Title: Amelia II: A Program for Missing Data
Diff between Amelia versions 1.7.2 dated 2013-06-08 and 1.7.3 dated 2014-11-15
Description: Amelia II "multiply imputes" missing data in a single cross-section
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data
set (such as collected by years for each of several countries).
Amelia II implements our bootstrapping-based algorithm that gives
essentially the same answers as the standard IP or EMis approaches,
is usually considerably faster than existing approaches and can
handle many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but please
let us know if you find to the contrary!). The program also
generalizes existing approaches by allowing for trends in time series
across observations within a cross-sectional unit, as well as priors
that allow experts to incorporate beliefs they have about the values
of missing cells in their data. Amelia II also includes useful
diagnostics of the fit of multiple imputation models. The program
works from the R command line or via a graphical user interface that
does not require users to know R.
Author: James Honaker
Maintainer: Matthew Blackwell
Amelia-1.7.2/Amelia/vignettes/Rplots.pdf |only
Amelia-1.7.3/Amelia/DESCRIPTION | 58
Amelia-1.7.3/Amelia/MD5 | 41
Amelia-1.7.3/Amelia/NAMESPACE | 3
Amelia-1.7.3/Amelia/NEWS | 7
Amelia-1.7.3/Amelia/R/amcheck.r | 27
Amelia-1.7.3/Amelia/R/ameliagui.r | 1917 +++++++++++++++----------------
Amelia-1.7.3/Amelia/R/diag.r | 2
Amelia-1.7.3/Amelia/R/emb.r | 36
Amelia-1.7.3/Amelia/R/mo.R | 39
Amelia-1.7.3/Amelia/R/plot.amelia.R | 16
Amelia-1.7.3/Amelia/R/prep.r | 8
Amelia-1.7.3/Amelia/build |only
Amelia-1.7.3/Amelia/inst/doc/amelia.R |only
Amelia-1.7.3/Amelia/inst/doc/amelia.Rnw | 32
Amelia-1.7.3/Amelia/inst/doc/amelia.pdf |binary
Amelia-1.7.3/Amelia/man/amelia.Rd | 6
Amelia-1.7.3/Amelia/man/moPrep.Rd | 11
Amelia-1.7.3/Amelia/src/em.cpp | 11
Amelia-1.7.3/Amelia/tests |only
Amelia-1.7.3/Amelia/vignettes/Makefile | 2
Amelia-1.7.3/Amelia/vignettes/amelia.Rnw | 32
22 files changed, 1199 insertions(+), 1049 deletions(-)
Title: Vowel Manipulation, Normalization, and Plotting
Diff between vowels versions 1.2 dated 2012-11-06 and 1.2-1 dated 2014-11-15
Description: Procedures for the manipulation, normalization, and plotting of phonetic and sociophonetic vowel formant data. vowels is the backend for the NORM website.
Author: Tyler Kendall and Erik R. Thomas
Maintainer: Tyler Kendall
DESCRIPTION | 16 +++++++---------
MD5 | 32 +++++++++++++++++---------------
NAMESPACE | 3 +--
R/vowels.R | 9 +++++----
data |only
man/compute.means.Rd | 10 +++++-----
man/convert.bark.Rd | 2 +-
man/label.columns.Rd | 2 +-
man/load.vowels.Rd | 5 +----
man/norm.bark.Rd | 2 +-
man/norm.labov.Rd | 2 +-
man/norm.lobanov.Rd | 2 +-
man/norm.nearey.Rd | 2 +-
man/norm.wattfabricius.Rd | 2 +-
man/ohiovowels.Rd |only
man/scalevowels.Rd | 2 +-
man/vowelplot.Rd | 31 +++++++++++++++++++------------
man/vowels-package.Rd | 30 ++++++++++++++++++++----------
18 files changed, 83 insertions(+), 69 deletions(-)
Title: Diverse basic statistical and graphical functions
Diff between RVAideMemoire versions 0.9-40 dated 2014-09-27 and 0.9-41 dated 2014-11-15
Description: This package contains diverse more or less complicated functions, written to simplify user's life: simplifications of existing functions, basic but not implemented tests, easy-to-use tools, bridges between functions of different packages... All functions are presented in the French book 'Aide-memoire de statistique appliquee a la biologie', written by the same author and available on CRAN.
Author: Maxime Hervé
Maintainer: Maxime Hervé
RVAideMemoire-0.9-40/RVAideMemoire/R/lsm.basis.clm.R |only
RVAideMemoire-0.9-40/RVAideMemoire/R/lsm.basis.clmm.R |only
RVAideMemoire-0.9-40/RVAideMemoire/man/DA.var.Rd |only
RVAideMemoire-0.9-40/RVAideMemoire/man/byf.normhist.Rd |only
RVAideMemoire-0.9-40/RVAideMemoire/man/fc.multcomp.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/DESCRIPTION | 14 -
RVAideMemoire-0.9-41/RVAideMemoire/MD5 | 36 +--
RVAideMemoire-0.9-41/RVAideMemoire/NAMESPACE | 7
RVAideMemoire-0.9-41/RVAideMemoire/NEWS |only
RVAideMemoire-0.9-41/RVAideMemoire/R/DA.var.R | 53 -----
RVAideMemoire-0.9-41/RVAideMemoire/R/MVA.synt.R | 6
RVAideMemoire-0.9-41/RVAideMemoire/R/byf.hist.R | 55 +++++
RVAideMemoire-0.9-41/RVAideMemoire/R/byf.normhist.R | 33 ---
RVAideMemoire-0.9-41/RVAideMemoire/R/dhist.R |only
RVAideMemoire-0.9-41/RVAideMemoire/R/fc.multcomp.R | 93 ----------
RVAideMemoire-0.9-41/RVAideMemoire/R/plot1comp.ind.R | 27 --
RVAideMemoire-0.9-41/RVAideMemoire/R/zzz.R | 2
RVAideMemoire-0.9-41/RVAideMemoire/man/MVA.synt.Rd | 6
RVAideMemoire-0.9-41/RVAideMemoire/man/RVAideMemoire-package.Rd | 4
RVAideMemoire-0.9-41/RVAideMemoire/man/byf.hist.Rd | 9
RVAideMemoire-0.9-41/RVAideMemoire/man/deprecated.Rd |only
RVAideMemoire-0.9-41/RVAideMemoire/man/plot1comp.ind.Rd | 18 +
RVAideMemoire-0.9-41/RVAideMemoire/man/rating.lsmeans.Rd | 2
23 files changed, 111 insertions(+), 254 deletions(-)
Title: Practical Numerical Math Functions
Diff between pracma versions 1.7.7 dated 2014-11-03 and 1.7.9 dated 2014-11-15
Description:
Functions from numerical analysis and linear algebra, numerical
optimization, differential equations, plus some special functions.
Uses Matlab function names where appropriate to simplify porting.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers
DESCRIPTION | 12 ++++++------
MD5 | 20 ++++++++++++--------
NEWS | 12 ++++++++++++
R/fminbnd.R | 4 ++--
R/midpoint.R |only
R/qpspecial.R |only
data/brown72.rda |binary
data/nile.rda |binary
data/titanium.rda |binary
man/fminbnd.Rd | 3 ++-
man/midpoint.Rd |only
man/pracma-package.Rd | 13 +++++++++----
man/qpspecial.Rd |only
13 files changed, 43 insertions(+), 21 deletions(-)
Title: Regularization paths for regression models with grouped
covariates
Diff between grpreg versions 2.7-1 dated 2014-08-13 and 2.8-0 dated 2014-11-15
Description: Efficient algorithms for fitting the regularization path of
linear or logistic regression models with grouped penalties. This
includes group selection methods such as group lasso, group MCP, and
group SCAD as well as bi-level selection methods such as the group
exponential lasso, the composite MCP, and the group bridge.
Author: Patrick Breheny
Maintainer: Patrick Breheny
DESCRIPTION | 8
MD5 | 50 +-
NEWS | 17
R/cv.grpreg.R | 25 -
R/gBridge.R | 49 +-
R/grpreg.R | 74 ++-
R/loss.R | 8
R/multi.R | 8
R/plot.R | 14
R/plot.cv.R | 3
R/predict.R | 8
R/select.R | 15
R/setupLambda.R | 14
R/summary.cv.grpreg.R | 14
inst/tests/agreement.R | 138 +++---
inst/tests/basic-functionality.R | 301 +++++++-------
inst/tests/extra-features.R | 526 +++++++++++++------------
inst/tests/multitask.R | 12
inst/tests/standardization-orthogonalization.R | 134 +++---
man/cv.grpreg.Rd | 13
man/gBridge.Rd | 2
man/grpreg.Rd | 32 +
man/predict.Rd | 6
man/select.grpreg.Rd | 22 -
src/grpreg.c | 2
tests/test-all.R | 14
26 files changed, 847 insertions(+), 662 deletions(-)
Title: Cross-Entropy Clustering
Diff between CEC versions 0.9.1 dated 2014-10-09 and 0.9.2 dated 2014-11-15
Description: Cross-Entropy Clustering (CEC) divides the data into Gaussian type clusters. It performs the automatic reduction of unnecessary clusters, while at the same time allows the simultaneous use of various type Gaussian mixture models.
Author: Konrad Kamieniecki [aut, cre], Przemyslaw Spurek [ctb]
Maintainer: Konrad Kamieniecki
CEC-0.9.1/CEC/src/energy_function.c |only
CEC-0.9.1/CEC/src/energy_function.h |only
CEC-0.9.1/CEC/src/energy_function_context.c |only
CEC-0.9.1/CEC/src/energy_function_context.h |only
CEC-0.9.2/CEC/DESCRIPTION | 11
CEC-0.9.2/CEC/MD5 | 60 ++--
CEC-0.9.2/CEC/R/cec.R | 378 +++++++++++++---------------
CEC-0.9.2/CEC/R/cec.params.R | 20 -
CEC-0.9.2/CEC/R/ellipse.R | 1
CEC-0.9.2/CEC/R/tests.R | 20 +
CEC-0.9.2/CEC/man/cec.Rd | 2
CEC-0.9.2/CEC/src/alloc.c | 3
CEC-0.9.2/CEC/src/alloc.h | 4
CEC-0.9.2/CEC/src/array.c | 14 -
CEC-0.9.2/CEC/src/array.h | 10
CEC-0.9.2/CEC/src/cec.c | 169 ++----------
CEC-0.9.2/CEC/src/cec.h | 10
CEC-0.9.2/CEC/src/cec_context.c | 8
CEC-0.9.2/CEC/src/cec_context.h | 13
CEC-0.9.2/CEC/src/cec_r.c | 88 +++---
CEC-0.9.2/CEC/src/cec_r.h | 9
CEC-0.9.2/CEC/src/cec_r_utils.h | 9
CEC-0.9.2/CEC/src/centers_init_r.h | 9
CEC-0.9.2/CEC/src/cov_utils.c | 10
CEC-0.9.2/CEC/src/cov_utils.h | 10
CEC-0.9.2/CEC/src/cross_entropy_context.c |only
CEC-0.9.2/CEC/src/cross_entropy_context.h |only
CEC-0.9.2/CEC/src/energy.c |only
CEC-0.9.2/CEC/src/energy.h |only
CEC-0.9.2/CEC/src/errors.c | 4
CEC-0.9.2/CEC/src/errors.h | 4
CEC-0.9.2/CEC/src/kmeanspp.c | 3
CEC-0.9.2/CEC/src/kmeanspp.h | 5
CEC-0.9.2/CEC/src/matrix.h | 10
CEC-0.9.2/CEC/src/rand.h | 10
35 files changed, 412 insertions(+), 482 deletions(-)