastic Net algorithms are variable selection and estimation methods that outperform other state-of-the-art methods such as Lasso and Elastic Net methods.
License: GPL
Packaged: 2014-11-10 00:32:11 UTC; Anhui
Depends: R (>= 2.10)
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-11-10 01:36:41

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Package VAR.etp updated to version 0.6 with previous version 0.5 dated 2014-10-11

Title: VAR modelling: estimation, testing, and prediction
Description: Estimation, Hypothesis Testing, Prediction for Stationary Vector Autoregressive Models
Author: Jae. H. Kim
Maintainer: Jae H. Kim

Diff between VAR.etp versions 0.5 dated 2014-10-11 and 0.6 dated 2014-11-09

 DESCRIPTION            |    8 ++++----
 MD5                    |   33 +++++++++++++++++----------------
 NAMESPACE              |    2 +-
 R/VAR.irf.R            |   12 ++++++++++--
 man/PR.IARM.Rd         |    5 +++--
 man/VAR.BPR.Rd         |    2 +-
 man/VAR.BaBPR.Rd       |    2 +-
 man/VAR.Boot.Rd        |    2 +-
 man/VAR.FOR.Rd         |    2 +-
 man/VAR.Fore.Rd        |    2 +-
 man/VAR.LR.Rd          |    2 +-
 man/VAR.Pope.Rd        |    2 +-
 man/VAR.Rest.Rd        |    2 +-
 man/VAR.Wald.Rd        |    2 +-
 man/VAR.est.Rd         |    2 +-
 man/VAR.etp-package.Rd |    4 ++--
 man/VAR.irf.Rd         |only
 man/VAR.select.Rd      |    2 +-
 18 files changed, 48 insertions(+), 38 deletions(-)

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New package ips with initial version 0.0-7
Package: ips
Version: 0.0-7
Date: 2014-11-09
Title: Interfaces to Phylogenetic Software in R
Author: Christoph Heibl
Maintainer: Christoph Heibl
Depends: ape, colorspace, XML
Description: This package provides functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.
License: GPL (>= 2)
Packaged: 2014-11-09 21:46:41 UTC; stoffi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-10 00:38:44

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Package sp updated to version 1.0-16 with previous version 1.0-15 dated 2014-04-09

Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial data. The classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb]
Maintainer: Edzer Pebesma

Diff between sp versions 1.0-15 dated 2014-04-09 and 1.0-16 dated 2014-11-09

 sp-1.0-15/sp/ChangeLog                        |only
 sp-1.0-16/sp/DESCRIPTION                      |   20 
 sp-1.0-16/sp/MD5                              |   79 
 sp-1.0-16/sp/NAMESPACE                        |    2 
 sp-1.0-16/sp/R/AAA.R                          |    1 
 sp-1.0-16/sp/R/CRS-methods.R                  |    3 
 sp-1.0-16/sp/R/Spatial-methods.R              |   41 
 sp-1.0-16/sp/R/SpatialGrid-methods.R          |    2 
 sp-1.0-16/sp/R/SpatialGridDataFrame-methods.R |    4 
 sp-1.0-16/sp/R/SpatialLines-methods.R         |   16 
 sp-1.0-16/sp/R/SpatialPoints-methods.R        |    3 
 sp-1.0-16/sp/R/aggregate.R                    |only
 sp-1.0-16/sp/R/bubble.R                       |    9 
 sp-1.0-16/sp/R/disaggregate.R                 |    5 
 sp-1.0-16/sp/R/image.R                        |  134 
 sp-1.0-16/sp/R/over.R                         |   23 
 sp-1.0-16/sp/R/rbind.R                        |    2 
 sp-1.0-16/sp/R/spOptions.R                    |   10 
 sp-1.0-16/sp/R/sp_spat1.R                     |    1 
 sp-1.0-16/sp/R/spplot.R                       |   39 
 sp-1.0-16/sp/R/zerodist.R                     |   23 
 sp-1.0-16/sp/build/vignette.rds               |binary
 sp-1.0-16/sp/inst/ChangeLog                   | 3606 ++++++++++----------------
 sp-1.0-16/sp/inst/doc/csdacm.pdf              |binary
 sp-1.0-16/sp/inst/doc/intro_sp.pdf            |binary
 sp-1.0-16/sp/inst/doc/over.R                  |    2 
 sp-1.0-16/sp/inst/doc/over.Rnw                |    6 
 sp-1.0-16/sp/inst/doc/over.pdf                |binary
 sp-1.0-16/sp/inst/include/sp_xports.c         |   24 
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 sp-1.0-16/sp/man/spplot.Rd                    |   30 
 sp-1.0-16/sp/man/zerodist.Rd                  |   19 
 sp-1.0-16/sp/src/init.c                       |    4 
 sp-1.0-16/sp/src/sp.h                         |    4 
 sp-1.0-16/sp/src/sp_xports.c                  |   24 
 sp-1.0-16/sp/src/zerodist.c                   |   63 
 sp-1.0-16/sp/tests/sel.Rout.save              |   34 
 sp-1.0-16/sp/tests/spplot.Rout.save           |   15 
 sp-1.0-16/sp/vignettes/over.Rnw               |    6 
 42 files changed, 1891 insertions(+), 2393 deletions(-)

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Package plotrix updated to version 3.5-10 with previous version 3.5-7 dated 2014-05-26

Title: Various plotting functions
Description: Lots of plots, various labeling, axis and color scaling functions.
Author: Jim Lemon, Ben Bolker, Sander Oom, Eduardo Klein, Barry Rowlingson, Hadley Wickham, Anupam Tyagi, Olivier Eterradossi, Gabor Grothendieck, Michael Toews, John Kane, Rolf Turner, Carl Witthoft, Julian Stander, Thomas Petzoldt, Remko Duursma, Elisa Biancotto, Ofir Levy, Christophe Dutang, Peter Solymos, Robby Engelmann, Michael Hecker, Felix Steinbeck, Hans Borchers, Henrik Singmann, Ted Toal, Derek Ogle
Maintainer: Jim Lemon

Diff between plotrix versions 3.5-7 dated 2014-05-26 and 3.5-10 dated 2014-11-09

 DESCRIPTION               |    8 ++---
 MD5                       |   66 ++++++++++++++++++++++++----------------------
 NAMESPACE                 |    3 ++
 NEWS                      |   15 ++++++++++
 R/assembly_seats.R        |only
 R/barp.R                  |    7 +++-
 R/bumpchart.R             |   10 ++++--
 R/corner.label.R          |    2 -
 R/draw.circle.R           |    5 ++-
 R/feather.plot.R          |   26 +++++++++++++-----
 R/gap.boxplot.R           |    4 +-
 R/legendg.R               |    9 +++---
 R/maxEmptyRect.R          |    4 ++
 R/pie3D.R                 |   27 +++++++++++-------
 R/radial.grid.R           |   11 +++++--
 R/radial.plot.labels.R    |    2 +
 R/starPie.R               |    2 -
 R/staxlab.R               |    4 +-
 R/taylor.diagram.R        |   20 ++++++++++---
 R/thigmophobe.R           |    1 
 data/soils.rda            |binary
 man/brkdn.plot.Rd         |    8 ++++-
 man/bumpchart.Rd          |    4 +-
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 man/legendg.Rd            |    2 -
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 man/p2p_arrows.Rd         |only
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 man/staxlab.Rd            |    5 ++-
 man/taylor.diagram.Rd     |    5 ++-
 man/thigmophobe.labels.Rd |    7 ++--
 man/twoord.plot.Rd        |    8 +++++
 36 files changed, 218 insertions(+), 105 deletions(-)

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Package ionflows (with last version 1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-11-05 1.0

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New package basicspace with initial version 0.13
Package: basicspace
Version: 0.13
Date: 2014-11-08
Title: Recovering a Basic Space from Issue Scales
Author: Keith Poole , Howard Rosenthal , Jeffrey Lewis , James Lo and Royce Carroll
Maintainer: James Lo
Depends: R (>= 3.0.0), tools (>= 2.0.0)
Description: Conducts Aldrich-McKelvey and Blackbox Scaling to Recover Latent Dimensions of Judgment
License: GPL-2
Repository: CRAN
Date/Publication: 2014-11-09 13:21:07
Packaged: 2014-11-09 01:21:42 UTC; jameslo
NeedsCompilation: yes

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New package riskSimul with initial version 0.1
Package: riskSimul
Type: Package
Title: Risk Quantification for Stock Portfolios under the T-Copula Model
Version: 0.1
Date: 2014-07-11
Author: Wolfgang Hormann, Ismail Basoglu
Maintainer: Wolfgang Hormann
Description: Implements efficient simulation procedures to estimate tail loss probabilities and conditional excess for a stock portfolio. The log-returns are assumed to follow a t-copula model with generalized hyperbolic or t marginals.
Depends: Runuran
License: GPL-2 | GPL-3
Copyright: Wolfgang Hormann
Packaged: 2014-11-09 08:18:36 UTC; Wolfgang
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-09 13:06:05

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New package DOvalidation with initial version 0.1.0
Package: DOvalidation
Type: Package
Title: Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
Version: 0.1.0
Date: 2014-11-09
Author: M.L. Gamiz, E. Mammen, M.D. Martinez-Miranda and J.P. Nielsen
Maintainer: Maria Dolores Martinez-Miranda
Description: Local linear estimator for the univariate hazard (hazard rate) and bandwidth parameter selection using the do-validation method and the standard least squares cross-validation method.
License: GPL-2
Packaged: 2014-11-09 09:21:17 UTC; Usuario
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-11-09 13:07:14

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Package crank updated to version 1.0-6 with previous version 1.0-5 dated 2014-03-30

Title: Completing ranks
Description: Functions for completing and recalculating rankings.
Author: Jim Lemon ,
Maintainer: Jim Lemon

Diff between crank versions 1.0-5 dated 2014-03-30 and 1.0-6 dated 2014-11-09

 DESCRIPTION            |    8 ++++----
 MD5                    |    8 ++++----
 NEWS                   |    4 ++++
 R/page.test.R          |   18 +++++++++++-------
 man/page.trend.test.Rd |    2 +-
 5 files changed, 24 insertions(+), 16 deletions(-)

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New package MetaLandSim with initial version 0.1
Package: MetaLandSim
Type: Package
Title: Metapopulation and Landscape Simulation
Version: 0.1
Date: 2014-10-08
Depends: R (>= 2.10), tcltk, spatstat, stats, sp
Imports: Biobase, e1071, fgui, grDevices, graphics, googleVis, maptools, rgeos, spgrass6, raster
Suggests: rasterVis
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre
Description: Tools to generate random landscape graphs, evaluate species occurrence in dynamic landscapes, simulate future landscape occupation and evaluate range expansion when new empty patches are available (e.g. as a result of climate change).
License: GPL (>= 2)
Repository: CRAN
Packaged: 2014-11-09 00:19:18 UTC; Frederico
NeedsCompilation: no
Date/Publication: 2014-11-09 09:35:48

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